AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0480022805.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0480022805.01.T01 MTR_4g094662 67.155 478 40 6 1 362 98 574 0.0 544
MsG0480022805.01.T01 MTR_4g094662 94.118 51 3 0 359 409 644 694 7.39e-22 98.6
MsG0480022805.01.T01 MTR_2g438140 60.164 487 76 7 1 370 155 640 3.90e-172 497
MsG0480022805.01.T01 MTR_2g438140 56.907 485 89 9 1 367 95 577 4.48e-156 457
MsG0480022805.01.T01 MTR_2g438140 74.510 51 13 0 359 409 640 690 7.65e-15 77.0
MsG0480022805.01.T01 MTR_7g010800 49.476 477 121 10 1 361 79 551 1.47e-135 404
MsG0480022805.01.T01 MTR_3g115110 45.246 305 110 5 3 259 128 423 1.15e-68 230
MsG0480022805.01.T01 MTR_3g115110 50.562 89 41 1 273 358 506 594 3.07e-20 93.6
MsG0480022805.01.T01 MTR_0376s0020 34.743 331 109 6 132 358 1 328 4.06e-49 175
MsG0480022805.01.T01 MTR_3g462930 32.675 456 151 15 56 374 233 669 1.20e-46 171
MsG0480022805.01.T01 MTR_1g044600 35.714 350 127 11 92 356 133 469 2.24e-46 167
MsG0480022805.01.T01 MTR_7g096060 31.910 398 137 10 85 358 196 583 4.39e-45 166
MsG0480022805.01.T01 MTR_6g059690 30.958 407 153 11 119 406 184 581 2.12e-43 161
MsG0480022805.01.T01 MTR_4g064350 49.432 176 41 2 132 259 320 495 4.58e-43 161
MsG0480022805.01.T01 MTR_4g064350 35.821 134 75 6 231 356 531 661 5.47e-11 65.1
MsG0480022805.01.T01 MTR_7g078570 32.216 388 128 10 91 356 159 533 2.26e-42 157
MsG0480022805.01.T01 MTR_3g104490 31.953 338 126 6 117 357 193 523 4.47e-41 154
MsG0480022805.01.T01 MTR_8g469460 33.636 330 123 8 117 357 193 515 5.99e-41 154
MsG0480022805.01.T01 MTR_5g069780 46.231 199 54 3 114 259 290 488 2.50e-40 153
MsG0480022805.01.T01 MTR_8g099605 30.137 365 124 9 115 348 146 510 9.85e-34 133
MsG0480022805.01.T01 MTR_1g028390 42.529 174 49 2 133 259 330 499 1.04e-32 130
MsG0480022805.01.T01 MTR_1g028390 50.562 89 44 0 273 361 582 670 1.11e-18 89.0
MsG0480022805.01.T01 MTR_6g016600 34.646 254 102 4 54 260 253 489 4.84e-32 128
MsG0480022805.01.T01 MTR_8g099605 38.000 200 69 4 115 259 387 586 2.58e-30 124
MsG0480022805.01.T01 MTR_3g104470 35.268 224 88 4 130 304 222 437 2.86e-30 123
MsG0480022805.01.T01 MTR_3g104470 45.238 84 46 0 273 356 478 561 3.17e-15 78.2
MsG0480022805.01.T01 MTR_3g104480 39.891 183 54 4 126 259 218 393 3.81e-30 123
MsG0480022805.01.T01 MTR_3g104480 45.238 84 46 0 273 356 476 559 3.79e-15 77.8
MsG0480022805.01.T01 MTR_2g101290 38.889 180 63 1 126 258 409 588 2.21e-29 120
MsG0480022805.01.T01 MTR_2g101290 38.889 180 63 1 126 258 409 588 2.51e-29 120
MsG0480022805.01.T01 MTR_5g075340 37.186 199 71 3 110 259 207 400 4.18e-29 120
MsG0480022805.01.T01 MTR_5g075340 43.678 87 48 1 273 358 483 569 4.02e-15 77.8
MsG0480022805.01.T01 MTR_3g096000 41.146 192 63 4 117 258 280 471 2.17e-26 112
MsG0480022805.01.T01 MTR_5g075360 32.035 231 88 5 79 260 204 414 2.12e-24 105
MsG0480022805.01.T01 MTR_5g075360 37.647 85 52 1 273 356 496 580 1.14e-12 70.1
MsG0480022805.01.T01 MTR_5g075360 32.035 231 88 5 79 260 28 238 2.17e-24 105
MsG0480022805.01.T01 MTR_5g075360 37.647 85 52 1 273 356 320 404 1.03e-12 70.1
MsG0480022805.01.T01 MTR_4g094270 35.028 177 66 3 133 260 157 333 2.22e-24 104
MsG0480022805.01.T01 MTR_5g075360 35.000 180 63 3 130 260 14 188 2.49e-24 105
MsG0480022805.01.T01 MTR_5g075360 37.647 85 52 1 273 356 270 354 8.07e-13 70.1
MsG0480022805.01.T01 MTR_5g075360 35.000 180 63 3 130 260 190 364 2.65e-24 105
MsG0480022805.01.T01 MTR_5g075360 37.647 85 52 1 273 356 446 530 1.03e-12 70.1
MsG0480022805.01.T01 MTR_2g095210 35.000 160 88 3 113 260 427 582 1.58e-23 103
MsG0480022805.01.T01 MTR_3g115110 38.728 173 96 4 3 174 128 291 2.34e-23 102
MsG0480022805.01.T01 MTR_3g115110 48.750 80 38 1 282 358 308 387 7.68e-16 79.7
MsG0480022805.01.T01 MTR_3g062510 37.654 162 87 4 128 279 205 362 2.52e-23 101
MsG0480022805.01.T01 MTR_3g062510 42.537 134 71 3 128 259 205 334 3.09e-23 100
MsG0480022805.01.T01 MTR_7g101870 35.000 160 88 3 113 260 500 655 7.24e-23 101
MsG0480022805.01.T01 MTR_7g101870 32.768 177 68 3 132 260 206 379 3.07e-18 87.4
MsG0480022805.01.T01 MTR_1g063380 35.000 160 88 3 113 260 499 654 3.40e-22 99.8
MsG0480022805.01.T01 MTR_1g063380 33.898 177 66 4 132 260 205 378 2.50e-18 87.8
MsG0480022805.01.T01 MTR_5g074850 34.921 189 65 4 130 263 496 681 1.34e-21 97.8
MsG0480022805.01.T01 MTR_8g023550 33.333 180 87 2 113 259 146 325 1.64e-21 95.9
MsG0480022805.01.T01 MTR_1g083330 29.381 194 89 2 113 258 148 341 2.61e-21 95.5
MsG0480022805.01.T01 MTR_4g033235 29.381 194 89 2 113 258 149 342 3.03e-21 95.5
MsG0480022805.01.T01 MTR_1g069105 33.714 175 68 3 133 259 189 363 1.03e-19 90.5
MsG0480022805.01.T01 MTR_3g117230 30.899 178 75 2 131 260 138 315 1.46e-19 90.1
MsG0480022805.01.T01 MTR_1g069105 33.714 175 68 3 133 259 189 363 1.95e-19 90.1
MsG0480022805.01.T01 MTR_7g099640 33.714 175 68 3 133 259 188 362 2.29e-19 90.1
MsG0480022805.01.T01 MTR_7g099640 33.714 175 68 3 133 259 188 362 2.34e-19 89.7
MsG0480022805.01.T01 MTR_3g112260 30.337 178 76 2 131 260 135 312 3.00e-19 89.4
MsG0480022805.01.T01 MTR_2g007010 33.333 183 69 5 124 258 522 699 7.64e-18 86.3
MsG0480022805.01.T01 MTR_2g007010 44.898 98 41 3 172 262 325 416 3.90e-13 71.6
MsG0480022805.01.T01 MTR_7g088850 32.386 176 71 4 132 259 282 457 2.35e-17 84.3
MsG0480022805.01.T01 MTR_1g080430 29.714 175 75 1 132 258 677 851 3.20e-17 84.3
MsG0480022805.01.T01 MTR_1g080430 29.714 175 75 1 132 258 677 851 3.32e-17 84.7
MsG0480022805.01.T01 MTR_2g095320 29.545 176 72 4 128 255 419 590 7.03e-17 83.2
MsG0480022805.01.T01 MTR_2g095320 31.250 176 68 4 132 260 153 322 2.54e-16 81.6
MsG0480022805.01.T01 MTR_7g088830 35.849 159 85 4 113 259 679 832 1.56e-16 82.4
MsG0480022805.01.T01 MTR_7g088830 42.169 83 45 1 176 258 483 562 1.23e-13 73.6
MsG0480022805.01.T01 MTR_1g095660 29.851 201 87 4 113 259 99 299 2.82e-16 80.5
MsG0480022805.01.T01 MTR_7g089040 40.000 135 74 3 128 260 731 860 5.21e-16 80.9
MsG0480022805.01.T01 MTR_7g089040 44.578 83 43 1 176 258 476 555 2.22e-13 72.4
MsG0480022805.01.T01 MTR_3g023890 38.235 136 69 4 128 258 431 556 6.04e-16 80.5
MsG0480022805.01.T01 MTR_3g023890 42.424 99 41 4 172 260 178 270 1.25e-12 70.1
MsG0480022805.01.T01 MTR_7g088980 30.682 176 74 2 132 259 136 311 5.12e-15 76.6
MsG0480022805.01.T01 MTR_7g088980 30.682 176 74 2 132 259 312 487 6.18e-15 77.0
MsG0480022805.01.T01 MTR_7g089290 34.965 143 83 5 128 266 712 848 6.20e-15 77.4
MsG0480022805.01.T01 MTR_7g089290 34.965 143 83 5 128 266 684 820 6.70e-15 77.4
MsG0480022805.01.T01 MTR_7g088980 30.682 176 74 2 132 259 286 461 6.93e-15 77.0
MsG0480022805.01.T01 MTR_7g088980 30.682 176 74 2 132 259 218 393 7.07e-15 76.6
MsG0480022805.01.T01 MTR_4g088885 44.048 84 43 2 183 266 331 410 4.96e-14 74.3
MsG0480022805.01.T01 MTR_7g088980 36.090 133 80 2 132 259 312 444 6.56e-14 73.9
MsG0480022805.01.T01 MTR_7g088980 36.090 133 80 2 132 259 286 418 9.99e-14 73.2
MsG0480022805.01.T01 MTR_8g056860 37.126 167 71 8 114 259 495 648 1.74e-13 72.8
MsG0480022805.01.T01 MTR_3g023900 34.586 133 78 3 128 258 577 702 7.73e-13 70.9
MsG0480022805.01.T01 MTR_3g023900 40.594 101 44 3 172 262 323 417 2.56e-12 69.3
MsG0480022805.01.T01 MTR_4g067100 28.421 190 72 4 126 258 374 556 1.32e-11 67.0
MsG0480022805.01.T01 MTR_4g067100 28.421 190 72 4 126 258 374 556 1.33e-11 67.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0480022805.01.T01 AT2G30950 61.795 479 64 8 1 361 92 569 4.65e-180 518
MsG0480022805.01.T01 AT2G30950 80.488 41 8 0 359 399 638 678 1.45e-12 69.7
MsG0480022805.01.T01 AT2G30950 61.795 479 64 8 1 361 92 569 4.65e-180 518
MsG0480022805.01.T01 AT2G30950 80.488 41 8 0 359 399 638 678 1.45e-12 69.7
MsG0480022805.01.T01 AT2G30950 61.795 479 64 8 1 361 92 569 4.65e-180 518
MsG0480022805.01.T01 AT2G30950 80.488 41 8 0 359 399 638 678 1.45e-12 69.7
MsG0480022805.01.T01 AT2G30950 61.795 479 64 8 1 361 96 573 5.88e-180 518
MsG0480022805.01.T01 AT2G30950 80.488 41 8 0 359 399 642 682 1.44e-12 70.1
MsG0480022805.01.T01 AT1G06430 60.888 473 67 7 1 356 85 556 2.06e-174 503
MsG0480022805.01.T01 AT1G06430 80.488 41 8 0 359 399 631 671 4.65e-13 71.2
MsG0480022805.01.T01 AT1G06430 60.888 473 67 7 1 356 85 556 2.06e-174 503
MsG0480022805.01.T01 AT1G06430 80.488 41 8 0 359 399 631 671 4.65e-13 71.2
MsG0480022805.01.T01 AT1G06430 60.888 473 67 7 1 356 85 556 2.06e-174 503
MsG0480022805.01.T01 AT1G06430 80.488 41 8 0 359 399 631 671 4.65e-13 71.2
MsG0480022805.01.T01 AT5G15250 50.731 479 112 8 1 361 94 566 3.69e-145 429
MsG0480022805.01.T01 AT5G15250 55.769 312 75 5 1 263 94 391 4.55e-106 323
MsG0480022805.01.T01 AT5G42270 47.213 305 104 6 3 259 126 421 1.22e-71 238
MsG0480022805.01.T01 AT5G42270 50.562 89 41 1 273 358 504 592 3.61e-20 93.2
MsG0480022805.01.T01 AT1G50250 49.346 306 98 6 3 259 136 433 1.17e-68 230
MsG0480022805.01.T01 AT1G50250 50.562 89 41 1 273 358 516 604 4.38e-20 93.2
MsG0480022805.01.T01 AT1G07510 32.849 344 110 8 132 356 324 665 2.35e-42 159
MsG0480022805.01.T01 AT3G47060 44.231 208 55 4 113 259 290 497 1.93e-40 153
MsG0480022805.01.T01 AT3G47060 40.187 107 56 5 274 374 583 687 4.79e-11 65.1
MsG0480022805.01.T01 AT2G29080 33.043 345 107 7 132 356 319 659 8.59e-39 149
MsG0480022805.01.T01 AT5G58870 47.727 176 44 2 132 259 326 501 1.90e-38 147
MsG0480022805.01.T01 AT5G58870 30.000 210 117 9 183 374 494 691 5.48e-11 65.1
MsG0480022805.01.T01 AT3G02450 32.514 366 141 10 54 362 267 583 8.67e-37 142
MsG0480022805.01.T01 AT4G23940 30.055 366 123 9 115 348 410 774 1.20e-33 134
MsG0480022805.01.T01 AT5G53170 42.077 183 54 3 125 259 351 529 1.76e-33 133
MsG0480022805.01.T01 AT5G53170 48.235 85 44 0 273 357 612 696 6.68e-18 86.7
MsG0480022805.01.T01 AT2G26140 36.652 221 77 4 91 259 186 395 3.68e-30 123
MsG0480022805.01.T01 AT2G26140 50.000 90 44 1 273 361 478 567 7.54e-18 86.3
MsG0480022805.01.T01 AT3G16290 36.816 201 70 2 115 258 380 580 4.83e-30 123
MsG0480022805.01.T01 AT5G64580 40.104 192 65 4 117 258 297 488 2.98e-26 112
MsG0480022805.01.T01 AT5G19990 35.028 177 66 3 133 260 101 277 2.12e-24 103
MsG0480022805.01.T01 AT5G20000 35.028 177 66 3 133 260 159 335 3.39e-24 103
MsG0480022805.01.T01 AT5G19990 35.028 177 66 3 133 260 159 335 3.59e-24 103
MsG0480022805.01.T01 AT5G19990 35.028 177 66 3 133 260 159 335 3.59e-24 103
MsG0480022805.01.T01 AT5G58290 37.654 162 87 4 128 279 198 355 1.34e-23 102
MsG0480022805.01.T01 AT5G03340 36.250 160 86 3 113 260 498 653 1.34e-23 103
MsG0480022805.01.T01 AT5G03340 33.898 177 66 4 132 260 204 377 2.37e-18 87.8
MsG0480022805.01.T01 AT3G53230 35.000 160 88 3 113 260 499 654 2.73e-23 102
MsG0480022805.01.T01 AT3G53230 32.768 177 68 3 132 260 205 378 3.20e-18 87.4
MsG0480022805.01.T01 AT3G05530 29.897 194 88 2 113 258 149 342 1.02e-21 97.1
MsG0480022805.01.T01 AT1G09100 28.866 194 90 2 113 258 148 341 1.07e-20 94.0
MsG0480022805.01.T01 AT1G53750 31.795 195 85 3 113 259 146 340 5.92e-20 91.7
MsG0480022805.01.T01 AT3G56690 42.222 135 71 3 128 260 767 896 5.93e-20 92.8
MsG0480022805.01.T01 AT3G56690 40.964 83 46 1 176 258 473 552 1.63e-12 70.1
MsG0480022805.01.T01 AT3G09840 37.267 161 84 4 113 260 498 654 7.04e-20 92.4
MsG0480022805.01.T01 AT3G09840 33.898 177 66 4 132 260 204 377 2.05e-18 88.2
MsG0480022805.01.T01 AT5G43010 30.899 178 75 2 131 260 135 312 1.40e-19 90.5
MsG0480022805.01.T01 AT1G45000 31.073 177 74 2 132 260 136 312 2.33e-19 89.7
MsG0480022805.01.T01 AT4G29040 40.000 135 75 3 127 259 230 360 2.86e-19 89.7
MsG0480022805.01.T01 AT2G20140 40.000 135 75 3 127 259 230 360 3.60e-19 89.4
MsG0480022805.01.T01 AT1G53780 31.282 195 86 3 113 259 339 533 9.42e-19 89.0
MsG0480022805.01.T01 AT1G53780 31.282 195 86 3 113 259 317 511 9.62e-19 89.0
MsG0480022805.01.T01 AT1G53780 31.282 195 86 3 113 259 318 512 1.00e-18 89.0
MsG0480022805.01.T01 AT1G53780 31.282 195 86 3 113 259 318 512 1.00e-18 89.0
MsG0480022805.01.T01 AT5G08470 49.425 87 41 1 172 258 929 1012 4.33e-17 84.3
MsG0480022805.01.T01 AT5G08470 49.425 87 41 1 172 258 920 1003 4.48e-17 84.3
MsG0480022805.01.T01 AT3G04340 27.624 181 83 1 129 261 778 958 2.05e-16 82.0
MsG0480022805.01.T01 AT1G03000 34.266 143 84 5 128 266 700 836 2.29e-14 75.9
MsG0480022805.01.T01 AT2G03670 30.508 177 74 3 132 259 283 459 3.29e-14 74.7
MsG0480022805.01.T01 AT1G05910 29.947 187 67 4 129 258 375 554 6.67e-14 74.3
MsG0480022805.01.T01 AT4G04910 43.590 78 43 1 183 260 321 397 1.48e-13 73.2
MsG0480022805.01.T01 AT3G01610 29.016 193 83 5 115 259 510 696 1.12e-12 70.5
MsG0480022805.01.T01 AT3G01610 42.718 103 38 4 172 260 318 413 2.92e-12 68.9
MsG0480022805.01.T01 AT3G01610 29.016 193 83 5 115 259 510 696 1.30e-12 70.1
MsG0480022805.01.T01 AT3G01610 42.718 103 38 4 172 260 318 413 3.06e-12 68.9

Find 119 sgRNAs with CRISPR-Local

Find 215 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTCGAGGTTTCTTGAGTATT+TGG 0.193224 4:-76892918 MsG0480022805.01.T01:CDS
GCAAGAATTGTTGGAGGATT+AGG 0.268443 4:-76891351 MsG0480022805.01.T01:CDS
CTGAAATTCCAGTTGAAAAT+CGG 0.283840 4:-76890559 MsG0480022805.01.T01:CDS
TGCAACCTATTTCCCAATTC+AGG 0.285706 4:+76892827 None:intergenic
TGAGGCTGTGTCTCCTGAAT+TGG 0.304859 4:-76892840 MsG0480022805.01.T01:CDS
AAGAGCTTCTTCAGAAATTC+AGG 0.309999 4:-76892772 MsG0480022805.01.T01:CDS
TAAGATTGTGGAAGTCCTTC+TGG 0.311011 4:-76890633 MsG0480022805.01.T01:CDS
GCTTTCCCTGCTGCTGTCAT+TGG 0.314297 4:-76892671 MsG0480022805.01.T01:CDS
TGTCTCCTGAATTGGGAAAT+AGG 0.315118 4:-76892832 MsG0480022805.01.T01:CDS
CAACTCTTTGCAAGAATTGT+TGG 0.316556 4:-76891360 MsG0480022805.01.T01:CDS
CGTGTTCGAGTTCAACTTCC+TGG 0.320835 4:-76892803 MsG0480022805.01.T01:CDS
TTGTTGTTGCTGCAACTAAC+AGG 0.324289 4:-76892106 MsG0480022805.01.T01:CDS
CTCGAGGCGGTCCGGTGGAA+TGG 0.358005 4:-76892633 MsG0480022805.01.T01:CDS
CCAAAAGGAGTTCTTCTTGT+TGG 0.368691 4:-76892425 MsG0480022805.01.T01:intron
TCGAGGCGGTCCGGTGGAAT+GGG 0.369632 4:-76892632 MsG0480022805.01.T01:CDS
TACATACAGGCCATTCAAAC+AGG 0.371825 4:+76890509 None:intergenic
CCAACAAGAAGAACTCCTTT+TGG 0.377297 4:+76892425 None:intergenic
TCTATTGATAGGATTGTTGC+TGG 0.387609 4:-76891745 MsG0480022805.01.T01:intron
AGACAAAGAGGGACAGGAAT+TGG 0.397460 4:-76892209 MsG0480022805.01.T01:CDS
TCAAAAGTCACTCCAGTGTT+TGG 0.403653 4:+76892545 None:intergenic
TCATAATGCTCAAGAAGATT+CGG 0.406140 4:-76892726 MsG0480022805.01.T01:CDS
TGAAATTCCAGTTGAAAATC+GGG 0.410824 4:-76890558 MsG0480022805.01.T01:CDS
ATTCAAACAGGGACTGCTAC+TGG 0.418905 4:+76890521 None:intergenic
GTTTGGTTCCATTTGAAACT+TGG 0.424898 4:+76892562 None:intergenic
GTTTCTTGAGTATTTGGATA+AGG 0.428076 4:-76892912 MsG0480022805.01.T01:CDS
ATGGGAGGTCCCGGTGGACC+TGG 0.430906 4:-76892614 MsG0480022805.01.T01:CDS
GCTAATTTCTTACCCACAAA+TGG 0.431722 4:+76891655 None:intergenic
TTCTGTCAAAAGTTGGTTGA+GGG 0.432083 4:+76892160 None:intergenic
CGTCCATTTCTGTCAAAAGT+TGG 0.434164 4:+76892153 None:intergenic
CCTGGATTTCCTATGCAATT+CGG 0.441651 4:-76892596 MsG0480022805.01.T01:CDS
TTCCTTCTCTCGAGGCGGTC+CGG 0.442619 4:-76892641 MsG0480022805.01.T01:CDS
ATTCTCATATAGATCAACTT+TGG 0.444406 4:+76892880 None:intergenic
TCCGGTGGAATGGGAGGTCC+CGG 0.451748 4:-76892623 MsG0480022805.01.T01:CDS
GACAGAAATGGACGGATTTG+AGG 0.452499 4:-76892144 MsG0480022805.01.T01:CDS
CATAATGCTCAAGAAGATTC+GGG 0.453447 4:-76892725 MsG0480022805.01.T01:CDS
GAGGCTGTGTCTCCTGAATT+GGG 0.454840 4:-76892839 MsG0480022805.01.T01:CDS
ATCTAAAGCCAAGTTTCAAA+TGG 0.460715 4:-76892570 MsG0480022805.01.T01:CDS
TTCATACCTGTCTATCGAAT+CGG 0.467588 4:+76892048 None:intergenic
TTGTTGGAGGATTAGGTGGT+AGG 0.468049 4:-76891344 MsG0480022805.01.T01:CDS
GGGACTGCTACTGGAGTTGA+AGG 0.470521 4:+76890530 None:intergenic
CCTCCAGAATGTCGTATTCG+AGG 0.470895 4:-76892934 None:intergenic
CTCTTTGCAAGAATTGTTGG+AGG 0.472097 4:-76891357 MsG0480022805.01.T01:CDS
CCTGAGAGGTTCACTTCTGT+TGG 0.472869 4:-76892458 MsG0480022805.01.T01:CDS
GGTGAGCCTGAGGTTACAAC+TGG 0.473700 4:-76891300 MsG0480022805.01.T01:CDS
GGTTGCAGAACTTTGACTCC+TGG 0.477393 4:-76891483 MsG0480022805.01.T01:intron
ACAGAAATGGACGGATTTGA+GGG 0.478098 4:-76892143 MsG0480022805.01.T01:CDS
TGATAGGATTGTTGCTGGAA+TGG 0.483816 4:-76891740 MsG0480022805.01.T01:intron
TGGTCATGATGCGGTACAAA+AGG 0.488639 4:-76891463 MsG0480022805.01.T01:CDS
CCAACAGAAGTGAACCTCTC+AGG 0.499924 4:+76892458 None:intergenic
TGAATTTCTGAAGAAGCTCT+TGG 0.500518 4:+76892774 None:intergenic
AATACACCAATGACAGCAGC+AGG 0.500849 4:+76892665 None:intergenic
AGTTCCTCGAGGTCAAGCTC+GGG 0.500879 4:-76891433 MsG0480022805.01.T01:CDS
CACCTCCATAAAATCCTGCT+TGG 0.506645 4:+76892499 None:intergenic
AAAGTTGATCTATATGAGAA+TGG 0.514012 4:-76892878 MsG0480022805.01.T01:CDS
TGTTGGAGGATTAGGTGGTA+GGG 0.515767 4:-76891343 MsG0480022805.01.T01:CDS
GTTGGTGCTCGCATTCCAAA+AGG 0.518433 4:-76892440 MsG0480022805.01.T01:CDS
TAGTTCCTCGAGGTCAAGCT+CGG 0.519211 4:-76891434 MsG0480022805.01.T01:CDS
ACCAGGCCGATTCGATAGAC+AGG 0.519780 4:-76892054 MsG0480022805.01.T01:intron
GTTGATGAAATTGACGCTGT+TGG 0.520478 4:-76892233 MsG0480022805.01.T01:CDS
GTCAAGCTCGGGGTCTTACA+TGG 0.521459 4:-76891422 MsG0480022805.01.T01:CDS
GACTCTGCGTTATTGAGACC+AGG 0.523124 4:-76892071 MsG0480022805.01.T01:CDS
ATGGGAAGAGCAAAGTTTAG+TGG 0.526131 4:-76891699 MsG0480022805.01.T01:CDS
CCGAATTGCATAGGAAATCC+AGG 0.528602 4:+76892596 None:intergenic
TGGGGTGGATGAAGCCAAGC+AGG 0.530470 4:-76892513 MsG0480022805.01.T01:CDS
AGAGCTTCTTCAGAAATTCA+GGG 0.534293 4:-76892771 MsG0480022805.01.T01:CDS
CACCGGACCGCCTCGAGAGA+AGG 0.534803 4:+76892639 None:intergenic
AGAGGGACAGGAATTGGTGG+AGG 0.538307 4:-76892203 MsG0480022805.01.T01:CDS
TTAGTGGCATATCATGAAGT+TGG 0.538933 4:-76891683 MsG0480022805.01.T01:CDS
CATAGGAAATCCAGGTCCAC+CGG 0.540380 4:+76892604 None:intergenic
GTTGGAAGACAAAGAGGGAC+AGG 0.541174 4:-76892215 MsG0480022805.01.T01:CDS
GAAGGAACATTAATGACCGA+TGG 0.543574 4:-76891718 MsG0480022805.01.T01:CDS
TTTCTGTCAAAAGTTGGTTG+AGG 0.544666 4:+76892159 None:intergenic
ACCTGTCTATCGAATCGGCC+TGG 0.545246 4:+76892053 None:intergenic
GACGGATTTGAGGGTAATAC+CGG 0.545337 4:-76892134 MsG0480022805.01.T01:CDS
AGGCGGTCCGGTGGAATGGG+AGG 0.546632 4:-76892629 MsG0480022805.01.T01:CDS
TTAGATTGACCGAATTGCAT+AGG 0.547275 4:+76892587 None:intergenic
TGTGGAAGTCCTTCTGGAGA+AGG 0.550581 4:-76890627 MsG0480022805.01.T01:CDS
GAAGTTGGTCATGCCATTTG+TGG 0.552290 4:-76891668 MsG0480022805.01.T01:CDS
CAAAGAGGGACAGGAATTGG+TGG 0.553090 4:-76892206 MsG0480022805.01.T01:CDS
ACCGGGACCTCCCATTCCAC+CGG 0.558678 4:+76892622 None:intergenic
CTTCTCTCGAGGCGGTCCGG+TGG 0.561799 4:-76892638 MsG0480022805.01.T01:CDS
TTTCAAATGGAACCAAACAC+TGG 0.563173 4:-76892557 MsG0480022805.01.T01:CDS
TGAGATCAGAGTTGGGTCAT+CGG 0.563203 4:+76891389 None:intergenic
AAGTTGGTCATGCCATTTGT+GGG 0.566271 4:-76891667 MsG0480022805.01.T01:intron
TCATCAACAAAGACAATGCA+AGG 0.570490 4:+76892248 None:intergenic
AGAAGCTCTTGGCTAAGTCC+AGG 0.571364 4:+76892785 None:intergenic
ATCAGAGTTGGGTCATCGGA+AGG 0.574711 4:+76891393 None:intergenic
CACAGCCTCAACAATAGCTA+TGG 0.575621 4:+76892853 None:intergenic
CTAAACTTTGCTCTTCCCAT+CGG 0.576696 4:+76891702 None:intergenic
CCTGAGGTTACAACTGGTGC+AGG 0.577792 4:-76891294 MsG0480022805.01.T01:CDS
GTGTATTGTTCCTTCTCTCG+AGG 0.578733 4:-76892649 MsG0480022805.01.T01:CDS
AGGATTGTTGCTGGAATGGA+AGG 0.581374 4:-76891736 MsG0480022805.01.T01:CDS
GACGCTGTTGGAAGACAAAG+AGG 0.585021 4:-76892221 MsG0480022805.01.T01:CDS
AGAATTGTTGGAGGATTAGG+TGG 0.589670 4:-76891348 MsG0480022805.01.T01:CDS
CCTGCACCAGTTGTAACCTC+AGG 0.590727 4:+76891294 None:intergenic
TGTTGTTGCTGCAACTAACA+GGG 0.592269 4:-76892105 MsG0480022805.01.T01:CDS
TGAGGCAATTGATAAGATTG+TGG 0.597243 4:-76890645 MsG0480022805.01.T01:CDS
GGTGGAATGGGAGGTCCCGG+TGG 0.599843 4:-76892620 MsG0480022805.01.T01:CDS
ATAGGAAATCCAGGTCCACC+GGG 0.605635 4:+76892605 None:intergenic
CTGGAGAAGGAGACATTGAG+TGG 0.609730 4:-76890614 MsG0480022805.01.T01:CDS
GAGGGACAGGAATTGGTGGA+GGG 0.622613 4:-76892202 MsG0480022805.01.T01:CDS
TCAATGTCTCCTTCTCCAGA+AGG 0.626501 4:+76890618 None:intergenic
AAGGAACATTAATGACCGAT+GGG 0.627659 4:-76891717 MsG0480022805.01.T01:CDS
TAACGCAGAGTCAAGAATGT+CGG 0.631624 4:+76892082 None:intergenic
AATTTCTCAAGAAGCCTGAG+AGG 0.635500 4:-76892472 MsG0480022805.01.T01:CDS
CACAGATAAGGAACAACGTG+AGG 0.647598 4:-76890663 MsG0480022805.01.T01:intron
TATTGTTCCTTCTCTCGAGG+CGG 0.648203 4:-76892646 MsG0480022805.01.T01:CDS
GAGGTTACAACTGGTGCAGG+TGG 0.653393 4:-76891291 MsG0480022805.01.T01:intron
ACTGCTACTGGAGTTGAAGG+AGG 0.656492 4:+76890533 None:intergenic
AGACCCCGAGCTTGACCTCG+AGG 0.661905 4:+76891429 None:intergenic
GTTCCTCGAGGTCAAGCTCG+GGG 0.664861 4:-76891432 MsG0480022805.01.T01:CDS
TGGAACCATAGCTATTGTTG+AGG 0.667930 4:-76892858 MsG0480022805.01.T01:CDS
TGCAGCAACAACAATGACAC+CGG 0.667957 4:+76892115 None:intergenic
ACATACAGGCCATTCAAACA+GGG 0.675696 4:+76890510 None:intergenic
TTTGACTCCTGGTCATGATG+CGG 0.676383 4:-76891472 MsG0480022805.01.T01:CDS
ACGCTGTTGGAAGACAAAGA+GGG 0.714582 4:-76892220 MsG0480022805.01.T01:CDS
TAAACTCTGACAGTAGAGCG+CGG 0.727648 4:+76890582 None:intergenic
ATACACCAATGACAGCAGCA+GGG 0.728875 4:+76892666 None:intergenic
AAGGTGACATTAGTTCCTCG+AGG 0.734920 4:-76891444 MsG0480022805.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAATAAAAGGAAGAAAAAAT+AGG + Chr4:76892254-76892273 None:intergenic 15.0%
!! AATCAAAAGATATTATTGTA+AGG + Chr4:76892548-76892567 None:intergenic 15.0%
!! GTATGAATATGATTATATTA+CGG - Chr4:76891417-76891436 MsG0480022805.01.T01:CDS 15.0%
!! TAATCATTCATAAACATATA+AGG + Chr4:76891447-76891466 None:intergenic 15.0%
!! TTCCTAAAAAAAATAGTTAA+AGG + Chr4:76892394-76892413 None:intergenic 15.0%
!! AAGATATTATTGTAAGGAAT+AGG + Chr4:76892542-76892561 None:intergenic 20.0%
!! TAGATACAACTACAATTAAT+TGG - Chr4:76892328-76892347 MsG0480022805.01.T01:intron 20.0%
!!! TGCCTTTAACTATTTTTTTT+AGG - Chr4:76892389-76892408 MsG0480022805.01.T01:intron 20.0%
!!! TTTTCATGCTACAAAATAAA+AGG + Chr4:76892267-76892286 None:intergenic 20.0%
! AAAAAATAGGAGATATGATG+CGG + Chr4:76892241-76892260 None:intergenic 25.0%
! AGGAAACCAAATATAGTATA+AGG - Chr4:76892445-76892464 MsG0480022805.01.T01:CDS 25.0%
! ATTCTCATATAGATCAACTT+TGG + Chr4:76890572-76890591 None:intergenic 25.0%
! CAAATATAGTATAAGGAACT+TGG - Chr4:76892452-76892471 MsG0480022805.01.T01:CDS 25.0%
! CAAGTTCCTTATACTATATT+TGG + Chr4:76892454-76892473 None:intergenic 25.0%
! TTGTAACATCTATTTGTACT+TGG - Chr4:76891945-76891964 MsG0480022805.01.T01:intron 25.0%
!! AAAGTTGATCTATATGAGAA+TGG - Chr4:76890571-76890590 MsG0480022805.01.T01:CDS 25.0%
!!! CTCTTTTGTTTAATCTCATT+GGG - Chr4:76890749-76890768 MsG0480022805.01.T01:intron 25.0%
!!! TCTCTTTTGTTTAATCTCAT+TGG - Chr4:76890748-76890767 MsG0480022805.01.T01:intron 25.0%
AGATTGACGATTCTATTGAT+AGG - Chr4:76891693-76891712 MsG0480022805.01.T01:CDS 30.0%
ATAGAATCGTCAATCTCTTT+AGG + Chr4:76891689-76891708 None:intergenic 30.0%
ATGTTACAAACCAACTTTGT+GGG + Chr4:76891934-76891953 None:intergenic 30.0%
CATTTATCTAGACATCAGAA+AGG + Chr4:76892573-76892592 None:intergenic 30.0%
CTGAAATTCCAGTTGAAAAT+CGG - Chr4:76892890-76892909 MsG0480022805.01.T01:CDS 30.0%
GAACCTGATATAGAGAAAAA+CGG + Chr4:76891107-76891126 None:intergenic 30.0%
GCATTGAAGAAATCATATGA+TGG + Chr4:76892372-76892391 None:intergenic 30.0%
GTTTCTTGAGTATTTGGATA+AGG - Chr4:76890537-76890556 MsG0480022805.01.T01:CDS 30.0%
TATTGTTAGCATGAACCTTT+AGG + Chr4:76891536-76891555 None:intergenic 30.0%
TCATAATGCTCAAGAAGATT+CGG - Chr4:76890723-76890742 MsG0480022805.01.T01:intron 30.0%
TCTAAAAATTCCCACAAAGT+TGG - Chr4:76891921-76891940 MsG0480022805.01.T01:intron 30.0%
TGAAATTCCAGTTGAAAATC+GGG - Chr4:76892891-76892910 MsG0480022805.01.T01:CDS 30.0%
TTAGCTTCTTGAACAAATCA+CGG + Chr4:76891171-76891190 None:intergenic 30.0%
! AAATTGCATTGACACAGATA+AGG - Chr4:76892774-76892793 MsG0480022805.01.T01:CDS 30.0%
! ACATTTGGAATGTCTGATAT+TGG - Chr4:76892620-76892639 MsG0480022805.01.T01:CDS 30.0%
! ATCTAAAGCCAAGTTTCAAA+TGG - Chr4:76890879-76890898 MsG0480022805.01.T01:intron 30.0%
! GCAGCAGAAGAAATTATTTT+TGG - Chr4:76892128-76892147 MsG0480022805.01.T01:CDS 30.0%
! TATTGATCAGAATGTTTTGC+AGG - Chr4:76891470-76891489 MsG0480022805.01.T01:CDS 30.0%
AAGAGCTTCTTCAGAAATTC+AGG - Chr4:76890677-76890696 MsG0480022805.01.T01:intron 35.0%
AAGGAACATTAATGACCGAT+GGG - Chr4:76891732-76891751 MsG0480022805.01.T01:CDS 35.0%
AATGAAGCTGCTATATTAGC+TGG - Chr4:76891638-76891657 MsG0480022805.01.T01:intron 35.0%
AGAGCTTCTTCAGAAATTCA+GGG - Chr4:76890678-76890697 MsG0480022805.01.T01:intron 35.0%
CAACTCTTTGCAAGAATTGT+TGG - Chr4:76892089-76892108 MsG0480022805.01.T01:CDS 35.0%
CATAATGCTCAAGAAGATTC+GGG - Chr4:76890724-76890743 MsG0480022805.01.T01:intron 35.0%
GATGTTACAAACCAACTTTG+TGG + Chr4:76891935-76891954 None:intergenic 35.0%
GCTAATTTCTTACCCACAAA+TGG + Chr4:76891797-76891816 None:intergenic 35.0%
GTAACATTGCAATGAAAGCA+AGG - Chr4:76891848-76891867 MsG0480022805.01.T01:intron 35.0%
GTTAATGATACTCTTGCAGA+TGG - Chr4:76892592-76892611 MsG0480022805.01.T01:CDS 35.0%
TCATCAACAAAGACAATGCA+AGG + Chr4:76891204-76891223 None:intergenic 35.0%
TCTATTGATAGGATTGTTGC+TGG - Chr4:76891704-76891723 MsG0480022805.01.T01:CDS 35.0%
TGAGGCAATTGATAAGATTG+TGG - Chr4:76892804-76892823 MsG0480022805.01.T01:CDS 35.0%
TTAGATTGACCGAATTGCAT+AGG + Chr4:76890865-76890884 None:intergenic 35.0%
TTAGTGGCATATCATGAAGT+TGG - Chr4:76891766-76891785 MsG0480022805.01.T01:intron 35.0%
TTCATACCTGTCTATCGAAT+CGG + Chr4:76891404-76891423 None:intergenic 35.0%
TTCGAGGTTTCTTGAGTATT+TGG - Chr4:76890531-76890550 MsG0480022805.01.T01:CDS 35.0%
TTTCAAATGGAACCAAACAC+TGG - Chr4:76890892-76890911 MsG0480022805.01.T01:intron 35.0%
! CAACCAACTTTTGACAGAAA+TGG - Chr4:76891293-76891312 MsG0480022805.01.T01:CDS 35.0%
! CAACTTTTGACAGAAATGGA+CGG - Chr4:76891297-76891316 MsG0480022805.01.T01:CDS 35.0%
! CAATTACCTGTCTTGCTATA+CGG + Chr4:76892201-76892220 None:intergenic 35.0%
! GTTTGGTTCCATTTGAAACT+TGG + Chr4:76890890-76890909 None:intergenic 35.0%
! TCAGAATGTTTTGCAGGTAT+CGG - Chr4:76891476-76891495 MsG0480022805.01.T01:CDS 35.0%
! TGAATTTCTGAAGAAGCTCT+TGG + Chr4:76890678-76890697 None:intergenic 35.0%
! TGTTGAGATGTTTGTTGGTA+TGG - Chr4:76891133-76891152 MsG0480022805.01.T01:intron 35.0%
! TTCTGTCAAAAGTTGGTTGA+GGG + Chr4:76891292-76891311 None:intergenic 35.0%
! TTTCTGTCAAAAGTTGGTTG+AGG + Chr4:76891293-76891312 None:intergenic 35.0%
!! AGCATGAACCTTTAGGATTT+CGG + Chr4:76891529-76891548 None:intergenic 35.0%
!! CTTTGTGGGAATTTTTAGAG+TGG + Chr4:76891920-76891939 None:intergenic 35.0%
!! GAGTTTGTTGAGATGTTTGT+TGG - Chr4:76891128-76891147 MsG0480022805.01.T01:intron 35.0%
!! GTTCCGTTTTTCTCTATATC+AGG - Chr4:76891101-76891120 MsG0480022805.01.T01:intron 35.0%
!!! AATTATTTTTGGTGAGCCTG+AGG - Chr4:76892139-76892158 MsG0480022805.01.T01:CDS 35.0%
!!! GTTGTTTTGAGATCAGAGTT+GGG + Chr4:76892070-76892089 None:intergenic 35.0%
!!! TGACTTTTGATGATGTTGCT+GGG - Chr4:76890917-76890936 MsG0480022805.01.T01:intron 35.0%
!!! TGTTGTTTTGAGATCAGAGT+TGG + Chr4:76892071-76892090 None:intergenic 35.0%
AAAATGTTAACTACTGCCCC+CGG - Chr4:76892412-76892431 MsG0480022805.01.T01:intron 40.0%
AAATCACCGTATAGCAAGAC+AGG - Chr4:76892192-76892211 MsG0480022805.01.T01:CDS 40.0%
AAATCTGCAGCATCGTTGTA+AGG + Chr4:76892511-76892530 None:intergenic 40.0%
AACGATGCTGCAGATTTAGA+AGG - Chr4:76892514-76892533 MsG0480022805.01.T01:CDS 40.0%
AAGCTGCTATATTAGCTGGT+CGG - Chr4:76891642-76891661 MsG0480022805.01.T01:intron 40.0%
AATTTCTCAAGAAGCCTGAG+AGG - Chr4:76890977-76890996 MsG0480022805.01.T01:intron 40.0%
AGAATTGTTGGAGGATTAGG+TGG - Chr4:76892101-76892120 MsG0480022805.01.T01:CDS 40.0%
ATCTGACAATCTCTTGACAG+CGG + Chr4:76892744-76892763 None:intergenic 40.0%
ATGGGAAGAGCAAAGTTTAG+TGG - Chr4:76891750-76891769 MsG0480022805.01.T01:intron 40.0%
CCAAAAGGAGTTCTTCTTGT+TGG - Chr4:76891024-76891043 MsG0480022805.01.T01:intron 40.0%
CCTGGATTTCCTATGCAATT+CGG - Chr4:76890853-76890872 MsG0480022805.01.T01:intron 40.0%
CGTCCATTTCTGTCAAAAGT+TGG + Chr4:76891299-76891318 None:intergenic 40.0%
CTAAACTTTGCTCTTCCCAT+CGG + Chr4:76891750-76891769 None:intergenic 40.0%
CTCTTTGCAAGAATTGTTGG+AGG - Chr4:76892092-76892111 MsG0480022805.01.T01:CDS 40.0%
GAAGGAACATTAATGACCGA+TGG - Chr4:76891731-76891750 MsG0480022805.01.T01:CDS 40.0%
GAATGTCTGATATTGGTCCT+TGG - Chr4:76892627-76892646 MsG0480022805.01.T01:CDS 40.0%
GCAAGAATTGTTGGAGGATT+AGG - Chr4:76892098-76892117 MsG0480022805.01.T01:CDS 40.0%
GGCGATGTTATCATGAGAAT+GGG - Chr4:76892676-76892695 MsG0480022805.01.T01:CDS 40.0%
GTTGATGTTCCAGATGTAAG+GGG - Chr4:76891498-76891517 MsG0480022805.01.T01:intron 40.0%
TAACGCAGAGTCAAGAATGT+CGG + Chr4:76891370-76891389 None:intergenic 40.0%
TAAGATTGTGGAAGTCCTTC+TGG - Chr4:76892816-76892835 MsG0480022805.01.T01:CDS 40.0%
TATTGGTCCTTGGTCACTTA+TGG - Chr4:76892637-76892656 MsG0480022805.01.T01:CDS 40.0%
TCAAAAGTCACTCCAGTGTT+TGG + Chr4:76890907-76890926 None:intergenic 40.0%
TGATAGGATTGTTGCTGGAA+TGG - Chr4:76891709-76891728 MsG0480022805.01.T01:CDS 40.0%
TGCAACCTATTTCCCAATTC+AGG + Chr4:76890625-76890644 None:intergenic 40.0%
TGGAACCATAGCTATTGTTG+AGG - Chr4:76890591-76890610 MsG0480022805.01.T01:CDS 40.0%
TGGCGATGTTATCATGAGAA+TGG - Chr4:76892675-76892694 MsG0480022805.01.T01:CDS 40.0%
TGTCTCCTGAATTGGGAAAT+AGG - Chr4:76890617-76890636 MsG0480022805.01.T01:CDS 40.0%
TGTTATCATGAGAATGGGCA+AGG - Chr4:76892681-76892700 MsG0480022805.01.T01:CDS 40.0%
TGTTGTTGCTGCAACTAACA+GGG - Chr4:76891344-76891363 MsG0480022805.01.T01:CDS 40.0%
TTGCAGATGGTAGTCACATT+TGG - Chr4:76892605-76892624 MsG0480022805.01.T01:CDS 40.0%
! AAGTTGGTCATGCCATTTGT+GGG - Chr4:76891782-76891801 MsG0480022805.01.T01:intron 40.0%
! ACAGAAATGGACGGATTTGA+GGG - Chr4:76891306-76891325 MsG0480022805.01.T01:CDS 40.0%
! CCAACAAGAAGAACTCCTTT+TGG + Chr4:76891027-76891046 None:intergenic 40.0%
! GCAATGAAAGCAAGGTTTTG+TGG - Chr4:76891856-76891875 MsG0480022805.01.T01:intron 40.0%
! GGTTGATGTTCCAGATGTAA+GGG - Chr4:76891497-76891516 MsG0480022805.01.T01:intron 40.0%
! GTTGATGAAATTGACGCTGT+TGG - Chr4:76891216-76891235 MsG0480022805.01.T01:intron 40.0%
! TGAAGCCAAGCAGGATTTTA+TGG - Chr4:76890945-76890964 MsG0480022805.01.T01:intron 40.0%
! TTGTTGTTGCTGCAACTAAC+AGG - Chr4:76891343-76891362 MsG0480022805.01.T01:CDS 40.0%
!!! GACTTTTGATGATGTTGCTG+GGG - Chr4:76890918-76890937 MsG0480022805.01.T01:intron 40.0%
!!! GTGACTTTTGATGATGTTGC+TGG - Chr4:76890916-76890935 MsG0480022805.01.T01:intron 40.0%
AAATGTTAACTACTGCCCCC+GGG - Chr4:76892413-76892432 MsG0480022805.01.T01:intron 45.0%
AAGGTGACATTAGTTCCTCG+AGG - Chr4:76892005-76892024 MsG0480022805.01.T01:intron 45.0%
AATACACCAATGACAGCAGC+AGG + Chr4:76890787-76890806 None:intergenic 45.0%
ACGCTGTTGGAAGACAAAGA+GGG - Chr4:76891229-76891248 MsG0480022805.01.T01:intron 45.0%
AGACAAAGAGGGACAGGAAT+TGG - Chr4:76891240-76891259 MsG0480022805.01.T01:intron 45.0%
AGGATTGTTGCTGGAATGGA+AGG - Chr4:76891713-76891732 MsG0480022805.01.T01:CDS 45.0%
ATACACCAATGACAGCAGCA+GGG + Chr4:76890786-76890805 None:intergenic 45.0%
ATGAGAACACCTGGTTTCAG+CGG - Chr4:76891593-76891612 MsG0480022805.01.T01:intron 45.0%
ATGTTCCAGATGTAAGGGGA+AGG - Chr4:76891502-76891521 MsG0480022805.01.T01:intron 45.0%
CAACAAAGTCTTTCGGTTCC+TGG + Chr4:76891054-76891073 None:intergenic 45.0%
CACAGATAAGGAACAACGTG+AGG - Chr4:76892786-76892805 MsG0480022805.01.T01:CDS 45.0%
CACAGCCTCAACAATAGCTA+TGG + Chr4:76890599-76890618 None:intergenic 45.0%
CACCTCCATAAAATCCTGCT+TGG + Chr4:76890953-76890972 None:intergenic 45.0%
CAGGAACCGAAAGACTTTGT+TGG - Chr4:76891052-76891071 MsG0480022805.01.T01:intron 45.0%
CCGAATTGCATAGGAAATCC+AGG + Chr4:76890856-76890875 None:intergenic 45.0%
CCTTGGCCAACAAAGTCTTT+CGG + Chr4:76891061-76891080 None:intergenic 45.0%
GCAGCATCGTTGTAAGGAAT+AGG + Chr4:76892505-76892524 None:intergenic 45.0%
GTGATTGCAATGAGAACACC+TGG - Chr4:76891584-76891603 MsG0480022805.01.T01:intron 45.0%
GTGTATTGTTCCTTCTCTCG+AGG - Chr4:76890800-76890819 MsG0480022805.01.T01:intron 45.0%
TAAACTCTGACAGTAGAGCG+CGG + Chr4:76892870-76892889 None:intergenic 45.0%
TATTGTTCCTTCTCTCGAGG+CGG - Chr4:76890803-76890822 MsG0480022805.01.T01:intron 45.0%
TCAATGTCTCCTTCTCCAGA+AGG + Chr4:76892834-76892853 None:intergenic 45.0%
TGAGATCAGAGTTGGGTCAT+CGG + Chr4:76892063-76892082 None:intergenic 45.0%
TGCAGCAACAACAATGACAC+CGG + Chr4:76891337-76891356 None:intergenic 45.0%
TGGTCATGATGCGGTACAAA+AGG - Chr4:76891986-76892005 MsG0480022805.01.T01:intron 45.0%
TGTTGGAGGATTAGGTGGTA+GGG - Chr4:76892106-76892125 MsG0480022805.01.T01:CDS 45.0%
TTGTTGGAGGATTAGGTGGT+AGG - Chr4:76892105-76892124 MsG0480022805.01.T01:CDS 45.0%
TTTGACTCCTGGTCATGATG+CGG - Chr4:76891977-76891996 MsG0480022805.01.T01:intron 45.0%
! AGCCAAGCAGGATTTTATGG+AGG - Chr4:76890948-76890967 MsG0480022805.01.T01:intron 45.0%
! CAAGCAGGATTTTATGGAGG+TGG - Chr4:76890951-76890970 MsG0480022805.01.T01:intron 45.0%
! CGGTTGATGTTCCAGATGTA+AGG - Chr4:76891496-76891515 MsG0480022805.01.T01:intron 45.0%
! GAAGTTGGTCATGCCATTTG+TGG - Chr4:76891781-76891800 MsG0480022805.01.T01:intron 45.0%
! GACAGAAATGGACGGATTTG+AGG - Chr4:76891305-76891324 MsG0480022805.01.T01:CDS 45.0%
! GACGGATTTGAGGGTAATAC+CGG - Chr4:76891315-76891334 MsG0480022805.01.T01:CDS 45.0%
! TTTTGTACCGCATCATGACC+AGG + Chr4:76891987-76892006 None:intergenic 45.0%
!!! TTTTGATGATGTTGCTGGGG+TGG - Chr4:76890921-76890940 MsG0480022805.01.T01:intron 45.0%
AAGGCTATTGCTGGTGAAGC+GGG - Chr4:76891077-76891096 MsG0480022805.01.T01:intron 50.0%
ACTGCTACTGGAGTTGAAGG+AGG + Chr4:76892919-76892938 None:intergenic 50.0%
AGAAGCTCTTGGCTAAGTCC+AGG + Chr4:76890667-76890686 None:intergenic 50.0%
ATAGGAAATCCAGGTCCACC+GGG + Chr4:76890847-76890866 None:intergenic 50.0%
ATCAGAGTTGGGTCATCGGA+AGG + Chr4:76892059-76892078 None:intergenic 50.0%
CAAAGAGGGACAGGAATTGG+TGG - Chr4:76891243-76891262 MsG0480022805.01.T01:intron 50.0%
CAAAGTCTTTCGGTTCCTGG+AGG + Chr4:76891051-76891070 None:intergenic 50.0%
CAAGGCTATTGCTGGTGAAG+CGG - Chr4:76891076-76891095 MsG0480022805.01.T01:intron 50.0%
CATAGGAAATCCAGGTCCAC+CGG + Chr4:76890848-76890867 None:intergenic 50.0%
CCAACAGAAGTGAACCTCTC+AGG + Chr4:76890994-76891013 None:intergenic 50.0%
CCGAAAGACTTTGTTGGCCA+AGG - Chr4:76891058-76891077 MsG0480022805.01.T01:intron 50.0%
CCTGAGAGGTTCACTTCTGT+TGG - Chr4:76890991-76891010 MsG0480022805.01.T01:intron 50.0%
CTGGAGAAGGAGACATTGAG+TGG - Chr4:76892835-76892854 MsG0480022805.01.T01:CDS 50.0%
GACGAGTCCATAAGTGACCA+AGG + Chr4:76892647-76892666 None:intergenic 50.0%
GACGCTGTTGGAAGACAAAG+AGG - Chr4:76891228-76891247 MsG0480022805.01.T01:intron 50.0%
GACTCTGCGTTATTGAGACC+AGG - Chr4:76891378-76891397 MsG0480022805.01.T01:CDS 50.0%
GAGGCTGTGTCTCCTGAATT+GGG - Chr4:76890610-76890629 MsG0480022805.01.T01:CDS 50.0%
GGGAAGGACCGAAATCCTAA+AGG - Chr4:76891518-76891537 MsG0480022805.01.T01:intron 50.0%
GGTTGCAGAACTTTGACTCC+TGG - Chr4:76891966-76891985 MsG0480022805.01.T01:intron 50.0%
GTTCTTCTTGTTGGTCCTCC+AGG - Chr4:76891033-76891052 MsG0480022805.01.T01:intron 50.0%
GTTGGAAGACAAAGAGGGAC+AGG - Chr4:76891234-76891253 MsG0480022805.01.T01:intron 50.0%
TAGTTCCTCGAGGTCAAGCT+CGG - Chr4:76892015-76892034 MsG0480022805.01.T01:intron 50.0%
TATGGACTCGTCAGCACAAG+TGG - Chr4:76892655-76892674 MsG0480022805.01.T01:CDS 50.0%
TGAGGCTGTGTCTCCTGAAT+TGG - Chr4:76890609-76890628 MsG0480022805.01.T01:CDS 50.0%
TGGTTTCCTTAACCAGTGCC+CGG + Chr4:76892434-76892453 None:intergenic 50.0%
TTGTTGGCCAAGGCTATTGC+TGG - Chr4:76891068-76891087 MsG0480022805.01.T01:intron 50.0%
! CGTGTTCGAGTTCAACTTCC+TGG - Chr4:76890646-76890665 MsG0480022805.01.T01:CDS 50.0%
! GGAGGAACCCGATTTTCAAC+TGG + Chr4:76892901-76892920 None:intergenic 50.0%
! GTTGGTGCTCGCATTCCAAA+AGG - Chr4:76891009-76891028 MsG0480022805.01.T01:intron 50.0%
! TGTGGAAGTCCTTCTGGAGA+AGG - Chr4:76892822-76892841 MsG0480022805.01.T01:CDS 50.0%
ACCTGTCTATCGAATCGGCC+TGG + Chr4:76891399-76891418 None:intergenic 55.0%
AGAGGGACAGGAATTGGTGG+AGG - Chr4:76891246-76891265 MsG0480022805.01.T01:intron 55.0%
AGATCAGCTCCGCTGAAACC+AGG + Chr4:76891605-76891624 None:intergenic 55.0%
AGTTCCTCGAGGTCAAGCTC+GGG - Chr4:76892016-76892035 MsG0480022805.01.T01:intron 55.0%
CCTGAGGTTACAACTGGTGC+AGG - Chr4:76892155-76892174 MsG0480022805.01.T01:CDS 55.0%
CCTGCACCAGTTGTAACCTC+AGG + Chr4:76892158-76892177 None:intergenic 55.0%
CGCTTCACCAGCAATAGCCT+TGG + Chr4:76891078-76891097 None:intergenic 55.0%
GAGGGACAGGAATTGGTGGA+GGG - Chr4:76891247-76891266 MsG0480022805.01.T01:intron 55.0%
GAGGTTACAACTGGTGCAGG+TGG - Chr4:76892158-76892177 MsG0480022805.01.T01:CDS 55.0%
GCTATATTAGCTGGTCGGCG+AGG - Chr4:76891647-76891666 MsG0480022805.01.T01:intron 55.0%
GCTTTCCCTGCTGCTGTCAT+TGG - Chr4:76890778-76890797 MsG0480022805.01.T01:intron 55.0%
GGGACTGCTACTGGAGTTGA+AGG + Chr4:76892922-76892941 None:intergenic 55.0%
GGTGAGCCTGAGGTTACAAC+TGG - Chr4:76892149-76892168 MsG0480022805.01.T01:CDS 55.0%
GGTTTCCTTAACCAGTGCCC+GGG + Chr4:76892433-76892452 None:intergenic 55.0%
GTCAAGCTCGGGGTCTTACA+TGG - Chr4:76892027-76892046 MsG0480022805.01.T01:intron 55.0%
GTTTCCTTAACCAGTGCCCG+GGG + Chr4:76892432-76892451 None:intergenic 55.0%
TATTAGCTGGTCGGCGAGGA+AGG - Chr4:76891651-76891670 MsG0480022805.01.T01:intron 55.0%
TCGGTCCTTCCCCTTACATC+TGG + Chr4:76891510-76891529 None:intergenic 55.0%
TTTCCTTAACCAGTGCCCGG+GGG + Chr4:76892431-76892450 None:intergenic 55.0%
!! ACCAGGCCGATTCGATAGAC+AGG - Chr4:76891395-76891414 MsG0480022805.01.T01:CDS 55.0%
GTTCCTCGAGGTCAAGCTCG+GGG - Chr4:76892017-76892036 MsG0480022805.01.T01:intron 60.0%
TGGGGTGGATGAAGCCAAGC+AGG - Chr4:76890936-76890955 MsG0480022805.01.T01:intron 60.0%
TTCCTTCTCTCGAGGCGGTC+CGG - Chr4:76890808-76890827 MsG0480022805.01.T01:intron 60.0%
ACCGGGACCTCCCATTCCAC+CGG + Chr4:76890830-76890849 None:intergenic 65.0%
AGACCCCGAGCTTGACCTCG+AGG + Chr4:76892023-76892042 None:intergenic 65.0%
CTGGTCGGCGAGGAAGGACA+GGG - Chr4:76891657-76891676 MsG0480022805.01.T01:intron 65.0%
TAACTACTGCCCCCGGGCAC+TGG - Chr4:76892419-76892438 MsG0480022805.01.T01:intron 65.0%
TCCGGTGGAATGGGAGGTCC+CGG - Chr4:76890826-76890845 MsG0480022805.01.T01:intron 65.0%
TCGAGGCGGTCCGGTGGAAT+GGG - Chr4:76890817-76890836 MsG0480022805.01.T01:intron 65.0%
AGGCGGTCCGGTGGAATGGG+AGG - Chr4:76890820-76890839 MsG0480022805.01.T01:intron 70.0%
ATGGGAGGTCCCGGTGGACC+TGG - Chr4:76890835-76890854 MsG0480022805.01.T01:intron 70.0%
CACCGGACCGCCTCGAGAGA+AGG + Chr4:76890813-76890832 None:intergenic 70.0%
CTCGAGGCGGTCCGGTGGAA+TGG - Chr4:76890816-76890835 MsG0480022805.01.T01:intron 70.0%
CTTCTCTCGAGGCGGTCCGG+TGG - Chr4:76890811-76890830 MsG0480022805.01.T01:intron 70.0%
GCTGGTCGGCGAGGAAGGAC+AGG - Chr4:76891656-76891675 MsG0480022805.01.T01:intron 70.0%
GGTGGAATGGGAGGTCCCGG+TGG - Chr4:76890829-76890848 MsG0480022805.01.T01:intron 70.0%
!! CTGCCCCCGGGCACTGGTTA+AGG - Chr4:76892425-76892444 MsG0480022805.01.T01:intron 70.0%
Chromosome Type Strat End Strand Name
Chr4 gene 76890523 76892948 76890523 ID=MsG0480022805.01;Name=MsG0480022805.01
Chr4 mRNA 76890523 76892948 76890523 ID=MsG0480022805.01.T01;Parent=MsG0480022805.01;Name=MsG0480022805.01.T01;_AED=0.49;_eAED=0.50;_QI=0|0.4|0|1|1|1|6|0|409
Chr4 exon 76892426 76892948 76892426 ID=MsG0480022805.01.T01:exon:8642;Parent=MsG0480022805.01.T01
Chr4 exon 76892055 76892287 76892055 ID=MsG0480022805.01.T01:exon:8641;Parent=MsG0480022805.01.T01
Chr4 exon 76891959 76891979 76891959 ID=MsG0480022805.01.T01:exon:8640;Parent=MsG0480022805.01.T01
Chr4 exon 76891668 76891756 76891668 ID=MsG0480022805.01.T01:exon:8639;Parent=MsG0480022805.01.T01
Chr4 exon 76891292 76891497 76891292 ID=MsG0480022805.01.T01:exon:8638;Parent=MsG0480022805.01.T01
Chr4 exon 76890523 76890680 76890523 ID=MsG0480022805.01.T01:exon:8637;Parent=MsG0480022805.01.T01
Chr4 CDS 76892426 76892948 76892426 ID=MsG0480022805.01.T01:cds;Parent=MsG0480022805.01.T01
Chr4 CDS 76892055 76892287 76892055 ID=MsG0480022805.01.T01:cds;Parent=MsG0480022805.01.T01
Chr4 CDS 76891959 76891979 76891959 ID=MsG0480022805.01.T01:cds;Parent=MsG0480022805.01.T01
Chr4 CDS 76891668 76891756 76891668 ID=MsG0480022805.01.T01:cds;Parent=MsG0480022805.01.T01
Chr4 CDS 76891292 76891497 76891292 ID=MsG0480022805.01.T01:cds;Parent=MsG0480022805.01.T01
Chr4 CDS 76890523 76890680 76890523 ID=MsG0480022805.01.T01:cds;Parent=MsG0480022805.01.T01
Gene Sequence

>MsG0480022805.01.T01

ATGTCGTATTCGAGGTTTCTTGAGTATTTGGATAAGGATAGAGTTACCAAAGTTGATCTATATGAGAATGGAACCATAGCTATTGTTGAGGCTGTGTCTCCTGAATTGGGAAATAGGTTGCAGCGTGTTCGAGTTCAACTTCCTGGACTTAGCCAAGAGCTTCTTCAGAAATTCAGGGAAAAGAACATTGACTTTGCAGCTCATAATGCTCAAGAAGATTCGGGTTCTCTTTTGTTTAATCTCATTGGGAATCTTGCTTTCCCTGCTGCTGTCATTGGTGTATTGTTCCTTCTCTCGAGGCGGTCCGGTGGAATGGGAGGTCCCGGTGGACCTGGATTTCCTATGCAATTCGGTCAATCTAAAGCCAAGTTTCAAATGGAACCAAACACTGGAGTGACTTTTGATGATGTTGCTGGGGTGGATGAAGCCAAGCAGGATTTTATGGAGGTGGTTGAATTTCTCAAGAAGCCTGAGAGGTTCACTTCTGTTGGTGCTCGCATTCCAAAAGGAGTTCTTCTTGTTGAAGCTAAAGAGAATGCTCCTTGCATTGTCTTTGTTGATGAAATTGACGCTGTTGGAAGACAAAGAGGGACAGGAATTGGTGGAGGGAATGACGAAAGAGAACAGACCCTCAACCAACTTTTGACAGAAATGGACGGATTTGAGGGTAATACCGGTGTCATTGTTGTTGCTGCAACTAACAGGGCCGACATTCTTGACTCTGCGTTATTGAGACCAGGCCGATTCGATAGACAGGTATCGGTTGATGTTCCAGATGATTGTTGCTGGAATGGAAGGAACATTAATGACCGATGGGAAGAGCAAAGTTTAGTGGCATATCATGAAGTTGGTCATGCCATTTGTGGAACTTTGACTCCTGGTCATGATGCGGTACAAAAGGTGACATTAGTTCCTCGAGGTCAAGCTCGGGGTCTTACATGGTTCATTCCTTCCGATGACCCAACTCTGATCTCAAAACAACAACTCTTTGCAAGAATTGTTGGAGGATTAGGTGGTAGGGCAGCAGAAGAAATTATTTTTGGTGAGCCTGAGGTTACAACTGGTGCAGGTGATAAGGAACAACGTGAGGCAATTGATAAGATTGTGGAAGTCCTTCTGGAGAAGGAGACATTGAGTGGAGATGAATTCCGCGCTCTACTGTCAGAGTTTACTGAAATTCCAGTTGAAAATCGGGTTCCTCCTTCAACTCCAGTAGCAGTCCCTGTTTGA

Protein sequence

>MsG0480022805.01.T01

MSYSRFLEYLDKDRVTKVDLYENGTIAIVEAVSPELGNRLQRVRVQLPGLSQELLQKFREKNIDFAAHNAQEDSGSLLFNLIGNLAFPAAVIGVLFLLSRRSGGMGGPGGPGFPMQFGQSKAKFQMEPNTGVTFDDVAGVDEAKQDFMEVVEFLKKPERFTSVGARIPKGVLLVEAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGVIVVAATNRADILDSALLRPGRFDRQVSVDVPDDCCWNGRNINDRWEEQSLVAYHEVGHAICGTLTPGHDAVQKVTLVPRGQARGLTWFIPSDDPTLISKQQLFARIVGGLGGRAAEEIIFGEPEVTTGAGDKEQREAIDKIVEVLLEKETLSGDEFRALLSEFTEIPVENRVPPSTPVAVPV*