AlfalfaGEDB | MsG0380015602.01

M. sativa cultivar ZhongmuNo.1 / MsG0380015602.01

KEGG: K00889
GO: GO:0005524 GO:0016307 GO:0016308 GO:0046488
PFAM: PF01504 PF02493

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0380015602.01.T01	XP_003601106.1	94.294	666	13	4	1	644	63	725	0	1279

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0380015602.01.T01	Q8L796	70.222	675	158	8	1	643	83	746	0	941

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0380015602.01.T01	G7J3M3	94.294	666	13	4	1	644	63	725	0.0	1279

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
MsG0080048777.01	MsG0380015602.01	0.806827	6.808530e-50	3.732528e-47
MsG0080048801.01	MsG0380015602.01	0.807515	4.868772e-50	2.717305e-47
MsG0080048876.01	MsG0380015602.01	0.809479	1.853815e-50	1.089612e-47
MsG0080049015.01	MsG0380015602.01	0.800455	1.429478e-48	6.658840e-46
MsG0080049029.01	MsG0380015602.01	0.824988	5.990132e-54	5.390569e-51
MsG0080049039.01	MsG0380015602.01	0.820849	5.520150e-53	4.418051e-50
MsG0080049054.01	MsG0380015602.01	0.806793	6.922374e-50	3.791640e-47
MsG0080049078.01	MsG0380015602.01	0.819361	1.209374e-52	9.285767e-50
MsG0180000193.01	MsG0380015602.01	0.812801	3.531840e-51	2.266947e-48
MsG0180000325.01	MsG0380015602.01	0.823229	1.550297e-53	1.326950e-50

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0380015602.01.T01	MTR_3g073100	94.294	666	13	4	1	644	63	725	0.0	1279
MsG0380015602.01.T01	MTR_5g459450	73.185	675	125	8	2	644	76	726	0.0	976
MsG0380015602.01.T01	MTR_3g097260	61.435	669	198	11	2	643	62	697	0.0	764
MsG0380015602.01.T01	MTR_8g095170	57.101	676	203	13	2	643	37	659	0.0	725
MsG0380015602.01.T01	MTR_1g050740	49.162	716	273	13	6	643	71	773	0.0	629
MsG0380015602.01.T01	MTR_1g050740	30.159	189	56	5	66	184	62	244	3.30e-15	80.1
MsG0380015602.01.T01	MTR_8g095170	57.857	560	178	10	2	529	37	570	0.0	625
MsG0380015602.01.T01	MTR_8g039100	48.930	701	273	13	7	643	64	743	0.0	600
MsG0380015602.01.T01	MTR_8g039100	31.496	127	63	2	65	167	53	179	1.97e-12	70.9
MsG0380015602.01.T01	MTR_8g039100	35.238	105	66	2	84	186	49	153	9.27e-11	65.5

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0380015602.01.T01	AT1G77740	70.222	675	158	8	1	643	83	746	0.0	941
MsG0380015602.01.T01	AT1G77740	70.222	675	158	8	1	643	83	746	0.0	941
MsG0380015602.01.T01	AT1G21980	68.750	672	172	8	1	643	82	744	0.0	919
MsG0380015602.01.T01	AT2G26420	52.819	674	251	14	9	643	66	711	0.0	673
MsG0380015602.01.T01	AT2G26420	52.819	674	251	14	9	643	66	711	0.0	673
MsG0380015602.01.T01	AT2G26420	52.303	673	242	13	9	643	66	697	0.0	665
MsG0380015602.01.T01	AT3G56960	48.870	708	266	16	10	643	86	771	0.0	636
MsG0380015602.01.T01	AT3G56960	38.000	100	60	2	89	186	73	172	2.77e-11	67.4
MsG0380015602.01.T01	AT3G56960	48.870	708	266	16	10	643	86	771	0.0	636
MsG0380015602.01.T01	AT3G56960	38.000	100	60	2	89	186	73	172	2.77e-11	67.4

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Find 183 sgRNAs with CRISPR-Local

Find 306 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAATATAGAACAACATCAT+AGG	0.485216	3:-72398422	None:intergenic
AAAATGGCTCATCCCAAGAC+TGG	0.564949	3:-72398377	None:intergenic
AAAGAAAGCTCAAATTGATT+CGG	0.400300	3:+72398688	MsG0380015602.01.T01:three_prime_UTR
AAATGCGCGGATACTTTACT+TGG	0.507314	3:+72398999	MsG0380015602.01.T01:three_prime_UTR
AACAACACACCAAACGGATC+AGG	0.483095	3:+72395299	MsG0380015602.01.T01:CDS
AACCTCTTCGAGTAAAGCTT+TGG	0.403371	3:-72398544	None:intergenic
AACGATGGTTGTATCTACGA+AGG	0.690640	3:+72395335	MsG0380015602.01.T01:CDS
AACGGTGTTATTAACGGAAG+AGG	0.520673	3:+72395641	MsG0380015602.01.T01:CDS
AACTCCATCGATTGATGTGG+TGG	0.582178	3:-72396335	None:intergenic
AAGAAAGCTCAAATTGATTC+GGG	0.435818	3:+72398689	MsG0380015602.01.T01:three_prime_UTR

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAAACGGGAATGAGTATAT+TGG	+	Chr3:72395608-72395627	MsG0380015602.01.T01:CDS	30.0%
AATGTTGTCATGAATCATGA+TGG	+	Chr3:72398629-72398648	MsG0380015602.01.T01:CDS	30.0%
AATTATCTTTAGCAAGTAGG+TGG	+	Chr3:72398009-72398028	MsG0380015602.01.T01:intron	30.0%
ACACAAGGAGAATAATGTTA+TGG	+	Chr3:72396545-72396564	MsG0380015602.01.T01:intron	30.0%
ACTTGTGACAAAATTCTATG+GGG	+	Chr3:72396904-72396923	MsG0380015602.01.T01:CDS	30.0%
AGAAGAATATTCAAGAGGAA+AGG	+	Chr3:72395573-72395592	MsG0380015602.01.T01:CDS	30.0%
AGTTTCGTTCTTTACATTTC+TGG	+	Chr3:72396510-72396529	MsG0380015602.01.T01:intron	30.0%
ATTATCTTTAGCAAGTAGGT+GGG	+	Chr3:72398010-72398029	MsG0380015602.01.T01:intron	30.0%
ATTTGTATTTGGGAATCTGA+TGG	+	Chr3:72395899-72395918	MsG0380015602.01.T01:CDS	30.0%
CAATAGACTGTTTGATTAAC+AGG	+	Chr3:72398732-72398751	MsG0380015602.01.T01:three_prime_UTR	30.0%

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Chromosome	Type	Strat	End	Strand	Name
Chr3	gene	72395281	72399072	72395281	ID=MsG0380015602.01;Name=MsG0380015602.01
Chr3	mRNA	72395281	72399072	72395281	ID=MsG0380015602.01.T01;Parent=MsG0380015602.01;Name=MsG0380015602.01.T01;_AED=0.22;_eAED=0.22;_QI=0\|0.71\|0.75\|1\|1\|1\|8\|424\|665
Chr3	exon	72395281	72396119	72395281	ID=MsG0380015602.01.T01:exon:24024;Parent=MsG0380015602.01.T01
Chr3	exon	72396226	72396390	72396226	ID=MsG0380015602.01.T01:exon:24025;Parent=MsG0380015602.01.T01
Chr3	exon	72396581	72396746	72396581	ID=MsG0380015602.01.T01:exon:24026;Parent=MsG0380015602.01.T01
Chr3	exon	72396848	72396958	72396848	ID=MsG0380015602.01.T01:exon:24027;Parent=MsG0380015602.01.T01
Chr3	exon	72397050	72397243	72397050	ID=MsG0380015602.01.T01:exon:24028;Parent=MsG0380015602.01.T01
Chr3	exon	72397390	72397466	72397390	ID=MsG0380015602.01.T01:exon:24029;Parent=MsG0380015602.01.T01
Chr3	exon	72397560	72397653	72397560	ID=MsG0380015602.01.T01:exon:24030;Parent=MsG0380015602.01.T01
Chr3	exon	72398297	72399072	72398297	ID=MsG0380015602.01.T01:exon:24031;Parent=MsG0380015602.01.T01
Chr3	CDS	72395281	72396119	72395281	ID=MsG0380015602.01.T01:cds;Parent=MsG0380015602.01.T01
Chr3	CDS	72396226	72396390	72396226	ID=MsG0380015602.01.T01:cds;Parent=MsG0380015602.01.T01
Chr3	CDS	72396581	72396746	72396581	ID=MsG0380015602.01.T01:cds;Parent=MsG0380015602.01.T01
Chr3	CDS	72396848	72396958	72396848	ID=MsG0380015602.01.T01:cds;Parent=MsG0380015602.01.T01
Chr3	CDS	72397050	72397243	72397050	ID=MsG0380015602.01.T01:cds;Parent=MsG0380015602.01.T01
Chr3	CDS	72397390	72397466	72397390	ID=MsG0380015602.01.T01:cds;Parent=MsG0380015602.01.T01
Chr3	CDS	72397560	72397653	72397560	ID=MsG0380015602.01.T01:cds;Parent=MsG0380015602.01.T01
Chr3	CDS	72398297	72398648	72398297	ID=MsG0380015602.01.T01:cds;Parent=MsG0380015602.01.T01
Chr3	three_prime_UTR	72398649	72399072	72398649	ID=MsG0380015602.01.T01:three_prime_utr;Parent=MsG0380015602.01.T01

Gene Sequence

>MsG0380015602.01.T01

ATGGGAACTTTCTCCGGCAACAACACACCAAACGGATCAGGAAAATACAAATGGAACGATGGTTGTATCTACGAAGGTGAATGGAAACGAGGTAAAGCTTCCGGAAATGGAAAATTCTCGTGGCCTTCAGGTTCTATTTACGAAGGCGAGTTTAAGTTAGGTAAAATGGAAGGTTCTGGAACTTTTACTGGATCCGACGGAGATATTTACAGTGGTTCATGGAGTTCCGATAGAAAAAACGGTTACGGAAAGAAACGTTACGGTAACGGAGATTATTATGAAGGTTGGTGGAAGAAGAATATTCAAGAGGAAAGGGAGGTAGTTTGGAAAAACGGGAATGAGTATATTGGTGAATGGAAGAACGGTGTTATTAACGGAAGAGGAACGCTTGTTTGGTTGAATGGGAATCGTTATGAAGGTGAATGGGAAAATGGTGTTCCGAAAGGGCAAGGTGTGTTTACTTGGCCTGATGGAAGTTGCTATGTTGGGAATTGGAATAATAATAATAATAATGATTTTGAATCTTCTTTATTGAATGGGAGTTTTTATCCTGGTGATGATTTTGCTGTGACAATGAGAAAAAGGTGTTTTGTTGAAGGTGGAAAGGATTTTGGGAAGATTTGTATTTGGGAATCTGATGGTGAAAAAGGTGATATAACTTGTGATATTGTTGATAATGTATCGGTGTTGAATAGGATTGGAAGTGAAAGTGTTTCAGATCCCAAAGAGATTAAGCAGTTTCGACGGAATTCTGGTTGTTTTGCTTCCGAGGTTAAGAGACCGGGTGAAACTATATGTAAGGGGCATAAGAATTATGATCTTATGCTTAATCTCAATTGGCACTCTGTTGGAAAGGAAGCTTCTATATCGAGAGAGCTAATACCAAGTGATTTTGATTTGAAGGAGAAATTTTGGACTAGGTTTCCTTCTGAAGGATCTAAGATTACGCCACCACATCAATCGATGGAGTTCCGTTGGAAGGATTACTGCCCTATGGTTTTTAGACAATTGAGGAAGCGATTTCAGGTGGATCCTGCTGATTACATGTTAGCTATTTGTGGAAATGCTGCCCTCAGGGAGCTTTCATCTCCTGGCAAAAGTGGAAGCTTCTTCTACTTGACCCAAGATGACAGATTTATGATTAAGACAGTGAAAAAATCCGAAGTCAAGGTACTTCTTCGGATGCTTCGAAGTTATTACGAACATGTTTCTCAATATGAGGATTCACTTGTGACAAAATTCTATGGGGTACATTGTGTCAAACCAATTGGAGGCCAGAAGACCCGGTTCATCGTGATGGGCAATCTTTTCTGCTCGGAATATCCAATCCATAGACGATTTGACTTGAAGGGATCGTCACATGGCCGTATGACAGATAAGACTGAAGATGAAATTGATGAAACTACCACCCTCAAAGACCTCGATCTCAATTTTGTGTTTCGCCTGCAAAGAAATTGGTTCAAAGATCTCATCACTCTTTTGGTCGGCGTTCATTTTCGTGATGATAATACTTGTGACAAAATGGGATTATCACCATTTTTTTTGCGCACTGGAAAGCATGACTCTTATCAGAGTGAAAAGTTTATGCGTGGTTATCGCTTCCTTGAAGCAGAGCTACAAGACAGGGATAGAGTCAAATCTGGCCGGAAATCATTGATTAGGTTAGGAGCAAATATGCCAGCAAGAGCAGAGCGCATGGCTCGGAGGAGTGATTTTGACCAATACACCAGTCTTGGGATGAGCCATTTTACTCCTTGTCGCATTGGGGAGACCTATGATGTTGTTCTATATTTTGGGATTATAGACATTTTGCAAGATTACGACATCAGCAAGAAGCTGGAGCATGCATACAAGTCACTGCAGGTTGACCCTTCATCAATCTCAGCCGTTGATCCAAAGCTTTACTCGAAGAGGTTTCGTGATTTCGTGGGAGAATATTCAGCGAGGACCGTAGCATCGAGTATGAAACAAAGGTGTAAATGTTGTCATGAATCATGA

Protein sequence

>MsG0380015602.01.T01

MGTFSGNNTPNGSGKYKWNDGCIYEGEWKRGKASGNGKFSWPSGSIYEGEFKLGKMEGSGTFTGSDGDIYSGSWSSDRKNGYGKKRYGNGDYYEGWWKKNIQEEREVVWKNGNEYIGEWKNGVINGRGTLVWLNGNRYEGEWENGVPKGQGVFTWPDGSCYVGNWNNNNNNDFESSLLNGSFYPGDDFAVTMRKRCFVEGGKDFGKICIWESDGEKGDITCDIVDNVSVLNRIGSESVSDPKEIKQFRRNSGCFASEVKRPGETICKGHKNYDLMLNLNWHSVGKEASISRELIPSDFDLKEKFWTRFPSEGSKITPPHQSMEFRWKDYCPMVFRQLRKRFQVDPADYMLAICGNAALRELSSPGKSGSFFYLTQDDRFMIKTVKKSEVKVLLRMLRSYYEHVSQYEDSLVTKFYGVHCVKPIGGQKTRFIVMGNLFCSEYPIHRRFDLKGSSHGRMTDKTEDEIDETTTLKDLDLNFVFRLQRNWFKDLITLLVGVHFRDDNTCDKMGLSPFFLRTGKHDSYQSEKFMRGYRFLEAELQDRDRVKSGRKSLIRLGANMPARAERMARRSDFDQYTSLGMSHFTPCRIGETYDVVLYFGIIDILQDYDISKKLEHAYKSLQVDPSSISAVDPKLYSKRFRDFVGEYSARTVASSMKQRCKCCHES*