AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1368260

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1368260 MtrunA17_Chr4g0016151 100.000 82 0 0 199 280 1 82 7.40e-55 172
Msa1368260 MtrunA17_CPg0492351 100.000 82 0 0 199 280 1 82 7.40e-55 172
Msa1368260 MtrunA17_Chr7g0229411 98.780 82 1 0 199 280 1 82 3.39e-54 170
Msa1368260 MtrunA17_Chr4g0000631 98.780 82 1 0 199 280 1 82 3.50e-54 170
Msa1368260 MtrunA17_Chr5g0435911 97.561 82 2 0 199 280 1 82 1.38e-52 166
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score

Find 122 sgRNAs with CRISPR-Local

Find 458 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCGTTCATGGTTCGATATTC+TGG 0.185586 tig0018631:+10341 None:intergenic
TGCACGCCTCCGTTACCTTT+TGG 0.196515 tig0018631:-9400 Msa1368260:CDS
CAGCTCACGTACCGCTTTAA+TGG 0.245260 tig0018631:-9695 Msa1368260:CDS
TCATGCCTTTACTTCGTTCA+TGG 0.272664 tig0018631:+10328 None:intergenic
GGCTGTGATACCGGAGGCTC+TGG 0.279951 tig0018631:-9941 Msa1368260:CDS
TCTCAGGTAGACAGTTTCTA+TGG 0.287253 tig0018631:+9365 None:intergenic
GCACGAAAGGCGTAACGATC+TGG 0.311741 tig0018631:+9101 None:intergenic
TCTAACGCCCACACCGGATA+TGG 0.325084 tig0018631:-9746 Msa1368260:CDS
CAGAGAACCCATCGCTGTTT+CGG 0.333458 tig0018631:-9962 Msa1368260:CDS
TCCTCGGGCCAGACGGAGAT+TGG 0.349112 tig0018631:+9429 None:intergenic
TCCCGTCGATGTGAGCTCTT+GGG 0.355274 tig0018631:-9601 Msa1368260:CDS
CACCAACTTCCTTAACCTTC+CGG 0.362818 tig0018631:-8976 Msa1368260:CDS
TTCACCGGGGCTTCGGTCGC+CGG 0.371598 tig0018631:-9016 Msa1368260:CDS
CAAAGTCGTAAGACCATGTA+TGG 0.380055 tig0018631:+8933 None:intergenic
AAAGTTACTCTAGGGATAAC+AGG 0.383241 tig0018631:+9569 None:intergenic
CATTAAAGCGGTACGTGAGC+TGG 0.384796 tig0018631:+9696 None:intergenic
TTCCCGTCGATGTGAGCTCT+TGG 0.386490 tig0018631:-9602 Msa1368260:CDS
AGCTCACGTACCGCTTTAAT+GGG 0.395506 tig0018631:-9694 Msa1368260:CDS
GCCGCCGTTCACCGGGGCTT+CGG 0.397671 tig0018631:-9023 Msa1368260:CDS
CGCTGTTTCGGCTGTGATAC+CGG 0.403155 tig0018631:-9950 Msa1368260:CDS
AATAGGAGAGCACTCATCTT+GGG 0.408942 tig0018631:-9909 Msa1368260:CDS
TGCCCAGTGCCGGAAGGTTA+AGG 0.409134 tig0018631:+8967 None:intergenic
CCCTTCTGCCTTTGCACTCG+AGG 0.411231 tig0018631:-9453 Msa1368260:CDS
CTCACATCGACGGGAAGGTT+TGG 0.420533 tig0018631:+9609 None:intergenic
CTTCCTTAACCTTCCGGCAC+TGG 0.422146 tig0018631:-8970 Msa1368260:CDS
TGTAGTATGTTCCAAGGGTT+GGG 0.424624 tig0018631:+9664 None:intergenic
TAGTTACGGCCGCCGTTCAC+CGG 0.432611 tig0018631:-9031 Msa1368260:CDS
GGCTGACGCCTGCCCAGTGC+CGG 0.435469 tig0018631:+8957 None:intergenic
TTAACCTTCCGGCACTGGGC+AGG 0.436659 tig0018631:-8965 Msa1368260:CDS
AGTTACGGCCGCCGTTCACC+GGG 0.437053 tig0018631:-9030 Msa1368260:CDS
AGTTGAACAATCAAAATAGA+TGG 0.442588 tig0018631:-10171 Msa1368260:CDS
CCACCAAGTTCGGGATGGAT+TGG 0.447763 tig0018631:-10388 None:intergenic
CTGTAGTATGTTCCAAGGGT+TGG 0.452990 tig0018631:+9663 None:intergenic
TCGCCGGCTTCCCTGTCATC+AGG 0.453580 tig0018631:-9000 Msa1368260:CDS
GAGACAGTTCGGTCCATATC+CGG 0.455659 tig0018631:+9733 None:intergenic
ACAGACCAAGGGACAGTCTC+AGG 0.456050 tig0018631:+9349 None:intergenic
CAGAACGTCGTGAGACAGTT+CGG 0.457061 tig0018631:+9722 None:intergenic
GAAGCCGGCGACCGAAGCCC+CGG 0.461073 tig0018631:+9012 None:intergenic
CCTTCTGCCTTTGCACTCGA+GGG 0.461384 tig0018631:-9452 Msa1368260:CDS
GACTGTCCCTTGGTCTGTAC+TGG 0.464231 tig0018631:-9344 Msa1368260:CDS
CCCCAAGAGCTCACATCGAC+GGG 0.472021 tig0018631:+9600 None:intergenic
TACATGGTCTTACGACTTTG+CGG 0.476001 tig0018631:-8930 Msa1368260:CDS
GTTCGATATTCTGGTGTCCT+AGG 0.478291 tig0018631:+10350 None:intergenic
TCCGACTTCCCCAGAGCCTC+CGG 0.480691 tig0018631:+9931 None:intergenic
CTCGAGGGCCAATCTCCGTC+TGG 0.480699 tig0018631:-9437 Msa1368260:CDS
TGCCGGAAGGTTAAGGAAGT+TGG 0.485164 tig0018631:+8974 None:intergenic
GAATAGGAGAGCACTCATCT+TGG 0.487596 tig0018631:-9910 Msa1368260:CDS
ACAAGGAATTTCGCTACCTT+AGG 0.488888 tig0018631:-9061 Msa1368260:CDS
GGCTCTGGGGAAGTCGGAAT+AGG 0.491163 tig0018631:-9926 Msa1368260:CDS
CACGAAAGGCGTAACGATCT+GGG 0.491297 tig0018631:+9102 None:intergenic
GAAGTTGGTGACCTGATGAC+AGG 0.495416 tig0018631:+8989 None:intergenic
AGGTAGCGAAATTCCTTGTC+GGG 0.495901 tig0018631:+9065 None:intergenic
ATTGCCTGATCGAATTGATC+AGG 0.499380 tig0018631:-10146 Msa1368260:intron
TTCCTTAACCTTCCGGCACT+GGG 0.504342 tig0018631:-8969 Msa1368260:CDS
GCGACCGAAGCCCCGGTGAA+CGG 0.505900 tig0018631:+9019 None:intergenic
CACTGTCTCGGAGAGAGGCT+CGG 0.506062 tig0018631:+9125 None:intergenic
GATGTCGGCTCTTCGCCACC+TGG 0.508239 tig0018631:+9638 None:intergenic
GCTGTGATACCGGAGGCTCT+GGG 0.508804 tig0018631:-9940 Msa1368260:CDS
CTCAGGTAGACAGTTTCTAT+GGG 0.510655 tig0018631:+9366 None:intergenic
CCCTCGAGTGCAAAGGCAGA+AGG 0.511073 tig0018631:+9452 None:intergenic
AAGGTAGCGAAATTCCTTGT+CGG 0.511527 tig0018631:+9064 None:intergenic
TAACGATCTGGGCACTGTCT+CGG 0.513539 tig0018631:+9113 None:intergenic
ATGACCTGATCAATTCGATC+AGG 0.514268 tig0018631:+10142 None:intergenic
GATCGTTACGCCTTTCGTGC+GGG 0.516913 tig0018631:-9098 Msa1368260:CDS
TGACCTGATGACAGGGAAGC+CGG 0.518242 tig0018631:+8997 None:intergenic
CCTTAGGACCGTTATAGTTA+CGG 0.519214 tig0018631:-9045 Msa1368260:CDS
GAGGCGTGCAAAGGTTTCCT+CGG 0.526013 tig0018631:+9413 None:intergenic
AGGCGTGCAAAGGTTTCCTC+GGG 0.527025 tig0018631:+9414 None:intergenic
CCCGTCGATGTGAGCTCTTG+GGG 0.534121 tig0018631:-9600 Msa1368260:CDS
CCTTGGTCTGTACTGGCACA+AGG 0.538614 tig0018631:-9337 Msa1368260:intron
ATTAAAGCGGTACGTGAGCT+GGG 0.539036 tig0018631:+9697 None:intergenic
CTGGGCACTGTCTCGGAGAG+AGG 0.542198 tig0018631:+9120 None:intergenic
AAGGTTTGGCACCTCGATGT+CGG 0.545826 tig0018631:+9623 None:intergenic
TGGGCGAACAGCCCAACCCT+TGG 0.548090 tig0018631:-9675 Msa1368260:CDS
TCCCCAAGAGCTCACATCGA+CGG 0.555494 tig0018631:+9599 None:intergenic
AAAGTCGTAAGACCATGTAT+GGG 0.556989 tig0018631:+8934 None:intergenic
GCCAATCTCCGTCTGGCCCG+AGG 0.562208 tig0018631:-9430 Msa1368260:CDS
TGGAGCTGTAGTATGTTCCA+AGG 0.564153 tig0018631:+9658 None:intergenic
ACCGAAGCCCCGGTGAACGG+CGG 0.564471 tig0018631:+9022 None:intergenic
AGATCGTTACGCCTTTCGTG+CGG 0.565799 tig0018631:-9099 Msa1368260:CDS
ACCGGAGGCTCTGGGGAAGT+CGG 0.567230 tig0018631:-9932 Msa1368260:CDS
GACGCCTGCCCAGTGCCGGA+AGG 0.568365 tig0018631:+8961 None:intergenic
TATCACAGCCGAAACAGCGA+TGG 0.574058 tig0018631:+9954 None:intergenic
CCGTAACTATAACGGTCCTA+AGG 0.574485 tig0018631:+9045 None:intergenic
TTGGAACATACTACAGCTCC+AGG 0.579135 tig0018631:-9656 Msa1368260:CDS
TAAGTTCCGACCCGCACGAA+AGG 0.581321 tig0018631:+9088 None:intergenic
GTCTACCTGAGACTGTCCCT+TGG 0.586612 tig0018631:-9354 Msa1368260:CDS
AAGGTAACGGAGGCGTGCAA+AGG 0.595805 tig0018631:+9404 None:intergenic
CCTCGAGTGCAAAGGCAGAA+GGG 0.595841 tig0018631:+9453 None:intergenic
AAAGGTTTCCTCGGGCCAGA+CGG 0.597813 tig0018631:+9422 None:intergenic
CTGTGATACCGGAGGCTCTG+GGG 0.598997 tig0018631:-9939 Msa1368260:CDS
AACGGCGGCCGTAACTATAA+CGG 0.599287 tig0018631:+9037 None:intergenic
GTTACGCCTTTCGTGCGGGT+CGG 0.605304 tig0018631:-9094 Msa1368260:CDS
GGTGTGGTTCCTCTACGCCT+AGG 0.606362 tig0018631:-10367 Msa1368260:CDS
TGGGGCGTAGGCCTCCCAAA+AGG 0.606913 tig0018631:+9385 None:intergenic
GTTCGGTCCATATCCGGTGT+GGG 0.608178 tig0018631:+9739 None:intergenic
AAGAGCTCACATCGACGGGA+AGG 0.613365 tig0018631:+9604 None:intergenic
AGTTCGGTCCATATCCGGTG+TGG 0.618273 tig0018631:+9738 None:intergenic
GGGCTGTTCGCCCATTAAAG+CGG 0.619701 tig0018631:+9684 None:intergenic
ATCACAGCCGAAACAGCGAT+GGG 0.621115 tig0018631:+9955 None:intergenic
AAGTCGTAAGACCATGTATG+GGG 0.621859 tig0018631:+8935 None:intergenic
TTCTGGTGTCCTAGGCGTAG+AGG 0.622900 tig0018631:+10358 None:intergenic
AGACAGTTTCTATGGGGCGT+AGG 0.622986 tig0018631:+9373 None:intergenic
ATAGGAGAGCACTCATCTTG+GGG 0.623240 tig0018631:-9908 Msa1368260:intron
AAGTTGGTGACCTGATGACA+GGG 0.627282 tig0018631:+8990 None:intergenic
GTAGGCCTCCCAAAAGGTAA+CGG 0.632223 tig0018631:+9391 None:intergenic
AAGTTCGGGATGGATTGGTG+TGG 0.636372 tig0018631:-10383 None:intergenic
GGAGCTGTAGTATGTTCCAA+GGG 0.640199 tig0018631:+9659 None:intergenic
TAGACATGTCTGTGAAGATG+CGG 0.645281 tig0018631:+9153 None:intergenic
CCTTGTGCCAGTACAGACCA+AGG 0.645647 tig0018631:+9337 None:intergenic
GGGTCGGAACTTACCCGACA+AGG 0.655880 tig0018631:-9078 Msa1368260:CDS
CAATGCTCTAACGCCCACAC+CGG 0.666176 tig0018631:-9752 Msa1368260:CDS
AGATTGGCCCTCGAGTGCAA+AGG 0.670375 tig0018631:+9445 None:intergenic
GGCCTCCCAAAAGGTAACGG+AGG 0.683463 tig0018631:+9394 None:intergenic
AGTCGTAAGACCATGTATGG+GGG 0.686647 tig0018631:+8936 None:intergenic
CTTGTGCCAGTACAGACCAA+GGG 0.693537 tig0018631:+9338 None:intergenic
GTGGGCGTTAGAGCATTGAG+AGG 0.697492 tig0018631:+9757 None:intergenic
GTGGCGAAGAGCCGACATCG+AGG 0.704477 tig0018631:-9634 Msa1368260:CDS
TGTTTCGGCTGTGATACCGG+AGG 0.717886 tig0018631:-9947 Msa1368260:CDS
TCAGGTAGACAGTTTCTATG+GGG 0.720720 tig0018631:+9367 None:intergenic
GTTACGGCCGCCGTTCACCG+GGG 0.732311 tig0018631:-9029 Msa1368260:CDS
GAACATACTACAGCTCCAGG+TGG 0.771466 tig0018631:-9653 Msa1368260:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
! AGTTGAACAATCAAAATAGA+TGG - tig0018631:9114-9133 Msa1368260:CDS 25.0%
! AGTTGAACAATCAAAATAGA+TGG - tig0018631:9114-9133 Msa1368260:CDS 25.0%
CACCTATCGTTAATGAAAAA+CGG - tig0018631:9238-9257 Msa1368260:intron 30.0%
!!! AGTTTTGAGAATTCAAGAGA+AGG + tig0018631:9279-9298 None:intergenic 30.0%
AACGGATAAAAGTTACTCTA+GGG + tig0018631:9727-9746 None:intergenic 30.0%
CACCTATCGTTAATGAAAAA+CGG - tig0018631:9238-9257 Msa1368260:intron 30.0%
!!! AGTTTTGAGAATTCAAGAGA+AGG + tig0018631:9279-9298 None:intergenic 30.0%
AACGGATAAAAGTTACTCTA+GGG + tig0018631:9727-9746 None:intergenic 30.0%
! CATATTGACTAGTCAATGTC+AGG - tig0018631:8988-9007 Msa1368260:CDS 35.0%
!!! AGCCGTTTTTCATTAACGAT+AGG + tig0018631:9243-9262 None:intergenic 35.0%
! AAAGTTACTCTAGGGATAAC+AGG + tig0018631:9719-9738 None:intergenic 35.0%
CAACGGATAAAAGTTACTCT+AGG + tig0018631:9728-9747 None:intergenic 35.0%
AAAGTCGTAAGACCATGTAT+GGG + tig0018631:10354-10373 None:intergenic 35.0%
! CATATTGACTAGTCAATGTC+AGG - tig0018631:8988-9007 Msa1368260:CDS 35.0%
!!! AGCCGTTTTTCATTAACGAT+AGG + tig0018631:9243-9262 None:intergenic 35.0%
! AAAGTTACTCTAGGGATAAC+AGG + tig0018631:9719-9738 None:intergenic 35.0%
CAACGGATAAAAGTTACTCT+AGG + tig0018631:9728-9747 None:intergenic 35.0%
AAAGTCGTAAGACCATGTAT+GGG + tig0018631:10354-10373 None:intergenic 35.0%
TCGTTCATGGTTCGATATTC+TGG + tig0018631:8947-8966 None:intergenic 40.0%
TCGAACCATGAACGAAGTAA+AGG - tig0018631:8952-8971 Msa1368260:CDS 40.0%
TCATGCCTTTACTTCGTTCA+TGG + tig0018631:8960-8979 None:intergenic 40.0%
TTGAATAGCTAGGGATGGAA+GGG + tig0018631:9052-9071 None:intergenic 40.0%
TTCCATCCCTAGCTATTCAA+GGG - tig0018631:9052-9071 Msa1368260:CDS 40.0%
ATTGCCTGATCGAATTGATC+AGG - tig0018631:9139-9158 Msa1368260:CDS 40.0%
ATGACCTGATCAATTCGATC+AGG + tig0018631:9146-9165 None:intergenic 40.0%
GATCAGGTCATGTAAGAACA+AGG - tig0018631:9155-9174 Msa1368260:CDS 40.0%
AGAACAAGGTTCAAGTCTAC+CGG - tig0018631:9169-9188 Msa1368260:intron 40.0%
CATTAACGATAGGTGTCAAG+TGG + tig0018631:9233-9252 None:intergenic 40.0%
GAGAATTCAAGAGAAGGTCA+CGG + tig0018631:9273-9292 None:intergenic 40.0%
!! AATAGGAGAGCACTCATCTT+GGG - tig0018631:9376-9395 Msa1368260:CDS 40.0%
TGTAGTATGTTCCAAGGGTT+GGG + tig0018631:9624-9643 None:intergenic 40.0%
! AACTTTTATCCGTTGAGCGA+CGG - tig0018631:9733-9752 Msa1368260:CDS 40.0%
TCAGGTAGACAGTTTCTATG+GGG + tig0018631:9921-9940 None:intergenic 40.0%
CTCAGGTAGACAGTTTCTAT+GGG + tig0018631:9922-9941 None:intergenic 40.0%
TCTCAGGTAGACAGTTTCTA+TGG + tig0018631:9923-9942 None:intergenic 40.0%
TAGACATGTCTGTGAAGATG+CGG + tig0018631:10135-10154 None:intergenic 40.0%
AAGGTAGCGAAATTCCTTGT+CGG + tig0018631:10224-10243 None:intergenic 40.0%
ACAAGGAATTTCGCTACCTT+AGG - tig0018631:10224-10243 Msa1368260:intron 40.0%
CCTTAGGACCGTTATAGTTA+CGG - tig0018631:10240-10259 Msa1368260:intron 40.0%
AAGTCGTAAGACCATGTATG+GGG + tig0018631:10353-10372 None:intergenic 40.0%
CAAAGTCGTAAGACCATGTA+TGG + tig0018631:10355-10374 None:intergenic 40.0%
! TACATGGTCTTACGACTTTG+CGG - tig0018631:10355-10374 Msa1368260:CDS 40.0%
TCGTTCATGGTTCGATATTC+TGG + tig0018631:8947-8966 None:intergenic 40.0%
TCGAACCATGAACGAAGTAA+AGG - tig0018631:8952-8971 Msa1368260:CDS 40.0%
TCATGCCTTTACTTCGTTCA+TGG + tig0018631:8960-8979 None:intergenic 40.0%
TTGAATAGCTAGGGATGGAA+GGG + tig0018631:9052-9071 None:intergenic 40.0%
TTCCATCCCTAGCTATTCAA+GGG - tig0018631:9052-9071 Msa1368260:CDS 40.0%
ATTGCCTGATCGAATTGATC+AGG - tig0018631:9139-9158 Msa1368260:CDS 40.0%
ATGACCTGATCAATTCGATC+AGG + tig0018631:9146-9165 None:intergenic 40.0%
GATCAGGTCATGTAAGAACA+AGG - tig0018631:9155-9174 Msa1368260:CDS 40.0%
AGAACAAGGTTCAAGTCTAC+CGG - tig0018631:9169-9188 Msa1368260:intron 40.0%
CATTAACGATAGGTGTCAAG+TGG + tig0018631:9233-9252 None:intergenic 40.0%
GAGAATTCAAGAGAAGGTCA+CGG + tig0018631:9273-9292 None:intergenic 40.0%
!! AATAGGAGAGCACTCATCTT+GGG - tig0018631:9376-9395 Msa1368260:CDS 40.0%
TGTAGTATGTTCCAAGGGTT+GGG + tig0018631:9624-9643 None:intergenic 40.0%
! AACTTTTATCCGTTGAGCGA+CGG - tig0018631:9733-9752 Msa1368260:CDS 40.0%
TCAGGTAGACAGTTTCTATG+GGG + tig0018631:9921-9940 None:intergenic 40.0%
CTCAGGTAGACAGTTTCTAT+GGG + tig0018631:9922-9941 None:intergenic 40.0%
TCTCAGGTAGACAGTTTCTA+TGG + tig0018631:9923-9942 None:intergenic 40.0%
TAGACATGTCTGTGAAGATG+CGG + tig0018631:10135-10154 None:intergenic 40.0%
AAGGTAGCGAAATTCCTTGT+CGG + tig0018631:10224-10243 None:intergenic 40.0%
ACAAGGAATTTCGCTACCTT+AGG - tig0018631:10224-10243 Msa1368260:intron 40.0%
CCTTAGGACCGTTATAGTTA+CGG - tig0018631:10240-10259 Msa1368260:intron 40.0%
AAGTCGTAAGACCATGTATG+GGG + tig0018631:10353-10372 None:intergenic 40.0%
CAAAGTCGTAAGACCATGTA+TGG + tig0018631:10355-10374 None:intergenic 40.0%
! TACATGGTCTTACGACTTTG+CGG - tig0018631:10355-10374 Msa1368260:CDS 40.0%
GTTCGATATTCTGGTGTCCT+AGG + tig0018631:8938-8957 None:intergenic 45.0%
GTCAGGTCCTAATTCTTGAC+TGG - tig0018631:9005-9024 Msa1368260:CDS 45.0%
GTCCTAATTCTTGACTGGAG+AGG - tig0018631:9010-9029 Msa1368260:CDS 45.0%
GTCCTCTCCAGTCAAGAATT+AGG + tig0018631:9015-9034 None:intergenic 45.0%
CTTGAATAGCTAGGGATGGA+AGG + tig0018631:9053-9072 None:intergenic 45.0%
CTTCCATCCCTAGCTATTCA+AGG - tig0018631:9051-9070 Msa1368260:CDS 45.0%
ATCCCTTGAATAGCTAGGGA+TGG + tig0018631:9057-9076 None:intergenic 45.0%
ATCCCTAGCTATTCAAGGGA+TGG - tig0018631:9056-9075 Msa1368260:CDS 45.0%
TCCCTAGCTATTCAAGGGAT+GGG - tig0018631:9057-9076 Msa1368260:CDS 45.0%
TTCAAGTCTACCGGTCTGTT+AGG - tig0018631:9178-9197 Msa1368260:intron 45.0%
TGCAGTAATGTATGCAGCTG+AGG + tig0018631:9207-9226 None:intergenic 45.0%
!! GAATAGGAGAGCACTCATCT+TGG - tig0018631:9375-9394 Msa1368260:CDS 45.0%
!! ATAGGAGAGCACTCATCTTG+GGG - tig0018631:9377-9396 Msa1368260:CDS 45.0%
TTTACCGTTGGCACGATAAC+TGG - tig0018631:9458-9477 Msa1368260:CDS 45.0%
ATTAAAGCGGTACGTGAGCT+GGG + tig0018631:9591-9610 None:intergenic 45.0%
AGCTCACGTACCGCTTTAAT+GGG - tig0018631:9591-9610 Msa1368260:CDS 45.0%
CTGTAGTATGTTCCAAGGGT+TGG + tig0018631:9625-9644 None:intergenic 45.0%
GGAGCTGTAGTATGTTCCAA+GGG + tig0018631:9629-9648 None:intergenic 45.0%
TGGAGCTGTAGTATGTTCCA+AGG + tig0018631:9630-9649 None:intergenic 45.0%
TTGGAACATACTACAGCTCC+AGG - tig0018631:9629-9648 Msa1368260:CDS 45.0%
!! GAATTCTAGCTCTTCCAGAG+TGG - tig0018631:9974-9993 Msa1368260:intron 45.0%
ATGAAGCTTCACTGTTCCCT+GGG + tig0018631:10084-10103 None:intergenic 45.0%
TATGAAGCTTCACTGTTCCC+TGG + tig0018631:10085-10104 None:intergenic 45.0%
AGGGAACAGTGAAGCTTCAT+AGG - tig0018631:10084-10103 Msa1368260:intron 45.0%
GGGAACAGTGAAGCTTCATA+GGG - tig0018631:10085-10104 Msa1368260:intron 45.0%
TTCATAGGGTCTTTCTGTCC+AGG - tig0018631:10099-10118 Msa1368260:intron 45.0%
AGGTAGCGAAATTCCTTGTC+GGG + tig0018631:10223-10242 None:intergenic 45.0%
CCGTAACTATAACGGTCCTA+AGG + tig0018631:10243-10262 None:intergenic 45.0%
!! AAGTTGGTGACCTGATGACA+GGG + tig0018631:10298-10317 None:intergenic 45.0%
CACCAACTTCCTTAACCTTC+CGG - tig0018631:10309-10328 Msa1368260:intron 45.0%
AGTCGTAAGACCATGTATGG+GGG + tig0018631:10352-10371 None:intergenic 45.0%
! TTTGCGGAGACCTGTGTTTT+TGG - tig0018631:10371-10390 Msa1368260:CDS 45.0%
GTTCGATATTCTGGTGTCCT+AGG + tig0018631:8938-8957 None:intergenic 45.0%
GTCAGGTCCTAATTCTTGAC+TGG - tig0018631:9005-9024 Msa1368260:CDS 45.0%
GTCCTAATTCTTGACTGGAG+AGG - tig0018631:9010-9029 Msa1368260:CDS 45.0%
GTCCTCTCCAGTCAAGAATT+AGG + tig0018631:9015-9034 None:intergenic 45.0%
CTTGAATAGCTAGGGATGGA+AGG + tig0018631:9053-9072 None:intergenic 45.0%
CTTCCATCCCTAGCTATTCA+AGG - tig0018631:9051-9070 Msa1368260:CDS 45.0%
ATCCCTTGAATAGCTAGGGA+TGG + tig0018631:9057-9076 None:intergenic 45.0%
ATCCCTAGCTATTCAAGGGA+TGG - tig0018631:9056-9075 Msa1368260:CDS 45.0%
TCCCTAGCTATTCAAGGGAT+GGG - tig0018631:9057-9076 Msa1368260:CDS 45.0%
TTCAAGTCTACCGGTCTGTT+AGG - tig0018631:9178-9197 Msa1368260:intron 45.0%
TGCAGTAATGTATGCAGCTG+AGG + tig0018631:9207-9226 None:intergenic 45.0%
!! GAATAGGAGAGCACTCATCT+TGG - tig0018631:9375-9394 Msa1368260:CDS 45.0%
!! ATAGGAGAGCACTCATCTTG+GGG - tig0018631:9377-9396 Msa1368260:CDS 45.0%
TTTACCGTTGGCACGATAAC+TGG - tig0018631:9458-9477 Msa1368260:CDS 45.0%
ATTAAAGCGGTACGTGAGCT+GGG + tig0018631:9591-9610 None:intergenic 45.0%
AGCTCACGTACCGCTTTAAT+GGG - tig0018631:9591-9610 Msa1368260:CDS 45.0%
CTGTAGTATGTTCCAAGGGT+TGG + tig0018631:9625-9644 None:intergenic 45.0%
GGAGCTGTAGTATGTTCCAA+GGG + tig0018631:9629-9648 None:intergenic 45.0%
TGGAGCTGTAGTATGTTCCA+AGG + tig0018631:9630-9649 None:intergenic 45.0%
TTGGAACATACTACAGCTCC+AGG - tig0018631:9629-9648 Msa1368260:CDS 45.0%
!! GAATTCTAGCTCTTCCAGAG+TGG - tig0018631:9974-9993 Msa1368260:intron 45.0%
ATGAAGCTTCACTGTTCCCT+GGG + tig0018631:10084-10103 None:intergenic 45.0%
TATGAAGCTTCACTGTTCCC+TGG + tig0018631:10085-10104 None:intergenic 45.0%
AGGGAACAGTGAAGCTTCAT+AGG - tig0018631:10084-10103 Msa1368260:intron 45.0%
GGGAACAGTGAAGCTTCATA+GGG - tig0018631:10085-10104 Msa1368260:intron 45.0%
TTCATAGGGTCTTTCTGTCC+AGG - tig0018631:10099-10118 Msa1368260:intron 45.0%
AGGTAGCGAAATTCCTTGTC+GGG + tig0018631:10223-10242 None:intergenic 45.0%
CCGTAACTATAACGGTCCTA+AGG + tig0018631:10243-10262 None:intergenic 45.0%
!! AAGTTGGTGACCTGATGACA+GGG + tig0018631:10298-10317 None:intergenic 45.0%
CACCAACTTCCTTAACCTTC+CGG - tig0018631:10309-10328 Msa1368260:intron 45.0%
AGTCGTAAGACCATGTATGG+GGG + tig0018631:10352-10371 None:intergenic 45.0%
! TTTGCGGAGACCTGTGTTTT+TGG - tig0018631:10371-10390 Msa1368260:CDS 45.0%
TTGACTGGAGAGGACACCAA+AGG - tig0018631:9020-9039 Msa1368260:CDS 50.0%
CCCCATCCCTTGAATAGCTA+GGG + tig0018631:9061-9080 None:intergenic 50.0%
CCCTAGCTATTCAAGGGATG+GGG - tig0018631:9058-9077 Msa1368260:CDS 50.0%
CCTAGCTATTCAAGGGATGG+GGG - tig0018631:9059-9078 Msa1368260:CDS 50.0%
CAGAGAACCCATCGCTGTTT+CGG - tig0018631:9323-9342 Msa1368260:intron 50.0%
ATCACAGCCGAAACAGCGAT+GGG + tig0018631:9333-9352 None:intergenic 50.0%
TATCACAGCCGAAACAGCGA+TGG + tig0018631:9334-9353 None:intergenic 50.0%
TGTGCCAGTTATCGTGCCAA+CGG + tig0018631:9465-9484 None:intergenic 50.0%
TTTCCCTAGTACGAGAGGAC+CGG + tig0018631:9505-9524 None:intergenic 50.0%
GAGACAGTTCGGTCCATATC+CGG + tig0018631:9555-9574 None:intergenic 50.0%
CAGAACGTCGTGAGACAGTT+CGG + tig0018631:9566-9585 None:intergenic 50.0%
CATTAAAGCGGTACGTGAGC+TGG + tig0018631:9592-9611 None:intergenic 50.0%
CAGCTCACGTACCGCTTTAA+TGG - tig0018631:9590-9609 Msa1368260:CDS 50.0%
GAACATACTACAGCTCCAGG+TGG - tig0018631:9632-9651 Msa1368260:CDS 50.0%
AAGGTTTGGCACCTCGATGT+CGG + tig0018631:9665-9684 None:intergenic 50.0%
GTAGGCCTCCCAAAAGGTAA+CGG + tig0018631:9897-9916 None:intergenic 50.0%
AGACAGTTTCTATGGGGCGT+AGG + tig0018631:9915-9934 None:intergenic 50.0%
CTTGTGCCAGTACAGACCAA+GGG + tig0018631:9950-9969 None:intergenic 50.0%
CCATCAGTGAGATACCACTC+TGG + tig0018631:9991-10010 None:intergenic 50.0%
CCAGAGTGGTATCTCACTGA+TGG - tig0018631:9988-10007 Msa1368260:intron 50.0%
GCTTAGGTGGAAGGCAAAGA+AGG + tig0018631:10036-10055 None:intergenic 50.0%
AAAAGCCCAAAGCCAATCCC+AGG - tig0018631:10064-10083 Msa1368260:intron 50.0%
AAAGCCCAAAGCCAATCCCA+GGG - tig0018631:10065-10084 Msa1368260:intron 50.0%
!! TGTTCCCTGGGATTGGCTTT+GGG + tig0018631:10072-10091 None:intergenic 50.0%
! TAACGATCTGGGCACTGTCT+CGG + tig0018631:10175-10194 None:intergenic 50.0%
! CACGAAAGGCGTAACGATCT+GGG + tig0018631:10186-10205 None:intergenic 50.0%
AGATCGTTACGCCTTTCGTG+CGG - tig0018631:10186-10205 Msa1368260:CDS 50.0%
AACGGCGGCCGTAACTATAA+CGG + tig0018631:10251-10270 None:intergenic 50.0%
!! GAAGTTGGTGACCTGATGAC+AGG + tig0018631:10299-10318 None:intergenic 50.0%
TGCCGGAAGGTTAAGGAAGT+TGG + tig0018631:10314-10333 None:intergenic 50.0%
TTCCTTAACCTTCCGGCACT+GGG - tig0018631:10316-10335 Msa1368260:intron 50.0%
TTGACTGGAGAGGACACCAA+AGG - tig0018631:9020-9039 Msa1368260:CDS 50.0%
CCCCATCCCTTGAATAGCTA+GGG + tig0018631:9061-9080 None:intergenic 50.0%
CCCTAGCTATTCAAGGGATG+GGG - tig0018631:9058-9077 Msa1368260:CDS 50.0%
CCTAGCTATTCAAGGGATGG+GGG - tig0018631:9059-9078 Msa1368260:CDS 50.0%
CAGAGAACCCATCGCTGTTT+CGG - tig0018631:9323-9342 Msa1368260:intron 50.0%
ATCACAGCCGAAACAGCGAT+GGG + tig0018631:9333-9352 None:intergenic 50.0%
TATCACAGCCGAAACAGCGA+TGG + tig0018631:9334-9353 None:intergenic 50.0%
TGTGCCAGTTATCGTGCCAA+CGG + tig0018631:9465-9484 None:intergenic 50.0%
TTTCCCTAGTACGAGAGGAC+CGG + tig0018631:9505-9524 None:intergenic 50.0%
GAGACAGTTCGGTCCATATC+CGG + tig0018631:9555-9574 None:intergenic 50.0%
CAGAACGTCGTGAGACAGTT+CGG + tig0018631:9566-9585 None:intergenic 50.0%
CATTAAAGCGGTACGTGAGC+TGG + tig0018631:9592-9611 None:intergenic 50.0%
CAGCTCACGTACCGCTTTAA+TGG - tig0018631:9590-9609 Msa1368260:CDS 50.0%
GAACATACTACAGCTCCAGG+TGG - tig0018631:9632-9651 Msa1368260:CDS 50.0%
AAGGTTTGGCACCTCGATGT+CGG + tig0018631:9665-9684 None:intergenic 50.0%
GTAGGCCTCCCAAAAGGTAA+CGG + tig0018631:9897-9916 None:intergenic 50.0%
AGACAGTTTCTATGGGGCGT+AGG + tig0018631:9915-9934 None:intergenic 50.0%
CTTGTGCCAGTACAGACCAA+GGG + tig0018631:9950-9969 None:intergenic 50.0%
CCATCAGTGAGATACCACTC+TGG + tig0018631:9991-10010 None:intergenic 50.0%
CCAGAGTGGTATCTCACTGA+TGG - tig0018631:9988-10007 Msa1368260:intron 50.0%
GCTTAGGTGGAAGGCAAAGA+AGG + tig0018631:10036-10055 None:intergenic 50.0%
AAAAGCCCAAAGCCAATCCC+AGG - tig0018631:10064-10083 Msa1368260:intron 50.0%
AAAGCCCAAAGCCAATCCCA+GGG - tig0018631:10065-10084 Msa1368260:intron 50.0%
!! TGTTCCCTGGGATTGGCTTT+GGG + tig0018631:10072-10091 None:intergenic 50.0%
! TAACGATCTGGGCACTGTCT+CGG + tig0018631:10175-10194 None:intergenic 50.0%
! CACGAAAGGCGTAACGATCT+GGG + tig0018631:10186-10205 None:intergenic 50.0%
AGATCGTTACGCCTTTCGTG+CGG - tig0018631:10186-10205 Msa1368260:CDS 50.0%
AACGGCGGCCGTAACTATAA+CGG + tig0018631:10251-10270 None:intergenic 50.0%
!! GAAGTTGGTGACCTGATGAC+AGG + tig0018631:10299-10318 None:intergenic 50.0%
TGCCGGAAGGTTAAGGAAGT+TGG + tig0018631:10314-10333 None:intergenic 50.0%
TTCCTTAACCTTCCGGCACT+GGG - tig0018631:10316-10335 Msa1368260:intron 50.0%
TTCTGGTGTCCTAGGCGTAG+AGG + tig0018631:8930-8949 None:intergenic 55.0%
CCCCCATCCCTTGAATAGCT+AGG + tig0018631:9062-9081 None:intergenic 55.0%
ATTCAAGGGATGGGGGACAG+AGG - tig0018631:9066-9085 Msa1368260:CDS 55.0%
! GCTGAGGCATCCTAACAGAC+CGG + tig0018631:9191-9210 None:intergenic 55.0%
! TTCTTTTGCTCCATCCCCGC+AGG - tig0018631:9298-9317 Msa1368260:intron 55.0%
! TCTTTTGCTCCATCCCCGCA+GGG - tig0018631:9299-9318 Msa1368260:intron 55.0%
! CGCTGTTTCGGCTGTGATAC+CGG - tig0018631:9335-9354 Msa1368260:intron 55.0%
TGTTTCGGCTGTGATACCGG+AGG - tig0018631:9338-9357 Msa1368260:CDS 55.0%
!! GAGAGCACTCATCTTGGGGT+GGG - tig0018631:9381-9400 Msa1368260:CDS 55.0%
AAACGCTGGGTAGCCAAGTG+CGG + tig0018631:9441-9460 None:intergenic 55.0%
TCGTGCCAACGGTAAACGCT+GGG + tig0018631:9454-9473 None:intergenic 55.0%
ATCGTGCCAACGGTAAACGC+TGG + tig0018631:9455-9474 None:intergenic 55.0%
CACGATAACTGGCACACCAG+AGG - tig0018631:9469-9488 Msa1368260:intron 55.0%
TTCCCGGTCCTCTCGTACTA+GGG - tig0018631:9499-9518 Msa1368260:intron 55.0%
TTCCCTAGTACGAGAGGACC+GGG + tig0018631:9504-9523 None:intergenic 55.0%
GGTCCTCTCGTACTAGGGAA+AGG - tig0018631:9504-9523 Msa1368260:intron 55.0%
GGACCTTTCCCTAGTACGAG+AGG + tig0018631:9510-9529 None:intergenic 55.0%
!! GTGGGCGTTAGAGCATTGAG+AGG + tig0018631:9531-9550 None:intergenic 55.0%
CAATGCTCTAACGCCCACAC+CGG - tig0018631:9533-9552 Msa1368260:intron 55.0%
TCTAACGCCCACACCGGATA+TGG - tig0018631:9539-9558 Msa1368260:intron 55.0%
GTTCGGTCCATATCCGGTGT+GGG + tig0018631:9549-9568 None:intergenic 55.0%
AGTTCGGTCCATATCCGGTG+TGG + tig0018631:9550-9569 None:intergenic 55.0%
GGGCTGTTCGCCCATTAAAG+CGG + tig0018631:9604-9623 None:intergenic 55.0%
CTCACATCGACGGGAAGGTT+TGG + tig0018631:9679-9698 None:intergenic 55.0%
AAGAGCTCACATCGACGGGA+AGG + tig0018631:9684-9703 None:intergenic 55.0%
TTCCCGTCGATGTGAGCTCT+TGG - tig0018631:9683-9702 Msa1368260:CDS 55.0%
TCCCGTCGATGTGAGCTCTT+GGG - tig0018631:9684-9703 Msa1368260:CDS 55.0%
TCCCCAAGAGCTCACATCGA+CGG + tig0018631:9689-9708 None:intergenic 55.0%
AGTCGGCCTTAGTGATCCGA+CGG + tig0018631:9774-9793 None:intergenic 55.0%
CCTCGAGTGCAAAGGCAGAA+GGG + tig0018631:9835-9854 None:intergenic 55.0%
CCTTCTGCCTTTGCACTCGA+GGG - tig0018631:9833-9852 Msa1368260:intron 55.0%
! AGATTGGCCCTCGAGTGCAA+AGG + tig0018631:9843-9862 None:intergenic 55.0%
AAAGGTTTCCTCGGGCCAGA+CGG + tig0018631:9866-9885 None:intergenic 55.0%
AGGCGTGCAAAGGTTTCCTC+GGG + tig0018631:9874-9893 None:intergenic 55.0%
GAGGCGTGCAAAGGTTTCCT+CGG + tig0018631:9875-9894 None:intergenic 55.0%
!! AAGGTAACGGAGGCGTGCAA+AGG + tig0018631:9884-9903 None:intergenic 55.0%
! TGCACGCCTCCGTTACCTTT+TGG - tig0018631:9885-9904 Msa1368260:intron 55.0%
! GCACGCCTCCGTTACCTTTT+GGG - tig0018631:9886-9905 Msa1368260:intron 55.0%
GTCTACCTGAGACTGTCCCT+TGG - tig0018631:9931-9950 Msa1368260:CDS 55.0%
ACAGACCAAGGGACAGTCTC+AGG + tig0018631:9939-9958 None:intergenic 55.0%
GACTGTCCCTTGGTCTGTAC+TGG - tig0018631:9941-9960 Msa1368260:CDS 55.0%
CCTTGTGCCAGTACAGACCA+AGG + tig0018631:9951-9970 None:intergenic 55.0%
! CCTTGGTCTGTACTGGCACA+AGG - tig0018631:9948-9967 Msa1368260:CDS 55.0%
AGGCAAAGAAGGCCTCCTTC+CGG + tig0018631:10025-10044 None:intergenic 55.0%
! CTTTTCCTGCGCAGCTTAGG+TGG + tig0018631:10049-10068 None:intergenic 55.0%
!! CTGTTCCCTGGGATTGGCTT+TGG + tig0018631:10073-10092 None:intergenic 55.0%
GCTTCACTGTTCCCTGGGAT+TGG + tig0018631:10079-10098 None:intergenic 55.0%
! GCACGAAAGGCGTAACGATC+TGG + tig0018631:10187-10206 None:intergenic 55.0%
GATCGTTACGCCTTTCGTGC+GGG - tig0018631:10187-10206 Msa1368260:CDS 55.0%
TAAGTTCCGACCCGCACGAA+AGG + tig0018631:10200-10219 None:intergenic 55.0%
TGACCTGATGACAGGGAAGC+CGG + tig0018631:10291-10310 None:intergenic 55.0%
CTTCCTTAACCTTCCGGCAC+TGG - tig0018631:10315-10334 Msa1368260:intron 55.0%
TTCTGGTGTCCTAGGCGTAG+AGG + tig0018631:8930-8949 None:intergenic 55.0%
CCCCCATCCCTTGAATAGCT+AGG + tig0018631:9062-9081 None:intergenic 55.0%
ATTCAAGGGATGGGGGACAG+AGG - tig0018631:9066-9085 Msa1368260:CDS 55.0%
! GCTGAGGCATCCTAACAGAC+CGG + tig0018631:9191-9210 None:intergenic 55.0%
! TTCTTTTGCTCCATCCCCGC+AGG - tig0018631:9298-9317 Msa1368260:intron 55.0%
! TCTTTTGCTCCATCCCCGCA+GGG - tig0018631:9299-9318 Msa1368260:intron 55.0%
! CGCTGTTTCGGCTGTGATAC+CGG - tig0018631:9335-9354 Msa1368260:intron 55.0%
TGTTTCGGCTGTGATACCGG+AGG - tig0018631:9338-9357 Msa1368260:CDS 55.0%
!! GAGAGCACTCATCTTGGGGT+GGG - tig0018631:9381-9400 Msa1368260:CDS 55.0%
AAACGCTGGGTAGCCAAGTG+CGG + tig0018631:9441-9460 None:intergenic 55.0%
TCGTGCCAACGGTAAACGCT+GGG + tig0018631:9454-9473 None:intergenic 55.0%
ATCGTGCCAACGGTAAACGC+TGG + tig0018631:9455-9474 None:intergenic 55.0%
CACGATAACTGGCACACCAG+AGG - tig0018631:9469-9488 Msa1368260:intron 55.0%
TTCCCGGTCCTCTCGTACTA+GGG - tig0018631:9499-9518 Msa1368260:intron 55.0%
TTCCCTAGTACGAGAGGACC+GGG + tig0018631:9504-9523 None:intergenic 55.0%
GGTCCTCTCGTACTAGGGAA+AGG - tig0018631:9504-9523 Msa1368260:intron 55.0%
GGACCTTTCCCTAGTACGAG+AGG + tig0018631:9510-9529 None:intergenic 55.0%
!! GTGGGCGTTAGAGCATTGAG+AGG + tig0018631:9531-9550 None:intergenic 55.0%
CAATGCTCTAACGCCCACAC+CGG - tig0018631:9533-9552 Msa1368260:intron 55.0%
TCTAACGCCCACACCGGATA+TGG - tig0018631:9539-9558 Msa1368260:intron 55.0%
GTTCGGTCCATATCCGGTGT+GGG + tig0018631:9549-9568 None:intergenic 55.0%
AGTTCGGTCCATATCCGGTG+TGG + tig0018631:9550-9569 None:intergenic 55.0%
GGGCTGTTCGCCCATTAAAG+CGG + tig0018631:9604-9623 None:intergenic 55.0%
CTCACATCGACGGGAAGGTT+TGG + tig0018631:9679-9698 None:intergenic 55.0%
AAGAGCTCACATCGACGGGA+AGG + tig0018631:9684-9703 None:intergenic 55.0%
TTCCCGTCGATGTGAGCTCT+TGG - tig0018631:9683-9702 Msa1368260:CDS 55.0%
TCCCGTCGATGTGAGCTCTT+GGG - tig0018631:9684-9703 Msa1368260:CDS 55.0%
TCCCCAAGAGCTCACATCGA+CGG + tig0018631:9689-9708 None:intergenic 55.0%
AGTCGGCCTTAGTGATCCGA+CGG + tig0018631:9774-9793 None:intergenic 55.0%
CCTCGAGTGCAAAGGCAGAA+GGG + tig0018631:9835-9854 None:intergenic 55.0%
CCTTCTGCCTTTGCACTCGA+GGG - tig0018631:9833-9852 Msa1368260:intron 55.0%
! AGATTGGCCCTCGAGTGCAA+AGG + tig0018631:9843-9862 None:intergenic 55.0%
AAAGGTTTCCTCGGGCCAGA+CGG + tig0018631:9866-9885 None:intergenic 55.0%
AGGCGTGCAAAGGTTTCCTC+GGG + tig0018631:9874-9893 None:intergenic 55.0%
GAGGCGTGCAAAGGTTTCCT+CGG + tig0018631:9875-9894 None:intergenic 55.0%
!! AAGGTAACGGAGGCGTGCAA+AGG + tig0018631:9884-9903 None:intergenic 55.0%
! TGCACGCCTCCGTTACCTTT+TGG - tig0018631:9885-9904 Msa1368260:intron 55.0%
! GCACGCCTCCGTTACCTTTT+GGG - tig0018631:9886-9905 Msa1368260:intron 55.0%
GTCTACCTGAGACTGTCCCT+TGG - tig0018631:9931-9950 Msa1368260:CDS 55.0%
ACAGACCAAGGGACAGTCTC+AGG + tig0018631:9939-9958 None:intergenic 55.0%
GACTGTCCCTTGGTCTGTAC+TGG - tig0018631:9941-9960 Msa1368260:CDS 55.0%
CCTTGTGCCAGTACAGACCA+AGG + tig0018631:9951-9970 None:intergenic 55.0%
! CCTTGGTCTGTACTGGCACA+AGG - tig0018631:9948-9967 Msa1368260:CDS 55.0%
AGGCAAAGAAGGCCTCCTTC+CGG + tig0018631:10025-10044 None:intergenic 55.0%
! CTTTTCCTGCGCAGCTTAGG+TGG + tig0018631:10049-10068 None:intergenic 55.0%
!! CTGTTCCCTGGGATTGGCTT+TGG + tig0018631:10073-10092 None:intergenic 55.0%
GCTTCACTGTTCCCTGGGAT+TGG + tig0018631:10079-10098 None:intergenic 55.0%
! GCACGAAAGGCGTAACGATC+TGG + tig0018631:10187-10206 None:intergenic 55.0%
GATCGTTACGCCTTTCGTGC+GGG - tig0018631:10187-10206 Msa1368260:CDS 55.0%
TAAGTTCCGACCCGCACGAA+AGG + tig0018631:10200-10219 None:intergenic 55.0%
TGACCTGATGACAGGGAAGC+CGG + tig0018631:10291-10310 None:intergenic 55.0%
CTTCCTTAACCTTCCGGCAC+TGG - tig0018631:10315-10334 Msa1368260:intron 55.0%
GGTGTGGTTCCTCTACGCCT+AGG - tig0018631:8918-8937 Msa1368260:CDS 60.0%
GATGGAAGGGCAGAGGCCTT+TGG + tig0018631:9039-9058 None:intergenic 60.0%
AGCTAGGGATGGAAGGGCAG+AGG + tig0018631:9046-9065 None:intergenic 60.0%
! GGGATGGGGGACAGAGGTTT+TGG - tig0018631:9072-9091 Msa1368260:CDS 60.0%
! CTTTTGCTCCATCCCCGCAG+GGG - tig0018631:9300-9319 Msa1368260:intron 60.0%
GCTGTGATACCGGAGGCTCT+GGG - tig0018631:9345-9364 Msa1368260:CDS 60.0%
CTGTGATACCGGAGGCTCTG+GGG - tig0018631:9346-9365 Msa1368260:CDS 60.0%
!! GGCTCTGGGGAAGTCGGAAT+AGG - tig0018631:9359-9378 Msa1368260:CDS 60.0%
!! GGAGAGCACTCATCTTGGGG+TGG - tig0018631:9380-9399 Msa1368260:CDS 60.0%
GCAGTTATCCGCTCCGCACT+TGG - tig0018631:9425-9444 Msa1368260:CDS 60.0%
GGCTACCCAGCGTTTACCGT+TGG - tig0018631:9446-9465 Msa1368260:CDS 60.0%
CTAGTACGAGAGGACCGGGA+AGG + tig0018631:9500-9519 None:intergenic 60.0%
CTTCCCGGTCCTCTCGTACT+AGG - tig0018631:9498-9517 Msa1368260:intron 60.0%
CCCCAAGAGCTCACATCGAC+GGG + tig0018631:9688-9707 None:intergenic 60.0%
CCCGTCGATGTGAGCTCTTG+GGG - tig0018631:9685-9704 Msa1368260:CDS 60.0%
TCGGCACCGTCGGATCACTA+AGG - tig0018631:9765-9784 Msa1368260:CDS 60.0%
CGTCGAGCAGGGACGAAAGT+CGG + tig0018631:9791-9810 None:intergenic 60.0%
CGACTTTCGTCCCTGCTCGA+CGG - tig0018631:9789-9808 Msa1368260:intron 60.0%
GACTTTCGTCCCTGCTCGAC+GGG - tig0018631:9790-9809 Msa1368260:intron 60.0%
CCCTTCTGCCTTTGCACTCG+AGG - tig0018631:9832-9851 Msa1368260:intron 60.0%
CCCTCGAGTGCAAAGGCAGA+AGG + tig0018631:9836-9855 None:intergenic 60.0%
! CGCCTCCGTTACCTTTTGGG+AGG - tig0018631:9889-9908 Msa1368260:intron 60.0%
! GGCCTCCCAAAAGGTAACGG+AGG + tig0018631:9894-9913 None:intergenic 60.0%
AAAGAAGGCCTCCTTCCGGG+GGG + tig0018631:10021-10040 None:intergenic 60.0%
CAAAGAAGGCCTCCTTCCGG+GGG + tig0018631:10022-10041 None:intergenic 60.0%
GCAAAGAAGGCCTCCTTCCG+GGG + tig0018631:10023-10042 None:intergenic 60.0%
GGCAAAGAAGGCCTCCTTCC+GGG + tig0018631:10024-10043 None:intergenic 60.0%
TCCTGCGCAGCTTAGGTGGA+AGG + tig0018631:10045-10064 None:intergenic 60.0%
! GGGCTTTTCCTGCGCAGCTT+AGG + tig0018631:10052-10071 None:intergenic 60.0%
GGGTCTTTCTGTCCAGGTGC+AGG - tig0018631:10105-10124 Msa1368260:intron 60.0%
! AGATGCGGACTACCTGCACC+TGG + tig0018631:10120-10139 None:intergenic 60.0%
CACTGTCTCGGAGAGAGGCT+CGG + tig0018631:10163-10182 None:intergenic 60.0%
GTTACGCCTTTCGTGCGGGT+CGG - tig0018631:10191-10210 Msa1368260:CDS 60.0%
GGGTCGGAACTTACCCGACA+AGG - tig0018631:10207-10226 Msa1368260:intron 60.0%
TAGTTACGGCCGCCGTTCAC+CGG - tig0018631:10254-10273 Msa1368260:intron 60.0%
! TGCCCAGTGCCGGAAGGTTA+AGG + tig0018631:10321-10340 None:intergenic 60.0%
! TTAACCTTCCGGCACTGGGC+AGG - tig0018631:10320-10339 Msa1368260:intron 60.0%
GGTGTGGTTCCTCTACGCCT+AGG - tig0018631:8918-8937 Msa1368260:CDS 60.0%
GATGGAAGGGCAGAGGCCTT+TGG + tig0018631:9039-9058 None:intergenic 60.0%
AGCTAGGGATGGAAGGGCAG+AGG + tig0018631:9046-9065 None:intergenic 60.0%
! GGGATGGGGGACAGAGGTTT+TGG - tig0018631:9072-9091 Msa1368260:CDS 60.0%
! CTTTTGCTCCATCCCCGCAG+GGG - tig0018631:9300-9319 Msa1368260:intron 60.0%
GCTGTGATACCGGAGGCTCT+GGG - tig0018631:9345-9364 Msa1368260:CDS 60.0%
CTGTGATACCGGAGGCTCTG+GGG - tig0018631:9346-9365 Msa1368260:CDS 60.0%
!! GGCTCTGGGGAAGTCGGAAT+AGG - tig0018631:9359-9378 Msa1368260:CDS 60.0%
!! GGAGAGCACTCATCTTGGGG+TGG - tig0018631:9380-9399 Msa1368260:CDS 60.0%
GCAGTTATCCGCTCCGCACT+TGG - tig0018631:9425-9444 Msa1368260:CDS 60.0%
GGCTACCCAGCGTTTACCGT+TGG - tig0018631:9446-9465 Msa1368260:CDS 60.0%
CTAGTACGAGAGGACCGGGA+AGG + tig0018631:9500-9519 None:intergenic 60.0%
CTTCCCGGTCCTCTCGTACT+AGG - tig0018631:9498-9517 Msa1368260:intron 60.0%
CCCCAAGAGCTCACATCGAC+GGG + tig0018631:9688-9707 None:intergenic 60.0%
CCCGTCGATGTGAGCTCTTG+GGG - tig0018631:9685-9704 Msa1368260:CDS 60.0%
TCGGCACCGTCGGATCACTA+AGG - tig0018631:9765-9784 Msa1368260:CDS 60.0%
CGTCGAGCAGGGACGAAAGT+CGG + tig0018631:9791-9810 None:intergenic 60.0%
CGACTTTCGTCCCTGCTCGA+CGG - tig0018631:9789-9808 Msa1368260:intron 60.0%
GACTTTCGTCCCTGCTCGAC+GGG - tig0018631:9790-9809 Msa1368260:intron 60.0%
CCCTTCTGCCTTTGCACTCG+AGG - tig0018631:9832-9851 Msa1368260:intron 60.0%
CCCTCGAGTGCAAAGGCAGA+AGG + tig0018631:9836-9855 None:intergenic 60.0%
! CGCCTCCGTTACCTTTTGGG+AGG - tig0018631:9889-9908 Msa1368260:intron 60.0%
! GGCCTCCCAAAAGGTAACGG+AGG + tig0018631:9894-9913 None:intergenic 60.0%
AAAGAAGGCCTCCTTCCGGG+GGG + tig0018631:10021-10040 None:intergenic 60.0%
CAAAGAAGGCCTCCTTCCGG+GGG + tig0018631:10022-10041 None:intergenic 60.0%
GCAAAGAAGGCCTCCTTCCG+GGG + tig0018631:10023-10042 None:intergenic 60.0%
GGCAAAGAAGGCCTCCTTCC+GGG + tig0018631:10024-10043 None:intergenic 60.0%
TCCTGCGCAGCTTAGGTGGA+AGG + tig0018631:10045-10064 None:intergenic 60.0%
! GGGCTTTTCCTGCGCAGCTT+AGG + tig0018631:10052-10071 None:intergenic 60.0%
GGGTCTTTCTGTCCAGGTGC+AGG - tig0018631:10105-10124 Msa1368260:intron 60.0%
! AGATGCGGACTACCTGCACC+TGG + tig0018631:10120-10139 None:intergenic 60.0%
CACTGTCTCGGAGAGAGGCT+CGG + tig0018631:10163-10182 None:intergenic 60.0%
GTTACGCCTTTCGTGCGGGT+CGG - tig0018631:10191-10210 Msa1368260:CDS 60.0%
GGGTCGGAACTTACCCGACA+AGG - tig0018631:10207-10226 Msa1368260:intron 60.0%
TAGTTACGGCCGCCGTTCAC+CGG - tig0018631:10254-10273 Msa1368260:intron 60.0%
! TGCCCAGTGCCGGAAGGTTA+AGG + tig0018631:10321-10340 None:intergenic 60.0%
! TTAACCTTCCGGCACTGGGC+AGG - tig0018631:10320-10339 Msa1368260:intron 60.0%
ATGGGTTCTCTGCCCCTGCG+GGG + tig0018631:9315-9334 None:intergenic 65.0%
! GATGGGTTCTCTGCCCCTGC+GGG + tig0018631:9316-9335 None:intergenic 65.0%
! CGATGGGTTCTCTGCCCCTG+CGG + tig0018631:9317-9336 None:intergenic 65.0%
GGCTGTGATACCGGAGGCTC+TGG - tig0018631:9344-9363 Msa1368260:CDS 65.0%
!! ACCGGAGGCTCTGGGGAAGT+CGG - tig0018631:9353-9372 Msa1368260:CDS 65.0%
TCCGACTTCCCCAGAGCCTC+CGG + tig0018631:9357-9376 None:intergenic 65.0%
CTGGGTAGCCAAGTGCGGAG+CGG + tig0018631:9436-9455 None:intergenic 65.0%
! CACCAGAGGTGCGTCCTTCC+CGG - tig0018631:9483-9502 Msa1368260:intron 65.0%
TGGGCGAACAGCCCAACCCT+TGG - tig0018631:9610-9629 Msa1368260:CDS 65.0%
!! GATGTCGGCTCTTCGCCACC+TGG + tig0018631:9650-9669 None:intergenic 65.0%
GTGGCGAAGAGCCGACATCG+AGG - tig0018631:9651-9670 Msa1368260:CDS 65.0%
GTGGAAGGGCCGTCGCTCAA+CGG + tig0018631:9745-9764 None:intergenic 65.0%
TGAGCGACGGCCCTTCCACT+CGG - tig0018631:9746-9765 Msa1368260:CDS 65.0%
! TCCGACGGTGCCGAGTGGAA+GGG + tig0018631:9759-9778 None:intergenic 65.0%
! ATCCGACGGTGCCGAGTGGA+AGG + tig0018631:9760-9779 None:intergenic 65.0%
! AGTGATCCGACGGTGCCGAG+TGG + tig0018631:9764-9783 None:intergenic 65.0%
TTTCGTCCCTGCTCGACGGG+TGG - tig0018631:9793-9812 Msa1368260:intron 65.0%
TTCGTCCCTGCTCGACGGGT+GGG - tig0018631:9794-9813 Msa1368260:intron 65.0%
CAAGACCCACCCGTCGAGCA+GGG + tig0018631:9802-9821 None:intergenic 65.0%
CTCGAGGGCCAATCTCCGTC+TGG - tig0018631:9848-9867 Msa1368260:intron 65.0%
TCCTCGGGCCAGACGGAGAT+TGG + tig0018631:9859-9878 None:intergenic 65.0%
TGGGGCGTAGGCCTCCCAAA+AGG + tig0018631:9903-9922 None:intergenic 65.0%
AAGAAGGCCTCCTTCCGGGG+GGG + tig0018631:10020-10039 None:intergenic 65.0%
GCCTTCCACCTAAGCTGCGC+AGG - tig0018631:10041-10060 Msa1368260:intron 65.0%
! CTGGGCACTGTCTCGGAGAG+AGG + tig0018631:10168-10187 None:intergenic 65.0%
AGTTACGGCCGCCGTTCACC+GGG - tig0018631:10255-10274 Msa1368260:intron 65.0%
!! TCGCCGGCTTCCCTGTCATC+AGG - tig0018631:10285-10304 Msa1368260:intron 65.0%
CAGGCGTCAGCCCCCATACA+TGG - tig0018631:10339-10358 Msa1368260:intron 65.0%
ATGGGTTCTCTGCCCCTGCG+GGG + tig0018631:9315-9334 None:intergenic 65.0%
! GATGGGTTCTCTGCCCCTGC+GGG + tig0018631:9316-9335 None:intergenic 65.0%
! CGATGGGTTCTCTGCCCCTG+CGG + tig0018631:9317-9336 None:intergenic 65.0%
GGCTGTGATACCGGAGGCTC+TGG - tig0018631:9344-9363 Msa1368260:CDS 65.0%
!! ACCGGAGGCTCTGGGGAAGT+CGG - tig0018631:9353-9372 Msa1368260:CDS 65.0%
TCCGACTTCCCCAGAGCCTC+CGG + tig0018631:9357-9376 None:intergenic 65.0%
CTGGGTAGCCAAGTGCGGAG+CGG + tig0018631:9436-9455 None:intergenic 65.0%
! CACCAGAGGTGCGTCCTTCC+CGG - tig0018631:9483-9502 Msa1368260:intron 65.0%
TGGGCGAACAGCCCAACCCT+TGG - tig0018631:9610-9629 Msa1368260:CDS 65.0%
!! GATGTCGGCTCTTCGCCACC+TGG + tig0018631:9650-9669 None:intergenic 65.0%
GTGGCGAAGAGCCGACATCG+AGG - tig0018631:9651-9670 Msa1368260:CDS 65.0%
GTGGAAGGGCCGTCGCTCAA+CGG + tig0018631:9745-9764 None:intergenic 65.0%
TGAGCGACGGCCCTTCCACT+CGG - tig0018631:9746-9765 Msa1368260:CDS 65.0%
! TCCGACGGTGCCGAGTGGAA+GGG + tig0018631:9759-9778 None:intergenic 65.0%
! ATCCGACGGTGCCGAGTGGA+AGG + tig0018631:9760-9779 None:intergenic 65.0%
! AGTGATCCGACGGTGCCGAG+TGG + tig0018631:9764-9783 None:intergenic 65.0%
TTTCGTCCCTGCTCGACGGG+TGG - tig0018631:9793-9812 Msa1368260:intron 65.0%
TTCGTCCCTGCTCGACGGGT+GGG - tig0018631:9794-9813 Msa1368260:intron 65.0%
CAAGACCCACCCGTCGAGCA+GGG + tig0018631:9802-9821 None:intergenic 65.0%
CTCGAGGGCCAATCTCCGTC+TGG - tig0018631:9848-9867 Msa1368260:intron 65.0%
TCCTCGGGCCAGACGGAGAT+TGG + tig0018631:9859-9878 None:intergenic 65.0%
TGGGGCGTAGGCCTCCCAAA+AGG + tig0018631:9903-9922 None:intergenic 65.0%
AAGAAGGCCTCCTTCCGGGG+GGG + tig0018631:10020-10039 None:intergenic 65.0%
GCCTTCCACCTAAGCTGCGC+AGG - tig0018631:10041-10060 Msa1368260:intron 65.0%
! CTGGGCACTGTCTCGGAGAG+AGG + tig0018631:10168-10187 None:intergenic 65.0%
AGTTACGGCCGCCGTTCACC+GGG - tig0018631:10255-10274 Msa1368260:intron 65.0%
!! TCGCCGGCTTCCCTGTCATC+AGG - tig0018631:10285-10304 Msa1368260:intron 65.0%
CAGGCGTCAGCCCCCATACA+TGG - tig0018631:10339-10358 Msa1368260:intron 65.0%
GTTCTCTGCCCCTGCGGGGA+TGG + tig0018631:9311-9330 None:intergenic 70.0%
GACCGGGAAGGACGCACCTC+TGG + tig0018631:9488-9507 None:intergenic 70.0%
GCCCTTCCACTCGGCACCGT+CGG - tig0018631:9755-9774 Msa1368260:CDS 70.0%
GCAAGACCCACCCGTCGAGC+AGG + tig0018631:9803-9822 None:intergenic 70.0%
GCCAATCTCCGTCTGGCCCG+AGG - tig0018631:9855-9874 Msa1368260:intron 70.0%
ACTGATGGCTCGAGCCCCCC+CGG - tig0018631:10003-10022 Msa1368260:intron 70.0%
GTTACGGCCGCCGTTCACCG+GGG - tig0018631:10256-10275 Msa1368260:intron 70.0%
ACCGAAGCCCCGGTGAACGG+CGG + tig0018631:10266-10285 None:intergenic 70.0%
GCGACCGAAGCCCCGGTGAA+CGG + tig0018631:10269-10288 None:intergenic 70.0%
TTCACCGGGGCTTCGGTCGC+CGG - tig0018631:10269-10288 Msa1368260:intron 70.0%
GTTCTCTGCCCCTGCGGGGA+TGG + tig0018631:9311-9330 None:intergenic 70.0%
GACCGGGAAGGACGCACCTC+TGG + tig0018631:9488-9507 None:intergenic 70.0%
GCCCTTCCACTCGGCACCGT+CGG - tig0018631:9755-9774 Msa1368260:CDS 70.0%
GCAAGACCCACCCGTCGAGC+AGG + tig0018631:9803-9822 None:intergenic 70.0%
GCCAATCTCCGTCTGGCCCG+AGG - tig0018631:9855-9874 Msa1368260:intron 70.0%
ACTGATGGCTCGAGCCCCCC+CGG - tig0018631:10003-10022 Msa1368260:intron 70.0%
GTTACGGCCGCCGTTCACCG+GGG - tig0018631:10256-10275 Msa1368260:intron 70.0%
ACCGAAGCCCCGGTGAACGG+CGG + tig0018631:10266-10285 None:intergenic 70.0%
GCGACCGAAGCCCCGGTGAA+CGG + tig0018631:10269-10288 None:intergenic 70.0%
TTCACCGGGGCTTCGGTCGC+CGG - tig0018631:10269-10288 Msa1368260:intron 70.0%
ATGGCTCGAGCCCCCCCGGA+AGG - tig0018631:10007-10026 Msa1368260:intron 75.0%
GCCGCCGTTCACCGGGGCTT+CGG - tig0018631:10262-10281 Msa1368260:intron 75.0%
GAAGCCGGCGACCGAAGCCC+CGG + tig0018631:10276-10295 None:intergenic 75.0%
! GACGCCTGCCCAGTGCCGGA+AGG + tig0018631:10327-10346 None:intergenic 75.0%
GGCTGACGCCTGCCCAGTGC+CGG + tig0018631:10331-10350 None:intergenic 75.0%
ATGGCTCGAGCCCCCCCGGA+AGG - tig0018631:10007-10026 Msa1368260:intron 75.0%
GCCGCCGTTCACCGGGGCTT+CGG - tig0018631:10262-10281 Msa1368260:intron 75.0%
GAAGCCGGCGACCGAAGCCC+CGG + tig0018631:10276-10295 None:intergenic 75.0%
! GACGCCTGCCCAGTGCCGGA+AGG + tig0018631:10327-10346 None:intergenic 75.0%
GGCTGACGCCTGCCCAGTGC+CGG + tig0018631:10331-10350 None:intergenic 75.0%
! GCTCGAGCCCCCCCGGAAGG+AGG - tig0018631:10010-10029 Msa1368260:intron 80.0%
! GCTCGAGCCCCCCCGGAAGG+AGG - tig0018631:10010-10029 Msa1368260:intron 80.0%
Chromosome Type Strat End Strand Name
tig0018631 gene 8911 10396 8911 ID=Msa1368260;Name=Msa1368260
tig0018631 mRNA 8911 10396 8911 ID=Msa1368260-mRNA-1;Parent=Msa1368260;Name=Msa1368260-mRNA-1;_AED=0.47;_eAED=0.48;_QI=0|0|0|0.5|1|1|6|0|280
tig0018631 exon 10340 10396 10340 ID=Msa1368260-mRNA-1:exon:395;Parent=Msa1368260-mRNA-1
tig0018631 exon 10147 10221 10147 ID=Msa1368260-mRNA-1:exon:394;Parent=Msa1368260-mRNA-1
tig0018631 exon 9909 9987 9909 ID=Msa1368260-mRNA-1:exon:393;Parent=Msa1368260-mRNA-1
tig0018631 exon 9577 9787 9577 ID=Msa1368260-mRNA-1:exon:392;Parent=Msa1368260-mRNA-1
tig0018631 exon 9338 9482 9338 ID=Msa1368260-mRNA-1:exon:391;Parent=Msa1368260-mRNA-1
tig0018631 exon 8911 9186 8911 ID=Msa1368260-mRNA-1:exon:390;Parent=Msa1368260-mRNA-1
tig0018631 CDS 10340 10396 10340 ID=Msa1368260-mRNA-1:cds;Parent=Msa1368260-mRNA-1
tig0018631 CDS 10147 10221 10147 ID=Msa1368260-mRNA-1:cds;Parent=Msa1368260-mRNA-1
tig0018631 CDS 9909 9987 9909 ID=Msa1368260-mRNA-1:cds;Parent=Msa1368260-mRNA-1
tig0018631 CDS 9577 9787 9577 ID=Msa1368260-mRNA-1:cds;Parent=Msa1368260-mRNA-1
tig0018631 CDS 9338 9482 9338 ID=Msa1368260-mRNA-1:cds;Parent=Msa1368260-mRNA-1
tig0018631 CDS 8911 9186 8911 ID=Msa1368260-mRNA-1:cds;Parent=Msa1368260-mRNA-1
Gene Sequence

>Msa1368260

ATGGATTGGTGTGGTTCCTCTACGCCTAGGACACCAGAATATCGAACCATGAACGAAAGGTTTTGGTTTTTTCATGTTGTCAAAGAGTTGAACAATCAAAATAGATGGCGATTGCCTGATCGAATTGATCAGGGGCAGAGAACCCATCGCTGTTTCGGCTGTGATACCGGAGGCTCTGGGGAAGTCGGAATAGGAGAGCACTCATCTTGGGGGAAAGGTCCTCTCAATGCTCTAACGCCCACACCGGATATGGACCGAACTGTCTCACGACGTTCTGAACCCAGCTCACGTACCGCTTTAATGGGCGAACAGCCCAACCCTTGGAACATACTACAGCTCCAGGTGGCGAAGAGCCGACATCGAGGTGCCAAACCTTCCCGTCGATGTGAGCTCTTGGGGAAGATCAGCCTGTTATCCCTAGATCAAGCTCCCTTCTGCCTTTGCACTCGAGGGCCAATCTCCGTCTGGCCCGAGGAAACCTTTGCACGCCTCCGTTACCTTTTGGGAGGCCTACGCCCCATAGAAACTGTCTACCTGAGACTGTCCCTTGGTCTGTACTGGCACAAGGTGCAGGTAGTCCGCATCTTCACAGACATGTCTATTTCACCGAGCCTCTCTCCGAGACAGTGCCCAGATCGTTACGCCTTTCGTGCGGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTATAGTTACGGCCGCCGTTCACCGGGGCTTCGGTCGCCGGCTTCCCTGTCATCAGGTCACCAACTTCCTTAACCTTCCGGCACTGGGCAGGCGTCAGCCCCCATACATGGTCTTACGACTTTGCGGAGACCTGTGTTTTTGGTAA
Protein sequence

>Msa1368260

MDWCGSSTPRTPEYRTMNERFWFFHVVKELNNQNRWRLPDRIDQGQRTHRCFGCDTGGSGEVGIGEHSSWGKGPLNALTPTPDMDRTVSRRSEPSSRTALMGEQPNPWNILQLQVAKSRHRGAKPSRRCELLGKISLLSLDQAPFCLCTRGPISVWPEETFARLRYLLGGLRPIETVYLRLSLGLYWHKVQVVRIFTDMSISPSLSPRQCPDRYAFRAGRNLPDKEFRYLRTVIVTAAVHRGFGRRLPCHQVTNFLNLPALGRRQPPYMVLRLCGDLCFW*