Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0480019164.01.T01 | XP_003605125.2 | 97.17 | 106 | 3 | 0 | 1 | 106 | 1 | 106 | 9.53E-69 | 216 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0480019164.01.T01 | G7JEM0 | 97.170 | 106 | 3 | 0 | 1 | 106 | 1 | 106 | 4.55e-69 | 216 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MsG0080048059.01 | MsG0480019164.01 | -0.805231 | 1.474746e-49 | 7.760856e-47 |
| MsG0180000193.01 | MsG0480019164.01 | -0.807397 | 5.156662e-50 | 2.869217e-47 |
| MsG0180000194.01 | MsG0480019164.01 | -0.800462 | 1.425307e-48 | 6.640364e-46 |
| MsG0180000325.01 | MsG0480019164.01 | -0.800771 | 1.232401e-48 | 5.786879e-46 |
| MsG0180000502.01 | MsG0480019164.01 | -0.810531 | 1.100423e-50 | 6.649419e-48 |
| MsG0180001796.01 | MsG0480019164.01 | 0.810770 | 9.771927e-51 | 5.942907e-48 |
| MsG0180001797.01 | MsG0480019164.01 | 0.832977 | 6.946405e-56 | 7.890374e-53 |
| MsG0180001800.01 | MsG0480019164.01 | 0.810596 | 1.065621e-50 | 6.450543e-48 |
| MsG0180002809.01 | MsG0480019164.01 | -0.804234 | 2.382043e-49 | 1.221707e-46 |
| MsG0180002935.01 | MsG0480019164.01 | 0.823769 | 1.158906e-53 | 1.007366e-50 |
| MsG0180003296.01 | MsG0480019164.01 | -0.819443 | 1.158355e-52 | 8.915212e-50 |
| MsG0180003904.01 | MsG0480019164.01 | -0.807488 | 4.931582e-50 | 2.750488e-47 |
| MsG0180003980.01 | MsG0480019164.01 | -0.814575 | 1.436563e-51 | 9.675167e-49 |
| MsG0180003985.01 | MsG0480019164.01 | -0.812326 | 4.484870e-51 | 2.843098e-48 |
| MsG0180004292.01 | MsG0480019164.01 | -0.800626 | 1.319529e-48 | 6.173458e-46 |
| MsG0180004302.01 | MsG0480019164.01 | -0.802206 | 6.263363e-49 | 3.049872e-46 |
| MsG0180004424.01 | MsG0480019164.01 | 0.800429 | 1.447128e-48 | 6.736965e-46 |
| MsG0180004553.01 | MsG0480019164.01 | -0.822676 | 2.084997e-53 | 1.757091e-50 |
| MsG0180004852.01 | MsG0480019164.01 | -0.807611 | 4.644533e-50 | 2.598502e-47 |
| MsG0180004962.01 | MsG0480019164.01 | 0.828680 | 7.857032e-55 | 7.864673e-52 |
| MsG0180005516.01 | MsG0480019164.01 | -0.802301 | 5.986957e-49 | 2.922640e-46 |
| MsG0180006212.01 | MsG0480019164.01 | -0.811301 | 7.495606e-51 | 4.622936e-48 |
| MsG0280006336.01 | MsG0480019164.01 | -0.815288 | 9.982530e-52 | 6.854332e-49 |
| MsG0280006452.01 | MsG0480019164.01 | -0.803044 | 4.206821e-49 | 2.092667e-46 |
| MsG0280011252.01 | MsG0480019164.01 | -0.806450 | 8.177402e-50 | 4.439891e-47 |
| MsG0280011449.01 | MsG0480019164.01 | -0.826148 | 3.180845e-54 | 2.958499e-51 |
| MsG0380011635.01 | MsG0480019164.01 | 0.816184 | 6.303889e-52 | 4.435958e-49 |
| MsG0380012444.01 | MsG0480019164.01 | -0.803464 | 3.443004e-49 | 1.731351e-46 |
| MsG0380013506.01 | MsG0480019164.01 | -0.811518 | 6.725922e-51 | 4.172324e-48 |
| MsG0380014709.01 | MsG0480019164.01 | -0.800729 | 1.257031e-48 | 5.896426e-46 |
| MsG0380014711.01 | MsG0480019164.01 | -0.800772 | 1.231842e-48 | 5.784446e-46 |
| MsG0480019164.01 | MsG0480019346.01 | 0.803534 | 3.330305e-49 | 1.677771e-46 |
| MsG0480019164.01 | MsG0480019348.01 | 0.805551 | 1.264198e-49 | 6.707435e-47 |
| MsG0480019164.01 | MsG0480019861.01 | -0.817126 | 3.876178e-52 | 2.798759e-49 |
| MsG0480019164.01 | MsG0480019923.01 | 0.809024 | 2.321595e-50 | 1.348030e-47 |
| MsG0480019164.01 | MsG0480020122.01 | -0.810957 | 8.900533e-51 | 5.440535e-48 |
| MsG0480019164.01 | MsG0480021307.01 | -0.812077 | 5.082878e-51 | 3.200396e-48 |
| MsG0480019164.01 | MsG0480022286.01 | -0.801805 | 7.572738e-49 | 3.650165e-46 |
| MsG0480019164.01 | MsG0480022295.01 | -0.823957 | 1.047028e-53 | 9.148893e-51 |
| MsG0480019164.01 | MsG0480022366.01 | -0.808779 | 2.618337e-50 | 1.510449e-47 |
| MsG0480019164.01 | MsG0480022417.01 | -0.805140 | 1.541155e-49 | 8.091528e-47 |
| MsG0480019164.01 | MsG0480022665.01 | -0.804396 | 2.204115e-49 | 1.135185e-46 |
| MsG0480019164.01 | MsG0480023217.01 | -0.813844 | 2.083369e-51 | 1.375557e-48 |
| MsG0480019164.01 | MsG0480023505.01 | -0.800105 | 1.684526e-48 | 7.777584e-46 |
| MsG0480019164.01 | MsG0480023850.01 | -0.809755 | 1.617910e-50 | 9.579890e-48 |
| MsG0480019164.01 | MsG0580024086.01 | 0.807401 | 5.147746e-50 | 2.864504e-47 |
| MsG0480019164.01 | MsG0580024128.01 | -0.822243 | 2.629062e-53 | 2.188299e-50 |
| MsG0480019164.01 | MsG0580024309.01 | -0.802886 | 4.535221e-49 | 2.247079e-46 |
| MsG0480019164.01 | MsG0580024464.01 | 0.804291 | 2.318239e-49 | 1.190786e-46 |
| MsG0480019164.01 | MsG0580024571.01 | -0.801190 | 1.012039e-48 | 4.803045e-46 |
| MsG0480019164.01 | MsG0580024875.01 | -0.802673 | 5.018450e-49 | 2.472977e-46 |
| MsG0480019164.01 | MsG0580025965.01 | 0.814714 | 1.338665e-51 | 9.049409e-49 |
| MsG0480019164.01 | MsG0580025983.01 | -0.805311 | 1.419013e-49 | 7.482967e-47 |
| MsG0480019164.01 | MsG0580026492.01 | 0.800335 | 1.512253e-48 | 7.023255e-46 |
| MsG0480019164.01 | MsG0580027751.01 | 0.816648 | 4.963154e-52 | 3.537077e-49 |
| MsG0480019164.01 | MsG0580027752.01 | 0.827362 | 1.631687e-54 | 1.571979e-51 |
| MsG0480019164.01 | MsG0580027753.01 | 0.818932 | 1.514468e-52 | 1.149354e-49 |
| MsG0480019164.01 | MsG0580027983.01 | -0.825946 | 3.552897e-54 | 3.285736e-51 |
| MsG0480019164.01 | MsG0580028982.01 | -0.823817 | 1.129028e-53 | 9.826907e-51 |
| MsG0480019164.01 | MsG0580030203.01 | -0.813700 | 2.241510e-51 | 1.474262e-48 |
| MsG0480019164.01 | MsG0680030382.01 | 0.817718 | 2.850833e-52 | 2.092164e-49 |
| MsG0480019164.01 | MsG0680032840.01 | -0.806834 | 6.783923e-50 | 3.719821e-47 |
| MsG0480019164.01 | MsG0680034255.01 | 0.802089 | 6.619657e-49 | 3.213927e-46 |
| MsG0480019164.01 | MsG0780038519.01 | 0.803219 | 3.870444e-49 | 1.934031e-46 |
| MsG0480019164.01 | MsG0780039859.01 | -0.809329 | 1.996908e-50 | 1.169062e-47 |
| MsG0480019164.01 | MsG0780039860.01 | -0.806729 | 7.142745e-50 | 3.905821e-47 |
| MsG0480019164.01 | MsG0780040437.01 | -0.816400 | 5.638819e-52 | 3.991474e-49 |
| MsG0480019164.01 | MsG0780040644.01 | -0.814121 | 1.810199e-51 | 1.204221e-48 |
| MsG0480019164.01 | MsG0780040805.01 | 0.815738 | 7.924883e-52 | 5.509393e-49 |
| MsG0480019164.01 | MsG0780040838.01 | -0.802181 | 6.337584e-49 | 3.084096e-46 |
| MsG0480019164.01 | MsG0780040894.01 | -0.802641 | 5.095707e-49 | 2.508975e-46 |
| MsG0480019164.01 | MsG0780040991.01 | 0.800445 | 1.436496e-48 | 6.689902e-46 |
| MsG0480019164.01 | MsG0780041106.01 | -0.800828 | 1.199767e-48 | 5.642036e-46 |
| MsG0480019164.01 | MsG0780041478.01 | -0.809344 | 1.982482e-50 | 1.161095e-47 |
| MsG0480019164.01 | MsG0880041978.01 | 0.805389 | 1.366818e-49 | 7.222012e-47 |
| MsG0480019164.01 | MsG0880043017.01 | 0.816801 | 4.585693e-52 | 3.281669e-49 |
| MsG0480019164.01 | MsG0880043032.01 | -0.806864 | 6.685509e-50 | 3.668731e-47 |
| MsG0480019164.01 | MsG0880043364.01 | 0.810070 | 1.383452e-50 | 8.259357e-48 |
| MsG0480019164.01 | MsG0880044312.01 | -0.804217 | 2.401499e-49 | 1.231170e-46 |
| MsG0480019164.01 | MsG0880045252.01 | -0.802014 | 6.859068e-49 | 3.323782e-46 |
| MsG0480019164.01 | MsG0880045261.01 | -0.809060 | 2.280208e-50 | 1.325324e-47 |
| MsG0480019164.01 | MsG0880045283.01 | -0.801577 | 8.433264e-49 | 4.041535e-46 |
| MsG0480019164.01 | MsG0880045778.01 | -0.809740 | 1.629453e-50 | 9.644601e-48 |
| MsG0480019164.01 | MsG0880046105.01 | -0.805252 | 1.459968e-49 | 7.686897e-47 |
| MsG0480019164.01 | MsG0880046462.01 | -0.826790 | 2.236335e-54 | 2.118396e-51 |
| MsG0480019164.01 | MsG0880046584.01 | -0.812778 | 3.572721e-51 | 2.291893e-48 |
| MsG0480019164.01 | MsG0880046639.01 | -0.818365 | 2.036475e-52 | 1.521396e-49 |
| MsG0480019164.01 | MsG0880047161.01 | -0.808549 | 2.933149e-50 | 1.681974e-47 |
| MsG0480019164.01 | MsG0880047363.01 | -0.814707 | 1.343178e-51 | 9.078249e-49 |
| MsG0480019164.01 | MsG0880047628.01 | -0.804388 | 2.212881e-49 | 1.139480e-46 |
| MsG0480019164.01 | MsG0880047661.01 | -0.813701 | 2.240689e-51 | 1.473745e-48 |
| MsG0480019164.01 | MsG0880047669.01 | -0.804132 | 2.501638e-49 | 1.279740e-46 |
| MsG0480019164.01 | MsG0880047670.01 | -0.820187 | 7.832176e-53 | 6.154443e-50 |
| MsG0480019164.01 | MsG0880047697.01 | 0.825003 | 5.939636e-54 | 5.347682e-51 |
| MsG0380015080.01 | MsG0480019164.01 | 0.802333 | 5.897049e-49 | 2.881048e-46 |
| MsG0380015130.01 | MsG0480019164.01 | 0.811982 | 5.331636e-51 | 3.348273e-48 |
| MsG0380015200.01 | MsG0480019164.01 | -0.801107 | 1.052396e-48 | 4.984337e-46 |
| MsG0380015271.01 | MsG0480019164.01 | -0.806992 | 6.281750e-50 | 3.458477e-47 |
| MsG0380015439.01 | MsG0480019164.01 | -0.809231 | 2.095735e-50 | 1.223743e-47 |
| MsG0380015659.01 | MsG0480019164.01 | 0.839896 | 1.204583e-57 | 1.687153e-54 |
| MsG0380015752.01 | MsG0480019164.01 | -0.813680 | 2.264537e-51 | 1.488582e-48 |
| MsG0380015974.01 | MsG0480019164.01 | -0.801052 | 1.079800e-48 | 5.107153e-46 |
| MsG0380016354.01 | MsG0480019164.01 | -0.801796 | 7.604433e-49 | 3.664626e-46 |
| MsG0380016751.01 | MsG0480019164.01 | -0.806674 | 7.334121e-50 | 4.004688e-47 |
| MsG0380016889.01 | MsG0480019164.01 | -0.801492 | 8.779167e-49 | 4.198344e-46 |
| MsG0380016896.01 | MsG0480019164.01 | -0.814006 | 1.919148e-51 | 1.272737e-48 |
| MsG0380017100.01 | MsG0480019164.01 | -0.807201 | 5.673716e-50 | 3.140803e-47 |
| MsG0380017532.01 | MsG0480019164.01 | -0.805193 | 1.502036e-49 | 7.896692e-47 |
| MsG0380017647.01 | MsG0480019164.01 | -0.811478 | 6.863471e-51 | 4.253126e-48 |
| MsG0380017895.01 | MsG0480019164.01 | -0.806113 | 9.632454e-50 | 5.185034e-47 |
| MsG0480018190.01 | MsG0480019164.01 | -0.802793 | 4.739247e-49 | 2.342730e-46 |
| MsG0280007136.01 | MsG0480019164.01 | -0.812108 | 5.003999e-51 | 3.153374e-48 |
| MsG0280007247.01 | MsG0480019164.01 | -0.818908 | 1.533467e-52 | 1.162950e-49 |
| MsG0280007649.01 | MsG0480019164.01 | -0.803249 | 3.815514e-49 | 1.908046e-46 |
| MsG0280007650.01 | MsG0480019164.01 | -0.800373 | 1.485897e-48 | 6.907557e-46 |
| MsG0280008287.01 | MsG0480019164.01 | 0.814193 | 1.745090e-51 | 1.163169e-48 |
| MsG0280009776.01 | MsG0480019164.01 | -0.804168 | 2.459275e-49 | 1.259219e-46 |
| MsG0280010281.01 | MsG0480019164.01 | -0.813391 | 2.620766e-51 | 1.709391e-48 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0480019164.01.T01 | MTR_4g024370 | 97.170 | 106 | 3 | 0 | 1 | 106 | 1 | 106 | 1.15e-72 | 216 |
| MsG0480019164.01.T01 | MTR_4g024370 | 97.170 | 106 | 3 | 0 | 1 | 106 | 1 | 106 | 1.15e-72 | 216 |
| MsG0480019164.01.T01 | MTR_5g011800 | 58.095 | 105 | 39 | 1 | 1 | 105 | 1 | 100 | 1.82e-37 | 126 |
| MsG0480019164.01.T01 | MTR_4g102220 | 56.731 | 104 | 36 | 1 | 1 | 104 | 1 | 95 | 7.04e-36 | 122 |
| MsG0480019164.01.T01 | MTR_5g011820 | 56.190 | 105 | 40 | 1 | 1 | 105 | 4 | 102 | 1.22e-33 | 116 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0480019164.01.T01 | AT2G45360 | 64.286 | 98 | 26 | 1 | 1 | 98 | 1 | 89 | 1.20e-36 | 124 |
| MsG0480019164.01.T01 | AT3G60780 | 60.638 | 94 | 28 | 1 | 1 | 94 | 1 | 85 | 1.76e-32 | 113 |
| MsG0480019164.01.T01 | AT1G62840 | 53.846 | 104 | 39 | 1 | 1 | 104 | 1 | 95 | 3.15e-26 | 97.4 |
| MsG0480019164.01.T01 | AT1G12320 | 52.000 | 100 | 39 | 1 | 1 | 100 | 1 | 91 | 2.73e-23 | 89.7 |
Find 37 sgRNAs with CRISPR-Local
Find 54 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATAACATTCTACGATGAATT+TGG | 0.250717 | 4:+15246405 | None:intergenic |
| TATACATCATGAAGCTTGTT+TGG | 0.316497 | 4:-15247155 | None:intergenic |
| AGGCCAACACTTGCGGCTAT+TGG | 0.324490 | 4:+15246370 | None:intergenic |
| TGTAATCTTGACCCTTCATC+TGG | 0.339388 | 4:+15246301 | None:intergenic |
| TGTGAGAAATTCAAGGAATC+TGG | 0.400122 | 4:-15246469 | MsG0480019164.01.T01:CDS |
| GGGATACACCCATCTCGGCT+AGG | 0.414592 | 4:+15246266 | None:intergenic |
| TATGCAGTGTGAGAAATTCA+AGG | 0.454346 | 4:-15246476 | MsG0480019164.01.T01:intron |
| GATGAATTTGGTGTTCCATC+CGG | 0.471577 | 4:+15246417 | None:intergenic |
| GGATACACCCATCTCGGCTA+GGG | 0.478620 | 4:+15246267 | None:intergenic |
| CACAAAAGCCCTAGCCGAGA+TGG | 0.481827 | 4:-15246275 | MsG0480019164.01.T01:CDS |
| TTGAGGTTGAAAGGTGCTTA+CGG | 0.505934 | 4:+15247089 | None:intergenic |
| ATTGATCTTACTTGTTGTTG+AGG | 0.510185 | 4:+15247072 | None:intergenic |
| GCGGTTGCTGCTCGCAACAC+CGG | 0.525122 | 4:-15246346 | MsG0480019164.01.T01:CDS |
| TGTTGCGAGCAGCAACCGCT+AGG | 0.535059 | 4:+15246350 | None:intergenic |
| TCACCGAGAACTATCTCCGT+GGG | 0.538377 | 4:+15246242 | None:intergenic |
| TACTTGTTGTTGAGGTTGAA+AGG | 0.550183 | 4:+15247080 | None:intergenic |
| ACAAAAGCCCTAGCCGAGAT+GGG | 0.552505 | 4:-15246274 | MsG0480019164.01.T01:CDS |
| GGTGTTCCATCCGGCTGCCA+TGG | 0.552686 | 4:+15246426 | None:intergenic |
| CTTCTATCATCCATGGCAGC+CGG | 0.557426 | 4:-15246436 | MsG0480019164.01.T01:CDS |
| ATCGTAGAATGTTATTCCCA+CGG | 0.567348 | 4:-15246397 | MsG0480019164.01.T01:CDS |
| TATGCACACGTGTCTTGCAC+CGG | 0.569145 | 4:+15246327 | None:intergenic |
| GTGTGCATAGTCCCAGATGA+AGG | 0.570105 | 4:-15246313 | MsG0480019164.01.T01:CDS |
| AACCGCTAGGCCAACACTTG+CGG | 0.573043 | 4:+15246363 | None:intergenic |
| GGTCCAATAGCCGCAAGTGT+TGG | 0.576902 | 4:-15246373 | MsG0480019164.01.T01:CDS |
| GTAATCTTGACCCTTCATCT+GGG | 0.578141 | 4:+15246302 | None:intergenic |
| AGCTGAGCTTCTATCATCCA+TGG | 0.578564 | 4:-15246443 | MsG0480019164.01.T01:CDS |
| TATCATCCATGGCAGCCGGA+TGG | 0.579782 | 4:-15246432 | MsG0480019164.01.T01:CDS |
| TGCGGCTATTGGACCGCCGT+GGG | 0.584383 | 4:+15246381 | None:intergenic |
| TTGCGGCTATTGGACCGCCG+TGG | 0.612852 | 4:+15246380 | None:intergenic |
| CCGAGAACTATCTCCGTGGG+GGG | 0.618245 | 4:+15246245 | None:intergenic |
| TGTGCATAGTCCCAGATGAA+GGG | 0.619561 | 4:-15246312 | MsG0480019164.01.T01:CDS |
| CGAGAACTATCTCCGTGGGG+GGG | 0.626603 | 4:+15246246 | None:intergenic |
| AGCCGCAAGTGTTGGCCTAG+CGG | 0.628784 | 4:-15246365 | MsG0480019164.01.T01:CDS |
| CACCGAGAACTATCTCCGTG+GGG | 0.644556 | 4:+15246243 | None:intergenic |
| TTCACCGAGAACTATCTCCG+TGG | 0.644732 | 4:+15246241 | None:intergenic |
| ACCGAGAACTATCTCCGTGG+GGG | 0.654535 | 4:+15246244 | None:intergenic |
| GTAGAATGTTATTCCCACGG+CGG | 0.814857 | 4:-15246394 | MsG0480019164.01.T01:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | CATAATATATATTGAAAAAT+TGG | + | Chr4:15246486-15246505 | None:intergenic | 10.0% |
| !! | TTAATATGGTATAATTATTT+GGG | - | Chr4:15246894-15246913 | MsG0480019164.01.T01:intron | 10.0% |
| !! | TTTAATATGGTATAATTATT+TGG | - | Chr4:15246893-15246912 | MsG0480019164.01.T01:intron | 10.0% |
| !! | AAAAGAAAAAATTTACAAAG+AGG | + | Chr4:15246458-15246477 | None:intergenic | 15.0% |
| !! | AAAGAAAAAATTTACAAAGA+GGG | + | Chr4:15246457-15246476 | None:intergenic | 15.0% |
| !! | AACTAAAATTGAAAAAAGAA+AGG | + | Chr4:15246433-15246452 | None:intergenic | 15.0% |
| !! | AAGAAAAAAAATTATACAAG+AGG | + | Chr4:15246726-15246745 | None:intergenic | 15.0% |
| !! | ACTAAAATTGAAAAAAGAAA+GGG | + | Chr4:15246432-15246451 | None:intergenic | 15.0% |
| !! | AGAAAAAAAATTATACAAGA+GGG | + | Chr4:15246725-15246744 | None:intergenic | 15.0% |
| !! | TAGTGATTATAATTTATTCT+TGG | + | Chr4:15246832-15246851 | None:intergenic | 15.0% |
| !!! | AAATTGATGATGTTTTAATA+TGG | - | Chr4:15246880-15246899 | MsG0480019164.01.T01:intron | 15.0% |
| !!! | TTTTAAGACAAATAACAACA+AGG | + | Chr4:15246861-15246880 | None:intergenic | 20.0% |
| ! | ATAACATTCTACGATGAATT+TGG | + | Chr4:15246997-15247016 | None:intergenic | 25.0% |
| ACGTAAACTTATGTGATTGA+AGG | + | Chr4:15246608-15246627 | None:intergenic | 30.0% | |
| ATACAAGAGGGAAATGAAAA+TGG | + | Chr4:15246713-15246732 | None:intergenic | 30.0% | |
| CATATTATGTGATGTGATTG+CGG | + | Chr4:15246775-15246794 | None:intergenic | 30.0% | |
| CGTAAACTTATGTGATTGAA+GGG | + | Chr4:15246607-15246626 | None:intergenic | 30.0% | |
| ! | AGTGTCTATGTAAGCTTTTA+AGG | + | Chr4:15246283-15246302 | None:intergenic | 30.0% |
| !! | ATTGATCTTACTTGTTGTTG+AGG | + | Chr4:15246330-15246349 | None:intergenic | 30.0% |
| AAAGGGACAAAGAAAGAAGA+AGG | + | Chr4:15246415-15246434 | None:intergenic | 35.0% | |
| AAGGGACAAAGAAAGAAGAA+GGG | + | Chr4:15246414-15246433 | None:intergenic | 35.0% | |
| ATCGTAGAATGTTATTCCCA+CGG | - | Chr4:15247002-15247021 | MsG0480019164.01.T01:intron | 35.0% | |
| CGCAATCACATCACATAATA+TGG | - | Chr4:15246773-15246792 | MsG0480019164.01.T01:intron | 35.0% | |
| GGGAAATGAAAATGGAAAAG+TGG | + | Chr4:15246705-15246724 | None:intergenic | 35.0% | |
| TATGCAGTGTGAGAAATTCA+AGG | - | Chr4:15246923-15246942 | MsG0480019164.01.T01:intron | 35.0% | |
| TGTGAGAAATTCAAGGAATC+TGG | - | Chr4:15246930-15246949 | MsG0480019164.01.T01:intron | 35.0% | |
| !! | TACTTGTTGTTGAGGTTGAA+AGG | + | Chr4:15246322-15246341 | None:intergenic | 35.0% |
| !!! | TAAGCTTTTAAGGCAGTTTC+TGG | + | Chr4:15246273-15246292 | None:intergenic | 35.0% |
| GTAATCTTGACCCTTCATCT+GGG | + | Chr4:15247100-15247119 | None:intergenic | 40.0% | |
| TGTAATCTTGACCCTTCATC+TGG | + | Chr4:15247101-15247120 | None:intergenic | 40.0% | |
| !! | GATGAATTTGGTGTTCCATC+CGG | + | Chr4:15246985-15247004 | None:intergenic | 40.0% |
| !! | TTGAGGTTGAAAGGTGCTTA+CGG | + | Chr4:15246313-15246332 | None:intergenic | 40.0% |
| AGCTGAGCTTCTATCATCCA+TGG | - | Chr4:15246956-15246975 | MsG0480019164.01.T01:intron | 45.0% | |
| GTAGAATGTTATTCCCACGG+CGG | - | Chr4:15247005-15247024 | MsG0480019164.01.T01:intron | 45.0% | |
| TGTGCATAGTCCCAGATGAA+GGG | - | Chr4:15247087-15247106 | MsG0480019164.01.T01:CDS | 45.0% | |
| ACAAAAGCCCTAGCCGAGAT+GGG | - | Chr4:15247125-15247144 | MsG0480019164.01.T01:CDS | 50.0% | |
| CTTCTATCATCCATGGCAGC+CGG | - | Chr4:15246963-15246982 | MsG0480019164.01.T01:intron | 50.0% | |
| GTGTGCATAGTCCCAGATGA+AGG | - | Chr4:15247086-15247105 | MsG0480019164.01.T01:CDS | 50.0% | |
| TATGCACACGTGTCTTGCAC+CGG | + | Chr4:15247075-15247094 | None:intergenic | 50.0% | |
| AACCGCTAGGCCAACACTTG+CGG | + | Chr4:15247039-15247058 | None:intergenic | 55.0% | |
| AGGCCAACACTTGCGGCTAT+TGG | + | Chr4:15247032-15247051 | None:intergenic | 55.0% | |
| CACAAAAGCCCTAGCCGAGA+TGG | - | Chr4:15247124-15247143 | MsG0480019164.01.T01:CDS | 55.0% | |
| GGATACACCCATCTCGGCTA+GGG | + | Chr4:15247135-15247154 | None:intergenic | 55.0% | |
| GGTCCAATAGCCGCAAGTGT+TGG | - | Chr4:15247026-15247045 | MsG0480019164.01.T01:intron | 55.0% | |
| TATCATCCATGGCAGCCGGA+TGG | - | Chr4:15246967-15246986 | MsG0480019164.01.T01:intron | 55.0% | |
| AGATGGGTGTATCCCCCCCA+CGG | - | Chr4:15247141-15247160 | MsG0480019164.01.T01:CDS | 60.0% | |
| GGGATACACCCATCTCGGCT+AGG | + | Chr4:15247136-15247155 | None:intergenic | 60.0% | |
| TGGGGGGGATACACCCATCT+CGG | + | Chr4:15247141-15247160 | None:intergenic | 60.0% | |
| TGTTGCGAGCAGCAACCGCT+AGG | + | Chr4:15247052-15247071 | None:intergenic | 60.0% | |
| !! | AGCCGCAAGTGTTGGCCTAG+CGG | - | Chr4:15247034-15247053 | MsG0480019164.01.T01:intron | 60.0% |
| GCGGTTGCTGCTCGCAACAC+CGG | - | Chr4:15247053-15247072 | MsG0480019164.01.T01:intron | 65.0% | |
| GGTGTTCCATCCGGCTGCCA+TGG | + | Chr4:15246976-15246995 | None:intergenic | 65.0% | |
| TGCGGCTATTGGACCGCCGT+GGG | + | Chr4:15247021-15247040 | None:intergenic | 65.0% | |
| TTGCGGCTATTGGACCGCCG+TGG | + | Chr4:15247022-15247041 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| Chr4 | gene | 15246252 | 15247169 | 15246252 | ID=MsG0480019164.01;Name=MsG0480019164.01 |
| Chr4 | mRNA | 15246252 | 15247169 | 15246252 | ID=MsG0480019164.01.T01;Parent=MsG0480019164.01;Name=MsG0480019164.01.T01;_AED=0.43;_eAED=0.43;_QI=0|0|0|1|1|1|2|0|108 |
| Chr4 | exon | 15247083 | 15247169 | 15247083 | ID=MsG0480019164.01.T01:exon:4949;Parent=MsG0480019164.01.T01 |
| Chr4 | exon | 15246252 | 15246491 | 15246252 | ID=MsG0480019164.01.T01:exon:4948;Parent=MsG0480019164.01.T01 |
| Chr4 | CDS | 15247083 | 15247169 | 15247083 | ID=MsG0480019164.01.T01:cds;Parent=MsG0480019164.01.T01 |
| Chr4 | CDS | 15246252 | 15246491 | 15246252 | ID=MsG0480019164.01.T01:cds;Parent=MsG0480019164.01.T01 |
| Gene Sequence |
| Protein sequence |
