AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0480019956.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0480019956.01.T01 MTR_2g060420 98.201 278 5 0 50 327 270 547 0.0 570
MsG0480019956.01.T01 MTR_2g060420 97.015 134 4 0 50 183 270 403 1.24e-85 265
MsG0480019956.01.T01 MTR_2g060420 98.462 130 2 0 50 179 270 399 1.33e-85 263
MsG0480019956.01.T01 MTR_2g060420 98.925 93 1 0 50 142 270 362 6.11e-58 191
MsG0480019956.01.T01 MTR_7g090640 26.070 257 147 6 50 304 368 583 1.24e-16 81.3
MsG0480019956.01.T01 MTR_4g074870 25.926 216 126 6 50 260 321 507 4.87e-12 67.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0480019956.01.T01 AT3G47450 65.357 280 91 2 50 327 286 561 5.58e-130 382
MsG0480019956.01.T01 AT3G47450 64.643 280 93 2 50 327 286 561 1.50e-128 379
MsG0480019956.01.T01 AT4G10620 25.292 257 149 6 45 299 315 530 1.18e-15 78.2

Find 87 sgRNAs with CRISPR-Local

Find 367 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AACAAACCTTCTTCTCTTTC+TGG 0.093378 4:+30660232 None:intergenic
ATTCAAATTAATGCTTTCTT+TGG 0.211740 4:-30657161 MsG0480019956.01.T01:CDS
TAAAATGTTAAACATGTTTC+CGG 0.262455 4:+30656621 None:intergenic
GGAATTCAAAAGTACCATTT+TGG 0.269489 4:+30655237 None:intergenic
AAAGGTGCTTCGACAGTAAA+TGG 0.298977 4:-30656814 MsG0480019956.01.T01:CDS
TAGATATAACTTACTTAATA+AGG 0.304884 4:+30658980 None:intergenic
GCTGTTCCTGGAACTACCTT+AGG 0.306684 4:-30657188 MsG0480019956.01.T01:CDS
AGCACCTTTGTTTGTATTGT+CGG 0.326011 4:+30656828 None:intergenic
AAGAAAGCATTAATTTGAAT+TGG 0.326794 4:+30657164 None:intergenic
CCAGTACAGTCTGCTGTTCC+TGG 0.333865 4:-30657200 MsG0480019956.01.T01:CDS
AAATCATTGGTAGGAATAAC+TGG 0.335779 4:-30660270 MsG0480019956.01.T01:CDS
ATATGAATTGGCATCCTCTT+AGG 0.337943 4:+30656594 None:intergenic
CAAATTAATGCTTTCTTTGG+AGG 0.367521 4:-30657158 MsG0480019956.01.T01:CDS
CCATTACCAGTAGGCAAGGC+TGG 0.375446 4:-30655312 MsG0480019956.01.T01:CDS
GGGAAGAGATGTTTACATTC+TGG 0.376268 4:-30659630 MsG0480019956.01.T01:CDS
AACATTGGTTGTTGAGAACT+TGG 0.383313 4:+30655128 None:intergenic
ACTGAGGGGCCTATCTTTCC+CGG 0.397514 4:-30656953 MsG0480019956.01.T01:intron
TGTTAGAATTGATGTCTTGA+AGG 0.398535 4:-30656758 MsG0480019956.01.T01:intron
ATTGGCCCTAAGGTAGTTCC+AGG 0.402457 4:+30657182 None:intergenic
GAAAAGAGAAGGCTGAGAAC+TGG 0.412977 4:-30655996 MsG0480019956.01.T01:CDS
CCAGCCTTGCCTACTGGTAA+TGG 0.414914 4:+30655312 None:intergenic
TCTGTGGGCACCATATGAAT+TGG 0.416048 4:+30656582 None:intergenic
CTTTGTGCAGCTGCAGCCAC+TGG 0.422464 4:+30657230 None:intergenic
GTGGCATCAGTTTGTTCAAA+AGG 0.443579 4:-30655075 MsG0480019956.01.T01:three_prime_UTR
TCGACAGTAAATGGCTTGAA+TGG 0.443852 4:-30656805 MsG0480019956.01.T01:CDS
AGCAGGAAATGAGACCAAAA+TGG 0.452527 4:-30655251 MsG0480019956.01.T01:CDS
TCTTACGAGTTCAAAATCAT+TGG 0.454827 4:-30660283 MsG0480019956.01.T01:CDS
GCTTGCGATATTGCTATATC+AGG 0.456295 4:-30655465 MsG0480019956.01.T01:CDS
AAGAACATACCGGGAAAGAT+AGG 0.460823 4:+30656944 None:intergenic
TCTGCCCCAGCCTTGCCTAC+TGG 0.461104 4:+30655306 None:intergenic
AATTCATCTGCTTTCTCTGT+GGG 0.471683 4:+30656567 None:intergenic
CTGTTCCTGGAACTACCTTA+GGG 0.475173 4:-30657187 MsG0480019956.01.T01:CDS
TAAGAGGATGCCAATTCATA+TGG 0.485520 4:-30656592 MsG0480019956.01.T01:CDS
TTATTGTCACAGAAAGAACT+TGG 0.486062 4:-30656042 MsG0480019956.01.T01:intron
GAAGATTCATATGCTTAAGC+AGG 0.488182 4:-30659592 MsG0480019956.01.T01:intron
ATTAATGCTTTCTTTGGAGG+AGG 0.494082 4:-30657155 MsG0480019956.01.T01:CDS
CATTACCAGTAGGCAAGGCT+GGG 0.495878 4:-30655311 MsG0480019956.01.T01:CDS
CCAGGAACAGCAGACTGTAC+TGG 0.496203 4:+30657200 None:intergenic
ATTCTGGTAAGTCTCTGAAC+TGG 0.496972 4:-30659614 MsG0480019956.01.T01:CDS
AGAAATCCAGAAAGAGAAGA+AGG 0.499062 4:-30660238 MsG0480019956.01.T01:intron
AGCAAGGGAGGATAGATCTT+CGG 0.499291 4:+30656987 None:intergenic
CTGTGGTGGAGATGAACTCC+TGG 0.504637 4:+30657030 None:intergenic
GATATTGCTATATCAGGTCT+AGG 0.507163 4:-30655459 MsG0480019956.01.T01:CDS
ATTAATAATACATTTAACAT+TGG 0.507875 4:+30655113 None:intergenic
TGCTCCTAAAAGCCGACTGA+GGG 0.509262 4:-30656968 MsG0480019956.01.T01:CDS
TAATGCTTTCTTTGGAGGAG+GGG 0.513509 4:-30657153 MsG0480019956.01.T01:intron
ATTAATTTGAATTGGCCCTA+AGG 0.514252 4:+30657172 None:intergenic
AGGATGGCTTTCTGTTGAGC+CGG 0.515806 4:-30655439 MsG0480019956.01.T01:CDS
ACAAAATGCAATAGACACTA+CGG 0.525515 4:-30655391 MsG0480019956.01.T01:CDS
TAGGCAAGGCTGGGGCAGAA+TGG 0.535765 4:-30655302 MsG0480019956.01.T01:CDS
CATCAGTTTGTTCAAAAGGA+AGG 0.537376 4:-30655071 MsG0480019956.01.T01:three_prime_UTR
CAAAATGCAATAGACACTAC+GGG 0.543069 4:-30655390 MsG0480019956.01.T01:CDS
TTACAGGGTTCAGCTAATGT+TGG 0.543821 4:-30659023 MsG0480019956.01.T01:intron
GTTGTTGAGAACTTGGGTAG+AGG 0.548134 4:+30655135 None:intergenic
TTAATGCTTTCTTTGGAGGA+GGG 0.553702 4:-30657154 MsG0480019956.01.T01:CDS
AATCTGTGTGACCTACCAAC+CGG 0.555680 4:+30655420 None:intergenic
ACGAGTTCAAAATCATTGGT+AGG 0.558746 4:-30660279 MsG0480019956.01.T01:CDS
TTTCTGTTGAGCCGGTTGGT+AGG 0.558950 4:-30655431 MsG0480019956.01.T01:CDS
TGGCTTTCTGTTGAGCCGGT+TGG 0.564204 4:-30655435 MsG0480019956.01.T01:CDS
AACAGGTTTGGGGACATGTA+CGG 0.568281 4:+30655353 None:intergenic
AGAATTAACAGATAAAGAGC+AGG 0.576236 4:-30655268 MsG0480019956.01.T01:CDS
GCCTTGCCTACTGGTAATGG+TGG 0.579377 4:+30655315 None:intergenic
ATATTTGATACCAGAGACAA+TGG 0.580022 4:-30657264 MsG0480019956.01.T01:intron
TAAAATTTGAAGATACTGAA+AGG 0.581028 4:-30655942 MsG0480019956.01.T01:intron
CCCACCAAGTGGAAAAGAGA+AGG 0.589412 4:-30656007 MsG0480019956.01.T01:CDS
AAATTCATCTGCTTTCTCTG+TGG 0.589837 4:+30656566 None:intergenic
GCCACCATTACCAGTAGGCA+AGG 0.591193 4:-30655316 MsG0480019956.01.T01:CDS
CAACTGCAGTTTGCCTGTGG+TGG 0.591370 4:+30657016 None:intergenic
GATATAGCAATATCGCAAGC+TGG 0.591658 4:+30655468 None:intergenic
CAGGAGTTCATCTCCACCAC+AGG 0.599540 4:-30657029 MsG0480019956.01.T01:CDS
TTGCTATATCAGGTCTAGGA+TGG 0.601269 4:-30655455 MsG0480019956.01.T01:CDS
CAGAAACTGTATGACACTCC+AGG 0.601341 4:-30657048 MsG0480019956.01.T01:CDS
ACGAGGCCACCATTACCAGT+AGG 0.618637 4:-30655321 MsG0480019956.01.T01:CDS
TTGCTCCTAAAAGCCGACTG+AGG 0.619264 4:-30656969 MsG0480019956.01.T01:CDS
ACATTGGTTGTTGAGAACTT+GGG 0.620938 4:+30655129 None:intergenic
GGAAAGATAGGCCCCTCAGT+CGG 0.624772 4:+30656956 None:intergenic
CTTTCCGACAATACAAACAA+AGG 0.637415 4:-30656832 MsG0480019956.01.T01:CDS
GAGAAGGCTGAGAACTGGAG+AGG 0.643970 4:-30655991 MsG0480019956.01.T01:CDS
AGGGAGGATAGATCTTCGGA+AGG 0.666269 4:+30656991 None:intergenic
ATTACCAGTAGGCAAGGCTG+GGG 0.666863 4:-30655310 MsG0480019956.01.T01:CDS
GAACAACTGCAGTTTGCCTG+TGG 0.695137 4:+30657013 None:intergenic
AATGGCATATAATGATCCAG+TGG 0.696160 4:-30657246 MsG0480019956.01.T01:CDS
GCTCCTAAAAGCCGACTGAG+GGG 0.696766 4:-30656967 MsG0480019956.01.T01:CDS
TAATGTGACTAATACAACCG+TGG 0.704566 4:-30655094 MsG0480019956.01.T01:three_prime_UTR
GTTCTGCTAATCCCACCAAG+TGG 0.707656 4:-30656018 MsG0480019956.01.T01:CDS
AAAATGCAATAGACACTACG+GGG 0.732571 4:-30655389 MsG0480019956.01.T01:CDS
AAATGCAATAGACACTACGG+GGG 0.756248 4:-30655388 MsG0480019956.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATATATATATATATATATAT+GGG + Chr4:30657838-30657819 None:intergenic 0.0%
!! TATATATATATATATATATA+TGG + Chr4:30657839-30657820 None:intergenic 0.0%
!! AATAAAAGAATTATTCAATA+TGG + Chr4:30656307-30656326 None:intergenic 10.0%
!! AATGATACAATTTAATATAT+TGG + Chr4:30656049-30656068 None:intergenic 10.0%
!! ATTAATAATACATTTAACAT+TGG + Chr4:30660240-30660259 None:intergenic 10.0%
!! TAAGATTTGTATTATATAAA+TGG + Chr4:30656217-30656236 None:intergenic 10.0%
!! TATATATATATTGTTTCATT+TGG - Chr4:30657865-30657884 MsG0480019956.01.T01:intron 10.0%
!!! AATAATTCTTTTATTTTACA+GGG - Chr4:30656312-30656331 MsG0480019956.01.T01:intron 10.0%
!!! ATTATTTTAAAGAAATTTAG+GGG - Chr4:30659678-30659697 MsG0480019956.01.T01:intron 10.0%
!!! GAATTATTTTAAAGAAATTT+AGG - Chr4:30659676-30659695 MsG0480019956.01.T01:intron 10.0%
!!! TTAACATTTAATTTGTTATA+AGG - Chr4:30658954-30658973 MsG0480019956.01.T01:intron 10.0%
!! AAAAAAAAAAAAGAGTAAAC+AGG + Chr4:30658257-30658276 None:intergenic 15.0%
!! AAAAAAAAAACTGTTGAAAT+AGG - Chr4:30657950-30657969 MsG0480019956.01.T01:intron 15.0%
!! ATGCTAATTAAATAGTTATT+TGG + Chr4:30659199-30659218 None:intergenic 15.0%
!! TAGATATAACTTACTTAATA+AGG + Chr4:30656373-30656392 None:intergenic 15.0%
!! TGATTAATAACCATTATAAA+GGG - Chr4:30656732-30656751 MsG0480019956.01.T01:intron 15.0%
!! TTATCTACTAATCATAATAT+TGG + Chr4:30659829-30659848 None:intergenic 15.0%
!! TTCATTAATGAAATTATAGT+CGG - Chr4:30659586-30659605 MsG0480019956.01.T01:intron 15.0%
!! TTGATTAATAACCATTATAA+AGG - Chr4:30656731-30656750 MsG0480019956.01.T01:intron 15.0%
!!! CATTTTTGAAAAAAAAGTAA+AGG - Chr4:30659224-30659243 MsG0480019956.01.T01:intron 15.0%
!!! GAATAATTCTTTTATTTTAC+AGG - Chr4:30656311-30656330 MsG0480019956.01.T01:intron 15.0%
!!! GTTTTTTTGAATTTAAAACA+AGG + Chr4:30657148-30657167 None:intergenic 15.0%
!!! TTTTCCTTTTACTTATTTTT+GGG - Chr4:30660149-30660168 MsG0480019956.01.T01:intron 15.0%
!!! TTTTTCCTTTTACTTATTTT+TGG - Chr4:30660148-30660167 MsG0480019956.01.T01:intron 15.0%
!! AAAATAAATCGAATTTCAGT+AGG + Chr4:30655690-30655709 None:intergenic 20.0%
!! AAATCAGTTAAAAGGAAAAA+AGG + Chr4:30655160-30655179 None:intergenic 20.0%
!! AAGCATTAGATTAAATTACA+TGG + Chr4:30657514-30657533 None:intergenic 20.0%
!! AATAAAGGTAAGCATAATTT+AGG + Chr4:30657219-30657238 None:intergenic 20.0%
!! AATCAACACCTTTATAAATA+TGG + Chr4:30655290-30655309 None:intergenic 20.0%
!! ATAAGAAGTAAATCTAATCA+CGG - Chr4:30657488-30657507 MsG0480019956.01.T01:intron 20.0%
!! ATTCAAATTAATGCTTTCTT+TGG - Chr4:30658189-30658208 MsG0480019956.01.T01:intron 20.0%
!! CAGACAAGAAAAAATTATAT+TGG - Chr4:30659542-30659561 MsG0480019956.01.T01:intron 20.0%
!! TAAAATGTTAAACATGTTTC+CGG + Chr4:30658732-30658751 None:intergenic 20.0%
!! TAAAATTTGAAGATACTGAA+AGG - Chr4:30659408-30659427 MsG0480019956.01.T01:intron 20.0%
!! TCATGAGTAATTTAATCTAA+TGG + Chr4:30656942-30656961 None:intergenic 20.0%
!! TTAATCCAAATGTTTACAAA+AGG + Chr4:30656399-30656418 None:intergenic 20.0%
!!! AAACATGTTTAACATTTTAC+GGG - Chr4:30658733-30658752 MsG0480019956.01.T01:intron 20.0%
!!! AAGAAAGCATTAATTTGAAT+TGG + Chr4:30658189-30658208 None:intergenic 20.0%
!!! AAGTAGTGTTGATAATAATT+AGG - Chr4:30655328-30655347 MsG0480019956.01.T01:CDS 20.0%
!!! AATGGATTTTCAATATTTTG+GGG - Chr4:30658563-30658582 MsG0480019956.01.T01:intron 20.0%
!!! ACTTTTTTTATCCATAACAA+TGG + Chr4:30659005-30659024 None:intergenic 20.0%
!!! CAATTTGATGATTTAGAATT+CGG + Chr4:30657242-30657261 None:intergenic 20.0%
!!! CATAGAAAAAAATCTGTTTT+GGG - Chr4:30659517-30659536 MsG0480019956.01.T01:intron 20.0%
!!! CATTATTTTGAACATAATCA+TGG + Chr4:30657314-30657333 None:intergenic 20.0%
!!! CTGTATATAGTTTATCATTT+TGG - Chr4:30658018-30658037 MsG0480019956.01.T01:intron 20.0%
!!! GAAACATGTTTAACATTTTA+CGG - Chr4:30658732-30658751 MsG0480019956.01.T01:intron 20.0%
!!! GAATGGATTTTCAATATTTT+GGG - Chr4:30658562-30658581 MsG0480019956.01.T01:intron 20.0%
!!! GATTTATTTTCCTTTTTGTA+GGG - Chr4:30655700-30655719 MsG0480019956.01.T01:intron 20.0%
!!! TCATAGAAAAAAATCTGTTT+TGG - Chr4:30659516-30659535 MsG0480019956.01.T01:intron 20.0%
!!! TGAATGGATTTTCAATATTT+TGG - Chr4:30658561-30658580 MsG0480019956.01.T01:intron 20.0%
!!! TTTCCTTTTACTTATTTTTG+GGG - Chr4:30660150-30660169 MsG0480019956.01.T01:intron 20.0%
! AAAACTGTTGAAATAGGTAA+TGG - Chr4:30657956-30657975 MsG0480019956.01.T01:intron 25.0%
! AAGAACTGAAATCAGTTAAA+AGG + Chr4:30655168-30655187 None:intergenic 25.0%
! AAGGAAAAACAAAGAATACA+CGG + Chr4:30660137-30660156 None:intergenic 25.0%
! AATGGAAGCTTAAAATACAA+AGG + Chr4:30656199-30656218 None:intergenic 25.0%
! ACTGTCATCCATATTTATAA+AGG - Chr4:30655279-30655298 MsG0480019956.01.T01:CDS 25.0%
! AGAAAATACCATGATGATTT+AGG - Chr4:30655583-30655602 MsG0480019956.01.T01:intron 25.0%
! AGTAGAAGCTTAAAATACAA+AGG + Chr4:30656265-30656284 None:intergenic 25.0%
! ATAAATGACTTGAGAATTAG+GGG + Chr4:30659799-30659818 None:intergenic 25.0%
! ATCCATCCATAATTATTGAA+TGG - Chr4:30659085-30659104 MsG0480019956.01.T01:intron 25.0%
! ATTCAATAATTATGGATGGA+TGG + Chr4:30659086-30659105 None:intergenic 25.0%
! CAAATATTAAAAGGTCAAGA+TGG + Chr4:30658073-30658092 None:intergenic 25.0%
! CATAAATGACTTGAGAATTA+GGG + Chr4:30659800-30659819 None:intergenic 25.0%
! CTAATGGTTATTAATCAAAG+CGG + Chr4:30656926-30656945 None:intergenic 25.0%
! CTCTGGTATCAAATATTAAA+AGG + Chr4:30658082-30658101 None:intergenic 25.0%
! CTCTTACCATTCAATAATTA+TGG + Chr4:30659094-30659113 None:intergenic 25.0%
! GAAAATACCATGATGATTTA+GGG - Chr4:30655584-30655603 MsG0480019956.01.T01:intron 25.0%
! GAATATCCATCCATTAATAA+TGG - Chr4:30659616-30659635 MsG0480019956.01.T01:CDS 25.0%
! GAATTATTCAATATGGTTCT+TGG + Chr4:30656300-30656319 None:intergenic 25.0%
! GTAGAAGCTTAAAATACAAA+GGG + Chr4:30656264-30656283 None:intergenic 25.0%
! TAAAATGAAAGCTCTATCTA+GGG - Chr4:30659462-30659481 MsG0480019956.01.T01:intron 25.0%
! TAAATGAGATGAGATACAAA+AGG + Chr4:30656137-30656156 None:intergenic 25.0%
! TAATGGTTATTAATCAAAGC+GGG + Chr4:30656925-30656944 None:intergenic 25.0%
! TACCATTCAATAATTATGGA+TGG + Chr4:30659090-30659109 None:intergenic 25.0%
! TTCAATCCATCCATTATTAA+TGG + Chr4:30659629-30659648 None:intergenic 25.0%
! TTCTTAATAGAGACCTAATT+TGG + Chr4:30659440-30659459 None:intergenic 25.0%
!! AAATCATCAAGAGATTTTCT+GGG - Chr4:30655196-30655215 MsG0480019956.01.T01:three_prime_UTR 25.0%
!! ATTTCATGTTTTCCAATTCA+GGG - Chr4:30658978-30658997 MsG0480019956.01.T01:intron 25.0%
!! GGATTTTATCTTTAACGAAT+TGG - Chr4:30659650-30659669 MsG0480019956.01.T01:intron 25.0%
!! GTTTTCTACAATTGAAAAGT+TGG - Chr4:30656478-30656497 MsG0480019956.01.T01:intron 25.0%
!! TACATCCTTTTGTAAACATT+TGG - Chr4:30656391-30656410 MsG0480019956.01.T01:intron 25.0%
!! TATTTCATGTTTTCCAATTC+AGG - Chr4:30658977-30658996 MsG0480019956.01.T01:intron 25.0%
!! TGATTTAGAATTCGGAATAA+AGG + Chr4:30657234-30657253 None:intergenic 25.0%
!! TTTTACTTAGCATGTGAAAA+CGG - Chr4:30657361-30657380 MsG0480019956.01.T01:intron 25.0%
!!! ACATATTACCCATTTTTTAG+TGG - Chr4:30659053-30659072 MsG0480019956.01.T01:intron 25.0%
!!! CATATTACCCATTTTTTAGT+GGG - Chr4:30659054-30659073 MsG0480019956.01.T01:intron 25.0%
!!! CGATTTATTTTCCTTTTTGT+AGG - Chr4:30655699-30655718 MsG0480019956.01.T01:intron 25.0%
!!! TTAATAATGGATGGATTGAA+TGG - Chr4:30659629-30659648 MsG0480019956.01.T01:CDS 25.0%
!!! TTATCAGTCTTGATGATTTT+AGG - Chr4:30658701-30658720 MsG0480019956.01.T01:intron 25.0%
!!! TTCCTTTTACTTATTTTTGG+GGG - Chr4:30660151-30660170 MsG0480019956.01.T01:intron 25.0%
!!! TTTATCATTTTGGCAATTTC+AGG - Chr4:30658028-30658047 MsG0480019956.01.T01:intron 25.0%
AAATCATTGGTAGGAATAAC+TGG - Chr4:30655080-30655099 MsG0480019956.01.T01:three_prime_UTR 30.0%
AATATGGATTTGGATGGAAA+TGG + Chr4:30659737-30659756 None:intergenic 30.0%
AATGAACTTGTCAAATGTCA+AGG - Chr4:30655373-30655392 MsG0480019956.01.T01:CDS 30.0%
AATGCAAACAATGACTACAA+CGG + Chr4:30656510-30656529 None:intergenic 30.0%
ACAAAATGCAATAGACACTA+CGG - Chr4:30659959-30659978 MsG0480019956.01.T01:intron 30.0%
ACACCTTCATAAAAAGTAGT+TGG - Chr4:30657634-30657653 MsG0480019956.01.T01:intron 30.0%
ACAGATGAATCTTCCATAAA+TGG + Chr4:30656112-30656131 None:intergenic 30.0%
AGAAATTTAGGGGATTGTAA+TGG - Chr4:30659688-30659707 MsG0480019956.01.T01:intron 30.0%
AGAATTAACAGATAAAGAGC+AGG - Chr4:30660082-30660101 MsG0480019956.01.T01:intron 30.0%
AGTTTGTACTTTCATGTCAT+AGG - Chr4:30658636-30658655 MsG0480019956.01.T01:intron 30.0%
ATAAAAGACACCTTCACAAA+AGG - Chr4:30657778-30657797 MsG0480019956.01.T01:intron 30.0%
ATATTTGATACCAGAGACAA+TGG - Chr4:30658086-30658105 MsG0480019956.01.T01:intron 30.0%
ATCAAGACTGATAACTTCAA+GGG + Chr4:30658695-30658714 None:intergenic 30.0%
ATCCATCCATTATTAATGGA+TGG + Chr4:30659625-30659644 None:intergenic 30.0%
ATGAACTTGTCAAATGTCAA+GGG - Chr4:30655374-30655393 MsG0480019956.01.T01:CDS 30.0%
ATGGATGATTTAGATGGATA+TGG + Chr4:30659769-30659788 None:intergenic 30.0%
CAAATTAATGCTTTCTTTGG+AGG - Chr4:30658192-30658211 MsG0480019956.01.T01:intron 30.0%
CAATTGTAGAAAACGCATAA+AGG + Chr4:30656472-30656491 None:intergenic 30.0%
CGGATGAAATTGAAGAATTT+CGG - Chr4:30655914-30655933 MsG0480019956.01.T01:intron 30.0%
CTTCTAAACAGTGTTATCTA+TGG + Chr4:30655957-30655976 None:intergenic 30.0%
GATATGGATTTGGAAGAATA+TGG + Chr4:30659753-30659772 None:intergenic 30.0%
GATTTAGATGGATATGGATT+TGG + Chr4:30659763-30659782 None:intergenic 30.0%
GATTTGGAAGAATATGGATT+TGG + Chr4:30659747-30659766 None:intergenic 30.0%
GCATAAATGACTTGAGAATT+AGG + Chr4:30659801-30659820 None:intergenic 30.0%
GGATGAAATTGAAGAATTTC+GGG - Chr4:30655915-30655934 MsG0480019956.01.T01:intron 30.0%
GTAAAAATCTCAACAGGTTT+GGG + Chr4:30660011-30660030 None:intergenic 30.0%
GTAAAATGAAAGCTCTATCT+AGG - Chr4:30659461-30659480 MsG0480019956.01.T01:intron 30.0%
TAAAAATCTCAACAGGTTTG+GGG + Chr4:30660010-30660029 None:intergenic 30.0%
TAAGATGACAAACTTTCTGT+CGG - Chr4:30655254-30655273 MsG0480019956.01.T01:CDS 30.0%
TAGATAACACTGTTTAGAAG+AGG - Chr4:30655957-30655976 MsG0480019956.01.T01:CDS 30.0%
TCTTACGAGTTCAAAATCAT+TGG - Chr4:30655067-30655086 MsG0480019956.01.T01:three_prime_UTR 30.0%
TGTTAGAATTGATGTCTTGA+AGG - Chr4:30658592-30658611 MsG0480019956.01.T01:intron 30.0%
TTATTGTCACAGAAAGAACT+TGG - Chr4:30659308-30659327 MsG0480019956.01.T01:intron 30.0%
TTCTCTTAATTGACAAGTTG+TGG - Chr4:30656430-30656449 MsG0480019956.01.T01:intron 30.0%
TTTACTTAGCATGTGAAAAC+GGG - Chr4:30657362-30657381 MsG0480019956.01.T01:intron 30.0%
! ATCATGGATTTTTGCAATTG+TGG + Chr4:30657298-30657317 None:intergenic 30.0%
! ATCCATCCATTAATAATGGA+TGG - Chr4:30659620-30659639 MsG0480019956.01.T01:CDS 30.0%
! ATGATTTTGAACTCGTAAGA+TGG + Chr4:30655067-30655086 None:intergenic 30.0%
! ATTAATTTGAATTGGCCCTA+AGG + Chr4:30658181-30658200 None:intergenic 30.0%
! GAAAGCAGATGAATTTTATC+AGG - Chr4:30658791-30658810 MsG0480019956.01.T01:intron 30.0%
! GAAATCATCAAGAGATTTTC+TGG - Chr4:30655195-30655214 MsG0480019956.01.T01:three_prime_UTR 30.0%
! GAAGGTTTGTTTATCCTTTA+TGG - Chr4:30655130-30655149 MsG0480019956.01.T01:three_prime_UTR 30.0%
! TGAAAGGTATACTCCAAATT+AGG - Chr4:30659424-30659443 MsG0480019956.01.T01:intron 30.0%
! TTTCCAATACTTTTGACAAG+AGG + Chr4:30655472-30655491 None:intergenic 30.0%
! TTTCCTCTTGTCAAAAGTAT+TGG - Chr4:30655466-30655485 MsG0480019956.01.T01:CDS 30.0%
!! AGTTTTTGAAAGAACATACC+GGG + Chr4:30658418-30658437 None:intergenic 30.0%
!! ATGTTTTTACTACGTTGTTC+TGG - Chr4:30655999-30656018 MsG0480019956.01.T01:CDS 30.0%
!! CAGTTTTTGAAAGAACATAC+CGG + Chr4:30658419-30658438 None:intergenic 30.0%
!! GTGCTTTAATTTTGATGTGA+TGG - Chr4:30656566-30656585 MsG0480019956.01.T01:CDS 30.0%
!!! ACACCAACTACTTTTTATGA+AGG + Chr4:30657729-30657748 None:intergenic 30.0%
!!! AGGAAACTTTTTTGCATTTC+AGG - Chr4:30655348-30655367 MsG0480019956.01.T01:CDS 30.0%
!!! GGAATTCAAAAGTACCATTT+TGG + Chr4:30660116-30660135 None:intergenic 30.0%
!!! TCCTTTTACTTATTTTTGGG+GGG - Chr4:30660152-30660171 MsG0480019956.01.T01:intron 30.0%
AAAATGCAATAGACACTACG+GGG - Chr4:30659961-30659980 MsG0480019956.01.T01:intron 35.0%
AAAGTGAAAATCACACCTTG+AGG + Chr4:30657680-30657699 None:intergenic 35.0%
AAATTCATCTGCTTTCTCTG+TGG + Chr4:30658787-30658806 None:intergenic 35.0%
AACAAACCTTCTTCTCTTTC+TGG + Chr4:30655121-30655140 None:intergenic 35.0%
AACATCTCTTCCCTACAAAA+AGG + Chr4:30655713-30655732 None:intergenic 35.0%
AATGGCATATAATGATCCAG+TGG - Chr4:30658104-30658123 MsG0480019956.01.T01:intron 35.0%
AATTCATCTGCTTTCTCTGT+GGG + Chr4:30658786-30658805 None:intergenic 35.0%
ACGAGTTCAAAATCATTGGT+AGG - Chr4:30655071-30655090 MsG0480019956.01.T01:three_prime_UTR 35.0%
ACTGATAACTTCAAGGGAAA+TGG + Chr4:30658689-30658708 None:intergenic 35.0%
AGAAATCCAGAAAGAGAAGA+AGG - Chr4:30655112-30655131 MsG0480019956.01.T01:three_prime_UTR 35.0%
AGCACATAGTTTAGCATCAA+AGG + Chr4:30656551-30656570 None:intergenic 35.0%
ATATGAATTGGCATCCTCTT+AGG + Chr4:30658759-30658778 None:intergenic 35.0%
ATGCAGATGCAAAGACAATT+TGG + Chr4:30655533-30655552 None:intergenic 35.0%
ATTAATCAAAGCGGGAGATT+TGG + Chr4:30656917-30656936 None:intergenic 35.0%
CAAAATGCAATAGACACTAC+GGG - Chr4:30659960-30659979 MsG0480019956.01.T01:intron 35.0%
CAATAATTATGGATGGATGG+AGG + Chr4:30659083-30659102 None:intergenic 35.0%
CACCTTCATAAAAAGTAGTG+TGG - Chr4:30657635-30657654 MsG0480019956.01.T01:intron 35.0%
CACTTAGCTTCCCTTTATAA+TGG + Chr4:30656745-30656764 None:intergenic 35.0%
CAGAGACACAATAAGTTACT+TGG - Chr4:30658893-30658912 MsG0480019956.01.T01:intron 35.0%
CATCAAGACTGATAACTTCA+AGG + Chr4:30658696-30658715 None:intergenic 35.0%
CGCTCTATGTCAGATATATA+CGG + Chr4:30656628-30656647 None:intergenic 35.0%
CGTAAAAATCTCAACAGGTT+TGG + Chr4:30660012-30660031 None:intergenic 35.0%
CTAAACAGTGTTATCTATGG+CGG + Chr4:30655954-30655973 None:intergenic 35.0%
CTGATAACTTCAAGGGAAAT+GGG + Chr4:30658688-30658707 None:intergenic 35.0%
CTTCCATAAATGGTTTAGAC+TGG + Chr4:30656102-30656121 None:intergenic 35.0%
CTTTCCGACAATACAAACAA+AGG - Chr4:30658518-30658537 MsG0480019956.01.T01:intron 35.0%
GAAGATTCATATGCTTAAGC+AGG - Chr4:30655758-30655777 MsG0480019956.01.T01:intron 35.0%
GATATTGCTATATCAGGTCT+AGG - Chr4:30659891-30659910 MsG0480019956.01.T01:intron 35.0%
GATTCACAATACCAGCTTTA+AGG + Chr4:30658865-30658884 None:intergenic 35.0%
GGAAAAAAGGTGAACCATAA+AGG + Chr4:30655147-30655166 None:intergenic 35.0%
GGCAAAATGGATGATTTAGA+TGG + Chr4:30659775-30659794 None:intergenic 35.0%
TAAGAGGATGCCAATTCATA+TGG - Chr4:30658758-30658777 MsG0480019956.01.T01:intron 35.0%
TAAGCAAACTAGAGCCATTT+AGG + Chr4:30658937-30658956 None:intergenic 35.0%
TAATGTGACTAATACAACCG+TGG - Chr4:30660256-30660275 MsG0480019956.01.T01:CDS 35.0%
TACTTCCTCTCACTTGATAT+TGG - Chr4:30657566-30657585 MsG0480019956.01.T01:intron 35.0%
TATGACCAATATCAAGTGAG+AGG + Chr4:30657574-30657593 None:intergenic 35.0%
TCATTATATGCCATTGTCTC+TGG + Chr4:30658099-30658118 None:intergenic 35.0%
TCCCCCCAAAAATAAGTAAA+AGG + Chr4:30660156-30660175 None:intergenic 35.0%
TGGAAGAATATGGATTTGGA+TGG + Chr4:30659743-30659762 None:intergenic 35.0%
TTAACAGCAGTGTTGTCAAA+TGG - Chr4:30655787-30655806 MsG0480019956.01.T01:intron 35.0%
TTCCTACTGAGTATCTCAAA+AGG + Chr4:30655414-30655433 None:intergenic 35.0%
TTCTATTTGTACCACGTGTA+AGG - Chr4:30659250-30659269 MsG0480019956.01.T01:intron 35.0%
! AACATTGGTTGTTGAGAACT+TGG + Chr4:30660225-30660244 None:intergenic 35.0%
! AACCTGTTGAGATTTTTACG+AGG - Chr4:30660012-30660031 MsG0480019956.01.T01:intron 35.0%
! ACATTGGTTGTTGAGAACTT+GGG + Chr4:30660224-30660243 None:intergenic 35.0%
! ACTTTTACCCCTTTTATCCT+TGG - Chr4:30657271-30657290 MsG0480019956.01.T01:intron 35.0%
! AGAAGTTGCAGAAGGTTTTT+GGG + Chr4:30657125-30657144 None:intergenic 35.0%
! AGCACCTTTGTTTGTATTGT+CGG + Chr4:30658525-30658544 None:intergenic 35.0%
! ATAGAAGACACCTTTTGTGA+AGG + Chr4:30657791-30657810 None:intergenic 35.0%
! ATTAATGCTTTCTTTGGAGG+AGG - Chr4:30658195-30658214 MsG0480019956.01.T01:intron 35.0%
! CATCAGTTTGTTCAAAAGGA+AGG - Chr4:30660279-30660298 MsG0480019956.01.T01:CDS 35.0%
! CTTTTACCCCTTTTATCCTT+GGG - Chr4:30657272-30657291 MsG0480019956.01.T01:intron 35.0%
! GAGGTATCCCACTAAAAAAT+GGG + Chr4:30659064-30659083 None:intergenic 35.0%
! GTCTTATTGTGAGAAATGAG+AGG - Chr4:30656707-30656726 MsG0480019956.01.T01:intron 35.0%
! TTAATGCTTTCTTTGGAGGA+GGG - Chr4:30658196-30658215 MsG0480019956.01.T01:intron 35.0%
! TTTTATCAAGTCACACCTCA+AGG - Chr4:30657662-30657681 MsG0480019956.01.T01:intron 35.0%
! TTTTGAACAAACTGATGCCA+CGG + Chr4:30660276-30660295 None:intergenic 35.0%
!! AAGTGAGAGGAAGTATCTTA+TGG + Chr4:30657561-30657580 None:intergenic 35.0%
!! AGGGGATTGTAATGGATTAA+TGG - Chr4:30659696-30659715 MsG0480019956.01.T01:intron 35.0%
!! AGGTTTTGATCTTGTCGATA+TGG - Chr4:30655831-30655850 MsG0480019956.01.T01:intron 35.0%
!! ATACAGTTTCTGCATTGGTT+AGG + Chr4:30658294-30658313 None:intergenic 35.0%
!! GGATTTTCAATATTTTGGGG+AGG - Chr4:30658566-30658585 MsG0480019956.01.T01:intron 35.0%
!! TACAGTTTCTGCATTGGTTA+GGG + Chr4:30658293-30658312 None:intergenic 35.0%
!! TTGATGATTTTAGGCTCTAC+CGG - Chr4:30658710-30658729 MsG0480019956.01.T01:intron 35.0%
!!! CACCACACTACTTTTTATGA+AGG + Chr4:30657640-30657659 None:intergenic 35.0%
!!! TTTACTTATTTTTGGGGGGA+GGG - Chr4:30660156-30660175 MsG0480019956.01.T01:intron 35.0%
!!! TTTTACTTATTTTTGGGGGG+AGG - Chr4:30660155-30660174 MsG0480019956.01.T01:intron 35.0%
AAACAAGGAGAAGTTGCAGA+AGG + Chr4:30657133-30657152 None:intergenic 40.0%
AAATGCAATAGACACTACGG+GGG - Chr4:30659962-30659981 MsG0480019956.01.T01:intron 40.0%
AAGAACATACCGGGAAAGAT+AGG + Chr4:30658409-30658428 None:intergenic 40.0%
AATGACTTGAGAATTAGGGG+TGG + Chr4:30659796-30659815 None:intergenic 40.0%
AATTGGACGATTCATGGAGA+GGG - Chr4:30657408-30657427 MsG0480019956.01.T01:intron 40.0%
AATTGTGGCCCAAGGATAAA+AGG + Chr4:30657283-30657302 None:intergenic 40.0%
AGCAGGAAATGAGACCAAAA+TGG - Chr4:30660099-30660118 MsG0480019956.01.T01:intron 40.0%
AGCCTCTTGTCTAAAAAACC+GGG + Chr4:30656837-30656856 None:intergenic 40.0%
AGTTGTTGCATGTGACTGAA+AGG + Chr4:30656883-30656902 None:intergenic 40.0%
ATAAACAGAAGCCGTCATTC+AGG + Chr4:30659292-30659311 None:intergenic 40.0%
ATTCTGGTAAGTCTCTGAAC+TGG - Chr4:30655736-30655755 MsG0480019956.01.T01:intron 40.0%
ATTGTGGCCCAAGGATAAAA+GGG + Chr4:30657282-30657301 None:intergenic 40.0%
CAAGGAAATATCCTTACACG+TGG + Chr4:30659264-30659283 None:intergenic 40.0%
CAATTCAGGGTCCATTGTTA+TGG - Chr4:30658991-30659010 MsG0480019956.01.T01:intron 40.0%
CAGCCTCTTGTCTAAAAAAC+CGG + Chr4:30656838-30656857 None:intergenic 40.0%
CATAACAATGGACCCTGAAT+TGG + Chr4:30658993-30659012 None:intergenic 40.0%
CATGTGTTCTCTTTGTAGAC+AGG + Chr4:30657460-30657479 None:intergenic 40.0%
CGTACAATACACCAATTGGT+GGG + Chr4:30656806-30656825 None:intergenic 40.0%
CTTCAATTTCATCCGCCTTA+TGG + Chr4:30655909-30655928 None:intergenic 40.0%
CTTGTCTAAAAAACCGGGTA+AGG + Chr4:30656832-30656851 None:intergenic 40.0%
GAACATCATTGCACGAGATA+GGG + Chr4:30657015-30657034 None:intergenic 40.0%
GATATAGCAATATCGCAAGC+TGG + Chr4:30659885-30659904 None:intergenic 40.0%
GATCTTGTCGATATGGCAAA+TGG - Chr4:30655838-30655857 MsG0480019956.01.T01:intron 40.0%
GCATCGTACAATACACCAAT+TGG + Chr4:30656810-30656829 None:intergenic 40.0%
GCTTGCGATATTGCTATATC+AGG - Chr4:30659885-30659904 MsG0480019956.01.T01:intron 40.0%
GGGAAGAGATGTTTACATTC+TGG - Chr4:30655720-30655739 MsG0480019956.01.T01:intron 40.0%
GTGCCAGTCTAAACCATTTA+TGG - Chr4:30656096-30656115 MsG0480019956.01.T01:intron 40.0%
GTGTCATACAGTTTCTGCAT+TGG + Chr4:30658299-30658318 None:intergenic 40.0%
TCCTTAGCCCTAAATCATCA+TGG + Chr4:30655594-30655613 None:intergenic 40.0%
TCCTTGAGAAACCTGAATGA+CGG - Chr4:30659278-30659297 MsG0480019956.01.T01:intron 40.0%
TCGACAGTAAATGGCTTGAA+TGG - Chr4:30658545-30658564 MsG0480019956.01.T01:intron 40.0%
TCGTACAATACACCAATTGG+TGG + Chr4:30656807-30656826 None:intergenic 40.0%
TTACAGGGTTCAGCTAATGT+TGG - Chr4:30656327-30656346 MsG0480019956.01.T01:intron 40.0%
TTGCTATATCAGGTCTAGGA+TGG - Chr4:30659895-30659914 MsG0480019956.01.T01:intron 40.0%
! AACAATGAAGCTTTGTGTGC+AGG + Chr4:30657050-30657069 None:intergenic 40.0%
! ACCATGATGATTTAGGGCTA+AGG - Chr4:30655590-30655609 MsG0480019956.01.T01:intron 40.0%
! ATTTTTGCAATTGTGGCCCA+AGG + Chr4:30657291-30657310 None:intergenic 40.0%
! GAGAAGTTGCAGAAGGTTTT+TGG + Chr4:30657126-30657145 None:intergenic 40.0%
! GTGGCATCAGTTTGTTCAAA+AGG - Chr4:30660275-30660294 MsG0480019956.01.T01:CDS 40.0%
! TAACATTTTACGGGCCTAAG+AGG - Chr4:30658742-30658761 MsG0480019956.01.T01:intron 40.0%
! TAATGCTTTCTTTGGAGGAG+GGG - Chr4:30658197-30658216 MsG0480019956.01.T01:intron 40.0%
! TAGACTGGCACTTTTACTGT+AGG + Chr4:30656087-30656106 None:intergenic 40.0%
! TTGCTTAAAGCTGGCCTAAA+TGG - Chr4:30658920-30658939 MsG0480019956.01.T01:intron 40.0%
!! AAAGGTGCTTCGACAGTAAA+TGG - Chr4:30658536-30658555 MsG0480019956.01.T01:intron 40.0%
!! GGAGGTATCCCACTAAAAAA+TGG + Chr4:30659065-30659084 None:intergenic 40.0%
!!! AGCCTTTTGAGATACTCAGT+AGG - Chr4:30655409-30655428 MsG0480019956.01.T01:CDS 40.0%
!!! CTGTTGCTTTCTTTTTGTGC+AGG - Chr4:30659859-30659878 MsG0480019956.01.T01:intron 40.0%
!!! CTTGCTGTTTTCCTTAAAGC+TGG - Chr4:30658851-30658870 MsG0480019956.01.T01:intron 40.0%
!!! CTTGGTGTTTTGCTTAAAGC+TGG - Chr4:30658911-30658930 MsG0480019956.01.T01:intron 40.0%
!!! TACCCGGTTTTTTAGACAAG+AGG - Chr4:30656832-30656851 MsG0480019956.01.T01:CDS 40.0%
AACAGGTTTGGGGACATGTA+CGG + Chr4:30660000-30660019 None:intergenic 45.0%
AACGGGAGCAATCTGAAAAC+AGG - Chr4:30657379-30657398 MsG0480019956.01.T01:intron 45.0%
AATCTGTGTGACCTACCAAC+CGG + Chr4:30659933-30659952 None:intergenic 45.0%
ACAGCAGTGTTGTCAAATGG+CGG - Chr4:30655790-30655809 MsG0480019956.01.T01:intron 45.0%
AGCAAGGGAGGATAGATCTT+CGG + Chr4:30658366-30658385 None:intergenic 45.0%
ATTGGACGATTCATGGAGAG+GGG - Chr4:30657409-30657428 MsG0480019956.01.T01:intron 45.0%
CAGAAACTGTATGACACTCC+AGG - Chr4:30658302-30658321 MsG0480019956.01.T01:intron 45.0%
CCTTATGGCACTATTATGGC+GGG + Chr4:30655894-30655913 None:intergenic 45.0%
CTGAAAACAGGTGGCAGAAT+TGG - Chr4:30657391-30657410 MsG0480019956.01.T01:intron 45.0%
CTGTTCCTGGAACTACCTTA+GGG - Chr4:30658163-30658182 MsG0480019956.01.T01:intron 45.0%
CTTATGGCACTATTATGGCG+GGG + Chr4:30655893-30655912 None:intergenic 45.0%
CTTGTCGATATGGCAAATGG+CGG - Chr4:30655841-30655860 MsG0480019956.01.T01:intron 45.0%
CTTTGCATCTGCATTCTGCA+CGG - Chr4:30655539-30655558 MsG0480019956.01.T01:intron 45.0%
CTTTGTGTGCAGGATAGAAG+AGG + Chr4:30657040-30657059 None:intergenic 45.0%
GAAAAGAGAAGGCTGAGAAC+TGG - Chr4:30659354-30659373 MsG0480019956.01.T01:intron 45.0%
GAATTGGACGATTCATGGAG+AGG - Chr4:30657407-30657426 MsG0480019956.01.T01:intron 45.0%
GACAAGATCAAAACCTGCCA+TGG + Chr4:30655827-30655846 None:intergenic 45.0%
GACACTCCACTCACTTGATA+TGG + Chr4:30656690-30656709 None:intergenic 45.0%
GAGAATTAGGGGTGGCAAAA+TGG + Chr4:30659788-30659807 None:intergenic 45.0%
GCCATAATAGTGCCATAAGG+CGG - Chr4:30655894-30655913 MsG0480019956.01.T01:intron 45.0%
GCCTTATGGCACTATTATGG+CGG + Chr4:30655895-30655914 None:intergenic 45.0%
GGAACATCATTGCACGAGAT+AGG + Chr4:30657016-30657035 None:intergenic 45.0%
GGCCTCGTAAAAATCTCAAC+AGG + Chr4:30660017-30660036 None:intergenic 45.0%
GTATTGTACGATGCCTTACC+CGG - Chr4:30656816-30656835 MsG0480019956.01.T01:CDS 45.0%
GTGTTATCTATGGCGGTTTG+TGG + Chr4:30655947-30655966 None:intergenic 45.0%
GTGTTGTCAAATGGCGGTTA+TGG - Chr4:30655796-30655815 MsG0480019956.01.T01:intron 45.0%
GTTGTTGAGAACTTGGGTAG+AGG + Chr4:30660218-30660237 None:intergenic 45.0%
TCCGCCTTATGGCACTATTA+TGG + Chr4:30655898-30655917 None:intergenic 45.0%
TCTGTGGGCACCATATGAAT+TGG + Chr4:30658771-30658790 None:intergenic 45.0%
TGCATGTGACTGAAAGGTCA+CGG + Chr4:30656877-30656896 None:intergenic 45.0%
TGGCAGAATTGGACGATTCA+TGG - Chr4:30657402-30657421 MsG0480019956.01.T01:intron 45.0%
TTGTGGCCCAAGGATAAAAG+GGG + Chr4:30657281-30657300 None:intergenic 45.0%
TTTGCATCTGCATTCTGCAC+GGG - Chr4:30655540-30655559 MsG0480019956.01.T01:intron 45.0%
! ACTATTATGGCGGGGTATGA+CGG + Chr4:30655885-30655904 None:intergenic 45.0%
! CCTTCTCTTTTCCACTTGGT+GGG + Chr4:30659346-30659365 None:intergenic 45.0%
! TCAGCCTTCTCTTTTCCACT+TGG + Chr4:30659350-30659369 None:intergenic 45.0%
! TTAGACAAGAGGCTGTTTCC+AGG - Chr4:30656843-30656862 MsG0480019956.01.T01:CDS 45.0%
!! AGTTGCAGAAGGTTTTTGGG+AGG + Chr4:30657122-30657141 None:intergenic 45.0%
!! GTTGCAGAAGGTTTTTGGGA+GGG + Chr4:30657121-30657140 None:intergenic 45.0%
!! ATATATATACATATATATAT+GGG - Chr4:30657599-30657618 MsG0480019956.01.T01:intron 5.0%
!! TATATATATACATATATATA+TGG - Chr4:30657598-30657617 MsG0480019956.01.T01:intron 5.0%
!!! AATTATTTTAAAGAAATTTA+GGG - Chr4:30659677-30659696 MsG0480019956.01.T01:intron 5.0%
AGGATGGCTTTCTGTTGAGC+CGG - Chr4:30659911-30659930 MsG0480019956.01.T01:intron 50.0%
AGGGAGGATAGATCTTCGGA+AGG + Chr4:30658362-30658381 None:intergenic 50.0%
ATAGGGCAGAACTGCAAGGA+AGG + Chr4:30656998-30657017 None:intergenic 50.0%
ATGGCAAATGGCGGCTGATA+GGG - Chr4:30655850-30655869 MsG0480019956.01.T01:intron 50.0%
ATTACCAGTAGGCAAGGCTG+GGG - Chr4:30660040-30660059 MsG0480019956.01.T01:intron 50.0%
ATTGGCCCTAAGGTAGTTCC+AGG + Chr4:30658171-30658190 None:intergenic 50.0%
CATGGAGAGGGGAGAACAAT+AGG - Chr4:30657420-30657439 MsG0480019956.01.T01:intron 50.0%
CATTACCAGTAGGCAAGGCT+GGG - Chr4:30660039-30660058 MsG0480019956.01.T01:intron 50.0%
CCCACCAAGTGGAAAAGAGA+AGG - Chr4:30659343-30659362 MsG0480019956.01.T01:intron 50.0%
CCCGCCATAATAGTGCCATA+AGG - Chr4:30655891-30655910 MsG0480019956.01.T01:intron 50.0%
GAACAACTGCAGTTTGCCTG+TGG + Chr4:30658340-30658359 None:intergenic 50.0%
GCATGTGACTGAAAGGTCAC+GGG + Chr4:30656876-30656895 None:intergenic 50.0%
GCTGTTCCTGGAACTACCTT+AGG - Chr4:30658162-30658181 MsG0480019956.01.T01:intron 50.0%
GGGAGCAATCTGAAAACAGG+TGG - Chr4:30657382-30657401 MsG0480019956.01.T01:intron 50.0%
GTTCTGCTAATCCCACCAAG+TGG - Chr4:30659332-30659351 MsG0480019956.01.T01:intron 50.0%
TAGGGCAGAACTGCAAGGAA+GGG + Chr4:30656997-30657016 None:intergenic 50.0%
TATGGCAAATGGCGGCTGAT+AGG - Chr4:30655849-30655868 MsG0480019956.01.T01:intron 50.0%
TCAGCGCCATATCAAGTGAG+TGG - Chr4:30656681-30656700 MsG0480019956.01.T01:intron 50.0%
TGCTCCTAAAAGCCGACTGA+GGG - Chr4:30658382-30658401 MsG0480019956.01.T01:intron 50.0%
TGTGTGCAGGATAGAAGAGG+TGG + Chr4:30657037-30657056 None:intergenic 50.0%
TTGCTCCTAAAAGCCGACTG+AGG - Chr4:30658381-30658400 MsG0480019956.01.T01:intron 50.0%
TTTCTGTTGAGCCGGTTGGT+AGG - Chr4:30659919-30659938 MsG0480019956.01.T01:intron 50.0%
! GCCGTCATTCAGGTTTCTCA+AGG + Chr4:30659282-30659301 None:intergenic 50.0%
! GCCTTCTCTTTTCCACTTGG+TGG + Chr4:30659347-30659366 None:intergenic 50.0%
!! ATTTTTGGGGGGAGGGTACA+TGG - Chr4:30660163-30660182 MsG0480019956.01.T01:intron 50.0%
!! CAGTCGGCTTTTAGGAGCAA+GGG + Chr4:30658381-30658400 None:intergenic 50.0%
!! TCAGTCGGCTTTTAGGAGCA+AGG + Chr4:30658382-30658401 None:intergenic 50.0%
AAGGTCACGGGTTCATGTCC+TGG + Chr4:30656864-30656883 None:intergenic 55.0%
ACGAGGCCACCATTACCAGT+AGG - Chr4:30660029-30660048 MsG0480019956.01.T01:intron 55.0%
ACTAAAGCTCCCGCATACGC+AGG - Chr4:30656766-30656785 MsG0480019956.01.T01:CDS 55.0%
ACTGAGGGGCCTATCTTTCC+CGG - Chr4:30658397-30658416 MsG0480019956.01.T01:intron 55.0%
CAACTGCAGTTTGCCTGTGG+TGG + Chr4:30658337-30658356 None:intergenic 55.0%
CAATTGGTGGGACCCCTTAC+CGG + Chr4:30656794-30656813 None:intergenic 55.0%
CAGGAGTTCATCTCCACCAC+AGG - Chr4:30658321-30658340 MsG0480019956.01.T01:intron 55.0%
CCAGCCTTGCCTACTGGTAA+TGG + Chr4:30660041-30660060 None:intergenic 55.0%
CCAGGAACAGCAGACTGTAC+TGG + Chr4:30658153-30658172 None:intergenic 55.0%
CCAGTACAGTCTGCTGTTCC+TGG - Chr4:30658150-30658169 MsG0480019956.01.T01:intron 55.0%
CCATTACCAGTAGGCAAGGC+TGG - Chr4:30660038-30660057 MsG0480019956.01.T01:intron 55.0%
CGAGATAGGGCAGAACTGCA+AGG + Chr4:30657002-30657021 None:intergenic 55.0%
CTAAAGCTCCCGCATACGCA+GGG - Chr4:30656767-30656786 MsG0480019956.01.T01:CDS 55.0%
GAGAAGGCTGAGAACTGGAG+AGG - Chr4:30659359-30659378 MsG0480019956.01.T01:intron 55.0%
GCCACCATTACCAGTAGGCA+AGG - Chr4:30660034-30660053 MsG0480019956.01.T01:intron 55.0%
GCTCCTAAAAGCCGACTGAG+GGG - Chr4:30658383-30658402 MsG0480019956.01.T01:intron 55.0%
GGAAAGATAGGCCCCTCAGT+CGG + Chr4:30658397-30658416 None:intergenic 55.0%
TCTATGGCGGTTTGTGGCAG+AGG + Chr4:30655941-30655960 None:intergenic 55.0%
TGGCTTTCTGTTGAGCCGGT+TGG - Chr4:30659915-30659934 MsG0480019956.01.T01:intron 55.0%
! CTGTGGTGGAGATGAACTCC+TGG + Chr4:30658323-30658342 None:intergenic 55.0%
!! GCCTTGCCTACTGGTAATGG+TGG + Chr4:30660038-30660057 None:intergenic 55.0%
!! TCGGCTTTTAGGAGCAAGGG+AGG + Chr4:30658378-30658397 None:intergenic 55.0%
CAAATGGCGGCTGATAGGGC+GGG - Chr4:30655854-30655873 MsG0480019956.01.T01:intron 60.0%
CATACGCAGGGTCCGGTAAG+GGG - Chr4:30656779-30656798 MsG0480019956.01.T01:CDS 60.0%
CGGTAAGGGGTCCCACCAAT+TGG - Chr4:30656792-30656811 MsG0480019956.01.T01:CDS 60.0%
CTTACCGGACCCTGCGTATG+CGG + Chr4:30656779-30656798 None:intergenic 60.0%
CTTTGTGCAGCTGCAGCCAC+TGG + Chr4:30658123-30658142 None:intergenic 60.0%
GCAAATGGCGGCTGATAGGG+CGG - Chr4:30655853-30655872 MsG0480019956.01.T01:intron 60.0%
GCATACGCAGGGTCCGGTAA+GGG - Chr4:30656778-30656797 MsG0480019956.01.T01:CDS 60.0%
GGTTATGGCAGAGCCATGGC+AGG - Chr4:30655811-30655830 MsG0480019956.01.T01:intron 60.0%
TAGGCAAGGCTGGGGCAGAA+TGG - Chr4:30660048-30660067 MsG0480019956.01.T01:intron 60.0%
TGGCGGTTATGGCAGAGCCA+TGG - Chr4:30655807-30655826 MsG0480019956.01.T01:intron 60.0%
TTACCGGACCCTGCGTATGC+GGG + Chr4:30656778-30656797 None:intergenic 60.0%
!! AGGCCCCTCAGTCGGCTTTT+AGG + Chr4:30658389-30658408 None:intergenic 60.0%
CGCATACGCAGGGTCCGGTA+AGG - Chr4:30656777-30656796 MsG0480019956.01.T01:CDS 65.0%
TCTGCCCCAGCCTTGCCTAC+TGG + Chr4:30660047-30660066 None:intergenic 65.0%
GCTCCCGCATACGCAGGGTC+CGG - Chr4:30656772-30656791 MsG0480019956.01.T01:CDS 70.0%
Chromosome Type Strat End Strand Name
Chr4 gene 30655046 30660326 30655046 ID=MsG0480019956.01;Name=MsG0480019956.01
Chr4 mRNA 30655046 30660326 30655046 ID=MsG0480019956.01.T01;Parent=MsG0480019956.01;Name=MsG0480019956.01.T01;_AED=0.44;_eAED=0.46;_QI=0|0.87|0.77|1|0.62|0.66|9|196|327
Chr4 exon 30655046 30655491 30655046 ID=MsG0480019956.01.T01:exon:10017;Parent=MsG0480019956.01.T01
Chr4 exon 30655943 30656052 30655943 ID=MsG0480019956.01.T01:exon:10016;Parent=MsG0480019956.01.T01
Chr4 exon 30656560 30656649 30656560 ID=MsG0480019956.01.T01:exon:10015;Parent=MsG0480019956.01.T01
Chr4 exon 30656759 30656866 30656759 ID=MsG0480019956.01.T01:exon:10014;Parent=MsG0480019956.01.T01
Chr4 exon 30656954 30657067 30656954 ID=MsG0480019956.01.T01:exon:10013;Parent=MsG0480019956.01.T01
Chr4 exon 30657154 30657272 30657154 ID=MsG0480019956.01.T01:exon:10012;Parent=MsG0480019956.01.T01
Chr4 exon 30658994 30659039 30658994 ID=MsG0480019956.01.T01:exon:10011;Parent=MsG0480019956.01.T01
Chr4 exon 30659593 30659651 30659593 ID=MsG0480019956.01.T01:exon:10010;Parent=MsG0480019956.01.T01
Chr4 exon 30660239 30660326 30660239 ID=MsG0480019956.01.T01:exon:10009;Parent=MsG0480019956.01.T01
Chr4 CDS 30660239 30660326 30660239 ID=MsG0480019956.01.T01:cds;Parent=MsG0480019956.01.T01
Chr4 CDS 30659593 30659651 30659593 ID=MsG0480019956.01.T01:cds;Parent=MsG0480019956.01.T01
Chr4 CDS 30658994 30659039 30658994 ID=MsG0480019956.01.T01:cds;Parent=MsG0480019956.01.T01
Chr4 CDS 30657154 30657272 30657154 ID=MsG0480019956.01.T01:cds;Parent=MsG0480019956.01.T01
Chr4 CDS 30656954 30657067 30656954 ID=MsG0480019956.01.T01:cds;Parent=MsG0480019956.01.T01
Chr4 CDS 30656759 30656866 30656759 ID=MsG0480019956.01.T01:cds;Parent=MsG0480019956.01.T01
Chr4 CDS 30656560 30656649 30656560 ID=MsG0480019956.01.T01:cds;Parent=MsG0480019956.01.T01
Chr4 CDS 30655943 30656052 30655943 ID=MsG0480019956.01.T01:cds;Parent=MsG0480019956.01.T01
Chr4 CDS 30655242 30655491 30655242 ID=MsG0480019956.01.T01:cds;Parent=MsG0480019956.01.T01
Chr4 three_prime_UTR 30655046 30655241 30655046 ID=MsG0480019956.01.T01:three_prime_utr;Parent=MsG0480019956.01.T01
Gene Sequence

>MsG0480019956.01.T01

TTGCAGTGTTCTCAGTGTCCATCTTACGAGTTCAAAATCATTGGTAGGAATAACTGGAGTGATATCAGAAATCCAGAAAGAGAAGAAGGGAAGAGATGTTTACATTCTGGTAAGTCTCTGAACTGGAAGATTCATATGCTTAAGCAGGGTTCAGCTAATGTTGGTAAATCTGCTTTCATTAACGCCTTATTAAAGACAATGGCATATAATGATCCAGTGGCTGCAGCTGCACAAAGATACAAACCAGTACAGTCTGCTGTTCCTGGAACTACCTTAGGGCCAATTCAAATTAATGCTTTCTTTGGAGGAGGGAAACTGTATGACACTCCAGGAGTTCATCTCCACCACAGGCAAACTGCAGTTGTTCCTTCCGAAGATCTATCCTCCCTTGCTCCTAAAAGCCGACTGAGGGGCCTATCTTTCCCGAGTTCACAAGTACTTTCCGACAATACAAACAAAGGTGCTTCGACAGTAAATGGCTTGAATGGATTTTCAATATTTTGGGGAGGTCTTGTTAGAATTGATGTCTTGAAGGCTCTACCGGAAACATGTTTAACATTTTACGGGCCTAAGAGGATGCCAATTCATATGGTGCCCACAGAGAAAGCAGATGAATTTTATCAGAAAGAACTTGGAGTTCTGCTAATCCCACCAAGTGGAAAAGAGAAGGCTGAGAACTGGAGAGGACTTGACTCAGAACGTAAATTGCAAATAAAATTTGAAGATACTGAAAGGCCAGCTTGCGATATTGCTATATCAGGTCTAGGATGGCTTTCTGTTGAGCCGGTTGGTAGGTCACACAGATTCTCACAACAAAATGCAATAGACACTACGGGGGAATTGCTTTTAGCCGTACATGTCCCCAAACCTGTTGAGATTTTTACGAGGCCACCATTACCAGTAGGCAAGGCTGGGGCAGAATGGTACGAGTATGCAGAATTAACAGATAAAGAGCAGGAAATGAGACCAAAATGGTACTTTTGA

Protein sequence

>MsG0480019956.01.T01

LQCSQCPSYEFKIIGRNNWSDIRNPEREEGKRCLHSGKSLNWKIHMLKQGSANVGKSAFINALLKTMAYNDPVAAAAQRYKPVQSAVPGTTLGPIQINAFFGGGKLYDTPGVHLHHRQTAVVPSEDLSSLAPKSRLRGLSFPSSQVLSDNTNKGASTVNGLNGFSIFWGGLVRIDVLKALPETCLTFYGPKRMPIHMVPTEKADEFYQKELGVLLIPPSGKEKAENWRGLDSERKLQIKFEDTERPACDIAISGLGWLSVEPVGRSHRFSQQNAIDTTGELLLAVHVPKPVEIFTRPPLPVGKAGAEWYEYAELTDKEQEMRPKWYF*