AlfalfaGEDB | MsG0380014876.01

M. sativa cultivar ZhongmuNo.1 / MsG0380014876.01

KEGG: -
GO: -
PFAM: -

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0380014876.01.T01	AFK47174.1	90.588	85	7	1	8	92	289	372	4.23E-47	164

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0380014876.01.T01	P0C895	64.773	88	29	1	7	92	286	373	1.00E-32	119

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0380014876.01.T01	I3T3T2	90.588	85	7	1	8	92	289	372	2.02e-47	164

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
MsG0080048404.01	MsG0380014876.01	0.833482	5.200302e-56	5.996520e-53
MsG0080048463.01	MsG0380014876.01	0.800788	1.222599e-48	5.743374e-46
MsG0080048618.01	MsG0380014876.01	0.824182	9.272957e-54	8.153724e-51
MsG0080048784.01	MsG0380014876.01	0.821670	3.569016e-53	2.922596e-50
MsG0180000139.01	MsG0380014876.01	0.831252	1.854235e-55	2.000940e-52
MsG0180000145.01	MsG0380014876.01	0.804811	1.805749e-49	9.401261e-47
MsG0180000335.01	MsG0380014876.01	0.817124	3.880443e-52	2.801663e-49
MsG0180000470.01	MsG0380014876.01	0.802736	4.869182e-49	2.403430e-46
MsG0180000777.01	MsG0380014876.01	0.811935	5.458938e-51	3.423696e-48
MsG0180000835.01	MsG0380014876.01	0.841031	6.079388e-58	8.819656e-55

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0380014876.01.T01	MTR_3g465570	90.000	80	7	1	8	87	314	392	2.05e-46	152
MsG0380014876.01.T01	MTR_3g023830	38.961	77	46	1	15	90	184	260	1.55e-12	61.2

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0380014876.01.T01	AT2G30105	64.773	88	29	1	7	92	286	373	1.02e-33	119
MsG0380014876.01.T01	AT5G07910	38.462	78	47	1	15	91	185	262	4.03e-11	57.4

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Find 15 sgRNAs with CRISPR-Local

Find 21 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACAAATAGAATTCCGAGT+TGG	0.580256	3:+61834619	MsG0380014876.01.T01:CDS
AACTATTGATATACTTCGTC+AGG	0.413073	3:+61834435	MsG0380014876.01.T01:CDS
AAGATGCAAAGCCTGCATAA+TGG	0.530896	3:-61834326	None:intergenic
AATCTCTAGAAACTCCAACT+CGG	0.645232	3:-61834633	None:intergenic
CAATAGTTATTTCTGTATTA+TGG	0.188941	3:-61834420	None:intergenic
CACATTTGTGACCATTATGC+AGG	0.471749	3:+61834315	MsG0380014876.01.T01:CDS
CTGCATAATGGTCACAAATG+TGG	0.640523	3:-61834314	None:intergenic
CTTTGCATCTTAGTAACAAT+GGG	0.467481	3:+61834338	MsG0380014876.01.T01:CDS
GCTTTGCATCTTAGTAACAA+TGG	0.556237	3:+61834337	MsG0380014876.01.T01:CDS
GGTCACAAATGTGGAGTATA+AGG	0.332050	3:-61834305	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAACAAATAGAATTCCGAGT+TGG	+	Chr3:61834619-61834638	MsG0380014876.01.T01:CDS	30.0%
AACTATTGATATACTTCGTC+AGG	+	Chr3:61834435-61834454	MsG0380014876.01.T01:CDS	30.0%
CTTTGCATCTTAGTAACAAT+GGG	+	Chr3:61834338-61834357	MsG0380014876.01.T01:CDS	30.0%
GCATGACAGTAAAATATATG+TGG	+	Chr3:61834537-61834556	MsG0380014876.01.T01:intron	30.0%
TTTCTTTCAGTTTGAAGGAT+GGG	+	Chr3:61834561-61834580	MsG0380014876.01.T01:intron	30.0%
GCTTTGCATCTTAGTAACAA+TGG	+	Chr3:61834337-61834356	MsG0380014876.01.T01:CDS	35.0%
TTCTGTATTATGGAGATCCA+AGG	-	Chr3:61834413-61834432	None:intergenic	35.0%
AAGATGCAAAGCCTGCATAA+TGG	-	Chr3:61834329-61834348	None:intergenic	40.0%
CACATTTGTGACCATTATGC+AGG	+	Chr3:61834315-61834334	MsG0380014876.01.T01:CDS	40.0%
CTGCATAATGGTCACAAATG+TGG	-	Chr3:61834317-61834336	None:intergenic	40.0%

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Chromosome	Type	Strat	End	Strand	Name
Chr3	gene	61834289	61834681	61834289	ID=MsG0380014876.01;Name=MsG0380014876.01
Chr3	mRNA	61834289	61834681	61834289	ID=MsG0380014876.01.T01;Parent=MsG0380014876.01;Name=MsG0380014876.01.T01;_AED=0.50;_eAED=0.54;_QI=0\|0\|0\|1\|1\|1\|2\|0\|92
Chr3	exon	61834289	61834456	61834289	ID=MsG0380014876.01.T01:exon:6393;Parent=MsG0380014876.01.T01
Chr3	exon	61834571	61834681	61834571	ID=MsG0380014876.01.T01:exon:6394;Parent=MsG0380014876.01.T01
Chr3	CDS	61834289	61834456	61834289	ID=MsG0380014876.01.T01:cds;Parent=MsG0380014876.01.T01
Chr3	CDS	61834571	61834681	61834571	ID=MsG0380014876.01.T01:cds;Parent=MsG0380014876.01.T01

Gene Sequence	>MsG0380014876.01.T01 ATGCTAACTTTTCTTGCCTTATACTCCACATTTGTGACCATTATGCAGGCTTTGCATCTTAGTAACAATGGGATGAAATCTCTGCCATCAAAACTATTCAAGACTTGCTTGCAGCTTTCCACCTTGGATCTCCATAATACAGAAATAACTATTGATATACTTCGTCAGTTTGAAGGATGGGACAGTTTTGATGAGCGCCGTCGCTCAAAGCATCAGAAACAAATAGAATTCCGAGTTGGAGTTTCTAGAGATTTTGATGAAGGTGCTGATAAAAACTAA
Protein sequence	>MsG0380014876.01.T01 MLTFLALYSTFVTIMQALHLSNNGMKSLPSKLFKTCLQLSTLDLHNTEITIDILRQFEGWDSFDERRRSKHQKQIEFRVGVSRDFDEGADKN*