AlfalfaGEDB | MsG0780036387.01

M. sativa cultivar ZhongmuNo.1 / MsG0780036387.01

KEGG: K05391
GO: GO:0005216 GO:0006811 GO:0016020 GO:0055085
PFAM: PF00520

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0780036387.01.T01	RDX61794.1	72.268	851	114	13	1	845	1	735	0	1154

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0780036387.01.T01	O65718	71.094	512	86	4	344	845	267	726	0	714

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0780036387.01.T01	A0A371E6Y6	72.268	851	114	13	1	845	1	735	0.0	1154

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
MsG0080048068.01	MsG0780036387.01	0.804398	2.201973e-49	1.134143e-46
MsG0080049078.01	MsG0780036387.01	0.824770	6.742955e-54	6.030665e-51
MsG0080049079.01	MsG0780036387.01	0.815654	8.275007e-52	5.739396e-49
MsG0180003146.01	MsG0780036387.01	0.826910	2.093077e-54	1.989832e-51
MsG0180003198.01	MsG0780036387.01	0.811153	8.071378e-51	4.958759e-48
MsG0180003949.01	MsG0780036387.01	0.830530	2.788129e-55	2.945312e-52
MsG0180004987.01	MsG0780036387.01	0.844423	7.630237e-59	1.231256e-55
MsG0280006566.01	MsG0780036387.01	0.800620	1.322964e-48	6.188610e-46
MsG0280008835.01	MsG0780036387.01	0.800085	1.700320e-48	7.846652e-46
MsG0280010198.01	MsG0780036387.01	0.809482	1.851509e-50	1.088326e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0780036387.01.T01	MTR_7g012260	84.848	528	19	4	324	845	238	710	0.0	896
MsG0780036387.01.T01	MTR_7g012260	95.816	239	10	0	1	239	1	239	4.60e-156	473
MsG0780036387.01.T01	MTR_8g464570	47.710	524	203	8	333	842	201	667	7.71e-167	500
MsG0780036387.01.T01	MTR_8g464570	44.961	129	67	3	110	237	63	188	1.53e-22	103
MsG0780036387.01.T01	MTR_2g081110	45.677	532	217	9	324	842	191	663	2.06e-154	468
MsG0780036387.01.T01	MTR_2g081110	39.552	134	71	4	106	237	59	184	5.20e-18	89.4
MsG0780036387.01.T01	MTR_4g130820	34.792	480	248	7	333	807	237	656	2.61e-84	285
MsG0780036387.01.T01	MTR_4g130820	41.322	121	68	2	108	228	98	215	5.02e-18	89.4
MsG0780036387.01.T01	MTR_1g028370	32.573	482	252	10	336	810	224	639	1.52e-81	277
MsG0780036387.01.T01	MTR_1g028370	36.296	135	83	2	102	236	76	207	2.73e-18	90.5

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0780036387.01.T01	AT5G15410	71.094	512	86	4	344	845	266	725	0.0	714
MsG0780036387.01.T01	AT5G15410	72.139	201	51	4	42	239	45	243	3.53e-81	276
MsG0780036387.01.T01	AT5G15410	71.094	512	86	4	344	845	267	726	0.0	714
MsG0780036387.01.T01	AT5G15410	72.000	200	53	3	42	239	46	244	4.33e-81	276
MsG0780036387.01.T01	AT5G54250	48.743	517	192	7	339	841	230	687	1.92e-169	507
MsG0780036387.01.T01	AT5G54250	37.748	151	87	4	92	237	62	210	1.00e-19	95.1
MsG0780036387.01.T01	AT5G54250	48.743	517	192	7	339	841	230	687	1.92e-169	507
MsG0780036387.01.T01	AT5G54250	37.748	151	87	4	92	237	62	210	1.00e-19	95.1
MsG0780036387.01.T01	AT5G54250	48.743	517	192	7	339	841	230	687	1.92e-169	507
MsG0780036387.01.T01	AT5G54250	37.748	151	87	4	92	237	62	210	1.00e-19	95.1

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Find 245 sgRNAs with CRISPR-Local

Find 541 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAATAAATAAAACCAATCA+TGG	0.445625	7:+7409172	None:intergenic
AAAGAGAGAAATAGTGATTC+AGG	0.258928	7:-7409027	MsG0780036387.01.T01:three_prime_UTR
AAAGAGAGAGTGAGAGGGTA+GGG	0.376961	7:+7416492	None:intergenic
AAAGTCACAGGCTACATCTT+TGG	0.371386	7:-7412032	MsG0780036387.01.T01:CDS
AAATGAAAGAGAGAGTGAGA+GGG	0.589568	7:+7416487	None:intergenic
AAATGAGAGGCTAAAGAGAA+CGG	0.608060	7:-7409518	MsG0780036387.01.T01:CDS
AAATTTCTAACCTGAGGAAC+AGG	0.441776	7:+7415172	None:intergenic
AACAATTTCAAAGGTCTGAA+GGG	0.501465	7:+7409088	None:intergenic
AACTCAGCGAACCCGCGTAC+GGG	0.478510	7:+7413731	None:intergenic
AACTGTTTCATACTCAAACA+TGG	0.618051	7:-7410518	MsG0780036387.01.T01:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAACACTTGTCAAACTGTTT+GGG	-	Chr7:7414311-7414330	MsG0780036387.01.T01:intron	30.0%
AAAGAGAGAAATAGTGATTC+AGG	-	Chr7:7416562-7416581	MsG0780036387.01.T01:five_prime_UTR	30.0%
AAATAAGCCAATTTACCTGA+GGG	+	Chr7:7414259-7414278	None:intergenic	30.0%
AACAAACCAAACACTAATCA+CGG	+	Chr7:7411888-7411907	None:intergenic	30.0%
AACAATTTCAAAGGTCTGAA+GGG	+	Chr7:7416504-7416523	None:intergenic	30.0%
AACTGTTTCATACTCAAACA+TGG	-	Chr7:7415071-7415090	MsG0780036387.01.T01:intron	30.0%
AATGGAAAATTTCTAACCTG+AGG	+	Chr7:7410426-7410445	None:intergenic	30.0%
ACAAAAAGATACAAAGACTG+GGG	+	Chr7:7411995-7412014	None:intergenic	30.0%
ACAAATATGGGATTTACCAA+TGG	-	Chr7:7414163-7414182	MsG0780036387.01.T01:CDS	30.0%
ATAATTTATAGGTTGCTGGA+GGG	-	Chr7:7413938-7413957	MsG0780036387.01.T01:CDS	30.0%

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Chromosome	Type	Strat	End	Strand	Name
Chr7	gene	7408905	7416706	7408905	ID=MsG0780036387.01;Name=MsG0780036387.01
Chr7	mRNA	7408905	7416706	7408905	ID=MsG0780036387.01.T01;Parent=MsG0780036387.01;Name=MsG0780036387.01.T01;_AED=0.36;_eAED=0.39;_QI=280\|0.55\|0.5\|1\|0.88\|0.9\|10\|428\|845
Chr7	exon	7408905	7409818	7408905	ID=MsG0780036387.01.T01:exon:3939;Parent=MsG0780036387.01.T01
Chr7	exon	7409945	7410031	7409945	ID=MsG0780036387.01.T01:exon:3938;Parent=MsG0780036387.01.T01
Chr7	exon	7410251	7410549	7410251	ID=MsG0780036387.01.T01:exon:3937;Parent=MsG0780036387.01.T01
Chr7	exon	7410751	7410956	7410751	ID=MsG0780036387.01.T01:exon:3936;Parent=MsG0780036387.01.T01
Chr7	exon	7411349	7411662	7411349	ID=MsG0780036387.01.T01:exon:3935;Parent=MsG0780036387.01.T01
Chr7	exon	7411977	7412090	7411977	ID=MsG0780036387.01.T01:exon:3934;Parent=MsG0780036387.01.T01
Chr7	exon	7413743	7414005	7413743	ID=MsG0780036387.01.T01:exon:3933;Parent=MsG0780036387.01.T01
Chr7	exon	7414154	7414238	7414154	ID=MsG0780036387.01.T01:exon:3932;Parent=MsG0780036387.01.T01
Chr7	exon	7415183	7415840	7415183	ID=MsG0780036387.01.T01:exon:3931;Parent=MsG0780036387.01.T01
Chr7	exon	7416401	7416706	7416401	ID=MsG0780036387.01.T01:exon:3930;Parent=MsG0780036387.01.T01
Chr7	five_prime_UTR	7416427	7416706	7416427	ID=MsG0780036387.01.T01:five_prime_utr;Parent=MsG0780036387.01.T01
Chr7	CDS	7416401	7416426	7416401	ID=MsG0780036387.01.T01:cds;Parent=MsG0780036387.01.T01
Chr7	CDS	7415183	7415840	7415183	ID=MsG0780036387.01.T01:cds;Parent=MsG0780036387.01.T01
Chr7	CDS	7414154	7414238	7414154	ID=MsG0780036387.01.T01:cds;Parent=MsG0780036387.01.T01
Chr7	CDS	7413743	7414005	7413743	ID=MsG0780036387.01.T01:cds;Parent=MsG0780036387.01.T01
Chr7	CDS	7411977	7412090	7411977	ID=MsG0780036387.01.T01:cds;Parent=MsG0780036387.01.T01
Chr7	CDS	7411349	7411662	7411349	ID=MsG0780036387.01.T01:cds;Parent=MsG0780036387.01.T01
Chr7	CDS	7410751	7410956	7410751	ID=MsG0780036387.01.T01:cds;Parent=MsG0780036387.01.T01
Chr7	CDS	7410251	7410549	7410251	ID=MsG0780036387.01.T01:cds;Parent=MsG0780036387.01.T01
Chr7	CDS	7409945	7410031	7409945	ID=MsG0780036387.01.T01:cds;Parent=MsG0780036387.01.T01
Chr7	CDS	7409333	7409818	7409333	ID=MsG0780036387.01.T01:cds;Parent=MsG0780036387.01.T01
Chr7	three_prime_UTR	7408905	7409332	7408905	ID=MsG0780036387.01.T01:three_prime_utr;Parent=MsG0780036387.01.T01

Gene Sequence

>MsG0780036387.01.T01

ATGCCCACCTTCTCCTCTCTCCCTAGGTGGATTGGTGGAAAATTCTTGGGAAGGAATCCTAGCAACACAATCAACAACGTTGGTGACAGCAGTGATGACCCTGGAGTTGCCGTCTCAGCAGACGACAACCCAGTAATCAGCATGGTGGAGTGTTACGCATGCACACAAGTTGGTGTGCCAGTGTTCCACTCCACCAGCTGTGCAGACAGTTGTCACCAACCCGAATGGGAAGCGTCCGCCGGTTCCTATCTAGTTCCAATCCAAAACCGTCCCGGAAAATTCGCAAGAGCAGTATCAAAGCCGAATTGGGGAGTTTTAGGCAAAGTATTAGATCCAAGAAGCAAGCGCGTGCAATTATCCAACCGCGCGTTGTTGTTGGCGCGTGGGGTTGCTCTAGCTATTGATCCGTTGTTTTTCTACGCGCTGTCGATAGGAAGAGAAGGGTCGCCGTGTTTGTATATGGACGGTGGTTTAGCGGCTGTTGTTACGGTGGCGCGTACGGTGGTTGATGCGGTGCATTTGTTTCATGTTTGGTTGCAGTTTAGATTAGCGTATGTGTCGAGAGAATCACTTGTTGTTGGATGTGGGAAACTCGTGTGGGACGCACGTGCCATTGCTTCTCATTATATGAGATCTTTCAAAGGTTTTTGGTTTGATGTTTTTGTTATTCTTCCTGTTCCTCAGGGTCGTTTGGTACTTCTGATTCCGGCGGCTGTGATGTGCTTGTATCGTTCGTTGTTGTGTTTCAGATCAGAGACTATGGGTGACGGTCTGTTGAGATCTGCAGGTCTCAAGGTGACAGGTTTACCTCCACTCTCCGGTTTTCTTATCCGTCTCAGTTATATGGCTGATCTCGGATTGTTAAGCTCGAAAGAGCGTCTAAGCCTGCTGTTTTGGTCAGGGGGTTGCTGGTACGTGGATTTTGATACCGTGTTGACGGTCGATCCATTCGCCAACTTAAAACTCTTCTTGATCCGTTTACAACGTTCACTCTTCATCTTTTTTGTAACTTGGTTTCGCGCCCGTACGCGGGTTTACCATAGCATATCTATGATGAGAAGAATGCAAAAAGTCACAGGCTACATCTTTGGCACCATTTGGTGGGGATTTGGACTCAATCTCATTGCTTATTTCATTGCTTCTCACGTTGCTGGAGGGTGTTGGTATGTTCTTGCGATTCAACGCGTTGCATCATGCCTTCAACAGCAGTGTGAAAGAACCATTGGATGCAATCTTTCTTTGGCATGTTCAGAGGAGGTATGCTATAAGTCCTTGTTACCAGAAGGAACGATTGGAAATCCATGCGGTGGAAACTCAACGATGATGTCGAAGCCTATGTGTTTAGATGTTGACGGACCGTACAAATATGGGATTTACCAATGGGCACTTCCAGTCATATCCAGCAATTCCTTGGCTGTCAAGATTCTTTATCCCATTTTTTGGGGTTTGATGACCCTCAGCACTTTTGGAAATGATCTTGAACCCACAAGTAACTGGCTAGAAGTGATTTTTAGCATATGCATTGTACTCGCTGGACTATTACTTTTCACTTTGTTGATCGGAAACATTCAGGTATCCGAAGTAGATTATTATTGGATTTGGATTGCAGACAATCACAACTCGCACATTCACGCAATCAGCACATTGGTTGGATCAAGAACAGCCGTTATTGAAAAACTGTTTCATACTCAAACATGGTCTAACAATGAGACTATTTCTACTATGAAGGTATTCCTACATGCAGTCATGGCAAAGAAGAGAAAGATGCAGCTGAGATGTCGTGACATGGAATGGTGGATGAGGAGGAGGCAGTTGCCGTCCCGATTAAGACAAAGAGTTCGGCATTTTGAACGTCAGAGATGGGCGGCCATGGGAGGAGAAGATGAAATGGAACTGATCAAAGACTTACCTGAGGGTTTGAGGAGAGACATCAAGCGCCACCTTTGCTTGGACCTCATCAAAAAGGTACCATTGTTTCACAACTTGGATGATCTTATTCTTGACAACATCTGTGACAGGGTGAAGCCTTTAGTCTTCTCTCGAGATGAAAAGATAATTAGAGAAGGTGATCCTGTACCGAGGATGGTGTTCATTGTTCGTGGACGCATAAAGCGAAACCAAAGTCTAAGCAAAGGCATTGTAGCAACTAGTGTCCTCGAACCAGGAGGTTTCTTAGGCGATGAACTACTTTCTTGGTGCCTTAGACGCCCTTTTATCGACCGGCTTCCAGCTTCCTCAGCCACATTTGTTTGTCTTGAATCAACTGAAGCATTCGGTCTTGATGCTCAAAACTTAAGGTACATAACCGATCATTTCCGGTACAAATTCGCAAATGAGAGGCTAAAGAGAACGGCAAGATACTACTCATCGAATTGGAGAACATGGGCTGCGGTTAATATTCAACTTGCTTATAGACGTTACAGGCAGAGGACTAGAGGTCCAGTGACTCCTGTAAGGGATAATGGAGGCACTGAGCGTAGGCTCATGCAGTATGCTGCAATGTTCATGTCAATTAGGCCACATGATCATCTTGAATGA

Protein sequence

>MsG0780036387.01.T01

MPTFSSLPRWIGGKFLGRNPSNTINNVGDSSDDPGVAVSADDNPVISMVECYACTQVGVPVFHSTSCADSCHQPEWEASAGSYLVPIQNRPGKFARAVSKPNWGVLGKVLDPRSKRVQLSNRALLLARGVALAIDPLFFYALSIGREGSPCLYMDGGLAAVVTVARTVVDAVHLFHVWLQFRLAYVSRESLVVGCGKLVWDARAIASHYMRSFKGFWFDVFVILPVPQGRLVLLIPAAVMCLYRSLLCFRSETMGDGLLRSAGLKVTGLPPLSGFLIRLSYMADLGLLSSKERLSLLFWSGGCWYVDFDTVLTVDPFANLKLFLIRLQRSLFIFFVTWFRARTRVYHSISMMRRMQKVTGYIFGTIWWGFGLNLIAYFIASHVAGGCWYVLAIQRVASCLQQQCERTIGCNLSLACSEEVCYKSLLPEGTIGNPCGGNSTMMSKPMCLDVDGPYKYGIYQWALPVISSNSLAVKILYPIFWGLMTLSTFGNDLEPTSNWLEVIFSICIVLAGLLLFTLLIGNIQVSEVDYYWIWIADNHNSHIHAISTLVGSRTAVIEKLFHTQTWSNNETISTMKVFLHAVMAKKRKMQLRCRDMEWWMRRRQLPSRLRQRVRHFERQRWAAMGGEDEMELIKDLPEGLRRDIKRHLCLDLIKKVPLFHNLDDLILDNICDRVKPLVFSRDEKIIREGDPVPRMVFIVRGRIKRNQSLSKGIVATSVLEPGGFLGDELLSWCLRRPFIDRLPASSATFVCLESTEAFGLDAQNLRYITDHFRYKFANERLKRTARYYSSNWRTWAAVNIQLAYRRYRQRTRGPVTPVRDNGGTERRLMQYAAMFMSIRPHDHLE*