AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1391140

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1391140 MtrunA17_Chr4g0016151 100.000 82 0 0 199 280 1 82 7.40e-55 172
Msa1391140 MtrunA17_CPg0492351 100.000 82 0 0 199 280 1 82 7.40e-55 172
Msa1391140 MtrunA17_Chr7g0229411 98.780 82 1 0 199 280 1 82 3.39e-54 170
Msa1391140 MtrunA17_Chr4g0000631 98.780 82 1 0 199 280 1 82 3.50e-54 170
Msa1391140 MtrunA17_Chr5g0435911 97.561 82 2 0 199 280 1 82 1.38e-52 166
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score

Find 122 sgRNAs with CRISPR-Local

Find 458 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCGTTCATGGTTCGATATTC+TGG 0.185586 tig0021410:-42058 None:intergenic
TGCACGCCTCCGTTACCTTT+TGG 0.196515 tig0021410:+42999 Msa1391140:CDS
CAGCTCACGTACCGCTTTAA+TGG 0.245260 tig0021410:+42704 Msa1391140:CDS
TCATGCCTTTACTTCGTTCA+TGG 0.272664 tig0021410:-42071 None:intergenic
GGCTGTGATACCGGAGGCTC+TGG 0.279951 tig0021410:+42458 Msa1391140:CDS
TCTCAGGTAGACAGTTTCTA+TGG 0.287253 tig0021410:-43034 None:intergenic
GCACGAAAGGCGTAACGATC+TGG 0.311741 tig0021410:-43298 None:intergenic
TCTAACGCCCACACCGGATA+TGG 0.325084 tig0021410:+42653 Msa1391140:CDS
CAGAGAACCCATCGCTGTTT+CGG 0.333458 tig0021410:+42437 Msa1391140:CDS
TCCTCGGGCCAGACGGAGAT+TGG 0.349112 tig0021410:-42970 None:intergenic
TCCCGTCGATGTGAGCTCTT+GGG 0.355274 tig0021410:+42798 Msa1391140:CDS
CACCAACTTCCTTAACCTTC+CGG 0.362818 tig0021410:+43423 Msa1391140:CDS
TTCACCGGGGCTTCGGTCGC+CGG 0.371598 tig0021410:+43383 Msa1391140:CDS
CAAAGTCGTAAGACCATGTA+TGG 0.380055 tig0021410:-43466 None:intergenic
AAAGTTACTCTAGGGATAAC+AGG 0.383241 tig0021410:-42830 None:intergenic
CATTAAAGCGGTACGTGAGC+TGG 0.384796 tig0021410:-42703 None:intergenic
TTCCCGTCGATGTGAGCTCT+TGG 0.386490 tig0021410:+42797 Msa1391140:CDS
AGCTCACGTACCGCTTTAAT+GGG 0.395506 tig0021410:+42705 Msa1391140:CDS
GCCGCCGTTCACCGGGGCTT+CGG 0.397671 tig0021410:+43376 Msa1391140:CDS
CGCTGTTTCGGCTGTGATAC+CGG 0.403155 tig0021410:+42449 Msa1391140:CDS
AATAGGAGAGCACTCATCTT+GGG 0.408942 tig0021410:+42490 Msa1391140:CDS
TGCCCAGTGCCGGAAGGTTA+AGG 0.409134 tig0021410:-43432 None:intergenic
CCCTTCTGCCTTTGCACTCG+AGG 0.411231 tig0021410:+42946 Msa1391140:CDS
CTCACATCGACGGGAAGGTT+TGG 0.420533 tig0021410:-42790 None:intergenic
CTTCCTTAACCTTCCGGCAC+TGG 0.422146 tig0021410:+43429 Msa1391140:CDS
TGTAGTATGTTCCAAGGGTT+GGG 0.424624 tig0021410:-42735 None:intergenic
TAGTTACGGCCGCCGTTCAC+CGG 0.432611 tig0021410:+43368 Msa1391140:CDS
GGCTGACGCCTGCCCAGTGC+CGG 0.435469 tig0021410:-43442 None:intergenic
TTAACCTTCCGGCACTGGGC+AGG 0.436659 tig0021410:+43434 Msa1391140:CDS
AGTTACGGCCGCCGTTCACC+GGG 0.437053 tig0021410:+43369 Msa1391140:CDS
AGTTGAACAATCAAAATAGA+TGG 0.442588 tig0021410:+42228 Msa1391140:CDS
CCACCAAGTTCGGGATGGAT+TGG 0.447763 tig0021410:+42011 None:intergenic
CTGTAGTATGTTCCAAGGGT+TGG 0.452990 tig0021410:-42736 None:intergenic
TCGCCGGCTTCCCTGTCATC+AGG 0.453580 tig0021410:+43399 Msa1391140:CDS
GAGACAGTTCGGTCCATATC+CGG 0.455659 tig0021410:-42666 None:intergenic
ACAGACCAAGGGACAGTCTC+AGG 0.456050 tig0021410:-43050 None:intergenic
CAGAACGTCGTGAGACAGTT+CGG 0.457061 tig0021410:-42677 None:intergenic
GAAGCCGGCGACCGAAGCCC+CGG 0.461073 tig0021410:-43387 None:intergenic
CCTTCTGCCTTTGCACTCGA+GGG 0.461384 tig0021410:+42947 Msa1391140:CDS
GACTGTCCCTTGGTCTGTAC+TGG 0.464231 tig0021410:+43055 Msa1391140:CDS
CCCCAAGAGCTCACATCGAC+GGG 0.472021 tig0021410:-42799 None:intergenic
TACATGGTCTTACGACTTTG+CGG 0.476001 tig0021410:+43469 Msa1391140:CDS
GTTCGATATTCTGGTGTCCT+AGG 0.478291 tig0021410:-42049 None:intergenic
TCCGACTTCCCCAGAGCCTC+CGG 0.480691 tig0021410:-42468 None:intergenic
CTCGAGGGCCAATCTCCGTC+TGG 0.480699 tig0021410:+42962 Msa1391140:CDS
TGCCGGAAGGTTAAGGAAGT+TGG 0.485164 tig0021410:-43425 None:intergenic
GAATAGGAGAGCACTCATCT+TGG 0.487596 tig0021410:+42489 Msa1391140:CDS
ACAAGGAATTTCGCTACCTT+AGG 0.488888 tig0021410:+43338 Msa1391140:CDS
GGCTCTGGGGAAGTCGGAAT+AGG 0.491163 tig0021410:+42473 Msa1391140:CDS
CACGAAAGGCGTAACGATCT+GGG 0.491297 tig0021410:-43297 None:intergenic
GAAGTTGGTGACCTGATGAC+AGG 0.495416 tig0021410:-43410 None:intergenic
AGGTAGCGAAATTCCTTGTC+GGG 0.495901 tig0021410:-43334 None:intergenic
ATTGCCTGATCGAATTGATC+AGG 0.499380 tig0021410:+42253 Msa1391140:CDS
TTCCTTAACCTTCCGGCACT+GGG 0.504342 tig0021410:+43430 Msa1391140:CDS
GCGACCGAAGCCCCGGTGAA+CGG 0.505900 tig0021410:-43380 None:intergenic
CACTGTCTCGGAGAGAGGCT+CGG 0.506062 tig0021410:-43274 None:intergenic
GATGTCGGCTCTTCGCCACC+TGG 0.508239 tig0021410:-42761 None:intergenic
GCTGTGATACCGGAGGCTCT+GGG 0.508804 tig0021410:+42459 Msa1391140:CDS
CTCAGGTAGACAGTTTCTAT+GGG 0.510655 tig0021410:-43033 None:intergenic
CCCTCGAGTGCAAAGGCAGA+AGG 0.511073 tig0021410:-42947 None:intergenic
AAGGTAGCGAAATTCCTTGT+CGG 0.511527 tig0021410:-43335 None:intergenic
TAACGATCTGGGCACTGTCT+CGG 0.513539 tig0021410:-43286 None:intergenic
ATGACCTGATCAATTCGATC+AGG 0.514268 tig0021410:-42257 None:intergenic
GATCGTTACGCCTTTCGTGC+GGG 0.516913 tig0021410:+43301 Msa1391140:CDS
TGACCTGATGACAGGGAAGC+CGG 0.518242 tig0021410:-43402 None:intergenic
CCTTAGGACCGTTATAGTTA+CGG 0.519214 tig0021410:+43354 Msa1391140:CDS
GAGGCGTGCAAAGGTTTCCT+CGG 0.526013 tig0021410:-42986 None:intergenic
AGGCGTGCAAAGGTTTCCTC+GGG 0.527025 tig0021410:-42985 None:intergenic
CCCGTCGATGTGAGCTCTTG+GGG 0.534121 tig0021410:+42799 Msa1391140:CDS
CCTTGGTCTGTACTGGCACA+AGG 0.538614 tig0021410:+43062 Msa1391140:CDS
ATTAAAGCGGTACGTGAGCT+GGG 0.539036 tig0021410:-42702 None:intergenic
CTGGGCACTGTCTCGGAGAG+AGG 0.542198 tig0021410:-43279 None:intergenic
AAGGTTTGGCACCTCGATGT+CGG 0.545826 tig0021410:-42776 None:intergenic
TGGGCGAACAGCCCAACCCT+TGG 0.548090 tig0021410:+42724 Msa1391140:CDS
TCCCCAAGAGCTCACATCGA+CGG 0.555494 tig0021410:-42800 None:intergenic
AAAGTCGTAAGACCATGTAT+GGG 0.556989 tig0021410:-43465 None:intergenic
GCCAATCTCCGTCTGGCCCG+AGG 0.562208 tig0021410:+42969 Msa1391140:CDS
TGGAGCTGTAGTATGTTCCA+AGG 0.564153 tig0021410:-42741 None:intergenic
ACCGAAGCCCCGGTGAACGG+CGG 0.564471 tig0021410:-43377 None:intergenic
AGATCGTTACGCCTTTCGTG+CGG 0.565799 tig0021410:+43300 Msa1391140:CDS
ACCGGAGGCTCTGGGGAAGT+CGG 0.567230 tig0021410:+42467 Msa1391140:CDS
GACGCCTGCCCAGTGCCGGA+AGG 0.568365 tig0021410:-43438 None:intergenic
TATCACAGCCGAAACAGCGA+TGG 0.574058 tig0021410:-42445 None:intergenic
CCGTAACTATAACGGTCCTA+AGG 0.574485 tig0021410:-43354 None:intergenic
TTGGAACATACTACAGCTCC+AGG 0.579135 tig0021410:+42743 Msa1391140:CDS
TAAGTTCCGACCCGCACGAA+AGG 0.581321 tig0021410:-43311 None:intergenic
GTCTACCTGAGACTGTCCCT+TGG 0.586612 tig0021410:+43045 Msa1391140:CDS
AAGGTAACGGAGGCGTGCAA+AGG 0.595805 tig0021410:-42995 None:intergenic
CCTCGAGTGCAAAGGCAGAA+GGG 0.595841 tig0021410:-42946 None:intergenic
AAAGGTTTCCTCGGGCCAGA+CGG 0.597813 tig0021410:-42977 None:intergenic
CTGTGATACCGGAGGCTCTG+GGG 0.598997 tig0021410:+42460 Msa1391140:CDS
AACGGCGGCCGTAACTATAA+CGG 0.599287 tig0021410:-43362 None:intergenic
GTTACGCCTTTCGTGCGGGT+CGG 0.605304 tig0021410:+43305 Msa1391140:CDS
GGTGTGGTTCCTCTACGCCT+AGG 0.606362 tig0021410:+42032 Msa1391140:CDS
TGGGGCGTAGGCCTCCCAAA+AGG 0.606913 tig0021410:-43014 None:intergenic
GTTCGGTCCATATCCGGTGT+GGG 0.608178 tig0021410:-42660 None:intergenic
AAGAGCTCACATCGACGGGA+AGG 0.613365 tig0021410:-42795 None:intergenic
AGTTCGGTCCATATCCGGTG+TGG 0.618273 tig0021410:-42661 None:intergenic
GGGCTGTTCGCCCATTAAAG+CGG 0.619701 tig0021410:-42715 None:intergenic
ATCACAGCCGAAACAGCGAT+GGG 0.621115 tig0021410:-42444 None:intergenic
AAGTCGTAAGACCATGTATG+GGG 0.621859 tig0021410:-43464 None:intergenic
TTCTGGTGTCCTAGGCGTAG+AGG 0.622900 tig0021410:-42041 None:intergenic
AGACAGTTTCTATGGGGCGT+AGG 0.622986 tig0021410:-43026 None:intergenic
ATAGGAGAGCACTCATCTTG+GGG 0.623240 tig0021410:+42491 Msa1391140:CDS
AAGTTGGTGACCTGATGACA+GGG 0.627282 tig0021410:-43409 None:intergenic
GTAGGCCTCCCAAAAGGTAA+CGG 0.632223 tig0021410:-43008 None:intergenic
AAGTTCGGGATGGATTGGTG+TGG 0.636372 tig0021410:+42016 None:intergenic
GGAGCTGTAGTATGTTCCAA+GGG 0.640199 tig0021410:-42740 None:intergenic
TAGACATGTCTGTGAAGATG+CGG 0.645281 tig0021410:-43246 None:intergenic
CCTTGTGCCAGTACAGACCA+AGG 0.645647 tig0021410:-43062 None:intergenic
GGGTCGGAACTTACCCGACA+AGG 0.655880 tig0021410:+43321 Msa1391140:CDS
CAATGCTCTAACGCCCACAC+CGG 0.666176 tig0021410:+42647 Msa1391140:CDS
AGATTGGCCCTCGAGTGCAA+AGG 0.670375 tig0021410:-42954 None:intergenic
GGCCTCCCAAAAGGTAACGG+AGG 0.683463 tig0021410:-43005 None:intergenic
AGTCGTAAGACCATGTATGG+GGG 0.686647 tig0021410:-43463 None:intergenic
CTTGTGCCAGTACAGACCAA+GGG 0.693537 tig0021410:-43061 None:intergenic
GTGGGCGTTAGAGCATTGAG+AGG 0.697492 tig0021410:-42642 None:intergenic
GTGGCGAAGAGCCGACATCG+AGG 0.704477 tig0021410:+42765 Msa1391140:CDS
TGTTTCGGCTGTGATACCGG+AGG 0.717886 tig0021410:+42452 Msa1391140:CDS
TCAGGTAGACAGTTTCTATG+GGG 0.720720 tig0021410:-43032 None:intergenic
GTTACGGCCGCCGTTCACCG+GGG 0.732311 tig0021410:+43370 Msa1391140:CDS
GAACATACTACAGCTCCAGG+TGG 0.771466 tig0021410:+42746 Msa1391140:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
! AGTTGAACAATCAAAATAGA+TGG + tig0021410:42228-42247 Msa1391140:CDS 25.0%
! AGTTGAACAATCAAAATAGA+TGG + tig0021410:42228-42247 Msa1391140:CDS 25.0%
CACCTATCGTTAATGAAAAA+CGG + tig0021410:42352-42371 Msa1391140:intron 30.0%
!!! AGTTTTGAGAATTCAAGAGA+AGG - tig0021410:42393-42412 None:intergenic 30.0%
AACGGATAAAAGTTACTCTA+GGG - tig0021410:42841-42860 None:intergenic 30.0%
CACCTATCGTTAATGAAAAA+CGG + tig0021410:42352-42371 Msa1391140:intron 30.0%
!!! AGTTTTGAGAATTCAAGAGA+AGG - tig0021410:42393-42412 None:intergenic 30.0%
AACGGATAAAAGTTACTCTA+GGG - tig0021410:42841-42860 None:intergenic 30.0%
! CATATTGACTAGTCAATGTC+AGG + tig0021410:42102-42121 Msa1391140:intron 35.0%
!!! AGCCGTTTTTCATTAACGAT+AGG - tig0021410:42357-42376 None:intergenic 35.0%
! AAAGTTACTCTAGGGATAAC+AGG - tig0021410:42833-42852 None:intergenic 35.0%
CAACGGATAAAAGTTACTCT+AGG - tig0021410:42842-42861 None:intergenic 35.0%
AAAGTCGTAAGACCATGTAT+GGG - tig0021410:43468-43487 None:intergenic 35.0%
! CATATTGACTAGTCAATGTC+AGG + tig0021410:42102-42121 Msa1391140:intron 35.0%
!!! AGCCGTTTTTCATTAACGAT+AGG - tig0021410:42357-42376 None:intergenic 35.0%
! AAAGTTACTCTAGGGATAAC+AGG - tig0021410:42833-42852 None:intergenic 35.0%
CAACGGATAAAAGTTACTCT+AGG - tig0021410:42842-42861 None:intergenic 35.0%
AAAGTCGTAAGACCATGTAT+GGG - tig0021410:43468-43487 None:intergenic 35.0%
TCGTTCATGGTTCGATATTC+TGG - tig0021410:42061-42080 None:intergenic 40.0%
TCGAACCATGAACGAAGTAA+AGG + tig0021410:42066-42085 Msa1391140:intron 40.0%
TCATGCCTTTACTTCGTTCA+TGG - tig0021410:42074-42093 None:intergenic 40.0%
TTGAATAGCTAGGGATGGAA+GGG - tig0021410:42166-42185 None:intergenic 40.0%
TTCCATCCCTAGCTATTCAA+GGG + tig0021410:42166-42185 Msa1391140:intron 40.0%
ATTGCCTGATCGAATTGATC+AGG + tig0021410:42253-42272 Msa1391140:CDS 40.0%
ATGACCTGATCAATTCGATC+AGG - tig0021410:42260-42279 None:intergenic 40.0%
GATCAGGTCATGTAAGAACA+AGG + tig0021410:42269-42288 Msa1391140:intron 40.0%
AGAACAAGGTTCAAGTCTAC+CGG + tig0021410:42283-42302 Msa1391140:intron 40.0%
CATTAACGATAGGTGTCAAG+TGG - tig0021410:42347-42366 None:intergenic 40.0%
GAGAATTCAAGAGAAGGTCA+CGG - tig0021410:42387-42406 None:intergenic 40.0%
!! AATAGGAGAGCACTCATCTT+GGG + tig0021410:42490-42509 Msa1391140:CDS 40.0%
TGTAGTATGTTCCAAGGGTT+GGG - tig0021410:42738-42757 None:intergenic 40.0%
! AACTTTTATCCGTTGAGCGA+CGG + tig0021410:42847-42866 Msa1391140:intron 40.0%
TCAGGTAGACAGTTTCTATG+GGG - tig0021410:43035-43054 None:intergenic 40.0%
CTCAGGTAGACAGTTTCTAT+GGG - tig0021410:43036-43055 None:intergenic 40.0%
TCTCAGGTAGACAGTTTCTA+TGG - tig0021410:43037-43056 None:intergenic 40.0%
TAGACATGTCTGTGAAGATG+CGG - tig0021410:43249-43268 None:intergenic 40.0%
AAGGTAGCGAAATTCCTTGT+CGG - tig0021410:43338-43357 None:intergenic 40.0%
ACAAGGAATTTCGCTACCTT+AGG + tig0021410:43338-43357 Msa1391140:CDS 40.0%
CCTTAGGACCGTTATAGTTA+CGG + tig0021410:43354-43373 Msa1391140:CDS 40.0%
AAGTCGTAAGACCATGTATG+GGG - tig0021410:43467-43486 None:intergenic 40.0%
CAAAGTCGTAAGACCATGTA+TGG - tig0021410:43469-43488 None:intergenic 40.0%
! TACATGGTCTTACGACTTTG+CGG + tig0021410:43469-43488 Msa1391140:CDS 40.0%
TCGTTCATGGTTCGATATTC+TGG - tig0021410:42061-42080 None:intergenic 40.0%
TCGAACCATGAACGAAGTAA+AGG + tig0021410:42066-42085 Msa1391140:intron 40.0%
TCATGCCTTTACTTCGTTCA+TGG - tig0021410:42074-42093 None:intergenic 40.0%
TTGAATAGCTAGGGATGGAA+GGG - tig0021410:42166-42185 None:intergenic 40.0%
TTCCATCCCTAGCTATTCAA+GGG + tig0021410:42166-42185 Msa1391140:intron 40.0%
ATTGCCTGATCGAATTGATC+AGG + tig0021410:42253-42272 Msa1391140:CDS 40.0%
ATGACCTGATCAATTCGATC+AGG - tig0021410:42260-42279 None:intergenic 40.0%
GATCAGGTCATGTAAGAACA+AGG + tig0021410:42269-42288 Msa1391140:intron 40.0%
AGAACAAGGTTCAAGTCTAC+CGG + tig0021410:42283-42302 Msa1391140:intron 40.0%
CATTAACGATAGGTGTCAAG+TGG - tig0021410:42347-42366 None:intergenic 40.0%
GAGAATTCAAGAGAAGGTCA+CGG - tig0021410:42387-42406 None:intergenic 40.0%
!! AATAGGAGAGCACTCATCTT+GGG + tig0021410:42490-42509 Msa1391140:CDS 40.0%
TGTAGTATGTTCCAAGGGTT+GGG - tig0021410:42738-42757 None:intergenic 40.0%
! AACTTTTATCCGTTGAGCGA+CGG + tig0021410:42847-42866 Msa1391140:intron 40.0%
TCAGGTAGACAGTTTCTATG+GGG - tig0021410:43035-43054 None:intergenic 40.0%
CTCAGGTAGACAGTTTCTAT+GGG - tig0021410:43036-43055 None:intergenic 40.0%
TCTCAGGTAGACAGTTTCTA+TGG - tig0021410:43037-43056 None:intergenic 40.0%
TAGACATGTCTGTGAAGATG+CGG - tig0021410:43249-43268 None:intergenic 40.0%
AAGGTAGCGAAATTCCTTGT+CGG - tig0021410:43338-43357 None:intergenic 40.0%
ACAAGGAATTTCGCTACCTT+AGG + tig0021410:43338-43357 Msa1391140:CDS 40.0%
CCTTAGGACCGTTATAGTTA+CGG + tig0021410:43354-43373 Msa1391140:CDS 40.0%
AAGTCGTAAGACCATGTATG+GGG - tig0021410:43467-43486 None:intergenic 40.0%
CAAAGTCGTAAGACCATGTA+TGG - tig0021410:43469-43488 None:intergenic 40.0%
! TACATGGTCTTACGACTTTG+CGG + tig0021410:43469-43488 Msa1391140:CDS 40.0%
GTTCGATATTCTGGTGTCCT+AGG - tig0021410:42052-42071 None:intergenic 45.0%
GTCAGGTCCTAATTCTTGAC+TGG + tig0021410:42119-42138 Msa1391140:intron 45.0%
GTCCTAATTCTTGACTGGAG+AGG + tig0021410:42124-42143 Msa1391140:intron 45.0%
GTCCTCTCCAGTCAAGAATT+AGG - tig0021410:42129-42148 None:intergenic 45.0%
CTTGAATAGCTAGGGATGGA+AGG - tig0021410:42167-42186 None:intergenic 45.0%
CTTCCATCCCTAGCTATTCA+AGG + tig0021410:42165-42184 Msa1391140:intron 45.0%
ATCCCTTGAATAGCTAGGGA+TGG - tig0021410:42171-42190 None:intergenic 45.0%
ATCCCTAGCTATTCAAGGGA+TGG + tig0021410:42170-42189 Msa1391140:intron 45.0%
TCCCTAGCTATTCAAGGGAT+GGG + tig0021410:42171-42190 Msa1391140:intron 45.0%
TTCAAGTCTACCGGTCTGTT+AGG + tig0021410:42292-42311 Msa1391140:intron 45.0%
TGCAGTAATGTATGCAGCTG+AGG - tig0021410:42321-42340 None:intergenic 45.0%
!! GAATAGGAGAGCACTCATCT+TGG + tig0021410:42489-42508 Msa1391140:CDS 45.0%
!! ATAGGAGAGCACTCATCTTG+GGG + tig0021410:42491-42510 Msa1391140:CDS 45.0%
TTTACCGTTGGCACGATAAC+TGG + tig0021410:42572-42591 Msa1391140:intron 45.0%
ATTAAAGCGGTACGTGAGCT+GGG - tig0021410:42705-42724 None:intergenic 45.0%
AGCTCACGTACCGCTTTAAT+GGG + tig0021410:42705-42724 Msa1391140:CDS 45.0%
CTGTAGTATGTTCCAAGGGT+TGG - tig0021410:42739-42758 None:intergenic 45.0%
GGAGCTGTAGTATGTTCCAA+GGG - tig0021410:42743-42762 None:intergenic 45.0%
TGGAGCTGTAGTATGTTCCA+AGG - tig0021410:42744-42763 None:intergenic 45.0%
TTGGAACATACTACAGCTCC+AGG + tig0021410:42743-42762 Msa1391140:CDS 45.0%
!! GAATTCTAGCTCTTCCAGAG+TGG + tig0021410:43088-43107 Msa1391140:intron 45.0%
ATGAAGCTTCACTGTTCCCT+GGG - tig0021410:43198-43217 None:intergenic 45.0%
TATGAAGCTTCACTGTTCCC+TGG - tig0021410:43199-43218 None:intergenic 45.0%
AGGGAACAGTGAAGCTTCAT+AGG + tig0021410:43198-43217 Msa1391140:intron 45.0%
GGGAACAGTGAAGCTTCATA+GGG + tig0021410:43199-43218 Msa1391140:intron 45.0%
TTCATAGGGTCTTTCTGTCC+AGG + tig0021410:43213-43232 Msa1391140:intron 45.0%
AGGTAGCGAAATTCCTTGTC+GGG - tig0021410:43337-43356 None:intergenic 45.0%
CCGTAACTATAACGGTCCTA+AGG - tig0021410:43357-43376 None:intergenic 45.0%
!! AAGTTGGTGACCTGATGACA+GGG - tig0021410:43412-43431 None:intergenic 45.0%
CACCAACTTCCTTAACCTTC+CGG + tig0021410:43423-43442 Msa1391140:CDS 45.0%
AGTCGTAAGACCATGTATGG+GGG - tig0021410:43466-43485 None:intergenic 45.0%
! TTTGCGGAGACCTGTGTTTT+TGG + tig0021410:43485-43504 Msa1391140:CDS 45.0%
GTTCGATATTCTGGTGTCCT+AGG - tig0021410:42052-42071 None:intergenic 45.0%
GTCAGGTCCTAATTCTTGAC+TGG + tig0021410:42119-42138 Msa1391140:intron 45.0%
GTCCTAATTCTTGACTGGAG+AGG + tig0021410:42124-42143 Msa1391140:intron 45.0%
GTCCTCTCCAGTCAAGAATT+AGG - tig0021410:42129-42148 None:intergenic 45.0%
CTTGAATAGCTAGGGATGGA+AGG - tig0021410:42167-42186 None:intergenic 45.0%
CTTCCATCCCTAGCTATTCA+AGG + tig0021410:42165-42184 Msa1391140:intron 45.0%
ATCCCTTGAATAGCTAGGGA+TGG - tig0021410:42171-42190 None:intergenic 45.0%
ATCCCTAGCTATTCAAGGGA+TGG + tig0021410:42170-42189 Msa1391140:intron 45.0%
TCCCTAGCTATTCAAGGGAT+GGG + tig0021410:42171-42190 Msa1391140:intron 45.0%
TTCAAGTCTACCGGTCTGTT+AGG + tig0021410:42292-42311 Msa1391140:intron 45.0%
TGCAGTAATGTATGCAGCTG+AGG - tig0021410:42321-42340 None:intergenic 45.0%
!! GAATAGGAGAGCACTCATCT+TGG + tig0021410:42489-42508 Msa1391140:CDS 45.0%
!! ATAGGAGAGCACTCATCTTG+GGG + tig0021410:42491-42510 Msa1391140:CDS 45.0%
TTTACCGTTGGCACGATAAC+TGG + tig0021410:42572-42591 Msa1391140:intron 45.0%
ATTAAAGCGGTACGTGAGCT+GGG - tig0021410:42705-42724 None:intergenic 45.0%
AGCTCACGTACCGCTTTAAT+GGG + tig0021410:42705-42724 Msa1391140:CDS 45.0%
CTGTAGTATGTTCCAAGGGT+TGG - tig0021410:42739-42758 None:intergenic 45.0%
GGAGCTGTAGTATGTTCCAA+GGG - tig0021410:42743-42762 None:intergenic 45.0%
TGGAGCTGTAGTATGTTCCA+AGG - tig0021410:42744-42763 None:intergenic 45.0%
TTGGAACATACTACAGCTCC+AGG + tig0021410:42743-42762 Msa1391140:CDS 45.0%
!! GAATTCTAGCTCTTCCAGAG+TGG + tig0021410:43088-43107 Msa1391140:intron 45.0%
ATGAAGCTTCACTGTTCCCT+GGG - tig0021410:43198-43217 None:intergenic 45.0%
TATGAAGCTTCACTGTTCCC+TGG - tig0021410:43199-43218 None:intergenic 45.0%
AGGGAACAGTGAAGCTTCAT+AGG + tig0021410:43198-43217 Msa1391140:intron 45.0%
GGGAACAGTGAAGCTTCATA+GGG + tig0021410:43199-43218 Msa1391140:intron 45.0%
TTCATAGGGTCTTTCTGTCC+AGG + tig0021410:43213-43232 Msa1391140:intron 45.0%
AGGTAGCGAAATTCCTTGTC+GGG - tig0021410:43337-43356 None:intergenic 45.0%
CCGTAACTATAACGGTCCTA+AGG - tig0021410:43357-43376 None:intergenic 45.0%
!! AAGTTGGTGACCTGATGACA+GGG - tig0021410:43412-43431 None:intergenic 45.0%
CACCAACTTCCTTAACCTTC+CGG + tig0021410:43423-43442 Msa1391140:CDS 45.0%
AGTCGTAAGACCATGTATGG+GGG - tig0021410:43466-43485 None:intergenic 45.0%
! TTTGCGGAGACCTGTGTTTT+TGG + tig0021410:43485-43504 Msa1391140:CDS 45.0%
TTGACTGGAGAGGACACCAA+AGG + tig0021410:42134-42153 Msa1391140:intron 50.0%
CCCCATCCCTTGAATAGCTA+GGG - tig0021410:42175-42194 None:intergenic 50.0%
CCCTAGCTATTCAAGGGATG+GGG + tig0021410:42172-42191 Msa1391140:intron 50.0%
CCTAGCTATTCAAGGGATGG+GGG + tig0021410:42173-42192 Msa1391140:intron 50.0%
CAGAGAACCCATCGCTGTTT+CGG + tig0021410:42437-42456 Msa1391140:CDS 50.0%
ATCACAGCCGAAACAGCGAT+GGG - tig0021410:42447-42466 None:intergenic 50.0%
TATCACAGCCGAAACAGCGA+TGG - tig0021410:42448-42467 None:intergenic 50.0%
TGTGCCAGTTATCGTGCCAA+CGG - tig0021410:42579-42598 None:intergenic 50.0%
TTTCCCTAGTACGAGAGGAC+CGG - tig0021410:42619-42638 None:intergenic 50.0%
GAGACAGTTCGGTCCATATC+CGG - tig0021410:42669-42688 None:intergenic 50.0%
CAGAACGTCGTGAGACAGTT+CGG - tig0021410:42680-42699 None:intergenic 50.0%
CATTAAAGCGGTACGTGAGC+TGG - tig0021410:42706-42725 None:intergenic 50.0%
CAGCTCACGTACCGCTTTAA+TGG + tig0021410:42704-42723 Msa1391140:CDS 50.0%
GAACATACTACAGCTCCAGG+TGG + tig0021410:42746-42765 Msa1391140:CDS 50.0%
AAGGTTTGGCACCTCGATGT+CGG - tig0021410:42779-42798 None:intergenic 50.0%
GTAGGCCTCCCAAAAGGTAA+CGG - tig0021410:43011-43030 None:intergenic 50.0%
AGACAGTTTCTATGGGGCGT+AGG - tig0021410:43029-43048 None:intergenic 50.0%
CTTGTGCCAGTACAGACCAA+GGG - tig0021410:43064-43083 None:intergenic 50.0%
CCATCAGTGAGATACCACTC+TGG - tig0021410:43105-43124 None:intergenic 50.0%
CCAGAGTGGTATCTCACTGA+TGG + tig0021410:43102-43121 Msa1391140:intron 50.0%
GCTTAGGTGGAAGGCAAAGA+AGG - tig0021410:43150-43169 None:intergenic 50.0%
AAAAGCCCAAAGCCAATCCC+AGG + tig0021410:43178-43197 Msa1391140:intron 50.0%
AAAGCCCAAAGCCAATCCCA+GGG + tig0021410:43179-43198 Msa1391140:intron 50.0%
!! TGTTCCCTGGGATTGGCTTT+GGG - tig0021410:43186-43205 None:intergenic 50.0%
! TAACGATCTGGGCACTGTCT+CGG - tig0021410:43289-43308 None:intergenic 50.0%
! CACGAAAGGCGTAACGATCT+GGG - tig0021410:43300-43319 None:intergenic 50.0%
AGATCGTTACGCCTTTCGTG+CGG + tig0021410:43300-43319 Msa1391140:CDS 50.0%
AACGGCGGCCGTAACTATAA+CGG - tig0021410:43365-43384 None:intergenic 50.0%
!! GAAGTTGGTGACCTGATGAC+AGG - tig0021410:43413-43432 None:intergenic 50.0%
TGCCGGAAGGTTAAGGAAGT+TGG - tig0021410:43428-43447 None:intergenic 50.0%
TTCCTTAACCTTCCGGCACT+GGG + tig0021410:43430-43449 Msa1391140:CDS 50.0%
TTGACTGGAGAGGACACCAA+AGG + tig0021410:42134-42153 Msa1391140:intron 50.0%
CCCCATCCCTTGAATAGCTA+GGG - tig0021410:42175-42194 None:intergenic 50.0%
CCCTAGCTATTCAAGGGATG+GGG + tig0021410:42172-42191 Msa1391140:intron 50.0%
CCTAGCTATTCAAGGGATGG+GGG + tig0021410:42173-42192 Msa1391140:intron 50.0%
CAGAGAACCCATCGCTGTTT+CGG + tig0021410:42437-42456 Msa1391140:CDS 50.0%
ATCACAGCCGAAACAGCGAT+GGG - tig0021410:42447-42466 None:intergenic 50.0%
TATCACAGCCGAAACAGCGA+TGG - tig0021410:42448-42467 None:intergenic 50.0%
TGTGCCAGTTATCGTGCCAA+CGG - tig0021410:42579-42598 None:intergenic 50.0%
TTTCCCTAGTACGAGAGGAC+CGG - tig0021410:42619-42638 None:intergenic 50.0%
GAGACAGTTCGGTCCATATC+CGG - tig0021410:42669-42688 None:intergenic 50.0%
CAGAACGTCGTGAGACAGTT+CGG - tig0021410:42680-42699 None:intergenic 50.0%
CATTAAAGCGGTACGTGAGC+TGG - tig0021410:42706-42725 None:intergenic 50.0%
CAGCTCACGTACCGCTTTAA+TGG + tig0021410:42704-42723 Msa1391140:CDS 50.0%
GAACATACTACAGCTCCAGG+TGG + tig0021410:42746-42765 Msa1391140:CDS 50.0%
AAGGTTTGGCACCTCGATGT+CGG - tig0021410:42779-42798 None:intergenic 50.0%
GTAGGCCTCCCAAAAGGTAA+CGG - tig0021410:43011-43030 None:intergenic 50.0%
AGACAGTTTCTATGGGGCGT+AGG - tig0021410:43029-43048 None:intergenic 50.0%
CTTGTGCCAGTACAGACCAA+GGG - tig0021410:43064-43083 None:intergenic 50.0%
CCATCAGTGAGATACCACTC+TGG - tig0021410:43105-43124 None:intergenic 50.0%
CCAGAGTGGTATCTCACTGA+TGG + tig0021410:43102-43121 Msa1391140:intron 50.0%
GCTTAGGTGGAAGGCAAAGA+AGG - tig0021410:43150-43169 None:intergenic 50.0%
AAAAGCCCAAAGCCAATCCC+AGG + tig0021410:43178-43197 Msa1391140:intron 50.0%
AAAGCCCAAAGCCAATCCCA+GGG + tig0021410:43179-43198 Msa1391140:intron 50.0%
!! TGTTCCCTGGGATTGGCTTT+GGG - tig0021410:43186-43205 None:intergenic 50.0%
! TAACGATCTGGGCACTGTCT+CGG - tig0021410:43289-43308 None:intergenic 50.0%
! CACGAAAGGCGTAACGATCT+GGG - tig0021410:43300-43319 None:intergenic 50.0%
AGATCGTTACGCCTTTCGTG+CGG + tig0021410:43300-43319 Msa1391140:CDS 50.0%
AACGGCGGCCGTAACTATAA+CGG - tig0021410:43365-43384 None:intergenic 50.0%
!! GAAGTTGGTGACCTGATGAC+AGG - tig0021410:43413-43432 None:intergenic 50.0%
TGCCGGAAGGTTAAGGAAGT+TGG - tig0021410:43428-43447 None:intergenic 50.0%
TTCCTTAACCTTCCGGCACT+GGG + tig0021410:43430-43449 Msa1391140:CDS 50.0%
TTCTGGTGTCCTAGGCGTAG+AGG - tig0021410:42044-42063 None:intergenic 55.0%
CCCCCATCCCTTGAATAGCT+AGG - tig0021410:42176-42195 None:intergenic 55.0%
ATTCAAGGGATGGGGGACAG+AGG + tig0021410:42180-42199 Msa1391140:intron 55.0%
! GCTGAGGCATCCTAACAGAC+CGG - tig0021410:42305-42324 None:intergenic 55.0%
! TTCTTTTGCTCCATCCCCGC+AGG + tig0021410:42412-42431 Msa1391140:intron 55.0%
! TCTTTTGCTCCATCCCCGCA+GGG + tig0021410:42413-42432 Msa1391140:intron 55.0%
! CGCTGTTTCGGCTGTGATAC+CGG + tig0021410:42449-42468 Msa1391140:CDS 55.0%
TGTTTCGGCTGTGATACCGG+AGG + tig0021410:42452-42471 Msa1391140:CDS 55.0%
!! GAGAGCACTCATCTTGGGGT+GGG + tig0021410:42495-42514 Msa1391140:intron 55.0%
AAACGCTGGGTAGCCAAGTG+CGG - tig0021410:42555-42574 None:intergenic 55.0%
TCGTGCCAACGGTAAACGCT+GGG - tig0021410:42568-42587 None:intergenic 55.0%
ATCGTGCCAACGGTAAACGC+TGG - tig0021410:42569-42588 None:intergenic 55.0%
CACGATAACTGGCACACCAG+AGG + tig0021410:42583-42602 Msa1391140:intron 55.0%
TTCCCGGTCCTCTCGTACTA+GGG + tig0021410:42613-42632 Msa1391140:intron 55.0%
TTCCCTAGTACGAGAGGACC+GGG - tig0021410:42618-42637 None:intergenic 55.0%
GGTCCTCTCGTACTAGGGAA+AGG + tig0021410:42618-42637 Msa1391140:intron 55.0%
GGACCTTTCCCTAGTACGAG+AGG - tig0021410:42624-42643 None:intergenic 55.0%
!! GTGGGCGTTAGAGCATTGAG+AGG - tig0021410:42645-42664 None:intergenic 55.0%
CAATGCTCTAACGCCCACAC+CGG + tig0021410:42647-42666 Msa1391140:CDS 55.0%
TCTAACGCCCACACCGGATA+TGG + tig0021410:42653-42672 Msa1391140:CDS 55.0%
GTTCGGTCCATATCCGGTGT+GGG - tig0021410:42663-42682 None:intergenic 55.0%
AGTTCGGTCCATATCCGGTG+TGG - tig0021410:42664-42683 None:intergenic 55.0%
GGGCTGTTCGCCCATTAAAG+CGG - tig0021410:42718-42737 None:intergenic 55.0%
CTCACATCGACGGGAAGGTT+TGG - tig0021410:42793-42812 None:intergenic 55.0%
AAGAGCTCACATCGACGGGA+AGG - tig0021410:42798-42817 None:intergenic 55.0%
TTCCCGTCGATGTGAGCTCT+TGG + tig0021410:42797-42816 Msa1391140:CDS 55.0%
TCCCGTCGATGTGAGCTCTT+GGG + tig0021410:42798-42817 Msa1391140:CDS 55.0%
TCCCCAAGAGCTCACATCGA+CGG - tig0021410:42803-42822 None:intergenic 55.0%
AGTCGGCCTTAGTGATCCGA+CGG - tig0021410:42888-42907 None:intergenic 55.0%
CCTCGAGTGCAAAGGCAGAA+GGG - tig0021410:42949-42968 None:intergenic 55.0%
CCTTCTGCCTTTGCACTCGA+GGG + tig0021410:42947-42966 Msa1391140:CDS 55.0%
! AGATTGGCCCTCGAGTGCAA+AGG - tig0021410:42957-42976 None:intergenic 55.0%
AAAGGTTTCCTCGGGCCAGA+CGG - tig0021410:42980-42999 None:intergenic 55.0%
AGGCGTGCAAAGGTTTCCTC+GGG - tig0021410:42988-43007 None:intergenic 55.0%
GAGGCGTGCAAAGGTTTCCT+CGG - tig0021410:42989-43008 None:intergenic 55.0%
!! AAGGTAACGGAGGCGTGCAA+AGG - tig0021410:42998-43017 None:intergenic 55.0%
! TGCACGCCTCCGTTACCTTT+TGG + tig0021410:42999-43018 Msa1391140:CDS 55.0%
! GCACGCCTCCGTTACCTTTT+GGG + tig0021410:43000-43019 Msa1391140:CDS 55.0%
GTCTACCTGAGACTGTCCCT+TGG + tig0021410:43045-43064 Msa1391140:CDS 55.0%
ACAGACCAAGGGACAGTCTC+AGG - tig0021410:43053-43072 None:intergenic 55.0%
GACTGTCCCTTGGTCTGTAC+TGG + tig0021410:43055-43074 Msa1391140:CDS 55.0%
CCTTGTGCCAGTACAGACCA+AGG - tig0021410:43065-43084 None:intergenic 55.0%
! CCTTGGTCTGTACTGGCACA+AGG + tig0021410:43062-43081 Msa1391140:CDS 55.0%
AGGCAAAGAAGGCCTCCTTC+CGG - tig0021410:43139-43158 None:intergenic 55.0%
! CTTTTCCTGCGCAGCTTAGG+TGG - tig0021410:43163-43182 None:intergenic 55.0%
!! CTGTTCCCTGGGATTGGCTT+TGG - tig0021410:43187-43206 None:intergenic 55.0%
GCTTCACTGTTCCCTGGGAT+TGG - tig0021410:43193-43212 None:intergenic 55.0%
! GCACGAAAGGCGTAACGATC+TGG - tig0021410:43301-43320 None:intergenic 55.0%
GATCGTTACGCCTTTCGTGC+GGG + tig0021410:43301-43320 Msa1391140:CDS 55.0%
TAAGTTCCGACCCGCACGAA+AGG - tig0021410:43314-43333 None:intergenic 55.0%
TGACCTGATGACAGGGAAGC+CGG - tig0021410:43405-43424 None:intergenic 55.0%
CTTCCTTAACCTTCCGGCAC+TGG + tig0021410:43429-43448 Msa1391140:CDS 55.0%
TTCTGGTGTCCTAGGCGTAG+AGG - tig0021410:42044-42063 None:intergenic 55.0%
CCCCCATCCCTTGAATAGCT+AGG - tig0021410:42176-42195 None:intergenic 55.0%
ATTCAAGGGATGGGGGACAG+AGG + tig0021410:42180-42199 Msa1391140:intron 55.0%
! GCTGAGGCATCCTAACAGAC+CGG - tig0021410:42305-42324 None:intergenic 55.0%
! TTCTTTTGCTCCATCCCCGC+AGG + tig0021410:42412-42431 Msa1391140:intron 55.0%
! TCTTTTGCTCCATCCCCGCA+GGG + tig0021410:42413-42432 Msa1391140:intron 55.0%
! CGCTGTTTCGGCTGTGATAC+CGG + tig0021410:42449-42468 Msa1391140:CDS 55.0%
TGTTTCGGCTGTGATACCGG+AGG + tig0021410:42452-42471 Msa1391140:CDS 55.0%
!! GAGAGCACTCATCTTGGGGT+GGG + tig0021410:42495-42514 Msa1391140:intron 55.0%
AAACGCTGGGTAGCCAAGTG+CGG - tig0021410:42555-42574 None:intergenic 55.0%
TCGTGCCAACGGTAAACGCT+GGG - tig0021410:42568-42587 None:intergenic 55.0%
ATCGTGCCAACGGTAAACGC+TGG - tig0021410:42569-42588 None:intergenic 55.0%
CACGATAACTGGCACACCAG+AGG + tig0021410:42583-42602 Msa1391140:intron 55.0%
TTCCCGGTCCTCTCGTACTA+GGG + tig0021410:42613-42632 Msa1391140:intron 55.0%
TTCCCTAGTACGAGAGGACC+GGG - tig0021410:42618-42637 None:intergenic 55.0%
GGTCCTCTCGTACTAGGGAA+AGG + tig0021410:42618-42637 Msa1391140:intron 55.0%
GGACCTTTCCCTAGTACGAG+AGG - tig0021410:42624-42643 None:intergenic 55.0%
!! GTGGGCGTTAGAGCATTGAG+AGG - tig0021410:42645-42664 None:intergenic 55.0%
CAATGCTCTAACGCCCACAC+CGG + tig0021410:42647-42666 Msa1391140:CDS 55.0%
TCTAACGCCCACACCGGATA+TGG + tig0021410:42653-42672 Msa1391140:CDS 55.0%
GTTCGGTCCATATCCGGTGT+GGG - tig0021410:42663-42682 None:intergenic 55.0%
AGTTCGGTCCATATCCGGTG+TGG - tig0021410:42664-42683 None:intergenic 55.0%
GGGCTGTTCGCCCATTAAAG+CGG - tig0021410:42718-42737 None:intergenic 55.0%
CTCACATCGACGGGAAGGTT+TGG - tig0021410:42793-42812 None:intergenic 55.0%
AAGAGCTCACATCGACGGGA+AGG - tig0021410:42798-42817 None:intergenic 55.0%
TTCCCGTCGATGTGAGCTCT+TGG + tig0021410:42797-42816 Msa1391140:CDS 55.0%
TCCCGTCGATGTGAGCTCTT+GGG + tig0021410:42798-42817 Msa1391140:CDS 55.0%
TCCCCAAGAGCTCACATCGA+CGG - tig0021410:42803-42822 None:intergenic 55.0%
AGTCGGCCTTAGTGATCCGA+CGG - tig0021410:42888-42907 None:intergenic 55.0%
CCTCGAGTGCAAAGGCAGAA+GGG - tig0021410:42949-42968 None:intergenic 55.0%
CCTTCTGCCTTTGCACTCGA+GGG + tig0021410:42947-42966 Msa1391140:CDS 55.0%
! AGATTGGCCCTCGAGTGCAA+AGG - tig0021410:42957-42976 None:intergenic 55.0%
AAAGGTTTCCTCGGGCCAGA+CGG - tig0021410:42980-42999 None:intergenic 55.0%
AGGCGTGCAAAGGTTTCCTC+GGG - tig0021410:42988-43007 None:intergenic 55.0%
GAGGCGTGCAAAGGTTTCCT+CGG - tig0021410:42989-43008 None:intergenic 55.0%
!! AAGGTAACGGAGGCGTGCAA+AGG - tig0021410:42998-43017 None:intergenic 55.0%
! TGCACGCCTCCGTTACCTTT+TGG + tig0021410:42999-43018 Msa1391140:CDS 55.0%
! GCACGCCTCCGTTACCTTTT+GGG + tig0021410:43000-43019 Msa1391140:CDS 55.0%
GTCTACCTGAGACTGTCCCT+TGG + tig0021410:43045-43064 Msa1391140:CDS 55.0%
ACAGACCAAGGGACAGTCTC+AGG - tig0021410:43053-43072 None:intergenic 55.0%
GACTGTCCCTTGGTCTGTAC+TGG + tig0021410:43055-43074 Msa1391140:CDS 55.0%
CCTTGTGCCAGTACAGACCA+AGG - tig0021410:43065-43084 None:intergenic 55.0%
! CCTTGGTCTGTACTGGCACA+AGG + tig0021410:43062-43081 Msa1391140:CDS 55.0%
AGGCAAAGAAGGCCTCCTTC+CGG - tig0021410:43139-43158 None:intergenic 55.0%
! CTTTTCCTGCGCAGCTTAGG+TGG - tig0021410:43163-43182 None:intergenic 55.0%
!! CTGTTCCCTGGGATTGGCTT+TGG - tig0021410:43187-43206 None:intergenic 55.0%
GCTTCACTGTTCCCTGGGAT+TGG - tig0021410:43193-43212 None:intergenic 55.0%
! GCACGAAAGGCGTAACGATC+TGG - tig0021410:43301-43320 None:intergenic 55.0%
GATCGTTACGCCTTTCGTGC+GGG + tig0021410:43301-43320 Msa1391140:CDS 55.0%
TAAGTTCCGACCCGCACGAA+AGG - tig0021410:43314-43333 None:intergenic 55.0%
TGACCTGATGACAGGGAAGC+CGG - tig0021410:43405-43424 None:intergenic 55.0%
CTTCCTTAACCTTCCGGCAC+TGG + tig0021410:43429-43448 Msa1391140:CDS 55.0%
GGTGTGGTTCCTCTACGCCT+AGG + tig0021410:42032-42051 Msa1391140:CDS 60.0%
GATGGAAGGGCAGAGGCCTT+TGG - tig0021410:42153-42172 None:intergenic 60.0%
AGCTAGGGATGGAAGGGCAG+AGG - tig0021410:42160-42179 None:intergenic 60.0%
! GGGATGGGGGACAGAGGTTT+TGG + tig0021410:42186-42205 Msa1391140:intron 60.0%
! CTTTTGCTCCATCCCCGCAG+GGG + tig0021410:42414-42433 Msa1391140:intron 60.0%
GCTGTGATACCGGAGGCTCT+GGG + tig0021410:42459-42478 Msa1391140:CDS 60.0%
CTGTGATACCGGAGGCTCTG+GGG + tig0021410:42460-42479 Msa1391140:CDS 60.0%
!! GGCTCTGGGGAAGTCGGAAT+AGG + tig0021410:42473-42492 Msa1391140:CDS 60.0%
!! GGAGAGCACTCATCTTGGGG+TGG + tig0021410:42494-42513 Msa1391140:intron 60.0%
GCAGTTATCCGCTCCGCACT+TGG + tig0021410:42539-42558 Msa1391140:intron 60.0%
GGCTACCCAGCGTTTACCGT+TGG + tig0021410:42560-42579 Msa1391140:intron 60.0%
CTAGTACGAGAGGACCGGGA+AGG - tig0021410:42614-42633 None:intergenic 60.0%
CTTCCCGGTCCTCTCGTACT+AGG + tig0021410:42612-42631 Msa1391140:intron 60.0%
CCCCAAGAGCTCACATCGAC+GGG - tig0021410:42802-42821 None:intergenic 60.0%
CCCGTCGATGTGAGCTCTTG+GGG + tig0021410:42799-42818 Msa1391140:CDS 60.0%
TCGGCACCGTCGGATCACTA+AGG + tig0021410:42879-42898 Msa1391140:intron 60.0%
CGTCGAGCAGGGACGAAAGT+CGG - tig0021410:42905-42924 None:intergenic 60.0%
CGACTTTCGTCCCTGCTCGA+CGG + tig0021410:42903-42922 Msa1391140:intron 60.0%
GACTTTCGTCCCTGCTCGAC+GGG + tig0021410:42904-42923 Msa1391140:intron 60.0%
CCCTTCTGCCTTTGCACTCG+AGG + tig0021410:42946-42965 Msa1391140:CDS 60.0%
CCCTCGAGTGCAAAGGCAGA+AGG - tig0021410:42950-42969 None:intergenic 60.0%
! CGCCTCCGTTACCTTTTGGG+AGG + tig0021410:43003-43022 Msa1391140:CDS 60.0%
! GGCCTCCCAAAAGGTAACGG+AGG - tig0021410:43008-43027 None:intergenic 60.0%
AAAGAAGGCCTCCTTCCGGG+GGG - tig0021410:43135-43154 None:intergenic 60.0%
CAAAGAAGGCCTCCTTCCGG+GGG - tig0021410:43136-43155 None:intergenic 60.0%
GCAAAGAAGGCCTCCTTCCG+GGG - tig0021410:43137-43156 None:intergenic 60.0%
GGCAAAGAAGGCCTCCTTCC+GGG - tig0021410:43138-43157 None:intergenic 60.0%
TCCTGCGCAGCTTAGGTGGA+AGG - tig0021410:43159-43178 None:intergenic 60.0%
! GGGCTTTTCCTGCGCAGCTT+AGG - tig0021410:43166-43185 None:intergenic 60.0%
GGGTCTTTCTGTCCAGGTGC+AGG + tig0021410:43219-43238 Msa1391140:intron 60.0%
! AGATGCGGACTACCTGCACC+TGG - tig0021410:43234-43253 None:intergenic 60.0%
CACTGTCTCGGAGAGAGGCT+CGG - tig0021410:43277-43296 None:intergenic 60.0%
GTTACGCCTTTCGTGCGGGT+CGG + tig0021410:43305-43324 Msa1391140:CDS 60.0%
GGGTCGGAACTTACCCGACA+AGG + tig0021410:43321-43340 Msa1391140:CDS 60.0%
TAGTTACGGCCGCCGTTCAC+CGG + tig0021410:43368-43387 Msa1391140:CDS 60.0%
! TGCCCAGTGCCGGAAGGTTA+AGG - tig0021410:43435-43454 None:intergenic 60.0%
! TTAACCTTCCGGCACTGGGC+AGG + tig0021410:43434-43453 Msa1391140:CDS 60.0%
GGTGTGGTTCCTCTACGCCT+AGG + tig0021410:42032-42051 Msa1391140:CDS 60.0%
GATGGAAGGGCAGAGGCCTT+TGG - tig0021410:42153-42172 None:intergenic 60.0%
AGCTAGGGATGGAAGGGCAG+AGG - tig0021410:42160-42179 None:intergenic 60.0%
! GGGATGGGGGACAGAGGTTT+TGG + tig0021410:42186-42205 Msa1391140:intron 60.0%
! CTTTTGCTCCATCCCCGCAG+GGG + tig0021410:42414-42433 Msa1391140:intron 60.0%
GCTGTGATACCGGAGGCTCT+GGG + tig0021410:42459-42478 Msa1391140:CDS 60.0%
CTGTGATACCGGAGGCTCTG+GGG + tig0021410:42460-42479 Msa1391140:CDS 60.0%
!! GGCTCTGGGGAAGTCGGAAT+AGG + tig0021410:42473-42492 Msa1391140:CDS 60.0%
!! GGAGAGCACTCATCTTGGGG+TGG + tig0021410:42494-42513 Msa1391140:intron 60.0%
GCAGTTATCCGCTCCGCACT+TGG + tig0021410:42539-42558 Msa1391140:intron 60.0%
GGCTACCCAGCGTTTACCGT+TGG + tig0021410:42560-42579 Msa1391140:intron 60.0%
CTAGTACGAGAGGACCGGGA+AGG - tig0021410:42614-42633 None:intergenic 60.0%
CTTCCCGGTCCTCTCGTACT+AGG + tig0021410:42612-42631 Msa1391140:intron 60.0%
CCCCAAGAGCTCACATCGAC+GGG - tig0021410:42802-42821 None:intergenic 60.0%
CCCGTCGATGTGAGCTCTTG+GGG + tig0021410:42799-42818 Msa1391140:CDS 60.0%
TCGGCACCGTCGGATCACTA+AGG + tig0021410:42879-42898 Msa1391140:intron 60.0%
CGTCGAGCAGGGACGAAAGT+CGG - tig0021410:42905-42924 None:intergenic 60.0%
CGACTTTCGTCCCTGCTCGA+CGG + tig0021410:42903-42922 Msa1391140:intron 60.0%
GACTTTCGTCCCTGCTCGAC+GGG + tig0021410:42904-42923 Msa1391140:intron 60.0%
CCCTTCTGCCTTTGCACTCG+AGG + tig0021410:42946-42965 Msa1391140:CDS 60.0%
CCCTCGAGTGCAAAGGCAGA+AGG - tig0021410:42950-42969 None:intergenic 60.0%
! CGCCTCCGTTACCTTTTGGG+AGG + tig0021410:43003-43022 Msa1391140:CDS 60.0%
! GGCCTCCCAAAAGGTAACGG+AGG - tig0021410:43008-43027 None:intergenic 60.0%
AAAGAAGGCCTCCTTCCGGG+GGG - tig0021410:43135-43154 None:intergenic 60.0%
CAAAGAAGGCCTCCTTCCGG+GGG - tig0021410:43136-43155 None:intergenic 60.0%
GCAAAGAAGGCCTCCTTCCG+GGG - tig0021410:43137-43156 None:intergenic 60.0%
GGCAAAGAAGGCCTCCTTCC+GGG - tig0021410:43138-43157 None:intergenic 60.0%
TCCTGCGCAGCTTAGGTGGA+AGG - tig0021410:43159-43178 None:intergenic 60.0%
! GGGCTTTTCCTGCGCAGCTT+AGG - tig0021410:43166-43185 None:intergenic 60.0%
GGGTCTTTCTGTCCAGGTGC+AGG + tig0021410:43219-43238 Msa1391140:intron 60.0%
! AGATGCGGACTACCTGCACC+TGG - tig0021410:43234-43253 None:intergenic 60.0%
CACTGTCTCGGAGAGAGGCT+CGG - tig0021410:43277-43296 None:intergenic 60.0%
GTTACGCCTTTCGTGCGGGT+CGG + tig0021410:43305-43324 Msa1391140:CDS 60.0%
GGGTCGGAACTTACCCGACA+AGG + tig0021410:43321-43340 Msa1391140:CDS 60.0%
TAGTTACGGCCGCCGTTCAC+CGG + tig0021410:43368-43387 Msa1391140:CDS 60.0%
! TGCCCAGTGCCGGAAGGTTA+AGG - tig0021410:43435-43454 None:intergenic 60.0%
! TTAACCTTCCGGCACTGGGC+AGG + tig0021410:43434-43453 Msa1391140:CDS 60.0%
ATGGGTTCTCTGCCCCTGCG+GGG - tig0021410:42429-42448 None:intergenic 65.0%
! GATGGGTTCTCTGCCCCTGC+GGG - tig0021410:42430-42449 None:intergenic 65.0%
! CGATGGGTTCTCTGCCCCTG+CGG - tig0021410:42431-42450 None:intergenic 65.0%
GGCTGTGATACCGGAGGCTC+TGG + tig0021410:42458-42477 Msa1391140:CDS 65.0%
!! ACCGGAGGCTCTGGGGAAGT+CGG + tig0021410:42467-42486 Msa1391140:CDS 65.0%
TCCGACTTCCCCAGAGCCTC+CGG - tig0021410:42471-42490 None:intergenic 65.0%
CTGGGTAGCCAAGTGCGGAG+CGG - tig0021410:42550-42569 None:intergenic 65.0%
! CACCAGAGGTGCGTCCTTCC+CGG + tig0021410:42597-42616 Msa1391140:intron 65.0%
TGGGCGAACAGCCCAACCCT+TGG + tig0021410:42724-42743 Msa1391140:CDS 65.0%
!! GATGTCGGCTCTTCGCCACC+TGG - tig0021410:42764-42783 None:intergenic 65.0%
GTGGCGAAGAGCCGACATCG+AGG + tig0021410:42765-42784 Msa1391140:CDS 65.0%
GTGGAAGGGCCGTCGCTCAA+CGG - tig0021410:42859-42878 None:intergenic 65.0%
TGAGCGACGGCCCTTCCACT+CGG + tig0021410:42860-42879 Msa1391140:intron 65.0%
! TCCGACGGTGCCGAGTGGAA+GGG - tig0021410:42873-42892 None:intergenic 65.0%
! ATCCGACGGTGCCGAGTGGA+AGG - tig0021410:42874-42893 None:intergenic 65.0%
! AGTGATCCGACGGTGCCGAG+TGG - tig0021410:42878-42897 None:intergenic 65.0%
TTTCGTCCCTGCTCGACGGG+TGG + tig0021410:42907-42926 Msa1391140:intron 65.0%
TTCGTCCCTGCTCGACGGGT+GGG + tig0021410:42908-42927 Msa1391140:intron 65.0%
CAAGACCCACCCGTCGAGCA+GGG - tig0021410:42916-42935 None:intergenic 65.0%
CTCGAGGGCCAATCTCCGTC+TGG + tig0021410:42962-42981 Msa1391140:CDS 65.0%
TCCTCGGGCCAGACGGAGAT+TGG - tig0021410:42973-42992 None:intergenic 65.0%
TGGGGCGTAGGCCTCCCAAA+AGG - tig0021410:43017-43036 None:intergenic 65.0%
AAGAAGGCCTCCTTCCGGGG+GGG - tig0021410:43134-43153 None:intergenic 65.0%
GCCTTCCACCTAAGCTGCGC+AGG + tig0021410:43155-43174 Msa1391140:intron 65.0%
! CTGGGCACTGTCTCGGAGAG+AGG - tig0021410:43282-43301 None:intergenic 65.0%
AGTTACGGCCGCCGTTCACC+GGG + tig0021410:43369-43388 Msa1391140:CDS 65.0%
!! TCGCCGGCTTCCCTGTCATC+AGG + tig0021410:43399-43418 Msa1391140:CDS 65.0%
CAGGCGTCAGCCCCCATACA+TGG + tig0021410:43453-43472 Msa1391140:CDS 65.0%
ATGGGTTCTCTGCCCCTGCG+GGG - tig0021410:42429-42448 None:intergenic 65.0%
! GATGGGTTCTCTGCCCCTGC+GGG - tig0021410:42430-42449 None:intergenic 65.0%
! CGATGGGTTCTCTGCCCCTG+CGG - tig0021410:42431-42450 None:intergenic 65.0%
GGCTGTGATACCGGAGGCTC+TGG + tig0021410:42458-42477 Msa1391140:CDS 65.0%
!! ACCGGAGGCTCTGGGGAAGT+CGG + tig0021410:42467-42486 Msa1391140:CDS 65.0%
TCCGACTTCCCCAGAGCCTC+CGG - tig0021410:42471-42490 None:intergenic 65.0%
CTGGGTAGCCAAGTGCGGAG+CGG - tig0021410:42550-42569 None:intergenic 65.0%
! CACCAGAGGTGCGTCCTTCC+CGG + tig0021410:42597-42616 Msa1391140:intron 65.0%
TGGGCGAACAGCCCAACCCT+TGG + tig0021410:42724-42743 Msa1391140:CDS 65.0%
!! GATGTCGGCTCTTCGCCACC+TGG - tig0021410:42764-42783 None:intergenic 65.0%
GTGGCGAAGAGCCGACATCG+AGG + tig0021410:42765-42784 Msa1391140:CDS 65.0%
GTGGAAGGGCCGTCGCTCAA+CGG - tig0021410:42859-42878 None:intergenic 65.0%
TGAGCGACGGCCCTTCCACT+CGG + tig0021410:42860-42879 Msa1391140:intron 65.0%
! TCCGACGGTGCCGAGTGGAA+GGG - tig0021410:42873-42892 None:intergenic 65.0%
! ATCCGACGGTGCCGAGTGGA+AGG - tig0021410:42874-42893 None:intergenic 65.0%
! AGTGATCCGACGGTGCCGAG+TGG - tig0021410:42878-42897 None:intergenic 65.0%
TTTCGTCCCTGCTCGACGGG+TGG + tig0021410:42907-42926 Msa1391140:intron 65.0%
TTCGTCCCTGCTCGACGGGT+GGG + tig0021410:42908-42927 Msa1391140:intron 65.0%
CAAGACCCACCCGTCGAGCA+GGG - tig0021410:42916-42935 None:intergenic 65.0%
CTCGAGGGCCAATCTCCGTC+TGG + tig0021410:42962-42981 Msa1391140:CDS 65.0%
TCCTCGGGCCAGACGGAGAT+TGG - tig0021410:42973-42992 None:intergenic 65.0%
TGGGGCGTAGGCCTCCCAAA+AGG - tig0021410:43017-43036 None:intergenic 65.0%
AAGAAGGCCTCCTTCCGGGG+GGG - tig0021410:43134-43153 None:intergenic 65.0%
GCCTTCCACCTAAGCTGCGC+AGG + tig0021410:43155-43174 Msa1391140:intron 65.0%
! CTGGGCACTGTCTCGGAGAG+AGG - tig0021410:43282-43301 None:intergenic 65.0%
AGTTACGGCCGCCGTTCACC+GGG + tig0021410:43369-43388 Msa1391140:CDS 65.0%
!! TCGCCGGCTTCCCTGTCATC+AGG + tig0021410:43399-43418 Msa1391140:CDS 65.0%
CAGGCGTCAGCCCCCATACA+TGG + tig0021410:43453-43472 Msa1391140:CDS 65.0%
GTTCTCTGCCCCTGCGGGGA+TGG - tig0021410:42425-42444 None:intergenic 70.0%
GACCGGGAAGGACGCACCTC+TGG - tig0021410:42602-42621 None:intergenic 70.0%
GCCCTTCCACTCGGCACCGT+CGG + tig0021410:42869-42888 Msa1391140:intron 70.0%
GCAAGACCCACCCGTCGAGC+AGG - tig0021410:42917-42936 None:intergenic 70.0%
GCCAATCTCCGTCTGGCCCG+AGG + tig0021410:42969-42988 Msa1391140:CDS 70.0%
ACTGATGGCTCGAGCCCCCC+CGG + tig0021410:43117-43136 Msa1391140:intron 70.0%
GTTACGGCCGCCGTTCACCG+GGG + tig0021410:43370-43389 Msa1391140:CDS 70.0%
ACCGAAGCCCCGGTGAACGG+CGG - tig0021410:43380-43399 None:intergenic 70.0%
GCGACCGAAGCCCCGGTGAA+CGG - tig0021410:43383-43402 None:intergenic 70.0%
TTCACCGGGGCTTCGGTCGC+CGG + tig0021410:43383-43402 Msa1391140:CDS 70.0%
GTTCTCTGCCCCTGCGGGGA+TGG - tig0021410:42425-42444 None:intergenic 70.0%
GACCGGGAAGGACGCACCTC+TGG - tig0021410:42602-42621 None:intergenic 70.0%
GCCCTTCCACTCGGCACCGT+CGG + tig0021410:42869-42888 Msa1391140:intron 70.0%
GCAAGACCCACCCGTCGAGC+AGG - tig0021410:42917-42936 None:intergenic 70.0%
GCCAATCTCCGTCTGGCCCG+AGG + tig0021410:42969-42988 Msa1391140:CDS 70.0%
ACTGATGGCTCGAGCCCCCC+CGG + tig0021410:43117-43136 Msa1391140:intron 70.0%
GTTACGGCCGCCGTTCACCG+GGG + tig0021410:43370-43389 Msa1391140:CDS 70.0%
ACCGAAGCCCCGGTGAACGG+CGG - tig0021410:43380-43399 None:intergenic 70.0%
GCGACCGAAGCCCCGGTGAA+CGG - tig0021410:43383-43402 None:intergenic 70.0%
TTCACCGGGGCTTCGGTCGC+CGG + tig0021410:43383-43402 Msa1391140:CDS 70.0%
ATGGCTCGAGCCCCCCCGGA+AGG + tig0021410:43121-43140 Msa1391140:intron 75.0%
GCCGCCGTTCACCGGGGCTT+CGG + tig0021410:43376-43395 Msa1391140:CDS 75.0%
GAAGCCGGCGACCGAAGCCC+CGG - tig0021410:43390-43409 None:intergenic 75.0%
! GACGCCTGCCCAGTGCCGGA+AGG - tig0021410:43441-43460 None:intergenic 75.0%
GGCTGACGCCTGCCCAGTGC+CGG - tig0021410:43445-43464 None:intergenic 75.0%
ATGGCTCGAGCCCCCCCGGA+AGG + tig0021410:43121-43140 Msa1391140:intron 75.0%
GCCGCCGTTCACCGGGGCTT+CGG + tig0021410:43376-43395 Msa1391140:CDS 75.0%
GAAGCCGGCGACCGAAGCCC+CGG - tig0021410:43390-43409 None:intergenic 75.0%
! GACGCCTGCCCAGTGCCGGA+AGG - tig0021410:43441-43460 None:intergenic 75.0%
GGCTGACGCCTGCCCAGTGC+CGG - tig0021410:43445-43464 None:intergenic 75.0%
! GCTCGAGCCCCCCCGGAAGG+AGG + tig0021410:43124-43143 Msa1391140:intron 80.0%
! GCTCGAGCCCCCCCGGAAGG+AGG + tig0021410:43124-43143 Msa1391140:intron 80.0%
Chromosome Type Strat End Strand Name
tig0021410 gene 42025 43510 42025 ID=Msa1391140;Name=Msa1391140
tig0021410 mRNA 42025 43510 42025 ID=Msa1391140-mRNA-1;Parent=Msa1391140;Name=Msa1391140-mRNA-1;_AED=0.47;_eAED=0.73;_QI=0|0|0|0.5|1|1|6|0|280
tig0021410 exon 42025 42081 42025 ID=Msa1391140-mRNA-1:exon:12533;Parent=Msa1391140-mRNA-1
tig0021410 exon 42200 42274 42200 ID=Msa1391140-mRNA-1:exon:12534;Parent=Msa1391140-mRNA-1
tig0021410 exon 42434 42512 42434 ID=Msa1391140-mRNA-1:exon:12535;Parent=Msa1391140-mRNA-1
tig0021410 exon 42634 42844 42634 ID=Msa1391140-mRNA-1:exon:12536;Parent=Msa1391140-mRNA-1
tig0021410 exon 42939 43083 42939 ID=Msa1391140-mRNA-1:exon:12537;Parent=Msa1391140-mRNA-1
tig0021410 exon 43235 43510 43235 ID=Msa1391140-mRNA-1:exon:12538;Parent=Msa1391140-mRNA-1
tig0021410 CDS 42025 42081 42025 ID=Msa1391140-mRNA-1:cds;Parent=Msa1391140-mRNA-1
tig0021410 CDS 42200 42274 42200 ID=Msa1391140-mRNA-1:cds;Parent=Msa1391140-mRNA-1
tig0021410 CDS 42434 42512 42434 ID=Msa1391140-mRNA-1:cds;Parent=Msa1391140-mRNA-1
tig0021410 CDS 42634 42844 42634 ID=Msa1391140-mRNA-1:cds;Parent=Msa1391140-mRNA-1
tig0021410 CDS 42939 43083 42939 ID=Msa1391140-mRNA-1:cds;Parent=Msa1391140-mRNA-1
tig0021410 CDS 43235 43510 43235 ID=Msa1391140-mRNA-1:cds;Parent=Msa1391140-mRNA-1
Gene Sequence

>Msa1391140

ATGGATTGGTGTGGTTCCTCTACGCCTAGGACACCAGAATATCGAACCATGAACGAAAGGTTTTGGTTTTTTCATGTTGTCAAAGAGTTGAACAATCAAAATAGATGGCGATTGCCTGATCGAATTGATCAGGGGCAGAGAACCCATCGCTGTTTCGGCTGTGATACCGGAGGCTCTGGGGAAGTCGGAATAGGAGAGCACTCATCTTGGGGGAAAGGTCCTCTCAATGCTCTAACGCCCACACCGGATATGGACCGAACTGTCTCACGACGTTCTGAACCCAGCTCACGTACCGCTTTAATGGGCGAACAGCCCAACCCTTGGAACATACTACAGCTCCAGGTGGCGAAGAGCCGACATCGAGGTGCCAAACCTTCCCGTCGATGTGAGCTCTTGGGGAAGATCAGCCTGTTATCCCTAGATCAAGCTCCCTTCTGCCTTTGCACTCGAGGGCCAATCTCCGTCTGGCCCGAGGAAACCTTTGCACGCCTCCGTTACCTTTTGGGAGGCCTACGCCCCATAGAAACTGTCTACCTGAGACTGTCCCTTGGTCTGTACTGGCACAAGGTGCAGGTAGTCCGCATCTTCACAGACATGTCTATTTCACCGAGCCTCTCTCCGAGACAGTGCCCAGATCGTTACGCCTTTCGTGCGGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTATAGTTACGGCCGCCGTTCACCGGGGCTTCGGTCGCCGGCTTCCCTGTCATCAGGTCACCAACTTCCTTAACCTTCCGGCACTGGGCAGGCGTCAGCCCCCATACATGGTCTTACGACTTTGCGGAGACCTGTGTTTTTGGTAA
Protein sequence

>Msa1391140

MDWCGSSTPRTPEYRTMNERFWFFHVVKELNNQNRWRLPDRIDQGQRTHRCFGCDTGGSGEVGIGEHSSWGKGPLNALTPTPDMDRTVSRRSEPSSRTALMGEQPNPWNILQLQVAKSRHRGAKPSRRCELLGKISLLSLDQAPFCLCTRGPISVWPEETFARLRYLLGGLRPIETVYLRLSLGLYWHKVQVVRIFTDMSISPSLSPRQCPDRYAFRAGRNLPDKEFRYLRTVIVTAAVHRGFGRRLPCHQVTNFLNLPALGRRQPPYMVLRLCGDLCFW*