AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0580028073.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0580028073.01.T01 MTR_5g068860 94.325 511 26 1 1 508 1 511 0.0 959
MsG0580028073.01.T01 MTR_1g115415 52.500 400 188 1 100 499 71 468 2.28e-153 447
MsG0580028073.01.T01 MTR_8g105560 43.750 400 170 3 100 499 49 393 3.00e-110 338
MsG0580028073.01.T01 MTR_4g070060 27.887 355 248 4 133 481 235 587 2.81e-36 142
MsG0580028073.01.T01 MTR_4g084630 21.935 310 204 3 173 480 46 319 6.44e-31 122
MsG0580028073.01.T01 MTR_4g084630 22.727 220 161 3 138 348 43 262 5.38e-15 76.6
MsG0580028073.01.T01 MTR_2g034600 27.740 292 201 6 203 491 210 494 1.33e-28 119
MsG0580028073.01.T01 MTR_2g034600 21.277 282 173 6 136 372 211 488 2.27e-12 69.7
MsG0580028073.01.T01 MTR_2g034600 27.740 292 201 6 203 491 275 559 1.99e-28 119
MsG0580028073.01.T01 MTR_2g034600 21.277 282 173 6 136 372 276 553 2.26e-12 69.7
MsG0580028073.01.T01 MTR_2g034600 27.740 292 201 6 203 491 271 555 2.02e-28 119
MsG0580028073.01.T01 MTR_2g034600 21.277 282 173 6 136 372 272 549 2.72e-12 69.3
MsG0580028073.01.T01 MTR_5g094610 24.242 330 203 7 168 489 191 481 4.41e-25 108
MsG0580028073.01.T01 MTR_5g094610 23.729 236 167 5 131 358 221 451 3.75e-12 68.9
MsG0580028073.01.T01 MTR_6g003960 24.924 329 241 6 153 479 263 587 4.89e-23 103
MsG0580028073.01.T01 MTR_2g049780 26.136 264 154 7 220 481 82 306 2.02e-19 89.4
MsG0580028073.01.T01 MTR_2g067230 22.302 278 169 5 208 484 73 304 1.52e-15 78.2
MsG0580028073.01.T01 MTR_5g041630 25.461 271 158 6 208 476 61 289 1.57e-15 77.8
MsG0580028073.01.T01 MTR_3g092710 23.096 407 264 14 116 479 91 491 1.16e-13 73.6
MsG0580028073.01.T01 MTR_2g438020 21.038 366 251 11 130 479 72 415 1.37e-11 67.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0580028073.01.T01 AT4G02990 67.308 520 154 4 1 507 3 519 0.0 675
MsG0580028073.01.T01 AT4G02990 67.308 520 154 4 1 507 3 519 0.0 675
MsG0580028073.01.T01 AT2G44020 48.883 403 204 1 100 502 76 476 7.37e-143 421
MsG0580028073.01.T01 AT2G21710 26.611 357 256 3 132 483 241 596 3.39e-40 154
MsG0580028073.01.T01 AT2G21710 24.101 278 195 6 99 361 274 550 4.56e-17 84.7
MsG0580028073.01.T01 AT4G38160 23.913 276 207 3 216 488 54 329 1.17e-30 122
MsG0580028073.01.T01 AT4G38160 21.145 227 166 5 134 348 39 264 3.59e-14 74.3
MsG0580028073.01.T01 AT4G38160 23.913 276 207 3 216 488 54 329 1.17e-30 122
MsG0580028073.01.T01 AT4G38160 21.145 227 166 5 134 348 39 264 3.59e-14 74.3
MsG0580028073.01.T01 AT4G38160 23.913 276 207 3 216 488 54 329 1.62e-30 122
MsG0580028073.01.T01 AT4G38160 21.145 227 166 5 134 348 39 264 2.85e-14 74.7
MsG0580028073.01.T01 AT4G38160 23.913 276 207 3 216 488 54 329 2.61e-30 122
MsG0580028073.01.T01 AT4G38160 21.145 227 166 5 134 348 39 264 5.44e-14 73.9
MsG0580028073.01.T01 AT2G21710 24.290 317 234 3 132 443 241 556 3.61e-27 115
MsG0580028073.01.T01 AT2G21710 24.101 278 195 6 99 361 274 550 3.58e-17 84.7
MsG0580028073.01.T01 AT2G21710 24.444 315 232 3 132 441 241 554 8.48e-27 114
MsG0580028073.01.T01 AT2G21710 24.101 278 195 6 99 361 274 550 4.65e-17 84.7
MsG0580028073.01.T01 AT4G14605 26.757 370 250 8 119 480 112 468 5.43e-25 108
MsG0580028073.01.T01 AT4G14605 26.757 370 250 8 119 480 112 468 5.43e-25 108
MsG0580028073.01.T01 AT1G78930 22.492 329 250 5 153 479 249 574 9.95e-22 99.0
MsG0580028073.01.T01 AT5G55580 23.203 306 224 7 161 461 38 337 3.34e-20 93.2
MsG0580028073.01.T01 AT5G55580 24.359 234 166 5 129 355 106 335 1.71e-13 72.8
MsG0580028073.01.T01 AT5G55580 23.203 306 224 7 161 461 144 443 1.06e-19 92.4
MsG0580028073.01.T01 AT5G55580 24.359 234 166 5 129 355 212 441 2.89e-13 72.4
MsG0580028073.01.T01 AT2G34620 27.245 323 189 8 163 481 12 292 1.63e-18 86.7
MsG0580028073.01.T01 AT1G61970 24.719 356 249 8 145 491 61 406 3.26e-16 81.3
MsG0580028073.01.T01 AT1G61970 24.719 356 249 8 145 491 61 406 3.26e-16 81.3
MsG0580028073.01.T01 AT1G61970 24.719 356 249 8 145 491 61 406 3.26e-16 81.3
MsG0580028073.01.T01 AT1G61970 24.719 356 249 8 145 491 61 406 3.26e-16 81.3
MsG0580028073.01.T01 AT1G61970 24.719 356 249 8 145 491 61 406 3.26e-16 81.3
MsG0580028073.01.T01 AT1G61970 24.719 356 249 8 145 491 61 406 3.26e-16 81.3
MsG0580028073.01.T01 AT1G61970 24.719 356 249 8 145 491 61 406 3.26e-16 81.3
MsG0580028073.01.T01 AT5G55580 23.364 214 156 5 169 378 185 394 5.04e-13 71.2
MsG0580028073.01.T01 AT5G55580 22.543 173 132 2 172 342 223 395 2.23e-11 66.2
MsG0580028073.01.T01 AT2G03050 23.466 277 167 8 210 483 39 273 5.95e-13 69.7
MsG0580028073.01.T01 AT2G03050 23.466 277 167 8 210 483 38 272 6.04e-13 69.7
MsG0580028073.01.T01 AT1G62120 23.125 320 230 6 145 459 65 373 1.39e-12 70.1
MsG0580028073.01.T01 AT5G64950 23.413 252 186 4 207 455 74 321 8.79e-12 67.4
MsG0580028073.01.T01 AT5G54180 24.051 395 232 11 112 484 145 493 1.05e-11 67.4
MsG0580028073.01.T01 AT3G18870 26.846 149 105 2 332 479 123 268 1.34e-11 65.5
MsG0580028073.01.T01 AT3G46950 20.972 391 253 9 142 488 58 436 5.17e-11 65.1

Find 125 sgRNAs with CRISPR-Local

Find 144 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AACTAGATTCCCGGAGATTT+TGG 0.122651 5:+74193773 MsG0580028073.01.T01:CDS
GCTTGATTACCTTGGTAAAT+TGG 0.181028 5:+74193503 MsG0580028073.01.T01:CDS
GAGACACAACCTTATATTCT+TGG 0.218625 5:+74193882 MsG0580028073.01.T01:CDS
TTCCCAGCATTCTTCACTTA+TGG 0.257292 5:+74194308 MsG0580028073.01.T01:CDS
AATTGCCATGTAATTGTATT+AGG 0.259846 5:+74193100 MsG0580028073.01.T01:CDS
GGAAAGGCCTTTGGAAGATT+TGG 0.281167 5:+74194280 MsG0580028073.01.T01:CDS
GCTCAATTCTATGCTTGATT+TGG 0.282024 5:+74194052 MsG0580028073.01.T01:CDS
TTATATTCTTGGATTCGATT+TGG 0.301999 5:+74193893 MsG0580028073.01.T01:CDS
ACATCTGTTGCTTATTTGAT+TGG 0.305827 5:+74193714 MsG0580028073.01.T01:CDS
AGCATTCTTCACTTATGGTT+TGG 0.313050 5:+74194313 MsG0580028073.01.T01:CDS
GTTTGGGAAAATGGGAAATT+CGG 0.329600 5:-74193018 None:intergenic
AGTTTGAATCCCAACACTTC+AGG 0.346326 5:-74193675 None:intergenic
GCCGGTGGTCAAGTATCTTC+AGG 0.347359 5:+74193605 MsG0580028073.01.T01:CDS
TTCATAACATCAACCGTAAC+AGG 0.355753 5:-74193378 None:intergenic
GAATGACCAAATGTTAGAAT+TGG 0.365180 5:-74193048 None:intergenic
AAGCTTCAATGTTCTGTTGC+TGG 0.371075 5:+74193141 MsG0580028073.01.T01:CDS
GATTTGGATTCTGAGGATTT+CGG 0.371653 5:+74194068 MsG0580028073.01.T01:CDS
GGACTATGACACTATTGATA+TGG 0.372055 5:+74194439 MsG0580028073.01.T01:CDS
GTTGCTTATTTGATTGGAAT+TGG 0.373643 5:+74193720 MsG0580028073.01.T01:CDS
ACCTTGGTAAATTGGGAGTT+AGG 0.378790 5:+74193511 MsG0580028073.01.T01:CDS
AAAATGCCAATTCTAACATT+TGG 0.379697 5:+74193042 MsG0580028073.01.T01:CDS
CTTCTCTTATCTGCAAGCTT+TGG 0.382697 5:-74194026 None:intergenic
CTTGATTACCTTGGTAAATT+GGG 0.382917 5:+74193504 MsG0580028073.01.T01:CDS
TCTTCGAGGGATTTGACGTT+TGG 0.385296 5:-74193930 None:intergenic
AAATCGAATCCAAGAATATA+AGG 0.400009 5:-74193891 None:intergenic
ACCCGCATCCCCAAAATCTC+CGG 0.400611 5:-74193783 None:intergenic
TAACAACTATCCTCTTGTAC+TGG 0.404481 5:+74193449 MsG0580028073.01.T01:CDS
AATCTGATTCATCGCTCCTT+TGG 0.406635 5:-74194509 None:intergenic
TATCTGCAAGCTTTGGCTCT+AGG 0.421664 5:-74194019 None:intergenic
TGATATGGAAGAGATGGAAA+TGG 0.426007 5:+74194454 MsG0580028073.01.T01:CDS
TATGAGTTCTTGCGAGGAAT+CGG 0.426180 5:+74193321 MsG0580028073.01.T01:CDS
GCTCAGTATCCTGGCATCAT+TGG 0.430587 5:+74193990 MsG0580028073.01.T01:CDS
TCTATAATTGCTCAGTATCC+TGG 0.434415 5:+74193981 MsG0580028073.01.T01:CDS
AGGTATCTTAACTAGATTCC+CGG 0.436019 5:+74193764 MsG0580028073.01.T01:CDS
ATGCAGTGTCAAGAAGAATA+TGG 0.439827 5:+74193473 MsG0580028073.01.T01:CDS
GATTAAAGTGTTCTCTGGCT+TGG 0.440477 5:+74194378 MsG0580028073.01.T01:CDS
GTAATTGTATTAGGAAGATA+AGG 0.444282 5:+74193109 MsG0580028073.01.T01:CDS
GAAAGGATTAAAGTGTTCTC+TGG 0.449764 5:+74194373 MsG0580028073.01.T01:CDS
CATAACATGGTTACTAAGAA+AGG 0.450093 5:+74194356 MsG0580028073.01.T01:CDS
TCAAGACCATCAAGTTCATC+AGG 0.450633 5:-74193351 None:intergenic
AAGTGAGATGGAAAGGCCTT+TGG 0.454521 5:+74194271 MsG0580028073.01.T01:CDS
CTGGTAGGACGTATAGTTAT+AGG 0.454647 5:+74193160 MsG0580028073.01.T01:CDS
ATTGTTCCTGATGAACTTGA+TGG 0.456166 5:+74193345 MsG0580028073.01.T01:CDS
AATTTCGCCAGAGTCCCGTT+TGG 0.461902 5:-74193208 None:intergenic
GACCGATGCTGCTGATTCGC+GGG 0.463447 5:+74193182 MsG0580028073.01.T01:CDS
CCGGTGGTCAAGTATCTTCA+GGG 0.466032 5:+74193606 MsG0580028073.01.T01:CDS
CGGGGATCCAAACGGGACTC+TGG 0.468895 5:+74193201 MsG0580028073.01.T01:CDS
TGATTCGCGGGGATCCAAAC+GGG 0.468998 5:+74193194 MsG0580028073.01.T01:CDS
GAGAGGTATCCTGAAGTGTT+GGG 0.470423 5:+74193666 MsG0580028073.01.T01:CDS
CACTATTGATATGGAAGAGA+TGG 0.470517 5:+74194448 MsG0580028073.01.T01:CDS
GCCGAACATTAAACTCTTCG+AGG 0.470544 5:-74193944 None:intergenic
CTTTCCAGATACTCCACAAA+AGG 0.473709 5:-74193822 None:intergenic
GCTTCATTCTAGTGTGGTTG+TGG 0.477857 5:+74193575 MsG0580028073.01.T01:CDS
AAACCATAAGTGAAGAATGC+TGG 0.479920 5:-74194311 None:intergenic
CAATTGAGGAAGATGATTGT+TGG 0.489907 5:+74194188 MsG0580028073.01.T01:CDS
TGTGGAGTATCTGGAAAGCT+TGG 0.492486 5:+74193827 MsG0580028073.01.T01:CDS
CCCTCGAAGAGTTTAATGTT+CGG 0.492782 5:+74193943 MsG0580028073.01.T01:CDS
CTGATTCGCGGGGATCCAAA+CGG 0.493660 5:+74193193 MsG0580028073.01.T01:CDS
GTGTTGGGATTCAAACTTGA+GGG 0.498220 5:+74193681 MsG0580028073.01.T01:CDS
TATGCTTGATTTGGATTCTG+AGG 0.500905 5:+74194061 MsG0580028073.01.T01:CDS
ATCTGAAATTAAGAAAGATA+AGG 0.501088 5:+74193278 MsG0580028073.01.T01:CDS
GTTCCTGTGCTTGATTACCT+TGG 0.506625 5:+74193495 MsG0580028073.01.T01:CDS
TATTTGATTGGAATTGGTGT+TGG 0.509680 5:+74193726 MsG0580028073.01.T01:CDS
AAGGCCTTTCCATCTCACTT+TGG 0.511878 5:-74194268 None:intergenic
TGAGAGGTATCCTGAAGTGT+TGG 0.512556 5:+74193665 MsG0580028073.01.T01:CDS
TTAGTAACCATGTTATGCCT+AGG 0.513347 5:-74194350 None:intergenic
CCACGTTAACGCAGTTCTTG+CGG 0.514225 5:+74193538 MsG0580028073.01.T01:CDS
TGTTACGGTTGATGTTATGA+AGG 0.514841 5:+74193380 MsG0580028073.01.T01:CDS
TGGTCTTGAACTTCCTGTTA+CGG 0.514972 5:+74193365 MsG0580028073.01.T01:CDS
AATGTATTCATGTCAAATGA+TGG 0.519583 5:-74194479 None:intergenic
AGTCTAGCAATAGCTAGCCT+TGG 0.521140 5:-74193855 None:intergenic
TGTTTAAAGCAAGTAGTTGA+GGG 0.521469 5:-74194214 None:intergenic
AACCATAAGTGAAGAATGCT+GGG 0.524107 5:-74194310 None:intergenic
AATTTCAGATAAACTCGGAC+GGG 0.532219 5:-74193265 None:intergenic
CCCGCATCCCCAAAATCTCC+GGG 0.534445 5:-74193782 None:intergenic
ATCTTCCTAATACAATTACA+TGG 0.538869 5:-74193105 None:intergenic
GGACCGATGCTGCTGATTCG+CGG 0.542723 5:+74193181 MsG0580028073.01.T01:CDS
TGCAAGCTTTGGCTCTAGGT+CGG 0.543533 5:-74194015 None:intergenic
CGATTACTTCCAAAGTGAGA+TGG 0.549323 5:+74194259 MsG0580028073.01.T01:CDS
GGGACTCTGGCGAAATTCAA+AGG 0.550251 5:+74193214 MsG0580028073.01.T01:CDS
TTCTTAATTTCAGATAAACT+CGG 0.551846 5:-74193270 None:intergenic
ATGTTTAAAGCAAGTAGTTG+AGG 0.555715 5:-74194215 None:intergenic
TCCCCGCGAATCAGCAGCAT+CGG 0.556978 5:-74193184 None:intergenic
CCCTGAAGATACTTGACCAC+CGG 0.559238 5:-74193606 None:intergenic
AGGTCGGTTCCAATGATGCC+AGG 0.559721 5:-74193999 None:intergenic
AACAACTATCCTCTTGTACT+GGG 0.560648 5:+74193450 MsG0580028073.01.T01:CDS
CCGCAAGAACTGCGTTAACG+TGG 0.564848 5:-74193538 None:intergenic
TGGAAAGCTTGGTTATTCCA+AGG 0.571722 5:+74193838 MsG0580028073.01.T01:CDS
AGGATACTGAGCAATTATAG+AGG 0.572792 5:-74193979 None:intergenic
ACACTAGAATGAAGCACTTG+TGG 0.573884 5:-74193567 None:intergenic
AAATCAACGTGCTTCAGCAT+AGG 0.578326 5:-74194137 None:intergenic
AGAACACGAGGAATATCATC+CGG 0.579370 5:-74193642 None:intergenic
GGTCAAGTATCTTCAGGGGA+TGG 0.581823 5:+74193611 MsG0580028073.01.T01:CDS
TGTGGTTGTGGATCTTGTGC+CGG 0.581899 5:+74193587 MsG0580028073.01.T01:CDS
ACTTCCAAAGTGAGATGGAA+AGG 0.582725 5:+74194264 MsG0580028073.01.T01:CDS
ATATTCCTCGTGTTCTTGAG+AGG 0.588108 5:+74193649 MsG0580028073.01.T01:CDS
TGAGAAATTTGAGCAACGAA+TGG 0.590339 5:+74194418 MsG0580028073.01.T01:CDS
ACACTGCATCCCAGTACAAG+AGG 0.591183 5:-74193459 None:intergenic
TCAGGGGATGGATATCAAGC+CGG 0.594300 5:+74193623 MsG0580028073.01.T01:CDS
ATAAGCAACAGATGTACTCA+TGG 0.595928 5:-74193706 None:intergenic
TCCTAACTCCCAATTTACCA+AGG 0.597942 5:-74193512 None:intergenic
CCGAACATTAAACTCTTCGA+GGG 0.604717 5:-74193943 None:intergenic
AAATTCAAAGGAAACGAGGA+GGG 0.605538 5:+74193226 MsG0580028073.01.T01:CDS
TTCAATGTTCTGTTGCTGGT+AGG 0.612971 5:+74193145 MsG0580028073.01.T01:CDS
TTACCAAGGTAATCAAGCAC+AGG 0.615617 5:-74193498 None:intergenic
TAATTTCAGATAAACTCGGA+CGG 0.623058 5:-74193266 None:intergenic
ACAAGTGCTTCATTCTAGTG+TGG 0.623981 5:+74193569 MsG0580028073.01.T01:CDS
ATTGTTTATGAGTTCTTGCG+AGG 0.628501 5:+74193315 MsG0580028073.01.T01:CDS
TGGAGTCAACTATAAAACCT+AGG 0.628708 5:+74194333 MsG0580028073.01.T01:CDS
GAATACATTGATGCGACCAA+AGG 0.630639 5:+74194493 MsG0580028073.01.T01:CDS
AATTCAACCAAATCTTCCAA+AGG 0.636431 5:-74194287 None:intergenic
ACCGATGCTGCTGATTCGCG+GGG 0.642086 5:+74193183 MsG0580028073.01.T01:CDS
TATAAAACCTAGGCATAACA+TGG 0.645601 5:+74194343 MsG0580028073.01.T01:CDS
GGTGTTGGAAGAAGAGAACT+CGG 0.646346 5:+74193741 MsG0580028073.01.T01:CDS
AATCATTGAGAAGATGCCGC+AGG 0.648015 5:+74194094 MsG0580028073.01.T01:CDS
CGGTGGTCAAGTATCTTCAG+GGG 0.659657 5:+74193607 MsG0580028073.01.T01:CDS
AATTCAAAGGAAACGAGGAG+GGG 0.663481 5:+74193227 MsG0580028073.01.T01:CDS
AGTGTTGGGATTCAAACTTG+AGG 0.668806 5:+74193680 MsG0580028073.01.T01:CDS
GAAATTCAAAGGAAACGAGG+AGG 0.671690 5:+74193225 MsG0580028073.01.T01:CDS
GGTTGTGGATCTTGTGCCGG+TGG 0.671700 5:+74193590 MsG0580028073.01.T01:CDS
GGCGAAATTCAAAGGAAACG+AGG 0.686965 5:+74193222 MsG0580028073.01.T01:CDS
TCAGCATAGGTGTAGTACTG+AGG 0.702066 5:-74194124 None:intergenic
GTACTGAGGCTAACTACCTG+CGG 0.724109 5:-74194110 None:intergenic
GGATACCTCTCAAGAACACG+AGG 0.733931 5:-74193654 None:intergenic
GTTGGAAGAAGAGAACTCGG+AGG 0.795102 5:+74193744 MsG0580028073.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTCTTAATTTCAGATAAACT+CGG - Chr5:74193273-74193292 None:intergenic 20.0%
!!! ATCTGAAATTAAGAAAGATA+AGG + Chr5:74193278-74193297 MsG0580028073.01.T01:CDS 20.0%
!!! TTGATTTTTTTAAGGATTGT+GGG + Chr5:74194153-74194172 MsG0580028073.01.T01:CDS 20.0%
! AAAATGCCAATTCTAACATT+TGG + Chr5:74193042-74193061 MsG0580028073.01.T01:CDS 25.0%
! AAATCGAATCCAAGAATATA+AGG - Chr5:74193894-74193913 None:intergenic 25.0%
! AATGTATTCATGTCAAATGA+TGG - Chr5:74194482-74194501 None:intergenic 25.0%
! AATTGCCATGTAATTGTATT+AGG + Chr5:74193100-74193119 MsG0580028073.01.T01:CDS 25.0%
! ATCTTCCTAATACAATTACA+TGG - Chr5:74193108-74193127 None:intergenic 25.0%
! GTAATTGTATTAGGAAGATA+AGG + Chr5:74193109-74193128 MsG0580028073.01.T01:CDS 25.0%
! TTATATTCTTGGATTCGATT+TGG + Chr5:74193893-74193912 MsG0580028073.01.T01:CDS 25.0%
!! TTAGAATTGGCATTTTTGTT+TGG - Chr5:74193038-74193057 None:intergenic 25.0%
!! TTGATTTTCTTCATAGTTTG+GGG + Chr5:74193409-74193428 MsG0580028073.01.T01:CDS 25.0%
!!! GTTGATTTTCTTCATAGTTT+GGG + Chr5:74193408-74193427 MsG0580028073.01.T01:CDS 25.0%
!!! GTTGATTTTTTTAAGGATTG+TGG + Chr5:74194152-74194171 MsG0580028073.01.T01:CDS 25.0%
!!! TAGAATTGGCATTTTTGTTT+GGG - Chr5:74193037-74193056 None:intergenic 25.0%
!!! TGTTGATTTTCTTCATAGTT+TGG + Chr5:74193407-74193426 MsG0580028073.01.T01:CDS 25.0%
AATTCAACCAAATCTTCCAA+AGG - Chr5:74194290-74194309 None:intergenic 30.0%
CATAACATGGTTACTAAGAA+AGG + Chr5:74194356-74194375 MsG0580028073.01.T01:CDS 30.0%
CTTGATTACCTTGGTAAATT+GGG + Chr5:74193504-74193523 MsG0580028073.01.T01:CDS 30.0%
GAATGACCAAATGTTAGAAT+TGG - Chr5:74193051-74193070 None:intergenic 30.0%
GTTGCTTATTTGATTGGAAT+TGG + Chr5:74193720-74193739 MsG0580028073.01.T01:CDS 30.0%
TAATTTCAGATAAACTCGGA+CGG - Chr5:74193269-74193288 None:intergenic 30.0%
TATAAAACCTAGGCATAACA+TGG + Chr5:74194343-74194362 MsG0580028073.01.T01:CDS 30.0%
TATTTGATTGGAATTGGTGT+TGG + Chr5:74193726-74193745 MsG0580028073.01.T01:CDS 30.0%
! ACATCTGTTGCTTATTTGAT+TGG + Chr5:74193714-74193733 MsG0580028073.01.T01:CDS 30.0%
! ATGTTTAAAGCAAGTAGTTG+AGG - Chr5:74194218-74194237 None:intergenic 30.0%
! TGTTTAAAGCAAGTAGTTGA+GGG - Chr5:74194217-74194236 None:intergenic 30.0%
!! GCATTTTTGTTTGGGAAAAT+GGG - Chr5:74193029-74193048 None:intergenic 30.0%
!!! GAAGCACGTTGATTTTTTTA+AGG + Chr5:74194145-74194164 MsG0580028073.01.T01:CDS 30.0%
AAACCATAAGTGAAGAATGC+TGG - Chr5:74194314-74194333 None:intergenic 35.0%
AAATTCAAAGGAAACGAGGA+GGG + Chr5:74193226-74193245 MsG0580028073.01.T01:CDS 35.0%
AACAACTATCCTCTTGTACT+GGG + Chr5:74193450-74193469 MsG0580028073.01.T01:CDS 35.0%
AACCATAAGTGAAGAATGCT+GGG - Chr5:74194313-74194332 None:intergenic 35.0%
AATTTCAGATAAACTCGGAC+GGG - Chr5:74193268-74193287 None:intergenic 35.0%
AGCATTCTTCACTTATGGTT+TGG + Chr5:74194313-74194332 MsG0580028073.01.T01:CDS 35.0%
AGGATACTGAGCAATTATAG+AGG - Chr5:74193982-74194001 None:intergenic 35.0%
AGGTATCTTAACTAGATTCC+CGG + Chr5:74193764-74193783 MsG0580028073.01.T01:CDS 35.0%
ATAAGCAACAGATGTACTCA+TGG - Chr5:74193709-74193728 None:intergenic 35.0%
ATGCAGTGTCAAGAAGAATA+TGG + Chr5:74193473-74193492 MsG0580028073.01.T01:CDS 35.0%
ATTGTTCCTGATGAACTTGA+TGG + Chr5:74193345-74193364 MsG0580028073.01.T01:CDS 35.0%
ATTGTTTATGAGTTCTTGCG+AGG + Chr5:74193315-74193334 MsG0580028073.01.T01:CDS 35.0%
CAATTGAGGAAGATGATTGT+TGG + Chr5:74194188-74194207 MsG0580028073.01.T01:CDS 35.0%
CACTATTGATATGGAAGAGA+TGG + Chr5:74194448-74194467 MsG0580028073.01.T01:CDS 35.0%
GAGACACAACCTTATATTCT+TGG + Chr5:74193882-74193901 MsG0580028073.01.T01:CDS 35.0%
GCTCAATTCTATGCTTGATT+TGG + Chr5:74194052-74194071 MsG0580028073.01.T01:CDS 35.0%
GCTTGATTACCTTGGTAAAT+TGG + Chr5:74193503-74193522 MsG0580028073.01.T01:CDS 35.0%
GGACTATGACACTATTGATA+TGG + Chr5:74194439-74194458 MsG0580028073.01.T01:CDS 35.0%
GTTTGGGAAAATGGGAAATT+CGG - Chr5:74193021-74193040 None:intergenic 35.0%
TAACAACTATCCTCTTGTAC+TGG + Chr5:74193449-74193468 MsG0580028073.01.T01:CDS 35.0%
TCTATAATTGCTCAGTATCC+TGG + Chr5:74193981-74194000 MsG0580028073.01.T01:CDS 35.0%
TGAGAAATTTGAGCAACGAA+TGG + Chr5:74194418-74194437 MsG0580028073.01.T01:CDS 35.0%
TGATATGGAAGAGATGGAAA+TGG + Chr5:74194454-74194473 MsG0580028073.01.T01:CDS 35.0%
TGGAGTCAACTATAAAACCT+AGG + Chr5:74194333-74194352 MsG0580028073.01.T01:CDS 35.0%
TTAGTAACCATGTTATGCCT+AGG - Chr5:74194353-74194372 None:intergenic 35.0%
TTCATAACATCAACCGTAAC+AGG - Chr5:74193381-74193400 None:intergenic 35.0%
! GAAAGGATTAAAGTGTTCTC+TGG + Chr5:74194373-74194392 MsG0580028073.01.T01:CDS 35.0%
! GATTTGGATTCTGAGGATTT+CGG + Chr5:74194068-74194087 MsG0580028073.01.T01:CDS 35.0%
! TGTTACGGTTGATGTTATGA+AGG + Chr5:74193380-74193399 MsG0580028073.01.T01:CDS 35.0%
!! GGCATTTTTGTTTGGGAAAA+TGG - Chr5:74193030-74193049 None:intergenic 35.0%
!! TATGCTTGATTTGGATTCTG+AGG + Chr5:74194061-74194080 MsG0580028073.01.T01:CDS 35.0%
!!! TGGGAAATTCGGTTTTGTTA+TGG - Chr5:74193010-74193029 None:intergenic 35.0%
AAATCAACGTGCTTCAGCAT+AGG - Chr5:74194140-74194159 None:intergenic 40.0%
AAGCTTCAATGTTCTGTTGC+TGG + Chr5:74193141-74193160 MsG0580028073.01.T01:CDS 40.0%
AATTCAAAGGAAACGAGGAG+GGG + Chr5:74193227-74193246 MsG0580028073.01.T01:CDS 40.0%
ACAAGTGCTTCATTCTAGTG+TGG + Chr5:74193569-74193588 MsG0580028073.01.T01:CDS 40.0%
ACCTTGGTAAATTGGGAGTT+AGG + Chr5:74193511-74193530 MsG0580028073.01.T01:CDS 40.0%
ACTTCCAAAGTGAGATGGAA+AGG + Chr5:74194264-74194283 MsG0580028073.01.T01:CDS 40.0%
AGAACACGAGGAATATCATC+CGG - Chr5:74193645-74193664 None:intergenic 40.0%
AGTTTGAATCCCAACACTTC+AGG - Chr5:74193678-74193697 None:intergenic 40.0%
ATATTCCTCGTGTTCTTGAG+AGG + Chr5:74193649-74193668 MsG0580028073.01.T01:CDS 40.0%
CCCTCGAAGAGTTTAATGTT+CGG + Chr5:74193943-74193962 MsG0580028073.01.T01:CDS 40.0%
CCGAACATTAAACTCTTCGA+GGG - Chr5:74193946-74193965 None:intergenic 40.0%
CGATTACTTCCAAAGTGAGA+TGG + Chr5:74194259-74194278 MsG0580028073.01.T01:CDS 40.0%
CTGGTAGGACGTATAGTTAT+AGG + Chr5:74193160-74193179 MsG0580028073.01.T01:CDS 40.0%
CTTCTCTTATCTGCAAGCTT+TGG - Chr5:74194029-74194048 None:intergenic 40.0%
CTTTCCAGATACTCCACAAA+AGG - Chr5:74193825-74193844 None:intergenic 40.0%
GAAATTCAAAGGAAACGAGG+AGG + Chr5:74193225-74193244 MsG0580028073.01.T01:CDS 40.0%
GAATACATTGATGCGACCAA+AGG + Chr5:74194493-74194512 MsG0580028073.01.T01:CDS 40.0%
GTGTTGGGATTCAAACTTGA+GGG + Chr5:74193681-74193700 MsG0580028073.01.T01:CDS 40.0%
TATGAGTTCTTGCGAGGAAT+CGG + Chr5:74193321-74193340 MsG0580028073.01.T01:CDS 40.0%
TCAAGACCATCAAGTTCATC+AGG - Chr5:74193354-74193373 None:intergenic 40.0%
TCCTAACTCCCAATTTACCA+AGG - Chr5:74193515-74193534 None:intergenic 40.0%
TGGAAAGCTTGGTTATTCCA+AGG + Chr5:74193838-74193857 MsG0580028073.01.T01:CDS 40.0%
TTACCAAGGTAATCAAGCAC+AGG - Chr5:74193501-74193520 None:intergenic 40.0%
TTCAATGTTCTGTTGCTGGT+AGG + Chr5:74193145-74193164 MsG0580028073.01.T01:CDS 40.0%
TTCCCAGCATTCTTCACTTA+TGG + Chr5:74194308-74194327 MsG0580028073.01.T01:CDS 40.0%
! AACTAGATTCCCGGAGATTT+TGG + Chr5:74193773-74193792 MsG0580028073.01.T01:CDS 40.0%
! ACACTAGAATGAAGCACTTG+TGG - Chr5:74193570-74193589 None:intergenic 40.0%
! ACTAGATTCCCGGAGATTTT+GGG + Chr5:74193774-74193793 MsG0580028073.01.T01:CDS 40.0%
! AGTGTTGGGATTCAAACTTG+AGG + Chr5:74193680-74193699 MsG0580028073.01.T01:CDS 40.0%
! GATTAAAGTGTTCTCTGGCT+TGG + Chr5:74194378-74194397 MsG0580028073.01.T01:CDS 40.0%
! GGTTTTCTGTGGATCAATTG+AGG + Chr5:74194174-74194193 MsG0580028073.01.T01:CDS 40.0%
! TAAGGATTGTGGGTTTTCTG+TGG + Chr5:74194163-74194182 MsG0580028073.01.T01:CDS 40.0%
! TAGAGTCATCAAGCCTTTTG+TGG + Chr5:74193809-74193828 MsG0580028073.01.T01:CDS 40.0%
! TGGTCTTGAACTTCCTGTTA+CGG + Chr5:74193365-74193384 MsG0580028073.01.T01:CDS 40.0%
AAGGCCTTTCCATCTCACTT+TGG - Chr5:74194271-74194290 None:intergenic 45.0%
AAGTGAGATGGAAAGGCCTT+TGG + Chr5:74194271-74194290 MsG0580028073.01.T01:CDS 45.0%
AATCATTGAGAAGATGCCGC+AGG + Chr5:74194094-74194113 MsG0580028073.01.T01:CDS 45.0%
GCCGAACATTAAACTCTTCG+AGG - Chr5:74193947-74193966 None:intergenic 45.0%
GCTTCATTCTAGTGTGGTTG+TGG + Chr5:74193575-74193594 MsG0580028073.01.T01:CDS 45.0%
GGCGAAATTCAAAGGAAACG+AGG + Chr5:74193222-74193241 MsG0580028073.01.T01:CDS 45.0%
GTTCCTGTGCTTGATTACCT+TGG + Chr5:74193495-74193514 MsG0580028073.01.T01:CDS 45.0%
TCAGCATAGGTGTAGTACTG+AGG - Chr5:74194127-74194146 None:intergenic 45.0%
TCTTCGAGGGATTTGACGTT+TGG - Chr5:74193933-74193952 None:intergenic 45.0%
! AGTCTAGCAATAGCTAGCCT+TGG - Chr5:74193858-74193877 None:intergenic 45.0%
! CTAGATTCCCGGAGATTTTG+GGG + Chr5:74193775-74193794 MsG0580028073.01.T01:CDS 45.0%
! GGAAAGGCCTTTGGAAGATT+TGG + Chr5:74194280-74194299 MsG0580028073.01.T01:CDS 45.0%
! GGTGTTGGAAGAAGAGAACT+CGG + Chr5:74193741-74193760 MsG0580028073.01.T01:CDS 45.0%
! TGTGGAGTATCTGGAAAGCT+TGG + Chr5:74193827-74193846 MsG0580028073.01.T01:CDS 45.0%
!! CAAGCCTTTTGTGGAGTATC+TGG + Chr5:74193818-74193837 MsG0580028073.01.T01:CDS 45.0%
!! GAGAGGTATCCTGAAGTGTT+GGG + Chr5:74193666-74193685 MsG0580028073.01.T01:CDS 45.0%
!! TATCTGCAAGCTTTGGCTCT+AGG - Chr5:74194022-74194041 None:intergenic 45.0%
!! TGAGAGGTATCCTGAAGTGT+TGG + Chr5:74193665-74193684 MsG0580028073.01.T01:CDS 45.0%
AATTTCGCCAGAGTCCCGTT+TGG - Chr5:74193211-74193230 None:intergenic 50.0%
ACACTGCATCCCAGTACAAG+AGG - Chr5:74193462-74193481 None:intergenic 50.0%
CCACGTTAACGCAGTTCTTG+CGG + Chr5:74193538-74193557 MsG0580028073.01.T01:CDS 50.0%
CCCTGAAGATACTTGACCAC+CGG - Chr5:74193609-74193628 None:intergenic 50.0%
CCGGTGGTCAAGTATCTTCA+GGG + Chr5:74193606-74193625 MsG0580028073.01.T01:CDS 50.0%
CGGTGGTCAAGTATCTTCAG+GGG + Chr5:74193607-74193626 MsG0580028073.01.T01:CDS 50.0%
GCTCAGTATCCTGGCATCAT+TGG + Chr5:74193990-74194009 MsG0580028073.01.T01:CDS 50.0%
GGATACCTCTCAAGAACACG+AGG - Chr5:74193657-74193676 None:intergenic 50.0%
GGGACTCTGGCGAAATTCAA+AGG + Chr5:74193214-74193233 MsG0580028073.01.T01:CDS 50.0%
GGTCAAGTATCTTCAGGGGA+TGG + Chr5:74193611-74193630 MsG0580028073.01.T01:CDS 50.0%
GTACTGAGGCTAACTACCTG+CGG - Chr5:74194113-74194132 None:intergenic 50.0%
GTTGGAAGAAGAGAACTCGG+AGG + Chr5:74193744-74193763 MsG0580028073.01.T01:CDS 50.0%
TCAGGGGATGGATATCAAGC+CGG + Chr5:74193623-74193642 MsG0580028073.01.T01:CDS 50.0%
TGTGGTTGTGGATCTTGTGC+CGG + Chr5:74193587-74193606 MsG0580028073.01.T01:CDS 50.0%
!! TGCAAGCTTTGGCTCTAGGT+CGG - Chr5:74194018-74194037 None:intergenic 50.0%
ACCCGCATCCCCAAAATCTC+CGG - Chr5:74193786-74193805 None:intergenic 55.0%
CCGCAAGAACTGCGTTAACG+TGG - Chr5:74193541-74193560 None:intergenic 55.0%
GCCGGTGGTCAAGTATCTTC+AGG + Chr5:74193605-74193624 MsG0580028073.01.T01:CDS 55.0%
TGATTCGCGGGGATCCAAAC+GGG + Chr5:74193194-74193213 MsG0580028073.01.T01:CDS 55.0%
! AGGTCGGTTCCAATGATGCC+AGG - Chr5:74194002-74194021 None:intergenic 55.0%
! CTGATTCGCGGGGATCCAAA+CGG + Chr5:74193193-74193212 MsG0580028073.01.T01:CDS 55.0%
!! GAGATTTTGGGGATGCGGGT+TGG + Chr5:74193786-74193805 MsG0580028073.01.T01:CDS 55.0%
!! TCCCGGAGATTTTGGGGATG+CGG + Chr5:74193781-74193800 MsG0580028073.01.T01:CDS 55.0%
CCCGCATCCCCAAAATCTCC+GGG - Chr5:74193785-74193804 None:intergenic 60.0%
GGTTGTGGATCTTGTGCCGG+TGG + Chr5:74193590-74193609 MsG0580028073.01.T01:CDS 60.0%
TCCCCGCGAATCAGCAGCAT+CGG - Chr5:74193187-74193206 None:intergenic 60.0%
!! ACCGATGCTGCTGATTCGCG+GGG + Chr5:74193183-74193202 MsG0580028073.01.T01:CDS 60.0%
!! CCCGGAGATTTTGGGGATGC+GGG + Chr5:74193782-74193801 MsG0580028073.01.T01:CDS 60.0%
!! GACCGATGCTGCTGATTCGC+GGG + Chr5:74193182-74193201 MsG0580028073.01.T01:CDS 60.0%
!! GGACCGATGCTGCTGATTCG+CGG + Chr5:74193181-74193200 MsG0580028073.01.T01:CDS 60.0%
CGGGGATCCAAACGGGACTC+TGG + Chr5:74193201-74193220 MsG0580028073.01.T01:CDS 65.0%
Chromosome Type Strat End Strand Name
Chr5 gene 74192991 74194523 74192991 ID=MsG0580028073.01;Name=MsG0580028073.01
Chr5 mRNA 74192991 74194523 74192991 ID=MsG0580028073.01.T01;Parent=MsG0580028073.01;Name=MsG0580028073.01.T01;_AED=0.47;_eAED=0.47;_QI=0|-1|0|1|-1|1|1|0|510
Chr5 exon 74192991 74194523 74192991 ID=MsG0580028073.01.T01:exon:45599;Parent=MsG0580028073.01.T01
Chr5 CDS 74192991 74194523 74192991 ID=MsG0580028073.01.T01:cds;Parent=MsG0580028073.01.T01
Gene Sequence

>MsG0580028073.01.T01

ATGAACTTTTCTGGCACCATAACAAAACCGAATTTCCCATTTTCCCAAACAAAAATGCCAATTCTAACATTTGGTCATTCTAAGTTAACTGCTGCTACACTAGCTCTTCAATTGCCATGTAATTGTATTAGGAAGATAAGGTTTATTACAAAGCTTCAATGTTCTGTTGCTGGTAGGACGTATAGTTATAGGACCGATGCTGCTGATTCGCGGGGATCCAAACGGGACTCTGGCGAAATTCAAAGGAAACGAGGAGGGGCATCATCGTTGTATGCCCGTCCGAGTTTATCTGAAATTAAGAAAGATAAGGCGACATTGCGTGAAATTGTTTATGAGTTCTTGCGAGGAATCGGCATTGTTCCTGATGAACTTGATGGTCTTGAACTTCCTGTTACGGTTGATGTTATGAAGGAGCGTGTTGATTTTCTTCATAGTTTGGGGCTTACGATTGAAGACATTAACAACTATCCTCTTGTACTGGGATGCAGTGTCAAGAAGAATATGGTTCCTGTGCTTGATTACCTTGGTAAATTGGGAGTTAGGAAATCCACGTTAACGCAGTTCTTGCGGAGATATCCACAAGTGCTTCATTCTAGTGTGGTTGTGGATCTTGTGCCGGTGGTCAAGTATCTTCAGGGGATGGATATCAAGCCGGATGATATTCCTCGTGTTCTTGAGAGGTATCCTGAAGTGTTGGGATTCAAACTTGAGGGAACCATGAGTACATCTGTTGCTTATTTGATTGGAATTGGTGTTGGAAGAAGAGAACTCGGAGGTATCTTAACTAGATTCCCGGAGATTTTGGGGATGCGGGTTGGTAGAGTCATCAAGCCTTTTGTGGAGTATCTGGAAAGCTTGGTTATTCCAAGGCTAGCTATTGCTAGACTGATAGAGACACAACCTTATATTCTTGGATTCGATTTGGACGACAAAGTGAAGCCAAACGTCAAATCCCTCGAAGAGTTTAATGTTCGGCAGACATCGCATGCCTCTATAATTGCTCAGTATCCTGGCATCATTGGAACCGACCTAGAGCCAAAGCTTGCAGATAAGAGAAGTGTGCTCAATTCTATGCTTGATTTGGATTCTGAGGATTTCGGCTTAATCATTGAGAAGATGCCGCAGGTAGTTAGCCTCAGTACTACACCTATGCTGAAGCACGTTGATTTTTTTAAGGATTGTGGGTTTTCTGTGGATCAATTGAGGAAGATGATTGTTGGATGCCCTCAACTACTTGCTTTAAACATTGATATCATGAAACTTAGCTTCGATTACTTCCAAAGTGAGATGGAAAGGCCTTTGGAAGATTTGGTTGAATTCCCAGCATTCTTCACTTATGGTTTGGAGTCAACTATAAAACCTAGGCATAACATGGTTACTAAGAAAGGATTAAAGTGTTCTCTGGCTTGGATGCTTAACTGTTCTGATGAGAAATTTGAGCAACGAATGGACTATGACACTATTGATATGGAAGAGATGGAAATGGAACCATCATTTGACATGAATACATTGATGCGACCAAAGGAGCGATGA

Protein sequence

>MsG0580028073.01.T01

MNFSGTITKPNFPFSQTKMPILTFGHSKLTAATLALQLPCNCIRKIRFITKLQCSVAGRTYSYRTDAADSRGSKRDSGEIQRKRGGASSLYARPSLSEIKKDKATLREIVYEFLRGIGIVPDELDGLELPVTVDVMKERVDFLHSLGLTIEDINNYPLVLGCSVKKNMVPVLDYLGKLGVRKSTLTQFLRRYPQVLHSSVVVDLVPVVKYLQGMDIKPDDIPRVLERYPEVLGFKLEGTMSTSVAYLIGIGVGRRELGGILTRFPEILGMRVGRVIKPFVEYLESLVIPRLAIARLIETQPYILGFDLDDKVKPNVKSLEEFNVRQTSHASIIAQYPGIIGTDLEPKLADKRSVLNSMLDLDSEDFGLIIEKMPQVVSLSTTPMLKHVDFFKDCGFSVDQLRKMIVGCPQLLALNIDIMKLSFDYFQSEMERPLEDLVEFPAFFTYGLESTIKPRHNMVTKKGLKCSLAWMLNCSDEKFEQRMDYDTIDMEEMEMEPSFDMNTLMRPKER*