AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1348170

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1348170 MtrunA17_Chr3g0121581 97.854 466 10 0 1 466 1 466 0.0 943
Msa1348170 MtrunA17_Chr5g0400751 25.258 388 257 9 77 453 56 421 1.12e-24 106
Msa1348170 MtrunA17_Chr7g0271361 24.603 252 161 9 74 307 48 288 1.73e-11 66.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1348170 AT1G08490.1 77.253 466 103 1 1 466 1 463 0.0 729
Msa1348170 AT5G65720.3 25.700 393 249 10 77 453 55 420 2.85e-21 96.7
Msa1348170 AT5G65720.1 25.700 393 249 10 77 453 55 420 2.85e-21 96.7
Msa1348170 AT5G65720.2 23.920 301 188 8 169 453 17 292 3.69e-13 70.9

Find 152 sgRNAs with CRISPR-Local

Find 378 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TACTGATCTTGCAACATTTC+TGG 0.138943 tig0010241:+5449 Msa1348170:CDS
GGCCCATAGATGCGAATATT+TGG 0.178379 tig0010241:-5363 None:intergenic
CAACCCCTCCATCGGTATTT+AGG 0.187810 tig0010241:+5926 Msa1348170:CDS
AACTCTTAGTTCTCCCTCTT+TGG 0.194746 tig0010241:+1382 Msa1348170:CDS
TCCTTCAATTTGTCTATATC+TGG 0.214976 tig0010241:-2267 None:intergenic
AATGATTTCAGATGTATATT+TGG 0.234059 tig0010241:+3363 Msa1348170:CDS
TGGATTCTTATATGGTAAAA+TGG 0.237622 tig0010241:+3130 Msa1348170:CDS
GTCCCAAATATTCGCATCTA+TGG 0.258743 tig0010241:+5360 Msa1348170:CDS
GACATGTTATTCCACAATTA+AGG 0.283706 tig0010241:-6192 None:intergenic
ACAGGCATTGGATTCTTATA+TGG 0.290323 tig0010241:+3122 Msa1348170:CDS
TCAATCTAGTAGCTTATTCT+TGG 0.296895 tig0010241:+1771 Msa1348170:CDS
AATTTATACTCGCAATAGTA+TGG 0.307512 tig0010241:+6301 Msa1348170:three_prime_UTR
ACTCTTAGTTCTCCCTCTTT+GGG 0.324312 tig0010241:+1383 Msa1348170:CDS
TTACTTCCTGGTGAAGTATA+GGG 0.324627 tig0010241:-1427 None:intergenic
AACCCCTCCATCGGTATTTA+GGG 0.335796 tig0010241:+5927 Msa1348170:CDS
AGTGATTGAACAGCAATAAC+TGG 0.340667 tig0010241:-1267 None:intergenic
TTAGGATTGGTTCAATTGAT+AGG 0.340879 tig0010241:+6105 Msa1348170:three_prime_UTR
GCAGCAATTGATTACTTGTC+TGG 0.346961 tig0010241:+3949 Msa1348170:CDS
ATACTTCACCAGGAAGTAAA+TGG 0.354665 tig0010241:+1431 Msa1348170:CDS
TCCATCGCCATTGGTTGGGT+TGG 0.374008 tig0010241:+763 Msa1348170:five_prime_UTR
TTTACTTCCTGGTGAAGTAT+AGG 0.375419 tig0010241:-1428 None:intergenic
ATTGGTGAAGCAATTGGATT+AGG 0.377119 tig0010241:+3925 Msa1348170:CDS
ATTGATTACTTGTCTGGGAT+TGG 0.379311 tig0010241:+3955 Msa1348170:CDS
CCATCGCCATTGGTTGGGTT+GGG 0.379491 tig0010241:+764 Msa1348170:five_prime_UTR
ATGAGATCAGCAAGAGGAAT+TGG 0.385117 tig0010241:-6142 None:intergenic
CCAGCTATTGGTGAAGCAAT+TGG 0.385593 tig0010241:+3919 Msa1348170:CDS
CCTGGTGAAGTATAGGGAAA+TGG 0.386768 tig0010241:-1421 None:intergenic
TAACTGGGGCTTGGAAGTTT+CGG 0.386871 tig0010241:-1251 None:intergenic
CAGTGTGCAATATCTCTAAT+AGG 0.390967 tig0010241:-2894 None:intergenic
TCTGACAAGTGATGTGGTTC+TGG 0.397087 tig0010241:-1291 None:intergenic
GCAAGTATGCAACTGTTAAC+TGG 0.400568 tig0010241:-794 None:intergenic
GCCCATAGATGCGAATATTT+GGG 0.403525 tig0010241:-5362 None:intergenic
CTGGTGAAGTATAGGGAAAT+GGG 0.406014 tig0010241:-1420 None:intergenic
CTATATCTGGAATTTCATCT+TGG 0.406188 tig0010241:-2254 None:intergenic
ATAGGAGAATTCCAAAATCT+TGG 0.408694 tig0010241:-1200 None:intergenic
TTACAATTCAAACGTGCATC+GGG 0.418015 tig0010241:+1538 Msa1348170:CDS
CAATCTAGTAGCTTATTCTT+GGG 0.419995 tig0010241:+1772 Msa1348170:CDS
GGTTTCCATCGCCATTGGTT+GGG 0.422201 tig0010241:+759 Msa1348170:five_prime_UTR
GAGGCTGGAACACCAGCTAT+TGG 0.422236 tig0010241:+3907 Msa1348170:CDS
TTGATTACTTGTCTGGGATT+GGG 0.425333 tig0010241:+3956 Msa1348170:CDS
TTGACGGTTGATGCACGAAC+AGG 0.429519 tig0010241:-1341 None:intergenic
TTGACTTCTTTCGAAGGGGC+TGG 0.434464 tig0010241:-5384 None:intergenic
CACAAACCTGGACGGAGGTT+CGG 0.435387 tig0010241:-3401 None:intergenic
TGCAACATTTCTGGACCAAC+AGG 0.438009 tig0010241:+5458 Msa1348170:CDS
AATGCCTTCACAACAGCTGC+AGG 0.442651 tig0010241:-1497 None:intergenic
CTCGTTTGACTTCTTTCGAA+GGG 0.444579 tig0010241:-5389 None:intergenic
TTACAGATGTGTGGGCCTAC+AGG 0.456863 tig0010241:+3104 Msa1348170:intron
TTCAGCTACTGCTTGATTGA+CGG 0.459909 tig0010241:-1357 None:intergenic
CCTTAGTGTTGTAGAAATAG+AGG 0.461757 tig0010241:-5973 None:intergenic
AAGTATAGGGAAATGGGGTC+TGG 0.471495 tig0010241:-1414 None:intergenic
CAAATGGTTTCCATCGCCAT+TGG 0.471565 tig0010241:+754 Msa1348170:five_prime_UTR
TAAATACCGATGGAGGGGTT+GGG 0.473325 tig0010241:-5924 None:intergenic
CATGGAGTGGCAATCAGATC+AGG 0.475274 tig0010241:+5890 Msa1348170:CDS
TTAAGGCCTACTGTAATTAG+TGG 0.475990 tig0010241:-6175 None:intergenic
TCCAGATATAGACAAATTGA+AGG 0.478567 tig0010241:+2266 Msa1348170:CDS
CTTCAATTCATTCAAGTAGT+CGG 0.482994 tig0010241:+6042 Msa1348170:exon
GACTGTACATCAGTTAGGAT+TGG 0.484410 tig0010241:+6092 Msa1348170:three_prime_UTR
AAAATGGAGGCATGGAAGAC+AGG 0.487304 tig0010241:-3157 None:intergenic
ACCACATCACTTGTCAGACT+TGG 0.489997 tig0010241:+1296 Msa1348170:CDS
GTGGAGAACAGCGGCGGCGA+GGG 0.491164 tig0010241:-886 None:intergenic
TCCATTGCTAACCACCCAAT+AGG 0.493901 tig0010241:-1218 None:intergenic
GAACAGCAATAACTGGGGCT+TGG 0.497888 tig0010241:-1260 None:intergenic
ATTTATGTGTTACAAAATGC+CGG 0.499401 tig0010241:+6227 Msa1348170:three_prime_UTR
TGGTTTCCATCGCCATTGGT+TGG 0.499995 tig0010241:+758 Msa1348170:five_prime_UTR
TCCTATTGGGTGGTTAGCAA+TGG 0.500044 tig0010241:+1217 Msa1348170:exon
CTCTTGCTGATCTCATAGAT+AGG 0.500389 tig0010241:+6149 Msa1348170:three_prime_UTR
ACTCACCTCATACTCATGTA+TGG 0.501136 tig0010241:-3986 None:intergenic
AGAAATGTTGCAAGATCAGT+AGG 0.504435 tig0010241:-5447 None:intergenic
CAGCAATTGATTACTTGTCT+GGG 0.508847 tig0010241:+3950 Msa1348170:CDS
TACCATACTAGATTTGAGGC+TGG 0.512947 tig0010241:+3892 Msa1348170:intron
GCAAGCCATACATGAGTATG+AGG 0.513803 tig0010241:+3981 Msa1348170:CDS
CTGACAGAAGCCTTTCATAC+AGG 0.515663 tig0010241:-5338 None:intergenic
ATGTGTGGGCCTACAGGCAT+TGG 0.516246 tig0010241:+3110 Msa1348170:CDS
CATCATGTTTCAAATGTGCT+TGG 0.517203 tig0010241:+2324 Msa1348170:CDS
CTAAATACCGATGGAGGGGT+TGG 0.521306 tig0010241:-5925 None:intergenic
CCATTTCCCTATACTTCACC+AGG 0.523096 tig0010241:+1421 Msa1348170:CDS
GATATTGCACACTGGGCACA+TGG 0.530497 tig0010241:+2903 Msa1348170:CDS
TCCCAAATATTCGCATCTAT+GGG 0.531604 tig0010241:+5361 Msa1348170:CDS
CCAATTGCTTCACCAATAGC+TGG 0.533136 tig0010241:-3919 None:intergenic
GTGATTGAACAGCAATAACT+GGG 0.535039 tig0010241:-1266 None:intergenic
CACGTGTCGGATCAAGCAAA+TGG 0.535997 tig0010241:+738 Msa1348170:five_prime_UTR
GCACACTGGGCACATGGGGT+TGG 0.536529 tig0010241:+2909 Msa1348170:CDS
TTATGATGATCAGAGCTTAG+TGG 0.536844 tig0010241:-905 None:intergenic
GAACAGGGAGATAAGTTAAA+CGG 0.538325 tig0010241:-1325 None:intergenic
TGAACATCAACCACCATGTG+TGG 0.542670 tig0010241:-2966 None:intergenic
GTTACAATTCAAACGTGCAT+CGG 0.544500 tig0010241:+1537 Msa1348170:CDS
CTTATGCCGAACCTCCGTCC+AGG 0.545005 tig0010241:+3395 Msa1348170:CDS
ATCATAATTCAATTCATACT+AGG 0.547474 tig0010241:+921 Msa1348170:five_prime_UTR
GGAAATGGGGTCTGGTAGTG+TGG 0.550619 tig0010241:-1406 None:intergenic
TGGGTACATACCTGTATGAA+AGG 0.550622 tig0010241:+5328 Msa1348170:CDS
GCATTGCAAGACTATTATGA+AGG 0.553126 tig0010241:+1515 Msa1348170:CDS
TATTAGAGATATTGCACACT+GGG 0.555135 tig0010241:+2896 Msa1348170:CDS
CCTCTATTTCTACAACACTA+AGG 0.555763 tig0010241:+5973 Msa1348170:CDS
TCTTGTTGCTTCTTCTCACA+AGG 0.556164 tig0010241:+3007 Msa1348170:CDS
AATCTAGTAGCTTATTCTTG+GGG 0.557727 tig0010241:+1773 Msa1348170:CDS
CAACAAGAAAATCAGCATCA+AGG 0.558160 tig0010241:-2992 None:intergenic
CCCAACCCAACCAATGGCGA+TGG 0.558816 tig0010241:-764 None:intergenic
AGAAGTTGACCGTGTCATGA+AGG 0.561968 tig0010241:-6021 None:intergenic
CATTTGCTTGATCCGACACG+TGG 0.567329 tig0010241:-737 None:intergenic
GAAGTTGACCGTGTCATGAA+GGG 0.567742 tig0010241:-6020 None:intergenic
TATGGTGTACTCTTTCACAC+TGG 0.567865 tig0010241:+6319 Msa1348170:three_prime_UTR
GAAGCCTGCAGCTGTTGTGA+AGG 0.567977 tig0010241:+1493 Msa1348170:CDS
GCTCGTTTGACTTCTTTCGA+AGG 0.577103 tig0010241:-5390 None:intergenic
GTGTTGCAGCAAATGTATAC+CGG 0.577878 tig0010241:-6246 None:intergenic
CTGGTAGTGTGGCCCAAAGA+GGG 0.578324 tig0010241:-1395 None:intergenic
ATTACAGTAGGCCTTAATTG+TGG 0.580967 tig0010241:+6181 Msa1348170:three_prime_UTR
TGACCCCTAAATACCGATGG+AGG 0.582901 tig0010241:-5931 None:intergenic
TTTGGAATTCTCCTATTGGG+TGG 0.589480 tig0010241:+1207 Msa1348170:five_prime_UTR
ACCCCTAAATACCGATGGAG+GGG 0.591422 tig0010241:-5929 None:intergenic
CATGTGTGGAACACTCTGGC+AGG 0.593828 tig0010241:-2952 None:intergenic
GGCTTGTCAAATTTAAAACA+AGG 0.594239 tig0010241:+1794 Msa1348170:CDS
GACCCCTAAATACCGATGGA+GGG 0.595603 tig0010241:-5930 None:intergenic
ATCACAGCGCAATTGTTCCA+TGG 0.596198 tig0010241:+2181 Msa1348170:CDS
CTGCCAGAGTGTTCCACACA+TGG 0.600132 tig0010241:+2953 Msa1348170:CDS
TCTGGTAGTGTGGCCCAAAG+AGG 0.600966 tig0010241:-1396 None:intergenic
TGACCGTGTCATGAAGGGCA+TGG 0.603142 tig0010241:-6015 None:intergenic
CATTGACCCCTAAATACCGA+TGG 0.603227 tig0010241:-5934 None:intergenic
TATCCATGCCCTTCATGACA+CGG 0.605173 tig0010241:+6012 Msa1348170:CDS
TCGTTTGACTTCTTTCGAAG+GGG 0.606212 tig0010241:-5388 None:intergenic
AACCTGTCTTACAGATGTGT+GGG 0.606697 tig0010241:+3096 Msa1348170:intron
GAACCTGTCTTACAGATGTG+TGG 0.607400 tig0010241:+3095 Msa1348170:intron
ATTGTGCCCAACCCCTCCAT+CGG 0.607814 tig0010241:+5918 Msa1348170:CDS
AGTGGAGAACAGCGGCGGCG+AGG 0.608765 tig0010241:-887 None:intergenic
AAAGAGGGAGAACTAAGAGT+TGG 0.613517 tig0010241:-1380 None:intergenic
TATTGCACACTGGGCACATG+GGG 0.615050 tig0010241:+2905 Msa1348170:CDS
CCACCATGTGTGGAACACTC+TGG 0.619780 tig0010241:-2956 None:intergenic
AGGCATCCACTAATTACAGT+AGG 0.623139 tig0010241:+6169 Msa1348170:three_prime_UTR
TGACGGTTGATGCACGAACA+GGG 0.628972 tig0010241:-1340 None:intergenic
GATGGAGGGGTTGGGCACAA+TGG 0.630626 tig0010241:-5916 None:intergenic
AAATTTAAAACAAGGAGATG+AGG 0.633993 tig0010241:+1802 Msa1348170:CDS
TATTTATGGATGTAGTGCAA+AGG 0.635359 tig0010241:+1649 Msa1348170:intron
CTATTAGAGATATTGCACAC+TGG 0.643145 tig0010241:+2895 Msa1348170:CDS
ATATTGCACACTGGGCACAT+GGG 0.643244 tig0010241:+2904 Msa1348170:CDS
GCCAAGTCTGACAAGTGATG+TGG 0.644516 tig0010241:-1297 None:intergenic
AGCTGATTCATACTCGTCTG+TGG 0.647061 tig0010241:-1672 None:intergenic
ACGAGTATGAATCAGCTAGA+CGG 0.649988 tig0010241:+1678 Msa1348170:CDS
CTATCTATGAGATCAGCAAG+AGG 0.652182 tig0010241:-6148 None:intergenic
AGCTTAGTGGAGAACAGCGG+CGG 0.652892 tig0010241:-892 None:intergenic
ATCGGGGCATACATTACTTG+AGG 0.654297 tig0010241:+1555 Msa1348170:CDS
TGGTGAAGTATAGGGAAATG+GGG 0.664059 tig0010241:-1419 None:intergenic
TATAAGAATCCAATGCCTGT+AGG 0.671673 tig0010241:-3119 None:intergenic
GTATGAATCAGCTAGACGGA+AGG 0.672338 tig0010241:+1682 Msa1348170:CDS
ACCCCTCCATCGGTATTTAG+GGG 0.674227 tig0010241:+5928 Msa1348170:CDS
CTATTTCTACAACACTAAGG+AGG 0.678567 tig0010241:+5976 Msa1348170:CDS
GAAATGTTGCAAGATCAGTA+GGG 0.688737 tig0010241:-5446 None:intergenic
ATGGAGGCATGGAAGACAGG+AGG 0.692069 tig0010241:-3154 None:intergenic
CCAGAGTGTTCCACACATGG+TGG 0.696122 tig0010241:+2956 Msa1348170:CDS
AAGTTCACAAACCTGGACGG+AGG 0.708907 tig0010241:-3406 None:intergenic
TACAATTCAAACGTGCATCG+GGG 0.710508 tig0010241:+1539 Msa1348170:CDS
CAGAGCTTAGTGGAGAACAG+CGG 0.747768 tig0010241:-895 None:intergenic
CAGGGAGATAAGTTAAACGG+CGG 0.749242 tig0010241:-1322 None:intergenic
TGATTGAACAGCAATAACTG+GGG 0.771247 tig0010241:-1265 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTTTATTTAATTCCATTT+TGG + tig0010241:961-980 Msa1348170:intron 10.0%
!!! TAAACAATTTTTTATGAAAA+AGG + tig0010241:5552-5571 Msa1348170:intron 10.0%
!!! TTATTCATAAACTTTTATAT+AGG + tig0010241:5637-5656 Msa1348170:intron 10.0%
!!! GGCTATTTATTTTATTATTA+TGG - tig0010241:692-711 None:intergenic 15.0%
!! AATAAATAGCCAATAAAAAT+TGG + tig0010241:701-720 Msa1348170:five_prime_UTR 15.0%
!!! ATTATTGTGTTTGTTAAATT+TGG + tig0010241:1583-1602 Msa1348170:intron 15.0%
!! TCATGTTTAAAAATTTAGAT+GGG - tig0010241:1926-1945 None:intergenic 15.0%
!! ATCATGTTTAAAAATTTAGA+TGG - tig0010241:1927-1946 None:intergenic 15.0%
!! TATAATAACTTACCTAAAAA+TGG - tig0010241:3176-3195 None:intergenic 15.0%
!! AAAACAAAATCTTATTAACA+TGG - tig0010241:3289-3308 None:intergenic 15.0%
!!! TGTATATCATTTTTAAGATA+AGG - tig0010241:3454-3473 None:intergenic 15.0%
!! ATCTTAAAAATGATATACAT+TGG + tig0010241:3455-3474 Msa1348170:intron 15.0%
!! GGTTATATTAAATTTAGAAA+AGG - tig0010241:3758-3777 None:intergenic 15.0%
!! ATCATAATTCAATTCATACT+AGG + tig0010241:921-940 Msa1348170:five_prime_UTR 20.0%
!!! TGTTAAATTTGGAATTACAT+TGG + tig0010241:1594-1613 Msa1348170:intron 20.0%
!! TTTATGTGCACAATTATTTA+TGG + tig0010241:1635-1654 Msa1348170:intron 20.0%
!! CATGTTTAAAAATTTAGATG+GGG - tig0010241:1925-1944 None:intergenic 20.0%
!!! TTGTGCATATTTTTAAGATT+CGG + tig0010241:1953-1972 Msa1348170:intron 20.0%
!! ATCAAATGTGATATTGAAAT+AGG + tig0010241:2001-2020 Msa1348170:intron 20.0%
!!! TTTTACATGAGCATATTTAT+TGG - tig0010241:2114-2133 None:intergenic 20.0%
!!! TTTATAGGTTTTGACATTAA+CGG + tig0010241:2428-2447 Msa1348170:intron 20.0%
!! ATTTCCAATATTCAACTATA+AGG + tig0010241:2592-2611 Msa1348170:intron 20.0%
!! TTTCCAATATTCAACTATAA+GGG + tig0010241:2593-2612 Msa1348170:intron 20.0%
!!! ACCAAGTTTAAATGTTTTTA+GGG - tig0010241:2701-2720 None:intergenic 20.0%
!! TTTAGGTAAGTTATTATACA+CGG + tig0010241:3178-3197 Msa1348170:intron 20.0%
!! AATGATTTCAGATGTATATT+TGG + tig0010241:3363-3382 Msa1348170:CDS 20.0%
!! GTATCTTATTATTATATCTG+AGG + tig0010241:3863-3882 Msa1348170:intron 20.0%
!! ATTATAACGATAACATTGAA+GGG - tig0010241:4921-4940 None:intergenic 20.0%
!! AATTATAACGATAACATTGA+AGG - tig0010241:4922-4941 None:intergenic 20.0%
!! AAAATCATTAATTTAGCTAG+TGG - tig0010241:4949-4968 None:intergenic 20.0%
!!! TTTGTAACACATAAATTTTC+AGG - tig0010241:6223-6242 None:intergenic 20.0%
!! AAAGTCGAACCAATTTTTAT+TGG - tig0010241:713-732 None:intergenic 25.0%
!! TCAATGAATTTAGAGTAGAA+AGG - tig0010241:994-1013 None:intergenic 25.0%
!!! TTTTTTCTTAGCCAAGATTT+TGG + tig0010241:1189-1208 Msa1348170:five_prime_UTR 25.0%
!! TTGGAATTACATTGGTAATT+TGG + tig0010241:1602-1621 Msa1348170:intron 25.0%
! TAATTGTGCACATAAACATT+TGG - tig0010241:1631-1650 None:intergenic 25.0%
!! AAATTTAAAACAAGGAGATG+AGG + tig0010241:1802-1821 Msa1348170:CDS 25.0%
! AAGTTCTATTCCTTTATGTT+TGG + tig0010241:2075-2094 Msa1348170:intron 25.0%
! TAATGACAATCCAAACATAA+AGG - tig0010241:2088-2107 None:intergenic 25.0%
! TTACATACACTCATATAAAG+AGG + tig0010241:2569-2588 Msa1348170:intron 25.0%
! ACCCTAAAAACATTTAAACT+TGG + tig0010241:2697-2716 Msa1348170:intron 25.0%
!! CACCAAGTTTAAATGTTTTT+AGG - tig0010241:2702-2721 None:intergenic 25.0%
! AAAAACCATTGAAACAATTG+GGG - tig0010241:2757-2776 None:intergenic 25.0%
! GAAAAACCATTGAAACAATT+GGG - tig0010241:2758-2777 None:intergenic 25.0%
! TGAAAAACCATTGAAACAAT+TGG - tig0010241:2759-2778 None:intergenic 25.0%
! TGGATTCTTATATGGTAAAA+TGG + tig0010241:3130-3149 Msa1348170:CDS 25.0%
! AATAACTTACCTAAAAATGG+AGG - tig0010241:3173-3192 None:intergenic 25.0%
! ACATGAACAACTAGTTAAAA+TGG + tig0010241:3226-3245 Msa1348170:intron 25.0%
! AGAAAAAATCCTGTTTGTTT+AGG + tig0010241:3261-3280 Msa1348170:intron 25.0%
!! TTTTGTAGCTAATACATTTC+CGG + tig0010241:3305-3324 Msa1348170:intron 25.0%
!! AAAAATGATATACATTGGCT+TGG + tig0010241:3460-3479 Msa1348170:intron 25.0%
!!! AAAATGATATACATTGGCTT+GGG + tig0010241:3461-3480 Msa1348170:intron 25.0%
!!! TTTTGGTTATAGAATCCTAT+GGG - tig0010241:3633-3652 None:intergenic 25.0%
!!! TTTTTGGTTATAGAATCCTA+TGG - tig0010241:3634-3653 None:intergenic 25.0%
!!! TGGTAGATCGAATAATTTTT+TGG - tig0010241:3650-3669 None:intergenic 25.0%
! ATTGACAACGATCATTTAAA+TGG - tig0010241:3670-3689 None:intergenic 25.0%
! GATACAATACAAGTAATTGA+TGG - tig0010241:3848-3867 None:intergenic 25.0%
!! ATTTTACCATACTAGATTTG+AGG + tig0010241:3888-3907 Msa1348170:intron 25.0%
! TTTATAGTCAATAAGACTGA+AGG - tig0010241:4015-4034 None:intergenic 25.0%
! AAATCAACTAAATCATAACG+AGG - tig0010241:4223-4242 None:intergenic 25.0%
! AAATACAAGAATAAACCACA+GGG - tig0010241:4428-4447 None:intergenic 25.0%
! TAAATACAAGAATAAACCAC+AGG - tig0010241:4429-4448 None:intergenic 25.0%
! AAGATTCACTTCTAATCATT+TGG + tig0010241:4479-4498 Msa1348170:intron 25.0%
! AGATTCACTTCTAATCATTT+GGG + tig0010241:4480-4499 Msa1348170:intron 25.0%
!! AGCTTAACTACAAGTTATTT+TGG - tig0010241:4653-4672 None:intergenic 25.0%
! AATATACATTAATGAGGTTG+AGG - tig0010241:4871-4890 None:intergenic 25.0%
!! GCTTTGAATATACATTAATG+AGG - tig0010241:4877-4896 None:intergenic 25.0%
! TTATTAGGTGAAAACAATGT+AGG + tig0010241:5097-5116 Msa1348170:intron 25.0%
! AAATTTGGATGTCATACAAA+TGG - tig0010241:5295-5314 None:intergenic 25.0%
!! TATGACATCCAAATTTTCAT+AGG + tig0010241:5299-5318 Msa1348170:intron 25.0%
! AATAAGTTAAAAACAACCCA+TGG + tig0010241:5660-5679 Msa1348170:intron 25.0%
! TAATTGATTACAGACTAAGA+AGG - tig0010241:5776-5795 None:intergenic 25.0%
!! TACTAAATTGCCCAAATTTT+CGG + tig0010241:5794-5813 Msa1348170:intron 25.0%
! ATTTATGTGTTACAAAATGC+CGG + tig0010241:6227-6246 Msa1348170:three_prime_UTR 25.0%
! AATTTATACTCGCAATAGTA+TGG + tig0010241:6301-6320 Msa1348170:three_prime_UTR 25.0%
! AATTTAGAGTAGAAAGGAGA+GGG - tig0010241:988-1007 None:intergenic 30.0%
GAAGAGAAACATTAAAGAGT+CGG - tig0010241:1146-1165 None:intergenic 30.0%
ATAGGAGAATTCCAAAATCT+TGG - tig0010241:1203-1222 None:intergenic 30.0%
!!! AGATTTTGGAATTCTCCTAT+TGG + tig0010241:1203-1222 Msa1348170:five_prime_UTR 30.0%
!!! GATTTTGGAATTCTCCTATT+GGG + tig0010241:1204-1223 Msa1348170:five_prime_UTR 30.0%
! GAATTACATTGGTAATTTGG+AGG + tig0010241:1605-1624 Msa1348170:intron 30.0%
TATTTATGGATGTAGTGCAA+AGG + tig0010241:1649-1668 Msa1348170:intron 30.0%
TCAATCTAGTAGCTTATTCT+TGG + tig0010241:1771-1790 Msa1348170:CDS 30.0%
CAATCTAGTAGCTTATTCTT+GGG + tig0010241:1772-1791 Msa1348170:CDS 30.0%
AATCTAGTAGCTTATTCTTG+GGG + tig0010241:1773-1792 Msa1348170:CDS 30.0%
! GGCTTGTCAAATTTAAAACA+AGG + tig0010241:1794-1813 Msa1348170:CDS 30.0%
!!! ATGTTTGGATTAGCGTATTT+TGG + tig0010241:1868-1887 Msa1348170:intron 30.0%
!! GAAATAGGAGTTTTAATACC+AGG + tig0010241:2016-2035 Msa1348170:intron 30.0%
TAAAGGAATAGAACTTCAAC+CGG - tig0010241:2071-2090 None:intergenic 30.0%
CAATTAGTAGCTCAAAAAGT+TGG + tig0010241:2204-2223 Msa1348170:CDS 30.0%
! CTATATCTGGAATTTCATCT+TGG - tig0010241:2257-2276 None:intergenic 30.0%
TCCAGATATAGACAAATTGA+AGG + tig0010241:2266-2285 Msa1348170:CDS 30.0%
TCCTTCAATTTGTCTATATC+TGG - tig0010241:2270-2289 None:intergenic 30.0%
AAAAGTTTCTGTATTCGTAC+TGG - tig0010241:2512-2531 None:intergenic 30.0%
AGTCCCTTATAGTTGAATAT+TGG - tig0010241:2599-2618 None:intergenic 30.0%
AAAACCATTGAAACAATTGG+GGG - tig0010241:2756-2775 None:intergenic 30.0%
CTATCATTGTGGAAAATAAG+AGG - tig0010241:2790-2809 None:intergenic 30.0%
!! GAGTAAAAGTACTATCATTG+TGG - tig0010241:2801-2820 None:intergenic 30.0%
TATTAGAGATATTGCACACT+GGG + tig0010241:2896-2915 Msa1348170:CDS 30.0%
ACTAGTTGTTCATGTTTGAT+AGG - tig0010241:3221-3240 None:intergenic 30.0%
GAAAAAAAAGTTCACAAACC+TGG - tig0010241:3416-3435 None:intergenic 30.0%
TTTGGTTATAGAATCCTATG+GGG - tig0010241:3632-3651 None:intergenic 30.0%
AGAGTTTCCATTTCTTATCT+TGG + tig0010241:3709-3728 Msa1348170:intron 30.0%
GAGTTTCCATTTCTTATCTT+GGG + tig0010241:3710-3729 Msa1348170:intron 30.0%
AAATGACTGTAGGTTATGAA+TGG - tig0010241:3779-3798 None:intergenic 30.0%
AGAAAACTAGAGTAATTCAC+AGG + tig0010241:4034-4053 Msa1348170:intron 30.0%
AAGAGGATAGTAAAGTAAAC+GGG - tig0010241:4104-4123 None:intergenic 30.0%
GAAGAGGATAGTAAAGTAAA+CGG - tig0010241:4105-4124 None:intergenic 30.0%
!! GGTATCATCTTTTGAAAATC+TGG + tig0010241:4294-4313 Msa1348170:intron 30.0%
CATTAGATGGTTAAGCAAAT+TGG - tig0010241:4324-4343 None:intergenic 30.0%
!! TTGGCTTTATTGTCATTAGA+TGG - tig0010241:4337-4356 None:intergenic 30.0%
CAATCAATACATTAAGTGCT+TGG - tig0010241:4356-4375 None:intergenic 30.0%
CTGATCAAGTTAAACATTGT+CGG - tig0010241:4708-4727 None:intergenic 30.0%
GAAGAAGTAAAACAACAATC+AGG - tig0010241:4805-4824 None:intergenic 30.0%
! CAAAATCAGTTTTCATACAG+AGG + tig0010241:5027-5046 Msa1348170:intron 30.0%
CTAACACTCACTTTCTTATT+AGG + tig0010241:5082-5101 Msa1348170:intron 30.0%
TTGTTGGGTTAAATCAATGT+AGG - tig0010241:5163-5182 None:intergenic 30.0%
CTAACACTTATTCTCTTGTT+GGG - tig0010241:5178-5197 None:intergenic 30.0%
TCTAACACTTATTCTCTTGT+TGG - tig0010241:5179-5198 None:intergenic 30.0%
TATTTCATCTTCTTACCTGT+TGG - tig0010241:5476-5495 None:intergenic 30.0%
AACAAGAAAATGCATATAGC+TGG - tig0010241:5505-5524 None:intergenic 30.0%
TTAACTAATGACATGTCCAT+GGG - tig0010241:5679-5698 None:intergenic 30.0%
ATTAACTAATGACATGTCCA+TGG - tig0010241:5680-5699 None:intergenic 30.0%
AGTGTCTATGTCATGAAATA+AGG + tig0010241:5729-5748 Msa1348170:intron 30.0%
CCAATTACTACCGAAAATTT+GGG - tig0010241:5807-5826 None:intergenic 30.0%
TCCAATTACTACCGAAAATT+TGG - tig0010241:5808-5827 None:intergenic 30.0%
ACATCATCGAAATTCAAGAA+AGG - tig0010241:5859-5878 None:intergenic 30.0%
! ATGATGTATCATTTTCAGCA+TGG + tig0010241:5872-5891 Msa1348170:intron 30.0%
CTTCAATTCATTCAAGTAGT+CGG + tig0010241:6042-6061 Msa1348170:exon 30.0%
!!! ATTTTGACTGTACATCAGTT+AGG + tig0010241:6087-6106 Msa1348170:three_prime_UTR 30.0%
!! TTAGGATTGGTTCAATTGAT+AGG + tig0010241:6105-6124 Msa1348170:three_prime_UTR 30.0%
GACATGTTATTCCACAATTA+AGG - tig0010241:6195-6214 None:intergenic 30.0%
!! GTAACACATAAATTTTCAGG+AGG - tig0010241:6220-6239 None:intergenic 30.0%
TTATGATGATCAGAGCTTAG+TGG - tig0010241:908-927 None:intergenic 35.0%
! GAATTTAGAGTAGAAAGGAG+AGG - tig0010241:989-1008 None:intergenic 35.0%
!! ATAAAAGTTTTGACCAGGGT+GGG - tig0010241:1038-1057 None:intergenic 35.0%
!! AGCCATAAAAGTTTTGACCA+GGG - tig0010241:1042-1061 None:intergenic 35.0%
!! TAGCCATAAAAGTTTTGACC+AGG - tig0010241:1043-1062 None:intergenic 35.0%
AATCATGCAACAAACACCAT+CGG - tig0010241:1099-1118 None:intergenic 35.0%
TGATTGAACAGCAATAACTG+GGG - tig0010241:1268-1287 None:intergenic 35.0%
GTGATTGAACAGCAATAACT+GGG - tig0010241:1269-1288 None:intergenic 35.0%
AGTGATTGAACAGCAATAAC+TGG - tig0010241:1270-1289 None:intergenic 35.0%
GAACAGGGAGATAAGTTAAA+CGG - tig0010241:1328-1347 None:intergenic 35.0%
TTACTTCCTGGTGAAGTATA+GGG - tig0010241:1430-1449 None:intergenic 35.0%
TTTACTTCCTGGTGAAGTAT+AGG - tig0010241:1431-1450 None:intergenic 35.0%
ATACTTCACCAGGAAGTAAA+TGG + tig0010241:1431-1450 Msa1348170:CDS 35.0%
GCATTGCAAGACTATTATGA+AGG + tig0010241:1515-1534 Msa1348170:CDS 35.0%
GTTACAATTCAAACGTGCAT+CGG + tig0010241:1537-1556 Msa1348170:CDS 35.0%
TTACAATTCAAACGTGCATC+GGG + tig0010241:1538-1557 Msa1348170:CDS 35.0%
!! ATTTCAACTTGCTGCATGTT+TGG + tig0010241:1853-1872 Msa1348170:intron 35.0%
!! TTAAGATTCGGAGAGTGTTA+AGG + tig0010241:1965-1984 Msa1348170:intron 35.0%
!! ATAGGAGTTTTAATACCAGG+AGG + tig0010241:2019-2038 Msa1348170:intron 35.0%
AAAGGAATAGAACTTCAACC+GGG - tig0010241:2070-2089 None:intergenic 35.0%
! TTTTGAGCTACTAATTGCCA+TGG - tig0010241:2201-2220 None:intergenic 35.0%
CATCATGTTTCAAATGTGCT+TGG + tig0010241:2324-2343 Msa1348170:CDS 35.0%
! TTTTGACATTAACGGTCTTC+TGG + tig0010241:2436-2455 Msa1348170:intron 35.0%
! CATGTTTGCTAAGTACTAGT+CGG - tig0010241:2640-2659 None:intergenic 35.0%
TATTGGGTCTCAATATGCAT+AGG - tig0010241:2668-2687 None:intergenic 35.0%
!!! AATGTTTTTAGGGTCACGTT+GGG - tig0010241:2691-2710 None:intergenic 35.0%
!!! AAATGTTTTTAGGGTCACGT+TGG - tig0010241:2692-2711 None:intergenic 35.0%
CAGTGTGCAATATCTCTAAT+AGG - tig0010241:2897-2916 None:intergenic 35.0%
CTATTAGAGATATTGCACAC+TGG + tig0010241:2895-2914 Msa1348170:CDS 35.0%
CAACAAGAAAATCAGCATCA+AGG - tig0010241:2995-3014 None:intergenic 35.0%
TATAAGAATCCAATGCCTGT+AGG - tig0010241:3122-3141 None:intergenic 35.0%
!! ACAGGCATTGGATTCTTATA+TGG + tig0010241:3122-3141 Msa1348170:CDS 35.0%
AAAAAGTTCACAAACCTGGA+CGG - tig0010241:3412-3431 None:intergenic 35.0%
!! ATTGGTATTTTGAACCCCAT+AGG + tig0010241:3615-3634 Msa1348170:intron 35.0%
ATCAGTCCCAAGATAAGAAA+TGG - tig0010241:3719-3738 None:intergenic 35.0%
AAAAAATTAGCACTGTGAGG+CGG - tig0010241:3806-3825 None:intergenic 35.0%
AGCAAAAAATTAGCACTGTG+AGG - tig0010241:3809-3828 None:intergenic 35.0%
ATTGGTGAAGCAATTGGATT+AGG + tig0010241:3925-3944 Msa1348170:CDS 35.0%
CAGCAATTGATTACTTGTCT+GGG + tig0010241:3950-3969 Msa1348170:CDS 35.0%
! ATTGATTACTTGTCTGGGAT+TGG + tig0010241:3955-3974 Msa1348170:CDS 35.0%
! TTGATTACTTGTCTGGGATT+GGG + tig0010241:3956-3975 Msa1348170:CDS 35.0%
TACTTTACTATCCTCTTCTG+TGG + tig0010241:4107-4126 Msa1348170:intron 35.0%
!! TGAAGCTTTTTCTCCTTCAT+GGG + tig0010241:4273-4292 Msa1348170:intron 35.0%
TCAAAAGATGATACCCATGA+AGG - tig0010241:4289-4308 None:intergenic 35.0%
CAACAATCAGGATGACAAAA+TGG - tig0010241:4793-4812 None:intergenic 35.0%
! TTTTCATACAGAGGATTGCT+AGG + tig0010241:5036-5055 Msa1348170:intron 35.0%
TAGGTCCTACTACTTTATGT+GGG + tig0010241:5116-5135 Msa1348170:intron 35.0%
! AAATTTTCATAGGTCGAGCT+GGG + tig0010241:5309-5328 Msa1348170:intron 35.0%
TCCCAAATATTCGCATCTAT+GGG + tig0010241:5361-5380 Msa1348170:CDS 35.0%
GAAATGTTGCAAGATCAGTA+GGG - tig0010241:5449-5468 None:intergenic 35.0%
AGAAATGTTGCAAGATCAGT+AGG - tig0010241:5450-5469 None:intergenic 35.0%
TACTGATCTTGCAACATTTC+TGG + tig0010241:5449-5468 Msa1348170:CDS 35.0%
! CCCAAATTTTCGGTAGTAAT+TGG + tig0010241:5804-5823 Msa1348170:intron 35.0%
ATTGGAATAGCTGTTGAACT+TGG + tig0010241:5822-5841 Msa1348170:intron 35.0%
CCTTAGTGTTGTAGAAATAG+AGG - tig0010241:5976-5995 None:intergenic 35.0%
!! CCTCTATTTCTACAACACTA+AGG + tig0010241:5973-5992 Msa1348170:CDS 35.0%
!! CTATTTCTACAACACTAAGG+AGG + tig0010241:5976-5995 Msa1348170:CDS 35.0%
TTAAGGCCTACTGTAATTAG+TGG - tig0010241:6178-6197 None:intergenic 35.0%
ATTACAGTAGGCCTTAATTG+TGG + tig0010241:6181-6200 Msa1348170:three_prime_UTR 35.0%
! TTTTAACCCAACCCAACCAA+TGG - tig0010241:773-792 None:intergenic 40.0%
GCAAGTATGCAACTGTTAAC+TGG - tig0010241:797-816 None:intergenic 40.0%
!! CATAAAAGTTTTGACCAGGG+TGG - tig0010241:1039-1058 None:intergenic 40.0%
! CACCCTGGTCAAAACTTTTA+TGG + tig0010241:1037-1056 Msa1348170:intron 40.0%
CAATTCACTGCTGCAAGTTA+AGG - tig0010241:1070-1089 None:intergenic 40.0%
CAGTGAATTGAATTTCCCGA+TGG + tig0010241:1080-1099 Msa1348170:intron 40.0%
ATCATGCAACAAACACCATC+GGG - tig0010241:1098-1117 None:intergenic 40.0%
! TTTGGAATTCTCCTATTGGG+TGG + tig0010241:1207-1226 Msa1348170:five_prime_UTR 40.0%
TTCAGCTACTGCTTGATTGA+CGG - tig0010241:1360-1379 None:intergenic 40.0%
AAAGAGGGAGAACTAAGAGT+TGG - tig0010241:1383-1402 None:intergenic 40.0%
! AACTCTTAGTTCTCCCTCTT+TGG + tig0010241:1382-1401 Msa1348170:CDS 40.0%
! ACTCTTAGTTCTCCCTCTTT+GGG + tig0010241:1383-1402 Msa1348170:CDS 40.0%
TGGTGAAGTATAGGGAAATG+GGG - tig0010241:1422-1441 None:intergenic 40.0%
CTGGTGAAGTATAGGGAAAT+GGG - tig0010241:1423-1442 None:intergenic 40.0%
!! GTTTTGAGCCATTTACTTCC+TGG - tig0010241:1442-1461 None:intergenic 40.0%
TACAATTCAAACGTGCATCG+GGG + tig0010241:1539-1558 Msa1348170:CDS 40.0%
ACGAGTATGAATCAGCTAGA+CGG + tig0010241:1678-1697 Msa1348170:CDS 40.0%
TTAATACCAGGAGGAGACAT+TGG + tig0010241:2028-2047 Msa1348170:intron 40.0%
TAATACCAGGAGGAGACATT+GGG + tig0010241:2029-2048 Msa1348170:intron 40.0%
ACCTATAAAGTTAACCCAGC+AGG - tig0010241:2417-2436 None:intergenic 40.0%
TTGAATCAACGTTGCATCGA+GGG + tig0010241:2477-2496 Msa1348170:intron 40.0%
CAGAAGCTACAGAAAAGCAA+AGG - tig0010241:2869-2888 None:intergenic 40.0%
! TCTTGTTGCTTCTTCTCACA+AGG + tig0010241:3007-3026 Msa1348170:CDS 40.0%
!! AGTAACTTGTTACACTGGTC+TGG - tig0010241:3075-3094 None:intergenic 40.0%
!! GGTTCAGTAACTTGTTACAC+TGG - tig0010241:3080-3099 None:intergenic 40.0%
AACCTGTCTTACAGATGTGT+GGG + tig0010241:3096-3115 Msa1348170:intron 40.0%
!! TCTTCCATGCCTCCATTTTT+AGG + tig0010241:3161-3180 Msa1348170:CDS 40.0%
CTTACCTAAAAATGGAGGCA+TGG - tig0010241:3168-3187 None:intergenic 40.0%
AACATGGTGCCTAAACAAAC+AGG - tig0010241:3273-3292 None:intergenic 40.0%
CCTGAAACAAGCAAAAGATG+AGG - tig0010241:3334-3353 None:intergenic 40.0%
! CCTCATCTTTTGCTTGTTTC+AGG + tig0010241:3331-3350 Msa1348170:intron 40.0%
! CATCTTTTGCTTGTTTCAGG+CGG + tig0010241:3334-3353 Msa1348170:intron 40.0%
!! ATGATATACATTGGCTTGGG+TGG + tig0010241:3464-3483 Msa1348170:intron 40.0%
TCAGCTTTCTTTCCTACACA+GGG - tig0010241:3507-3526 None:intergenic 40.0%
TTCAGCTTTCTTTCCTACAC+AGG - tig0010241:3508-3527 None:intergenic 40.0%
TGTAGGAAAGAAAGCTGAAG+AGG + tig0010241:3509-3528 Msa1348170:intron 40.0%
AGAAAGCTGAAGAGGATCAA+TGG + tig0010241:3517-3536 Msa1348170:intron 40.0%
TGGCTCTTGATGTTAGTCAT+TGG + tig0010241:3597-3616 Msa1348170:intron 40.0%
TGATCGTTGTCAATATCAGC+CGG + tig0010241:3676-3695 Msa1348170:intron 40.0%
TTATCTTGGGACTGATACTC+TGG + tig0010241:3723-3742 Msa1348170:intron 40.0%
! TACCATACTAGATTTGAGGC+TGG + tig0010241:3892-3911 Msa1348170:intron 40.0%
TTCCAGCCTCAAATCTAGTA+TGG - tig0010241:3897-3916 None:intergenic 40.0%
GCAGCAATTGATTACTTGTC+TGG + tig0010241:3949-3968 Msa1348170:CDS 40.0%
ACTCACCTCATACTCATGTA+TGG - tig0010241:3989-4008 None:intergenic 40.0%
! TACAGAAGGTATGGCATTTG+AGG - tig0010241:4248-4267 None:intergenic 40.0%
TTCAGCATCTACAGAAGGTA+TGG - tig0010241:4257-4276 None:intergenic 40.0%
AAAGCTTCAGCATCTACAGA+AGG - tig0010241:4262-4281 None:intergenic 40.0%
!! CTGAAGCTTTTTCTCCTTCA+TGG + tig0010241:4272-4291 Msa1348170:intron 40.0%
! AGAATAAACCACAGGGTGTT+TGG - tig0010241:4421-4440 None:intergenic 40.0%
TTCTAATCATTTGGGAGCTG+TGG + tig0010241:4488-4507 Msa1348170:intron 40.0%
GTAGGTCCTACTACTTTATG+TGG + tig0010241:5115-5134 Msa1348170:intron 40.0%
! AGGTCCAGCACTTTGAAAAT+GGG - tig0010241:5143-5162 None:intergenic 40.0%
! TAGGTCCAGCACTTTGAAAA+TGG - tig0010241:5144-5163 None:intergenic 40.0%
CAGCTCGACCTATGAAAATT+TGG - tig0010241:5310-5329 None:intergenic 40.0%
! CAAATTTTCATAGGTCGAGC+TGG + tig0010241:5308-5327 Msa1348170:intron 40.0%
TGGGTACATACCTGTATGAA+AGG + tig0010241:5328-5347 Msa1348170:CDS 40.0%
GTCCCAAATATTCGCATCTA+TGG + tig0010241:5360-5379 Msa1348170:CDS 40.0%
GCCCATAGATGCGAATATTT+GGG - tig0010241:5365-5384 None:intergenic 40.0%
! TCGTTTGACTTCTTTCGAAG+GGG - tig0010241:5391-5410 None:intergenic 40.0%
! CTCGTTTGACTTCTTTCGAA+GGG - tig0010241:5392-5411 None:intergenic 40.0%
GAATAGCTGTTGAACTTGGT+TGG + tig0010241:5826-5845 Msa1348170:intron 40.0%
! GTATCATTTTCAGCATGGAG+TGG + tig0010241:5877-5896 Msa1348170:intron 40.0%
GACTGTACATCAGTTAGGAT+TGG + tig0010241:6092-6111 Msa1348170:three_prime_UTR 40.0%
ATGAGATCAGCAAGAGGAAT+TGG - tig0010241:6145-6164 None:intergenic 40.0%
CTATCTATGAGATCAGCAAG+AGG - tig0010241:6151-6170 None:intergenic 40.0%
CTCTTGCTGATCTCATAGAT+AGG + tig0010241:6149-6168 Msa1348170:three_prime_UTR 40.0%
AGGCATCCACTAATTACAGT+AGG + tig0010241:6169-6188 Msa1348170:three_prime_UTR 40.0%
GTGTTGCAGCAAATGTATAC+CGG - tig0010241:6249-6268 None:intergenic 40.0%
TATGGTGTACTCTTTCACAC+TGG + tig0010241:6319-6338 Msa1348170:three_prime_UTR 40.0%
! TCGACTTTTAAGCCACGTGT+CGG + tig0010241:725-744 Msa1348170:five_prime_UTR 45.0%
CAAATGGTTTCCATCGCCAT+TGG + tig0010241:754-773 Msa1348170:five_prime_UTR 45.0%
AGAAAGGAGAGGGACCAAAA+TGG - tig0010241:978-997 None:intergenic 45.0%
! CAGGGTGGGTTTGTTTAGTT+TGG - tig0010241:1024-1043 None:intergenic 45.0%
CAAACTAAACAAACCCACCC+TGG + tig0010241:1022-1041 Msa1348170:intron 45.0%
TCCTATTGGGTGGTTAGCAA+TGG + tig0010241:1217-1236 Msa1348170:exon 45.0%
TCCATTGCTAACCACCCAAT+AGG - tig0010241:1221-1240 None:intergenic 45.0%
TAACTGGGGCTTGGAAGTTT+CGG - tig0010241:1254-1273 None:intergenic 45.0%
TCTGACAAGTGATGTGGTTC+TGG - tig0010241:1294-1313 None:intergenic 45.0%
ACCACATCACTTGTCAGACT+TGG + tig0010241:1296-1315 Msa1348170:CDS 45.0%
CAGGGAGATAAGTTAAACGG+CGG - tig0010241:1325-1344 None:intergenic 45.0%
AAGTATAGGGAAATGGGGTC+TGG - tig0010241:1417-1436 None:intergenic 45.0%
CCTGGTGAAGTATAGGGAAA+TGG - tig0010241:1424-1443 None:intergenic 45.0%
CCATTTCCCTATACTTCACC+AGG + tig0010241:1421-1440 Msa1348170:CDS 45.0%
ATCGGGGCATACATTACTTG+AGG + tig0010241:1555-1574 Msa1348170:CDS 45.0%
! AGCTGATTCATACTCGTCTG+TGG - tig0010241:1675-1694 None:intergenic 45.0%
GTATGAATCAGCTAGACGGA+AGG + tig0010241:1682-1701 Msa1348170:CDS 45.0%
AATACCAGGAGGAGACATTG+GGG + tig0010241:2030-2049 Msa1348170:intron 45.0%
ATCACAGCGCAATTGTTCCA+TGG + tig0010241:2181-2200 Msa1348170:CDS 45.0%
TGCTTGGTATGTTTCTCGTC+AGG + tig0010241:2340-2359 Msa1348170:intron 45.0%
TGTCAAAGATATCTGCCTGC+TGG + tig0010241:2399-2418 Msa1348170:intron 45.0%
GTCAAAGATATCTGCCTGCT+GGG + tig0010241:2400-2419 Msa1348170:intron 45.0%
GCCTGCTGGGTTAACTTTAT+AGG + tig0010241:2413-2432 Msa1348170:intron 45.0%
CTTGAATCAACGTTGCATCG+AGG + tig0010241:2476-2495 Msa1348170:intron 45.0%
TTAGGGTCACGTTGGGTATT+GGG - tig0010241:2684-2703 None:intergenic 45.0%
! TTTAGGGTCACGTTGGGTAT+TGG - tig0010241:2685-2704 None:intergenic 45.0%
AACAATTGGGGGCTGAAATG+AGG - tig0010241:2745-2764 None:intergenic 45.0%
TCAGCCCCCAATTGTTTCAA+TGG + tig0010241:2749-2768 Msa1348170:intron 45.0%
ATATTGCACACTGGGCACAT+GGG + tig0010241:2904-2923 Msa1348170:CDS 45.0%
TGAACATCAACCACCATGTG+TGG - tig0010241:2969-2988 None:intergenic 45.0%
! TGTTACACTGGTCTGGAATC+TGG - tig0010241:3068-3087 None:intergenic 45.0%
GAACCTGTCTTACAGATGTG+TGG + tig0010241:3095-3114 Msa1348170:intron 45.0%
! AAAATGGAGGCATGGAAGAC+AGG - tig0010241:3160-3179 None:intergenic 45.0%
CAAGCAAAAGATGAGGTTGC+CGG - tig0010241:3327-3346 None:intergenic 45.0%
!! ATATACATTGGCTTGGGTGG+AGG + tig0010241:3467-3486 Msa1348170:intron 45.0%
ACAGGTTTGATTCCCTGTGT+AGG + tig0010241:3492-3511 Msa1348170:intron 45.0%
TGACTAACATCAAGAGCCAG+AGG - tig0010241:3596-3615 None:intergenic 45.0%
GATCGTTGTCAATATCAGCC+GGG + tig0010241:3677-3696 Msa1348170:intron 45.0%
ATCGTTGTCAATATCAGCCG+GGG + tig0010241:3678-3697 Msa1348170:intron 45.0%
TCAATATCAGCCGGGGAAAA+AGG + tig0010241:3685-3704 Msa1348170:intron 45.0%
! GGAAACTCTTCCTTTTTCCC+CGG - tig0010241:3698-3717 None:intergenic 45.0%
AGGCGGAGAAAAATGACTGT+AGG - tig0010241:3789-3808 None:intergenic 45.0%
CCAATTGCTTCACCAATAGC+TGG - tig0010241:3922-3941 None:intergenic 45.0%
CCAGCTATTGGTGAAGCAAT+TGG + tig0010241:3919-3938 Msa1348170:CDS 45.0%
GCAAGCCATACATGAGTATG+AGG + tig0010241:3981-4000 Msa1348170:CDS 45.0%
ATGAGATGTCACCACAGAAG+AGG - tig0010241:4121-4140 None:intergenic 45.0%
TGGGTCCCACATAAAGTAGT+AGG - tig0010241:5124-5143 None:intergenic 45.0%
CTGACAGAAGCCTTTCATAC+AGG - tig0010241:5341-5360 None:intergenic 45.0%
GGCCCATAGATGCGAATATT+TGG - tig0010241:5366-5385 None:intergenic 45.0%
! GCTCGTTTGACTTCTTTCGA+AGG - tig0010241:5393-5412 None:intergenic 45.0%
! TGCAACATTTCTGGACCAAC+AGG + tig0010241:5458-5477 Msa1348170:CDS 45.0%
TAAATACCGATGGAGGGGTT+GGG - tig0010241:5927-5946 None:intergenic 45.0%
AACCCCTCCATCGGTATTTA+GGG + tig0010241:5927-5946 Msa1348170:CDS 45.0%
CATTGACCCCTAAATACCGA+TGG - tig0010241:5937-5956 None:intergenic 45.0%
TATCCATGCCCTTCATGACA+CGG + tig0010241:6012-6031 Msa1348170:CDS 45.0%
GAAGTTGACCGTGTCATGAA+GGG - tig0010241:6023-6042 None:intergenic 45.0%
AGAAGTTGACCGTGTCATGA+AGG - tig0010241:6024-6043 None:intergenic 45.0%
CATTTGCTTGATCCGACACG+TGG - tig0010241:740-759 None:intergenic 50.0%
CACGTGTCGGATCAAGCAAA+TGG + tig0010241:738-757 Msa1348170:five_prime_UTR 50.0%
TGGTTTCCATCGCCATTGGT+TGG + tig0010241:758-777 Msa1348170:five_prime_UTR 50.0%
! GGTTTCCATCGCCATTGGTT+GGG + tig0010241:759-778 Msa1348170:five_prime_UTR 50.0%
CAGAGCTTAGTGGAGAACAG+CGG - tig0010241:898-917 None:intergenic 50.0%
GAACAGCAATAACTGGGGCT+TGG - tig0010241:1263-1282 None:intergenic 50.0%
GCCAAGTCTGACAAGTGATG+TGG - tig0010241:1300-1319 None:intergenic 50.0%
! TGACGGTTGATGCACGAACA+GGG - tig0010241:1343-1362 None:intergenic 50.0%
! TTGACGGTTGATGCACGAAC+AGG - tig0010241:1344-1363 None:intergenic 50.0%
AATGCCTTCACAACAGCTGC+AGG - tig0010241:1500-1519 None:intergenic 50.0%
ATACCAGGAGGAGACATTGG+GGG + tig0010241:2031-2050 Msa1348170:intron 50.0%
GGGGGTTCTCTTTAATCACC+CGG + tig0010241:2049-2068 Msa1348170:intron 50.0%
GATATTGCACACTGGGCACA+TGG + tig0010241:2903-2922 Msa1348170:CDS 50.0%
TATTGCACACTGGGCACATG+GGG + tig0010241:2905-2924 Msa1348170:CDS 50.0%
TTACAGATGTGTGGGCCTAC+AGG + tig0010241:3104-3123 Msa1348170:intron 50.0%
! CTTTTGCTTGTTTCAGGCGG+TGG + tig0010241:3337-3356 Msa1348170:intron 50.0%
AAGTTCACAAACCTGGACGG+AGG - tig0010241:3409-3428 None:intergenic 50.0%
CGTTTCTCCTTCACTTCCTC+TGG + tig0010241:3577-3596 Msa1348170:intron 50.0%
TCAAGAGCCAGAGGAAGTGA+AGG - tig0010241:3587-3606 None:intergenic 50.0%
TCTTGGGACTGATACTCTGG+TGG + tig0010241:3726-3745 Msa1348170:intron 50.0%
CATGCAGTTGAGTCACTTCC+AGG + tig0010241:4382-4401 Msa1348170:intron 50.0%
!! TTTGGCTCTCGGATATGTCC+TGG - tig0010241:4403-4422 None:intergenic 50.0%
! CATTGAAGGGCACAGAGACT+AGG - tig0010241:4908-4927 None:intergenic 50.0%
! GGGACCCATTTTCAAAGTGC+TGG + tig0010241:5136-5155 Msa1348170:intron 50.0%
TTGACTTCTTTCGAAGGGGC+TGG - tig0010241:5387-5406 None:intergenic 50.0%
CATGGAGTGGCAATCAGATC+AGG + tig0010241:5890-5909 Msa1348170:CDS 50.0%
CTAAATACCGATGGAGGGGT+TGG - tig0010241:5928-5947 None:intergenic 50.0%
CAACCCCTCCATCGGTATTT+AGG + tig0010241:5926-5945 Msa1348170:CDS 50.0%
ACCCCTCCATCGGTATTTAG+GGG + tig0010241:5928-5947 Msa1348170:CDS 50.0%
ACCCCTAAATACCGATGGAG+GGG - tig0010241:5932-5951 None:intergenic 50.0%
GACCCCTAAATACCGATGGA+GGG - tig0010241:5933-5952 None:intergenic 50.0%
TGACCCCTAAATACCGATGG+AGG - tig0010241:5934-5953 None:intergenic 50.0%
! TCCATCGCCATTGGTTGGGT+TGG + tig0010241:763-782 Msa1348170:five_prime_UTR 55.0%
! CCATCGCCATTGGTTGGGTT+GGG + tig0010241:764-783 Msa1348170:five_prime_UTR 55.0%
AGCTTAGTGGAGAACAGCGG+CGG - tig0010241:895-914 None:intergenic 55.0%
! CTGGTAGTGTGGCCCAAAGA+GGG - tig0010241:1398-1417 None:intergenic 55.0%
! TCTGGTAGTGTGGCCCAAAG+AGG - tig0010241:1399-1418 None:intergenic 55.0%
! GGAAATGGGGTCTGGTAGTG+TGG - tig0010241:1409-1428 None:intergenic 55.0%
GAAGCCTGCAGCTGTTGTGA+AGG + tig0010241:1493-1512 Msa1348170:CDS 55.0%
CATGTGTGGAACACTCTGGC+AGG - tig0010241:2955-2974 None:intergenic 55.0%
! CTGCCAGAGTGTTCCACACA+TGG + tig0010241:2953-2972 Msa1348170:CDS 55.0%
CCACCATGTGTGGAACACTC+TGG - tig0010241:2959-2978 None:intergenic 55.0%
! CCAGAGTGTTCCACACATGG+TGG + tig0010241:2956-2975 Msa1348170:CDS 55.0%
GGCCCACACATCTGTAAGAC+AGG - tig0010241:3101-3120 None:intergenic 55.0%
ATGTGTGGGCCTACAGGCAT+TGG + tig0010241:3110-3129 Msa1348170:CDS 55.0%
! ATGGAGGCATGGAAGACAGG+AGG - tig0010241:3157-3176 None:intergenic 55.0%
CACAAACCTGGACGGAGGTT+CGG - tig0010241:3404-3423 None:intergenic 55.0%
GAGGCTGGAACACCAGCTAT+TGG + tig0010241:3907-3926 Msa1348170:CDS 55.0%
!! ACCACAGGGTGTTTGGCTCT+CGG - tig0010241:4414-4433 None:intergenic 55.0%
ATTGTGCCCAACCCCTCCAT+CGG + tig0010241:5918-5937 Msa1348170:CDS 55.0%
TGACCGTGTCATGAAGGGCA+TGG - tig0010241:6018-6037 None:intergenic 55.0%
CCCAACCCAACCAATGGCGA+TGG - tig0010241:767-786 None:intergenic 60.0%
GAACCCCCAATGTCTCCTCC+TGG - tig0010241:2037-2056 None:intergenic 60.0%
CTTATGCCGAACCTCCGTCC+AGG + tig0010241:3395-3414 Msa1348170:CDS 60.0%
!! TTGGCTTGGGTGGAGGTCAC+AGG + tig0010241:3474-3493 Msa1348170:intron 60.0%
TCCGAGAGCCAAACACCCTG+TGG + tig0010241:4410-4429 Msa1348170:intron 60.0%
GATGGAGGGGTTGGGCACAA+TGG - tig0010241:5919-5938 None:intergenic 60.0%
GCACACTGGGCACATGGGGT+TGG + tig0010241:2909-2928 Msa1348170:CDS 65.0%
GTGGAGAACAGCGGCGGCGA+GGG - tig0010241:889-908 None:intergenic 70.0%
AGTGGAGAACAGCGGCGGCG+AGG - tig0010241:890-909 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
tig0010241 gene 625 6380 625 ID=Msa1348170;Name=Msa1348170
tig0010241 mRNA 625 6380 625 ID=Msa1348170-mRNA-1;Parent=Msa1348170;Name=Msa1348170-mRNA-1;_AED=0.22;_eAED=0.22;_QI=383|1|1|1|0.88|0.8|10|320|466
tig0010241 exon 625 942 625 ID=Msa1348170-mRNA-1:exon:6263;Parent=Msa1348170-mRNA-1
tig0010241 exon 1171 1576 1171 ID=Msa1348170-mRNA-1:exon:6264;Parent=Msa1348170-mRNA-1
tig0010241 exon 1664 1823 1664 ID=Msa1348170-mRNA-1:exon:6265;Parent=Msa1348170-mRNA-1
tig0010241 exon 2159 2345 2159 ID=Msa1348170-mRNA-1:exon:6266;Parent=Msa1348170-mRNA-1
tig0010241 exon 2883 3028 2883 ID=Msa1348170-mRNA-1:exon:6267;Parent=Msa1348170-mRNA-1
tig0010241 exon 3110 3182 3110 ID=Msa1348170-mRNA-1:exon:6268;Parent=Msa1348170-mRNA-1
tig0010241 exon 3353 3416 3353 ID=Msa1348170-mRNA-1:exon:6269;Parent=Msa1348170-mRNA-1
tig0010241 exon 3903 4002 3903 ID=Msa1348170-mRNA-1:exon:6270;Parent=Msa1348170-mRNA-1
tig0010241 exon 5321 5479 5321 ID=Msa1348170-mRNA-1:exon:6271;Parent=Msa1348170-mRNA-1
tig0010241 exon 5890 6380 5890 ID=Msa1348170-mRNA-1:exon:6272;Parent=Msa1348170-mRNA-1
tig0010241 five_prime_UTR 625 942 625 ID=Msa1348170-mRNA-1:five_prime_utr;Parent=Msa1348170-mRNA-1
tig0010241 five_prime_UTR 1171 1235 1171 ID=Msa1348170-mRNA-1:five_prime_utr;Parent=Msa1348170-mRNA-1
tig0010241 CDS 1236 1576 1236 ID=Msa1348170-mRNA-1:cds;Parent=Msa1348170-mRNA-1
tig0010241 CDS 1664 1823 1664 ID=Msa1348170-mRNA-1:cds;Parent=Msa1348170-mRNA-1
tig0010241 CDS 2159 2345 2159 ID=Msa1348170-mRNA-1:cds;Parent=Msa1348170-mRNA-1
tig0010241 CDS 2883 3028 2883 ID=Msa1348170-mRNA-1:cds;Parent=Msa1348170-mRNA-1
tig0010241 CDS 3110 3182 3110 ID=Msa1348170-mRNA-1:cds;Parent=Msa1348170-mRNA-1
tig0010241 CDS 3353 3416 3353 ID=Msa1348170-mRNA-1:cds;Parent=Msa1348170-mRNA-1
tig0010241 CDS 3903 4002 3903 ID=Msa1348170-mRNA-1:cds;Parent=Msa1348170-mRNA-1
tig0010241 CDS 5321 5479 5321 ID=Msa1348170-mRNA-1:cds;Parent=Msa1348170-mRNA-1
tig0010241 CDS 5890 6060 5890 ID=Msa1348170-mRNA-1:cds;Parent=Msa1348170-mRNA-1
tig0010241 three_prime_UTR 6061 6380 6061 ID=Msa1348170-mRNA-1:three_prime_utr;Parent=Msa1348170-mRNA-1
Gene Sequence

>Msa1348170

ATGGAAGTTTTGCTGCCGAAACTTCCAAGCCCCAGTTATTGCTGTTCAATCACTACCAGAACCACATCACTTGTCAGACTTGGCTTCCGCCGTTTAACTTATCTCCCTGTTCGTGCATCAACCGTCAATCAAGCAGTAGCTGAACCAACTCTTAGTTCTCCCTCTTTGGGCCACACTACCAGACCCCATTTCCCTATACTTCACCAGGAAGTAAATGGCTCAAAACTTGTTTACATAGACAATGCAGCAACGTCTCAGAAGCCTGCAGCTGTTGTGAAGGCATTGCAAGACTATTATGAAGGTTACAATTCAAACGTGCATCGGGGCATACATTACTTGAGTGCAAAGGCCACAGACGAGTATGAATCAGCTAGACGGAAGGTTGCAGCTTTTATAAATGCTTCTGATTCACGAGAAATTGTATTCACAAGAAATGCTACTGAAGCTATCAATCTAGTAGCTTATTCTTGGGGCTTGTCAAATTTAAAACAAGGAGATGAGATCGTACTTACAGTTGCTGAACATCACAGCGCAATTGTTCCATGGCAATTAGTAGCTCAAAAAGTTGGAGCTGTTTTGAAATTTGTGAATTTAAACCAAGATGAAATTCCAGATATAGACAAATTGAAGGAAATGCTTTCAAAGAAGACAAAAATAGTTGTTGTTCATCATGTTTCAAATGTGCTTGCTTCTGTTCTTCCTATTAGAGATATTGCACACTGGGCACATGGGGTTGGAGCAAAAGTTCTTGTAGATGCCTGCCAGAGTGTTCCACACATGGTGGTTGATGTTCAAAACCTTGATGCTGATTTTCTTGTTGCTTCTTCTCACAAGATGTGTGGGCCTACAGGCATTGGATTCTTATATGGTAAAATGGACCTCCTGTCTTCCATGCCTCCATTTTTAGGCGGTGGTGAAATGATTTCAGATGTATATTTGGATCATTCAACTTATGCCGAACCTCCGTCCAGATTTGAGGCTGGAACACCAGCTATTGGTGAAGCAATTGGATTAGGAGCAGCAATTGATTACTTGTCTGGGATTGGGATGCAAGCCATACATGAGTATGAGGTCGAGCTGGGTACATACCTGTATGAAAGGCTTCTGTCAGTCCCAAATATTCGCATCTATGGGCCAGCCCCTTCGAAAGAAGTCAAACGAGCTTCTCTTTGTTCTTTCAATGTTGAGAATTTGCACCCTACTGATCTTGCAACATTTCTGGACCAACAGCATGGAGTGGCAATCAGATCAGGTCACCATTGTGCCCAACCCCTCCATCGGTATTTAGGGGTCAATGCAAGCGCACGTGCTAGCCTCTATTTCTACAACACTAAGGAGGATGTCGACAACTTTATCCATGCCCTTCATGACACGGTCAACTTCTTCAATTCATTCAAGTAG
Protein sequence

>Msa1348170

MEVLLPKLPSPSYCCSITTRTTSLVRLGFRRLTYLPVRASTVNQAVAEPTLSSPSLGHTTRPHFPILHQEVNGSKLVYIDNAATSQKPAAVVKALQDYYEGYNSNVHRGIHYLSAKATDEYESARRKVAAFINASDSREIVFTRNATEAINLVAYSWGLSNLKQGDEIVLTVAEHHSAIVPWQLVAQKVGAVLKFVNLNQDEIPDIDKLKEMLSKKTKIVVVHHVSNVLASVLPIRDIAHWAHGVGAKVLVDACQSVPHMVVDVQNLDADFLVASSHKMCGPTGIGFLYGKMDLLSSMPPFLGGGEMISDVYLDHSTYAEPPSRFEAGTPAIGEAIGLGAAIDYLSGIGMQAIHEYEVELGTYLYERLLSVPNIRIYGPAPSKEVKRASLCSFNVENLHPTDLATFLDQQHGVAIRSGHHCAQPLHRYLGVNASARASLYFYNTKEDVDNFIHALHDTVNFFNSFK*