AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0787150


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0787150 MtrunA17_Chr5g0442391 98.951 572 6 0 1 572 1 572 0.0 1162
Msa0787150 MtrunA17_Chr3g0095501 76.936 581 125 5 1 572 1 581 0.0 875
Msa0787150 MtrunA17_Chr1g0183051 47.600 500 257 3 53 549 7 504 1.71e-162 473
Msa0787150 MtrunA17_Chr3g0095471 57.093 289 109 5 1 282 1 281 1.73e-89 278
Msa0787150 MtrunA17_Chr1g0185501 30.233 301 201 7 253 548 16 312 7.70e-39 145
Msa0787150 MtrunA17_Chr4g0067151 26.623 308 212 7 253 548 16 321 4.42e-29 117
Msa0787150 MtrunA17_Chr4g0067151 27.536 138 96 2 250 384 148 284 1.93e-11 65.5
Msa0787150 MtrunA17_Chr8g0383711 24.242 297 220 5 252 548 6 297 4.13e-24 102
Msa0787150 MtrunA17_Chr7g0253861 22.074 299 221 8 257 547 48 342 1.07e-18 87.8
Msa0787150 MtrunA17_Chr5g0401661 25.305 328 200 10 257 551 328 643 3.56e-17 85.1
Msa0787150 MtrunA17_Chr5g0401661 27.011 174 113 4 257 420 513 682 1.43e-12 70.5
Msa0787150 MtrunA17_Chr1g0176241 27.213 305 186 12 263 552 160 443 6.43e-17 83.6
Msa0787150 MtrunA17_Chr5g0401671 25.382 327 199 10 257 551 240 553 9.91e-17 83.6
Msa0787150 MtrunA17_Chr5g0401671 27.011 174 113 4 257 420 423 592 1.06e-11 67.8
Msa0787150 MtrunA17_Chr5g0401671 22.881 236 154 8 343 559 240 466 4.38e-11 65.9
Msa0787150 MtrunA17_Chr3g0136971 31.214 173 111 5 263 431 460 628 1.68e-16 83.2
Msa0787150 MtrunA17_Chr4g0053651 24.159 327 211 8 252 550 218 535 3.04e-15 79.0
Msa0787150 MtrunA17_Chr5g0405851 27.941 204 138 6 232 430 261 460 4.09e-13 71.6
Msa0787150 MtrunA17_Chr4g0057141 21.019 314 235 8 243 548 336 644 6.02e-13 71.6
Msa0787150 MtrunA17_Chr1g0185891 21.019 314 235 8 243 548 275 583 6.89e-13 71.2
Msa0787150 MtrunA17_Chr3g0103361 24.739 287 201 9 263 543 18 295 7.80e-13 69.7
Msa0787150 MtrunA17_Chr8g0352821 22.222 297 178 10 259 551 220 467 1.13e-12 70.9
Msa0787150 MtrunA17_Chr7g0266251 23.659 317 179 8 261 552 66 344 1.67e-12 68.9
Msa0787150 MtrunA17_Chr6g0448921 25.000 160 116 3 250 408 87 243 3.76e-12 69.3
Msa0787150 MtrunA17_Chr3g0099061 22.642 371 244 16 208 548 154 511 5.98e-12 68.2
Msa0787150 MtrunA17_Chr1g0172501 28.655 171 115 5 263 430 397 563 3.50e-11 65.9
Msa0787150 MtrunA17_Chr3g0116561 21.678 286 173 9 267 548 270 508 5.28e-11 65.1
Msa0787150 MtrunA17_Chr2g0284241 19.728 294 202 8 255 527 41 321 6.85e-11 63.9
Msa0787150 MtrunA17_Chr3g0093681 28.655 171 115 5 263 430 397 563 7.02e-11 65.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0787150 AT5G08560.1 59.831 590 215 8 1 570 1 588 0.0 716
Msa0787150 AT5G08560.2 59.831 590 215 8 1 570 1 588 0.0 716
Msa0787150 AT5G08560.3 59.831 590 215 8 1 570 1 588 0.0 716
Msa0787150 AT5G43920.1 48.738 515 251 6 53 555 7 520 8.13e-165 479
Msa0787150 AT4G02730.1 32.343 303 193 10 253 548 32 329 2.38e-34 133
Msa0787150 AT3G49660.1 27.303 304 213 5 251 548 11 312 4.57e-30 120
Msa0787150 AT3G49660.1 31.159 138 91 2 250 384 141 277 7.30e-14 73.2
Msa0787150 AT2G43770.1 23.746 299 216 8 257 547 46 340 7.42e-23 100
Msa0787150 AT5G64730.1 24.579 297 219 5 252 548 6 297 1.29e-22 99.0
Msa0787150 AT5G56130.1 25.786 318 210 12 252 552 6 314 1.41e-17 84.3
Msa0787150 AT5G25150.1 35.593 118 72 2 263 379 459 573 7.50e-17 84.7
Msa0787150 AT5G25150.2 35.593 118 72 2 263 379 459 573 7.66e-17 84.7
Msa0787150 AT5G67320.1 24.169 331 206 11 252 550 253 570 6.86e-15 78.2
Msa0787150 AT1G71840.1 22.045 313 198 7 256 565 62 331 5.64e-14 74.7
Msa0787150 AT3G27640.1 24.221 289 172 9 306 550 126 411 4.60e-13 72.4
Msa0787150 AT1G10580.1 21.865 311 230 8 246 548 267 572 5.12e-13 72.4
Msa0787150 AT3G27640.2 24.221 289 172 9 306 550 107 392 5.59e-13 72.0
Msa0787150 AT5G13480.2 21.886 297 179 10 259 551 171 418 9.03e-13 71.6
Msa0787150 AT5G13480.4 21.886 297 179 10 259 551 148 395 1.13e-12 71.2
Msa0787150 AT5G13480.1 21.886 297 179 10 259 551 160 407 1.14e-12 71.2
Msa0787150 AT5G13480.3 21.886 297 179 10 259 551 148 395 1.15e-12 71.2
Msa0787150 AT5G52820.1 23.121 346 208 11 250 548 137 471 1.37e-12 70.5
Msa0787150 AT5G52820.1 26.056 142 104 1 279 420 332 472 5.42e-11 65.5
Msa0787150 AT2G41500.1 22.143 280 166 7 272 548 263 493 3.76e-12 69.3
Msa0787150 AT2G41500.1 28.959 221 135 8 232 435 335 550 7.42e-12 68.6
Msa0787150 AT2G41500.2 22.143 280 166 7 272 548 263 493 3.76e-12 69.3
Msa0787150 AT2G41500.2 28.959 221 135 8 232 435 335 550 7.42e-12 68.6
Msa0787150 AT5G16750.1 30.189 159 101 6 400 554 27 179 4.34e-12 69.7
Msa0787150 AT1G73720.1 20.152 526 361 21 61 548 5 509 2.33e-11 66.6
Msa0787150 AT3G18140.1 19.655 290 200 8 255 527 29 302 3.60e-11 65.1
Msa0787150 AT2G32700.7 22.615 283 199 11 272 548 537 805 3.85e-11 66.6
Msa0787150 AT2G32700.2 22.615 283 199 11 272 548 518 786 4.76e-11 66.2
Msa0787150 AT2G32700.5 22.615 283 199 11 272 548 518 786 4.76e-11 66.2
Msa0787150 AT2G32700.1 22.615 283 199 11 272 548 518 786 4.76e-11 66.2
Msa0787150 AT2G32700.4 22.615 283 199 11 272 548 518 786 4.76e-11 66.2
Msa0787150 AT2G32700.3 22.615 283 199 11 272 548 518 786 4.76e-11 66.2
Msa0787150 AT2G32700.6 22.615 283 199 11 272 548 516 784 4.84e-11 66.2

Find 180 sgRNAs with CRISPR-Local

Find 305 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TATTCCAAAGATTAATTTCT+TGG 0.164363 5_2:+72808860 None:intergenic
CTGTTAAGATTATTAATATA+TGG 0.167131 5_2:-72811583 Msa0787150:five_prime_UTR
TTGAACAGCAATACTGTATT+AGG 0.205048 5_2:+72808982 None:intergenic
ATCGCTTAAGATTTCTGATT+TGG 0.214294 5_2:-72809046 Msa0787150:CDS
AACCCATTTCTTCTGTTTCA+TGG 0.245339 5_2:-72809293 Msa0787150:CDS
AAACAGAAGAAATGGGTTTC+TGG 0.247488 5_2:+72809298 None:intergenic
AAATTCTTTGAACTTCTAAA+TGG 0.270354 5_2:-72811126 Msa0787150:CDS
AGTGGGAAACATATACTTTC+TGG 0.294428 5_2:-72809138 Msa0787150:CDS
AACAAGTACTTGATGGGAAT+TGG 0.300522 5_2:-72811233 Msa0787150:CDS
ATGACCGGACAATTCGGATA+TGG 0.311225 5_2:-72808245 Msa0787150:CDS
TCATTGGAGTAATAAGAATA+AGG 0.312398 5_2:-72812368 Msa0787150:five_prime_UTR
TGAACCAAGAAATTAATCTT+TGG 0.323203 5_2:-72808864 Msa0787150:CDS
GGCGCTCGAGGTTTATTATA+AGG 0.334980 5_2:-72808795 Msa0787150:CDS
GCAGGGATAGTAGTAGAATT+CGG 0.341628 5_2:-72811050 Msa0787150:CDS
CTTTATCTATATCATTTCAT+TGG 0.341908 5_2:-72812384 Msa0787150:five_prime_UTR
AGGAGATTACTCCACTTTGC+AGG 0.342931 5_2:-72811068 Msa0787150:CDS
GAGGCACTGCCTGGTCATTC+AGG 0.344214 5_2:-72808327 Msa0787150:CDS
CAATTGCAATGATAATAAAA+AGG 0.346452 5_2:+72808121 None:intergenic
GTCGGCCGCGTGTTTGATAT+TGG 0.346912 5_2:-72811154 Msa0787150:CDS
ATGATCAAACTGCAATCATC+TGG 0.349518 5_2:-72809632 Msa0787150:CDS
GATTTCTGATTTGGATATAA+CGG 0.356904 5_2:-72809037 Msa0787150:CDS
TTTCTTGATTATTATTCTAC+TGG 0.356996 5_2:+72812481 None:intergenic
ACTCCATGAAACAGAAGAAA+TGG 0.360475 5_2:+72809290 None:intergenic
TAAAGAGAGACGAGTTTGTT+AGG 0.364649 5_2:-72811362 Msa0787150:CDS
TGAAAAGAGGTTGGAACATC+TGG 0.366917 5_2:-72810911 Msa0787150:CDS
GAGTAATAAGAATAAGGTTT+GGG 0.369765 5_2:-72812362 Msa0787150:five_prime_UTR
CTGGCTTAGTCTCCTGTACA+TGG 0.370880 5_2:-72809167 Msa0787150:CDS
ATTTGCATGTGGGAATTAGA+TGG 0.371375 5_2:-72809099 Msa0787150:CDS
CTAACCTGTACTGTTCTAGA+TGG 0.373437 5_2:+72810787 None:intergenic
AAGCCTCTCGCTGCAAGGTA+AGG 0.374514 5_2:+72810878 None:intergenic
ATAATGTCTCAGGAATTAAA+AGG 0.377105 5_2:+72807992 None:intergenic
GTCTCTCTTTATAACCCCTT+TGG 0.381651 5_2:+72811374 None:intergenic
GTGAGGAGCTCTTCGTCATT+AGG 0.382343 5_2:+72809267 None:intergenic
CAGGGATAGTAGTAGAATTC+GGG 0.384222 5_2:-72811049 Msa0787150:CDS
TTAATGATAAGTGTATATAT+TGG 0.386133 5_2:-72807963 Msa0787150:three_prime_UTR
TTTGAAACGTATGAAGGTTT+CGG 0.391023 5_2:-72811514 Msa0787150:CDS
GCAGATATTGTGTTCCTTTG+AGG 0.393339 5_2:-72811660 Msa0787150:intron
CTTCTTTGTAGGTCTACATA+TGG 0.393962 5_2:-72808374 Msa0787150:intron
GGAGTAATAAGAATAAGGTT+TGG 0.402503 5_2:-72812363 Msa0787150:five_prime_UTR
TGTTAAGATTATTAATATAT+GGG 0.403593 5_2:-72811582 Msa0787150:five_prime_UTR
ATTATAAGGTCTTGCTTTGG+TGG 0.406114 5_2:-72808781 Msa0787150:CDS
GTGGAGTGGAGGAATCTATT+AGG 0.413571 5_2:-72809242 Msa0787150:CDS
GCGCGGCTAGAGGAGGAGTC+TGG 0.418206 5_2:-72811294 Msa0787150:CDS
ATAAATTTGGAGACACTTGC+CGG 0.419366 5_2:+72809203 None:intergenic
TTTATTATAAGGTCTTGCTT+TGG 0.419821 5_2:-72808784 Msa0787150:CDS
GCTAACATGTGGGGATTAGC+TGG 0.424867 5_2:+72808279 None:intergenic
TCTAAATGGAGGAAAGGTTA+TGG 0.427388 5_2:-72811112 Msa0787150:CDS
TTTACGCAACAAGTACTTGA+TGG 0.428247 5_2:-72811240 Msa0787150:CDS
GATTAGTTGGATTGTCGAAC+GGG 0.431277 5_2:-72811485 Msa0787150:CDS
TTGTACTTCCCAATGAGCTT+AGG 0.432048 5_2:+72808826 None:intergenic
CGTGTAAAGCATAGATTATC+TGG 0.433494 5_2:-72809324 Msa0787150:CDS
GTAGCTACATTGCGTAAGAT+TGG 0.437473 5_2:-72811201 Msa0787150:CDS
GTTTCGGCGAAAGGATTAGT+TGG 0.438274 5_2:-72811498 Msa0787150:CDS
ACCGTCCGAAGGGGACGATC+AGG 0.440225 5_2:-72811406 Msa0787150:CDS
ACCTTCATACGTTTCAAAGC+TGG 0.443185 5_2:+72811519 None:intergenic
TACATATGGCACCGAAGCTC+AGG 0.443665 5_2:-72808360 Msa0787150:CDS
TTGCCCATTTCACAACTCAT+TGG 0.447546 5_2:-72810857 Msa0787150:CDS
TGATCCAATGAGTTGTGAAA+TGG 0.449737 5_2:+72810853 None:intergenic
TGACCGGACAATTCGGATAT+GGG 0.450477 5_2:-72808244 Msa0787150:CDS
ATTAATCTTTGGAATATTGA+AGG 0.452243 5_2:-72808853 Msa0787150:CDS
ACCTTTACAATATCTTGCTT+AGG 0.458978 5_2:+72810997 None:intergenic
ACAAGTACTTGATGGGAATT+GGG 0.460130 5_2:-72811232 Msa0787150:CDS
GAAGGCGATCCTAAGCTCAT+TGG 0.460407 5_2:-72808835 Msa0787150:CDS
CGTATGAAGGTTTCGGCGAA+AGG 0.461320 5_2:-72811507 Msa0787150:CDS
ATGGGAAAGAAGTGGAGTCT+TGG 0.463584 5_2:-72809080 Msa0787150:CDS
AAGTTCCTCCATTGCAGTAA+TGG 0.463877 5_2:+72808172 None:intergenic
AAGAGAGAAATGATCGGAAT+CGG 0.466798 5_2:+72812203 None:intergenic
CTATCGGCTCTCCTGAGCTT+CGG 0.473900 5_2:+72808349 None:intergenic
AAGGCGATCCTAAGCTCATT+GGG 0.475240 5_2:-72808834 Msa0787150:CDS
CCAGTGATGACCGGACAATT+CGG 0.475820 5_2:-72808251 Msa0787150:CDS
GGAGGAATCTATTAGGCGTT+GGG 0.480100 5_2:-72809235 Msa0787150:CDS
ACCAGCTTTGAAACGTATGA+AGG 0.489309 5_2:-72811520 Msa0787150:CDS
TTGGGAAGTACAAAGGTCAT+AGG 0.494292 5_2:-72808816 Msa0787150:CDS
GGAATACCTTTGCACTCACC+TGG 0.496485 5_2:-72811273 Msa0787150:CDS
CCGAATTGTCCGGTCATCAC+TGG 0.497885 5_2:+72808251 None:intergenic
ACAATATCTTGCTTAGGAGA+TGG 0.500640 5_2:+72811003 None:intergenic
ATTTGGATATAACGGCTGAC+GGG 0.500965 5_2:-72809029 Msa0787150:CDS
TCAGGTATCATCACTGTTGG+AGG 0.502498 5_2:+72810931 None:intergenic
GCAAAGGCATTGTATTCGCT+TGG 0.504088 5_2:-72811333 Msa0787150:CDS
TCACTTGAGAAACTTCCAAC+AGG 0.504215 5_2:+72811447 None:intergenic
ATGATCGGAATCGGAGTTTG+AGG 0.506112 5_2:+72812212 None:intergenic
AGCCTCTCGCTGCAAGGTAA+GGG 0.507835 5_2:+72810879 None:intergenic
ATCAGGTTGTCGGTTCCAAA+GGG 0.509238 5_2:-72811389 Msa0787150:CDS
TTCCATGAGTCTAATTCACT+TGG 0.509732 5_2:+72807925 None:intergenic
TGGAGGAATCTATTAGGCGT+TGG 0.513191 5_2:-72809236 Msa0787150:CDS
GACAACCTGATCGTCCCCTT+CGG 0.518549 5_2:+72811401 None:intergenic
CTCCATGAAACAGAAGAAAT+GGG 0.519066 5_2:+72809291 None:intergenic
TTCTTTGAACTTCTAAATGG+AGG 0.519306 5_2:-72811123 Msa0787150:CDS
GATCCAATGAGTTGTGAAAT+GGG 0.522742 5_2:+72810854 None:intergenic
GATCAGGTTGTCGGTTCCAA+AGG 0.527948 5_2:-72811390 Msa0787150:CDS
TTACGCAACAAGTACTTGAT+GGG 0.533338 5_2:-72811239 Msa0787150:CDS
AAGTTTCTCAAGTGACTCCA+TGG 0.534561 5_2:-72811439 Msa0787150:CDS
GAAAGTATATGTTTCCCACT+TGG 0.535435 5_2:+72809141 None:intergenic
TGAACTTCTAAATGGAGGAA+AGG 0.536273 5_2:-72811118 Msa0787150:CDS
GGAAGCATTGAAGACCTTGA+GGG 0.536828 5_2:-72811091 Msa0787150:CDS
GAAGGGGACGATCAGGTTGT+CGG 0.536973 5_2:-72811399 Msa0787150:CDS
AAGCTCAGGAGAGCCGATAG+AGG 0.539387 5_2:-72808346 Msa0787150:CDS
TGACAGATGACACTATTGTC+AGG 0.541344 5_2:-72811176 Msa0787150:CDS
TTTGCATGTGGGAATTAGAT+GGG 0.543867 5_2:-72809098 Msa0787150:CDS
CAGTGATGATACCTGAAAAG+AGG 0.546109 5_2:-72810924 Msa0787150:CDS
GATTATTAATATATGGGCTG+AGG 0.546954 5_2:-72811576 Msa0787150:five_prime_UTR
GTGATAAGAGCATTTGCATG+TGG 0.550089 5_2:-72809110 Msa0787150:CDS
CTCGGCTACTACCGTCCGAA+GGG 0.555270 5_2:-72811416 Msa0787150:CDS
GATTTGGATATAACGGCTGA+CGG 0.556339 5_2:-72809030 Msa0787150:CDS
GATGATACCTGAAAAGAGGT+TGG 0.556463 5_2:-72810920 Msa0787150:CDS
GGCCCCATATCCGAATTGTC+CGG 0.557382 5_2:+72808241 None:intergenic
GAGTGGGGCGCGGCTAGAGG+AGG 0.557951 5_2:-72811301 Msa0787150:CDS
AAAGAGTGGGGCGCGGCTAG+AGG 0.558493 5_2:-72811304 Msa0787150:CDS
GGACGGTAGTAGCCGAGCCA+TGG 0.559268 5_2:+72811422 None:intergenic
AGGCGTTGGGATGTCTCTAC+CGG 0.560618 5_2:-72809222 Msa0787150:CDS
CCTGTACATGGTTTCCAAGT+GGG 0.561775 5_2:-72809155 Msa0787150:CDS
AGCCCTTACCTTGCAGCGAG+AGG 0.562052 5_2:-72810881 Msa0787150:CDS
GGAGATTACTCCACTTTGCA+GGG 0.564765 5_2:-72811067 Msa0787150:CDS
GAGCAAGCTTTCATTGCAAG+TGG 0.565829 5_2:-72808754 Msa0787150:CDS
TCGCTTGGTTATAGAAAGAG+TGG 0.565963 5_2:-72811318 Msa0787150:CDS
AAACACATGATGATGAGGTA+TGG 0.568303 5_2:-72809701 Msa0787150:CDS
TAGCCTCTGCCAGTGATGAC+CGG 0.570210 5_2:-72808260 Msa0787150:CDS
GAGCCGATAGAGGCACTGCC+TGG 0.571510 5_2:-72808336 Msa0787150:CDS
CCCACTTGGAAACCATGTAC+AGG 0.572154 5_2:+72809155 None:intergenic
GCTCGGCTACTACCGTCCGA+AGG 0.572516 5_2:-72811417 Msa0787150:CDS
TGATCAAACTGCAATCATCT+GGG 0.573879 5_2:-72809631 Msa0787150:CDS
GGATTAGTTGGATTGTCGAA+CGG 0.574631 5_2:-72811486 Msa0787150:CDS
TCCTAAGCAAGATATTGTAA+AGG 0.577339 5_2:-72810998 Msa0787150:CDS
AACCAAGTGAATTAGACTCA+TGG 0.578587 5_2:-72807927 Msa0787150:three_prime_UTR
TTTCATTGCAAGTGGAAGTG+AGG 0.579004 5_2:-72808746 Msa0787150:CDS
GTTTGTTAGGATAATTGCAA+AGG 0.580074 5_2:-72811349 Msa0787150:CDS
AAGTGGAAGTGAGGATTCGC+AGG 0.580953 5_2:-72808737 Msa0787150:intron
ACTGGCAGAGGCTAACATGT+GGG 0.581947 5_2:+72808269 None:intergenic
GATACCATCTAGAACAGTAC+AGG 0.582230 5_2:-72810791 Msa0787150:intron
TGGAGTAATCTCCTCCCTCA+AGG 0.585707 5_2:+72811077 None:intergenic
TCTTCTTCTAAAGAGCCTGT+TGG 0.587005 5_2:-72811462 Msa0787150:CDS
ATAAAGAAACAAAGGATGAG+AGG 0.587569 5_2:-72808960 Msa0787150:CDS
TGTCCGGTCATCACTGGCAG+AGG 0.588463 5_2:+72808257 None:intergenic
TGGGCAAGCCTCTCGCTGCA+AGG 0.591752 5_2:+72810873 None:intergenic
GGCATCCATTACTGCAATGG+AGG 0.591892 5_2:-72808177 Msa0787150:CDS
GGAATTAGATGGGAAAGAAG+TGG 0.592587 5_2:-72809088 Msa0787150:CDS
CGCTTGGTTATAGAAAGAGT+GGG 0.593369 5_2:-72811317 Msa0787150:CDS
GCTGTTCAATAAAGAAACAA+AGG 0.597283 5_2:-72808968 Msa0787150:CDS
GACGAAGAGCTCCTCACATG+TGG 0.597893 5_2:-72809261 Msa0787150:CDS
AAAAGAAAGAGAGAAATGAT+CGG 0.598904 5_2:+72812197 None:intergenic
GCTCCTCACATGTGGAGTGG+AGG 0.600384 5_2:-72809253 Msa0787150:CDS
ATATTGTAAAGGTGAGATCT+CGG 0.600496 5_2:-72810987 Msa0787150:CDS
TGCCATTGCTGTGCGCATGT+TGG 0.601143 5_2:+72808196 None:intergenic
TTTAAAGGTTGGCGTAAATG+GGG 0.602976 5_2:-72809349 Msa0787150:intron
ACCTGATCGTCCCCTTCGGA+CGG 0.603999 5_2:+72811405 None:intergenic
AGGAGATGGAGACACTAAGC+AGG 0.606908 5_2:+72811017 None:intergenic
TCTCAAGTGACTCCATGGCT+CGG 0.607266 5_2:-72811434 Msa0787150:CDS
TTCAGATCATCATTGTGGAA+AGG 0.608588 5_2:-72810818 Msa0787150:CDS
CTTAGAAACACATGATGATG+AGG 0.609621 5_2:-72809706 Msa0787150:CDS
GAGCTGTTAATTGTGTGAGC+TGG 0.609857 5_2:-72808305 Msa0787150:CDS
TTATATTCAGATCATCATTG+TGG 0.610290 5_2:-72810823 Msa0787150:CDS
TGGAAGCATTGAAGACCTTG+AGG 0.611400 5_2:-72811092 Msa0787150:CDS
TGACCAGGCAGTGCCTCTAT+CGG 0.611974 5_2:+72808333 None:intergenic
AATGGCATCCATTACTGCAA+TGG 0.618205 5_2:-72808180 Msa0787150:CDS
TGATAAGAGCATTTGCATGT+GGG 0.619083 5_2:-72809109 Msa0787150:CDS
ATCTCGGTCAAAGCTTCTAG+AGG 0.620596 5_2:-72810971 Msa0787150:CDS
AAGCTCATTGGGAAGTACAA+AGG 0.624344 5_2:-72808823 Msa0787150:CDS
AGAGCTCCTCACATGTGGAG+TGG 0.631004 5_2:-72809256 Msa0787150:CDS
CACTGGCAGAGGCTAACATG+TGG 0.632424 5_2:+72808268 None:intergenic
CTGGCAGAGGCTAACATGTG+GGG 0.632842 5_2:+72808270 None:intergenic
TTTGGATATAACGGCTGACG+GGG 0.633962 5_2:-72809028 Msa0787150:CDS
ACAAAGGTCATAGGCGCTCG+AGG 0.635818 5_2:-72808807 Msa0787150:CDS
AAAGAAGTGGAGTCTTGGAA+AGG 0.636859 5_2:-72809075 Msa0787150:CDS
GACCGGACAATTCGGATATG+GGG 0.637196 5_2:-72808243 Msa0787150:CDS
TTGACACCAGGTGAGTGCAA+AGG 0.639008 5_2:+72811267 None:intergenic
TCCTGTACATGGTTTCCAAG+TGG 0.639029 5_2:-72809156 Msa0787150:CDS
TTAACAGCTCCTGAATGACC+AGG 0.643672 5_2:+72808318 None:intergenic
AGATGACACTATTGTCAGGT+CGG 0.645072 5_2:-72811172 Msa0787150:CDS
CTACTACTATCCCTGCAAAG+TGG 0.645119 5_2:+72811057 None:intergenic
TACCAACATGCGCACAGCAA+TGG 0.645886 5_2:-72808198 Msa0787150:CDS
ATTCCTCCACTCCACATGTG+AGG 0.658511 5_2:+72809250 None:intergenic
AGCATTGAAGACCTTGAGGG+AGG 0.665437 5_2:-72811088 Msa0787150:CDS
TGCGTAAACAGATTGACACC+AGG 0.666046 5_2:+72811255 None:intergenic
TAACTGAACAGAGAAGAAGA+AGG 0.667440 5_2:-72812297 Msa0787150:five_prime_UTR
CTGTTCCAATATCAAACACG+CGG 0.669040 5_2:+72811149 None:intergenic
GTTATAGAAAGAGTGGGGCG+CGG 0.677569 5_2:-72811311 Msa0787150:CDS
TCGGCTACTACCGTCCGAAG+GGG 0.678925 5_2:-72811415 Msa0787150:CDS
TCAGGTTGTCGGTTCCAAAG+GGG 0.696509 5_2:-72811388 Msa0787150:CDS
GCTTGGTTATAGAAAGAGTG+GGG 0.698893 5_2:-72811316 Msa0787150:CDS
TCAAACTGCAATCATCTGGG+AGG 0.712903 5_2:-72809628 Msa0787150:intron

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TGTTAAGATTATTAATATAT+GGG - chr5_2:72808842-72808861 Msa0787150:CDS 10.0%
!!! TTTATAGAATTTTTACTATA+AGG + chr5_2:72810405-72810424 None:intergenic 10.0%
!! AGATTAAAAATAATATAGAT+AGG + chr5_2:72810511-72810530 None:intergenic 10.0%
!! AAAGATTAAGATATATGAAT+CGG + chr5_2:72808322-72808341 None:intergenic 15.0%
!! CTGTTAAGATTATTAATATA+TGG - chr5_2:72808841-72808860 Msa0787150:CDS 15.0%
!!! AAAGGATAATAAATTTTTGT+TGG - chr5_2:72811528-72811547 Msa0787150:CDS 15.0%
!!! TTTGCAAAATAAAATTCTTT+TGG - chr5_2:72811770-72811789 Msa0787150:intron 15.0%
!! TTATAACTTTATGTCTTATA+AGG - chr5_2:72811804-72811823 Msa0787150:intron 15.0%
!! TATAACTTTATGTCTTATAA+GGG - chr5_2:72811805-72811824 Msa0787150:intron 15.0%
!! ATTAGATATAAAATGTAGTT+TGG - chr5_2:72811886-72811905 Msa0787150:intron 15.0%
!! TTAATGATAAGTGTATATAT+TGG - chr5_2:72812461-72812480 Msa0787150:five_prime_UTR 15.0%
!! TTTCTTGATTATTATTCTAC+TGG + chr5_2:72807946-72807965 None:intergenic 20.0%
!! CTTTATCTATATCATTTCAT+TGG - chr5_2:72808040-72808059 Msa0787150:three_prime_UTR 20.0%
!!! ATGATTATCTTGATTTTAGA+TGG - chr5_2:72808441-72808460 Msa0787150:intron 20.0%
!!! TTATTTGTTGTTTAAGTTTG+AGG - chr5_2:72808557-72808576 Msa0787150:intron 20.0%
!! AAATTCTTTGAACTTCTAAA+TGG - chr5_2:72809298-72809317 Msa0787150:CDS 20.0%
!!! TATCCAATTATGATAGATTT+TGG - chr5_2:72810053-72810072 Msa0787150:intron 20.0%
!! TTTCCAAAATCTATCATAAT+TGG + chr5_2:72810059-72810078 None:intergenic 20.0%
!!! TTTGTACAATTTTCACATAA+TGG - chr5_2:72810746-72810765 Msa0787150:intron 20.0%
!!! TTGTACAATTTTCACATAAT+GGG - chr5_2:72810747-72810766 Msa0787150:intron 20.0%
!!! GGGTTTTAGATTTTAATTTT+TGG - chr5_2:72811045-72811064 Msa0787150:CDS 20.0%
!!! ATTTTTGGTCTTCTTTTTAA+AGG - chr5_2:72811060-72811079 Msa0787150:CDS 20.0%
!! AAGAAAAAGAAGTTATTGTT+TGG + chr5_2:72811504-72811523 None:intergenic 20.0%
!! TATTCCAAAGATTAATTTCT+TGG + chr5_2:72811567-72811586 None:intergenic 20.0%
!!! ATTAATCTTTGGAATATTGA+AGG - chr5_2:72811571-72811590 Msa0787150:five_prime_UTR 20.0%
!!! AGTAAATATGGATTTTCTAA+AGG + chr5_2:72811831-72811850 None:intergenic 20.0%
!!! TACATTTTATATCTAATCTC+AGG + chr5_2:72811883-72811902 None:intergenic 20.0%
!!! ACTTTTTATTCAGACTATTA+AGG + chr5_2:72812207-72812226 None:intergenic 20.0%
!! CAATTGCAATGATAATAAAA+AGG + chr5_2:72812306-72812325 None:intergenic 20.0%
!! TTAAAAACTAATAATGTCTC+AGG + chr5_2:72812445-72812464 None:intergenic 20.0%
! TCATTGGAGTAATAAGAATA+AGG - chr5_2:72808056-72808075 Msa0787150:three_prime_UTR 25.0%
! GAGTAATAAGAATAAGGTTT+GGG - chr5_2:72808062-72808081 Msa0787150:three_prime_UTR 25.0%
! AAAAGAAAGAGAGAAATGAT+CGG + chr5_2:72808230-72808249 None:intergenic 25.0%
! CTGTTATATATCATGTAATC+TGG - chr5_2:72808467-72808486 Msa0787150:intron 25.0%
! TGATACTCATTCATTCTATT+TGG + chr5_2:72808655-72808674 None:intergenic 25.0%
!!! GATGTTTTCGCTTTTATTTA+AGG - chr5_2:72808688-72808707 Msa0787150:intron 25.0%
! TTATATTCAGATCATCATTG+TGG - chr5_2:72809601-72809620 Msa0787150:intron 25.0%
! GAAATTGCGATATTTATTGA+TGG - chr5_2:72809748-72809767 Msa0787150:intron 25.0%
! AAAATTATGTTGTGATGTAC+TGG - chr5_2:72809879-72809898 Msa0787150:intron 25.0%
! ATTATGTGGATACTAAATTG+TGG - chr5_2:72809902-72809921 Msa0787150:intron 25.0%
! ATCTGAGTTCACTAAATTAA+TGG - chr5_2:72810107-72810126 Msa0787150:intron 25.0%
! AACTAGACAAAATCTTCTAT+TGG - chr5_2:72810136-72810155 Msa0787150:intron 25.0%
! TACTTCACAAATTGAGATTT+GGG + chr5_2:72810251-72810270 None:intergenic 25.0%
! TTACTTCACAAATTGAGATT+TGG + chr5_2:72810252-72810271 None:intergenic 25.0%
!!! GTCACATTTTTTTAATACCA+GGG - chr5_2:72810290-72810309 Msa0787150:intron 25.0%
!!! TCTGTTTTCATGTTTTTTTC+TGG - chr5_2:72810858-72810877 Msa0787150:CDS 25.0%
! TTACAACTAGGATTTCAAAT+TGG + chr5_2:72810911-72810930 None:intergenic 25.0%
! GAAGGAAAAAAATTACAACT+AGG + chr5_2:72810923-72810942 None:intergenic 25.0%
!!! GATTTCTGATTTGGATATAA+CGG - chr5_2:72811387-72811406 Msa0787150:CDS 25.0%
!! AACTTCTTTTTCTTTGTCAA+AGG - chr5_2:72811510-72811529 Msa0787150:CDS 25.0%
! TGAACCAAGAAATTAATCTT+TGG - chr5_2:72811560-72811579 Msa0787150:exon 25.0%
! TTTATTATAAGGTCTTGCTT+TGG - chr5_2:72811640-72811659 Msa0787150:five_prime_UTR 25.0%
! TACAAGATATTATCCTTCAA+AGG + chr5_2:72811749-72811768 None:intergenic 25.0%
!! ATCCATATTTACTTGTTTCT+AGG - chr5_2:72811838-72811857 Msa0787150:intron 25.0%
! ATAATGTCTCAGGAATTAAA+AGG + chr5_2:72812435-72812454 None:intergenic 25.0%
GGAGTAATAAGAATAAGGTT+TGG - chr5_2:72808061-72808080 Msa0787150:three_prime_UTR 30.0%
! TCTCTCTTTCTTTTGTAAGT+CGG - chr5_2:72808236-72808255 Msa0787150:CDS 30.0%
GCAATCATTCTCAAACTTAT+TGG - chr5_2:72808279-72808298 Msa0787150:CDS 30.0%
! GATTATTAATATATGGGCTG+AGG - chr5_2:72808848-72808867 Msa0787150:CDS 30.0%
! TTTGAAACGTATGAAGGTTT+CGG - chr5_2:72808910-72808929 Msa0787150:CDS 30.0%
! GTTTGTTAGGATAATTGCAA+AGG - chr5_2:72809075-72809094 Msa0787150:CDS 30.0%
TTCTTTGAACTTCTAAATGG+AGG - chr5_2:72809301-72809320 Msa0787150:CDS 30.0%
TCCTAAGCAAGATATTGTAA+AGG - chr5_2:72809426-72809445 Msa0787150:intron 30.0%
ACCTTTACAATATCTTGCTT+AGG + chr5_2:72809430-72809449 None:intergenic 30.0%
ATATTGTAAAGGTGAGATCT+CGG - chr5_2:72809437-72809456 Msa0787150:intron 30.0%
AATGGATGTGATTATTGTTG+AGG - chr5_2:72809934-72809953 Msa0787150:intron 30.0%
AACCAGAAAAATCTAAATCC+CGG + chr5_2:72809961-72809980 None:intergenic 30.0%
ATCACCAACAAGTAGTTAAT+CGG + chr5_2:72810034-72810053 None:intergenic 30.0%
! GTAACTTTTCTGTCAAAATG+TGG - chr5_2:72810268-72810287 Msa0787150:intron 30.0%
!!! GGTCACATTTTTTTAATACC+AGG - chr5_2:72810289-72810308 Msa0787150:intron 30.0%
GAAAGAAAAATATCAAACCC+TGG + chr5_2:72810310-72810329 None:intergenic 30.0%
!! GTAACAAGTAGAGTATTGTT+GGG + chr5_2:72810341-72810360 None:intergenic 30.0%
!! AGTAACAAGTAGAGTATTGT+TGG + chr5_2:72810342-72810361 None:intergenic 30.0%
GGTTATTGAGTTCTTATTGA+AGG + chr5_2:72810384-72810403 None:intergenic 30.0%
GCATACATACTCATGTAAAT+GGG + chr5_2:72810452-72810471 None:intergenic 30.0%
GACTTCAATTTGATGAATGA+GGG + chr5_2:72810474-72810493 None:intergenic 30.0%
! TATAGAAAGTAATGGAAGGA+AGG + chr5_2:72810637-72810656 None:intergenic 30.0%
! GCTATATAGAAAGTAATGGA+AGG + chr5_2:72810641-72810660 None:intergenic 30.0%
TCGAGCTATATAGAAAGTAA+TGG + chr5_2:72810645-72810664 None:intergenic 30.0%
!! TTGGTCTTCTTTTTAAAGGT+TGG - chr5_2:72811064-72811083 Msa0787150:CDS 30.0%
!! TTTTTAAAGGTTGGCGTAAA+TGG - chr5_2:72811073-72811092 Msa0787150:CDS 30.0%
!! TTTTAAAGGTTGGCGTAAAT+GGG - chr5_2:72811074-72811093 Msa0787150:CDS 30.0%
CTCCAAATTTATGAAAAAGC+TGG - chr5_2:72811232-72811251 Msa0787150:CDS 30.0%
!!! CACCAGCTTTTTCATAAATT+TGG + chr5_2:72811237-72811256 None:intergenic 30.0%
ATCGCTTAAGATTTCTGATT+TGG - chr5_2:72811378-72811397 Msa0787150:CDS 30.0%
TTGAACAGCAATACTGTATT+AGG + chr5_2:72811445-72811464 None:intergenic 30.0%
GCTGTTCAATAAAGAAACAA+AGG - chr5_2:72811456-72811475 Msa0787150:CDS 30.0%
ATAAAGAAACAAAGGATGAG+AGG - chr5_2:72811464-72811483 Msa0787150:CDS 30.0%
GAATGAACATAATCCTTTGA+AGG - chr5_2:72811733-72811752 Msa0787150:intron 30.0%
CACCTAGAAACAAGTAAATA+TGG + chr5_2:72811843-72811862 None:intergenic 30.0%
CTACTATAATCAGAGATGTT+AGG + chr5_2:72811979-72811998 None:intergenic 30.0%
TGATTTCATTCCTTCTTTGT+AGG - chr5_2:72812039-72812058 Msa0787150:intron 30.0%
!! TCTACTTTTGATGACAGTAA+TGG + chr5_2:72812337-72812356 None:intergenic 30.0%
TAACTGAACAGAGAAGAAGA+AGG - chr5_2:72808127-72808146 Msa0787150:three_prime_UTR 35.0%
GAAGAAGAAGAAGAAGAAGA+AGG - chr5_2:72808153-72808172 Msa0787150:exon 35.0%
AAGAGAGAAATGATCGGAAT+CGG + chr5_2:72808224-72808243 None:intergenic 35.0%
! CCTCTGAAAAAAAACCTCAA+AGG + chr5_2:72808781-72808800 None:intergenic 35.0%
!!! CCTTTGAGGTTTTTTTTCAG+AGG - chr5_2:72808778-72808797 Msa0787150:CDS 35.0%
! TAAAGAGAGACGAGTTTGTT+AGG - chr5_2:72809062-72809081 Msa0787150:CDS 35.0%
TTTACGCAACAAGTACTTGA+TGG - chr5_2:72809184-72809203 Msa0787150:CDS 35.0%
TTACGCAACAAGTACTTGAT+GGG - chr5_2:72809185-72809204 Msa0787150:CDS 35.0%
AACAAGTACTTGATGGGAAT+TGG - chr5_2:72809191-72809210 Msa0787150:CDS 35.0%
ACAAGTACTTGATGGGAATT+GGG - chr5_2:72809192-72809211 Msa0787150:CDS 35.0%
TGAACTTCTAAATGGAGGAA+AGG - chr5_2:72809306-72809325 Msa0787150:CDS 35.0%
TCTAAATGGAGGAAAGGTTA+TGG - chr5_2:72809312-72809331 Msa0787150:CDS 35.0%
ACAATATCTTGCTTAGGAGA+TGG + chr5_2:72809424-72809443 None:intergenic 35.0%
!!! TTTTCAGGTATCATCACTGT+TGG + chr5_2:72809499-72809518 None:intergenic 35.0%
GATCCAATGAGTTGTGAAAT+GGG + chr5_2:72809573-72809592 None:intergenic 35.0%
TGATCCAATGAGTTGTGAAA+TGG + chr5_2:72809574-72809593 None:intergenic 35.0%
TTCAGATCATCATTGTGGAA+AGG - chr5_2:72809606-72809625 Msa0787150:intron 35.0%
GTATACAATAGTCTCAGCAA+AGG + chr5_2:72809816-72809835 None:intergenic 35.0%
TTGTGATGTACTGGATTATG+TGG - chr5_2:72809888-72809907 Msa0787150:intron 35.0%
AAATTGTGGCATCTTGCAAA+TGG - chr5_2:72809916-72809935 Msa0787150:intron 35.0%
ATGTGATTATTGTTGAGGTC+CGG - chr5_2:72809939-72809958 Msa0787150:intron 35.0%
TCACCAACAAGTAGTTAATC+GGG + chr5_2:72810033-72810052 None:intergenic 35.0%
! TGATATTTTTCTTTCGCCCT+TGG - chr5_2:72810315-72810334 Msa0787150:intron 35.0%
ATACTCATGTAAATGGGCAT+GGG + chr5_2:72810446-72810465 None:intergenic 35.0%
GGCATACATACTCATGTAAA+TGG + chr5_2:72810453-72810472 None:intergenic 35.0%
GGACTTCAATTTGATGAATG+AGG + chr5_2:72810475-72810494 None:intergenic 35.0%
TAGATAGGAGATATGACTCA+TGG + chr5_2:72810496-72810515 None:intergenic 35.0%
CGCTGTACTAAATAGCAAAA+GGG + chr5_2:72810613-72810632 None:intergenic 35.0%
TCGCTGTACTAAATAGCAAA+AGG + chr5_2:72810614-72810633 None:intergenic 35.0%
! CTTAGAAACACATGATGATG+AGG - chr5_2:72810718-72810737 Msa0787150:intron 35.0%
! AAACACATGATGATGAGGTA+TGG - chr5_2:72810723-72810742 Msa0787150:intron 35.0%
ATGATCAAACTGCAATCATC+TGG - chr5_2:72810792-72810811 Msa0787150:CDS 35.0%
TGATCAAACTGCAATCATCT+GGG - chr5_2:72810793-72810812 Msa0787150:CDS 35.0%
!! TTTTGTGCATTGATGAGTGA+GGG + chr5_2:72810962-72810981 None:intergenic 35.0%
!! TTTTTGTGCATTGATGAGTG+AGG + chr5_2:72810963-72810982 None:intergenic 35.0%
! GTGCACTCACATTTAGAATA+TGG - chr5_2:72811005-72811024 Msa0787150:CDS 35.0%
TTTAAAGGTTGGCGTAAATG+GGG - chr5_2:72811075-72811094 Msa0787150:CDS 35.0%
CGTGTAAAGCATAGATTATC+TGG - chr5_2:72811100-72811119 Msa0787150:CDS 35.0%
! AAACAGAAGAAATGGGTTTC+TGG + chr5_2:72811129-72811148 None:intergenic 35.0%
AACCCATTTCTTCTGTTTCA+TGG - chr5_2:72811131-72811150 Msa0787150:CDS 35.0%
CTCCATGAAACAGAAGAAAT+GGG + chr5_2:72811136-72811155 None:intergenic 35.0%
ACTCCATGAAACAGAAGAAA+TGG + chr5_2:72811137-72811156 None:intergenic 35.0%
ATAAATTTGGAGACACTTGC+CGG + chr5_2:72811224-72811243 None:intergenic 35.0%
ATTTATGAAAAAGCTGGTGC+TGG - chr5_2:72811238-72811257 Msa0787150:CDS 35.0%
! GAAAGTATATGTTTCCCACT+TGG + chr5_2:72811286-72811305 None:intergenic 35.0%
AGTGGGAAACATATACTTTC+TGG - chr5_2:72811286-72811305 Msa0787150:CDS 35.0%
!! TGATAAGAGCATTTGCATGT+GGG - chr5_2:72811315-72811334 Msa0787150:CDS 35.0%
ATTTGCATGTGGGAATTAGA+TGG - chr5_2:72811325-72811344 Msa0787150:CDS 35.0%
TTTGCATGTGGGAATTAGAT+GGG - chr5_2:72811326-72811345 Msa0787150:CDS 35.0%
ATTATAAGGTCTTGCTTTGG+TGG - chr5_2:72811643-72811662 Msa0787150:five_prime_UTR 35.0%
GCTGTGAATCTTCTTTCATT+TGG - chr5_2:72811927-72811946 Msa0787150:intron 35.0%
TAGTCTCCATTGCTTAAATG+TGG - chr5_2:72811996-72812015 Msa0787150:intron 35.0%
CATTGTCCACATTTAAGCAA+TGG + chr5_2:72812005-72812024 None:intergenic 35.0%
CATATGTAGACCTACAAAGA+AGG + chr5_2:72812052-72812071 None:intergenic 35.0%
CTTCTTTGTAGGTCTACATA+TGG - chr5_2:72812050-72812069 Msa0787150:intron 35.0%
AACCAAGTGAATTAGACTCA+TGG - chr5_2:72812497-72812516 Msa0787150:five_prime_UTR 35.0%
TTCCATGAGTCTAATTCACT+TGG + chr5_2:72812502-72812521 None:intergenic 35.0%
! CTCTTTCTTTTGTAAGTCGG+TGG - chr5_2:72808239-72808258 Msa0787150:CDS 40.0%
GCAGATATTGTGTTCCTTTG+AGG - chr5_2:72808764-72808783 Msa0787150:CDS 40.0%
!! ACCAGCTTTGAAACGTATGA+AGG - chr5_2:72808904-72808923 Msa0787150:CDS 40.0%
ACCTTCATACGTTTCAAAGC+TGG + chr5_2:72808908-72808927 None:intergenic 40.0%
!! GGATTAGTTGGATTGTCGAA+CGG - chr5_2:72808938-72808957 Msa0787150:CDS 40.0%
! GATTAGTTGGATTGTCGAAC+GGG - chr5_2:72808939-72808958 Msa0787150:CDS 40.0%
! TCTTCTTCTAAAGAGCCTGT+TGG - chr5_2:72808962-72808981 Msa0787150:CDS 40.0%
TCACTTGAGAAACTTCCAAC+AGG + chr5_2:72808980-72808999 None:intergenic 40.0%
AAGTTTCTCAAGTGACTCCA+TGG - chr5_2:72808985-72809004 Msa0787150:CDS 40.0%
GTCTCTCTTTATAACCCCTT+TGG + chr5_2:72809053-72809072 None:intergenic 40.0%
TCGCTTGGTTATAGAAAGAG+TGG - chr5_2:72809106-72809125 Msa0787150:CDS 40.0%
CGCTTGGTTATAGAAAGAGT+GGG - chr5_2:72809107-72809126 Msa0787150:CDS 40.0%
GCTTGGTTATAGAAAGAGTG+GGG - chr5_2:72809108-72809127 Msa0787150:CDS 40.0%
GTAGCTACATTGCGTAAGAT+TGG - chr5_2:72809223-72809242 Msa0787150:CDS 40.0%
TGACAGATGACACTATTGTC+AGG - chr5_2:72809248-72809267 Msa0787150:CDS 40.0%
AGATGACACTATTGTCAGGT+CGG - chr5_2:72809252-72809271 Msa0787150:CDS 40.0%
CTGTTCCAATATCAAACACG+CGG + chr5_2:72809278-72809297 None:intergenic 40.0%
GCAGGGATAGTAGTAGAATT+CGG - chr5_2:72809374-72809393 Msa0787150:intron 40.0%
CAGGGATAGTAGTAGAATTC+GGG - chr5_2:72809375-72809394 Msa0787150:intron 40.0%
CAGTGATGATACCTGAAAAG+AGG - chr5_2:72809500-72809519 Msa0787150:intron 40.0%
GATGATACCTGAAAAGAGGT+TGG - chr5_2:72809504-72809523 Msa0787150:intron 40.0%
! AGATGTTCCAACCTCTTTTC+AGG + chr5_2:72809514-72809533 None:intergenic 40.0%
TGAAAAGAGGTTGGAACATC+TGG - chr5_2:72809513-72809532 Msa0787150:intron 40.0%
TTGCCCATTTCACAACTCAT+TGG - chr5_2:72809567-72809586 Msa0787150:intron 40.0%
! GATACCATCTAGAACAGTAC+AGG - chr5_2:72809633-72809652 Msa0787150:CDS 40.0%
! CTAACCTGTACTGTTCTAGA+TGG + chr5_2:72809640-72809659 None:intergenic 40.0%
!! GCTGACTTGTTGATCAGTAA+CGG - chr5_2:72809770-72809789 Msa0787150:intron 40.0%
TGTGATTATTGTTGAGGTCC+GGG - chr5_2:72809940-72809959 Msa0787150:intron 40.0%
! GTCCGGGATTTAGATTTTTC+TGG - chr5_2:72809956-72809975 Msa0787150:intron 40.0%
CATTCCTTTGATGCAAAGAC+AGG + chr5_2:72809984-72810003 None:intergenic 40.0%
AACAAGTAGTTAATCGGGGT+TGG + chr5_2:72810028-72810047 None:intergenic 40.0%
AACCCCGATTAACTACTTGT+TGG - chr5_2:72810027-72810046 Msa0787150:intron 40.0%
CACCAACAAGTAGTTAATCG+GGG + chr5_2:72810032-72810051 None:intergenic 40.0%
CATACTCATGTAAATGGGCA+TGG + chr5_2:72810447-72810466 None:intergenic 40.0%
AAAAATCATCCCCAAAAGCC+AGG - chr5_2:72810541-72810560 Msa0787150:intron 40.0%
AAAATCATCCCCAAAAGCCA+GGG - chr5_2:72810542-72810561 Msa0787150:intron 40.0%
AGATCTGTCACAGTATTAGC+AGG + chr5_2:72810700-72810719 None:intergenic 40.0%
ATGGCTTAACTCTGCAACAT+TGG - chr5_2:72811024-72811043 Msa0787150:CDS 40.0%
TGGCTTAACTCTGCAACATT+GGG - chr5_2:72811025-72811044 Msa0787150:CDS 40.0%
!! GTGATAAGAGCATTTGCATG+TGG - chr5_2:72811314-72811333 Msa0787150:CDS 40.0%
GGAATTAGATGGGAAAGAAG+TGG - chr5_2:72811336-72811355 Msa0787150:CDS 40.0%
AAAGAAGTGGAGTCTTGGAA+AGG - chr5_2:72811349-72811368 Msa0787150:CDS 40.0%
GATTTGGATATAACGGCTGA+CGG - chr5_2:72811394-72811413 Msa0787150:CDS 40.0%
ATTTGGATATAACGGCTGAC+GGG - chr5_2:72811395-72811414 Msa0787150:CDS 40.0%
TTGTACTTCCCAATGAGCTT+AGG + chr5_2:72811601-72811620 None:intergenic 40.0%
! AAGCTCATTGGGAAGTACAA+AGG - chr5_2:72811601-72811620 Msa0787150:five_prime_UTR 40.0%
! TTGGGAAGTACAAAGGTCAT+AGG - chr5_2:72811608-72811627 Msa0787150:five_prime_UTR 40.0%
TTTCATTGCAAGTGGAAGTG+AGG - chr5_2:72811678-72811697 Msa0787150:intron 40.0%
! ATCAGAGATGTTAGGTACTG+CGG + chr5_2:72811971-72811990 None:intergenic 40.0%
AATGGCATCCATTACTGCAA+TGG - chr5_2:72812244-72812263 Msa0787150:five_prime_UTR 40.0%
AAGTTCCTCCATTGCAGTAA+TGG + chr5_2:72812255-72812274 None:intergenic 40.0%
ATGATCGGAATCGGAGTTTG+AGG + chr5_2:72808215-72808234 None:intergenic 45.0%
! GGCTGAGGTGAACTTTTCAT+GGG - chr5_2:72808863-72808882 Msa0787150:CDS 45.0%
! TGAGGTGAACTTTTCATGGG+AGG - chr5_2:72808866-72808885 Msa0787150:CDS 45.0%
! TGAACTTTTCATGGGAGGTG+TGG - chr5_2:72808871-72808890 Msa0787150:CDS 45.0%
! GTTTCGGCGAAAGGATTAGT+TGG - chr5_2:72808926-72808945 Msa0787150:CDS 45.0%
!! ATCAGGTTGTCGGTTCCAAA+GGG - chr5_2:72809035-72809054 Msa0787150:CDS 45.0%
!! GCAAAGGCATTGTATTCGCT+TGG - chr5_2:72809091-72809110 Msa0787150:CDS 45.0%
TGCGTAAACAGATTGACACC+AGG + chr5_2:72809172-72809191 None:intergenic 45.0%
!! TGGAAGCATTGAAGACCTTG+AGG - chr5_2:72809332-72809351 Msa0787150:CDS 45.0%
!! GGAAGCATTGAAGACCTTGA+GGG - chr5_2:72809333-72809352 Msa0787150:CDS 45.0%
AGGAGATTACTCCACTTTGC+AGG - chr5_2:72809356-72809375 Msa0787150:intron 45.0%
GGAGATTACTCCACTTTGCA+GGG - chr5_2:72809357-72809376 Msa0787150:intron 45.0%
CTACTACTATCCCTGCAAAG+TGG + chr5_2:72809370-72809389 None:intergenic 45.0%
ATCTCGGTCAAAGCTTCTAG+AGG - chr5_2:72809453-72809472 Msa0787150:intron 45.0%
TCAGGTATCATCACTGTTGG+AGG + chr5_2:72809496-72809515 None:intergenic 45.0%
AAAGGTTCCAGTCTACAAGG+CGG + chr5_2:72809798-72809817 None:intergenic 45.0%
AGCAAAGGTTCCAGTCTACA+AGG + chr5_2:72809801-72809820 None:intergenic 45.0%
GGTTCCTGTCTTTGCATCAA+AGG - chr5_2:72809977-72809996 Msa0787150:intron 45.0%
!! GTAGAGTATTGTTGGGCCAA+GGG + chr5_2:72810334-72810353 None:intergenic 45.0%
!! AGTAGAGTATTGTTGGGCCA+AGG + chr5_2:72810335-72810354 None:intergenic 45.0%
!! TTTTCTCCTCCCTGGCTTTT+GGG + chr5_2:72810554-72810573 None:intergenic 45.0%
!! ATTTTCTCCTCCCTGGCTTT+TGG + chr5_2:72810555-72810574 None:intergenic 45.0%
! TTTCTCGATTTTCTCCTCCC+TGG + chr5_2:72810562-72810581 None:intergenic 45.0%
GGGAGGAGAAAATCGAGAAA+AGG - chr5_2:72810562-72810581 Msa0787150:intron 45.0%
TCAAACTGCAATCATCTGGG+AGG - chr5_2:72810796-72810815 Msa0787150:CDS 45.0%
GGCATTTGGCTGTGATTTGA+AGG + chr5_2:72810941-72810960 None:intergenic 45.0%
!! CATTGATGAGTGAGGGCATT+TGG + chr5_2:72810955-72810974 None:intergenic 45.0%
GTGGAGTGGAGGAATCTATT+AGG - chr5_2:72811182-72811201 Msa0787150:CDS 45.0%
TGGAGGAATCTATTAGGCGT+TGG - chr5_2:72811188-72811207 Msa0787150:CDS 45.0%
GGAGGAATCTATTAGGCGTT+GGG - chr5_2:72811189-72811208 Msa0787150:CDS 45.0%
TCCTGTACATGGTTTCCAAG+TGG - chr5_2:72811268-72811287 Msa0787150:CDS 45.0%
CCTGTACATGGTTTCCAAGT+GGG - chr5_2:72811269-72811288 Msa0787150:CDS 45.0%
ATGGGAAAGAAGTGGAGTCT+TGG - chr5_2:72811344-72811363 Msa0787150:CDS 45.0%
TTTGGATATAACGGCTGACG+GGG - chr5_2:72811396-72811415 Msa0787150:CDS 45.0%
AAGGCGATCCTAAGCTCATT+GGG - chr5_2:72811590-72811609 Msa0787150:five_prime_UTR 45.0%
GGCGCTCGAGGTTTATTATA+AGG - chr5_2:72811629-72811648 Msa0787150:five_prime_UTR 45.0%
GAGCAAGCTTTCATTGCAAG+TGG - chr5_2:72811670-72811689 Msa0787150:intron 45.0%
! AGATGTTAGGTACTGCGGTA+TGG + chr5_2:72811966-72811985 None:intergenic 45.0%
TTAACAGCTCCTGAATGACC+AGG + chr5_2:72812109-72812128 None:intergenic 45.0%
GAGCTGTTAATTGTGTGAGC+TGG - chr5_2:72812119-72812138 Msa0787150:intron 45.0%
ATGACCGGACAATTCGGATA+TGG - chr5_2:72812179-72812198 Msa0787150:intron 45.0%
TGACCGGACAATTCGGATAT+GGG - chr5_2:72812180-72812199 Msa0787150:intron 45.0%
! GGGCTGAGGTGAACTTTTCA+TGG - chr5_2:72808862-72808881 Msa0787150:CDS 50.0%
CGTATGAAGGTTTCGGCGAA+AGG - chr5_2:72808917-72808936 Msa0787150:CDS 50.0%
TCTCAAGTGACTCCATGGCT+CGG - chr5_2:72808990-72809009 Msa0787150:CDS 50.0%
!! GATCAGGTTGTCGGTTCCAA+AGG - chr5_2:72809034-72809053 Msa0787150:CDS 50.0%
!! TCAGGTTGTCGGTTCCAAAG+GGG - chr5_2:72809036-72809055 Msa0787150:CDS 50.0%
GTTATAGAAAGAGTGGGGCG+CGG - chr5_2:72809113-72809132 Msa0787150:CDS 50.0%
GGAATACCTTTGCACTCACC+TGG - chr5_2:72809151-72809170 Msa0787150:CDS 50.0%
TTGACACCAGGTGAGTGCAA+AGG + chr5_2:72809160-72809179 None:intergenic 50.0%
! AGCATTGAAGACCTTGAGGG+AGG - chr5_2:72809336-72809355 Msa0787150:CDS 50.0%
TGGAGTAATCTCCTCCCTCA+AGG + chr5_2:72809350-72809369 None:intergenic 50.0%
AGGAGATGGAGACACTAAGC+AGG + chr5_2:72809410-72809429 None:intergenic 50.0%
GGCATGGGTTTGCATCGAAA+AGG + chr5_2:72810431-72810450 None:intergenic 50.0%
!! TTTCTCCTCCCTGGCTTTTG+GGG + chr5_2:72810553-72810572 None:intergenic 50.0%
GTGAGGAGCTCTTCGTCATT+AGG + chr5_2:72811160-72811179 None:intergenic 50.0%
ATTCCTCCACTCCACATGTG+AGG + chr5_2:72811177-72811196 None:intergenic 50.0%
CTGGCTTAGTCTCCTGTACA+TGG - chr5_2:72811257-72811276 Msa0787150:CDS 50.0%
CCCACTTGGAAACCATGTAC+AGG + chr5_2:72811272-72811291 None:intergenic 50.0%
GAAGGCGATCCTAAGCTCAT+TGG - chr5_2:72811589-72811608 Msa0787150:five_prime_UTR 50.0%
AAGTGGAAGTGAGGATTCGC+AGG - chr5_2:72811687-72811706 Msa0787150:intron 50.0%
GAAGTGAGGATTCGCAGGTA+TGG - chr5_2:72811692-72811711 Msa0787150:intron 50.0%
! TACATATGGCACCGAAGCTC+AGG - chr5_2:72812064-72812083 Msa0787150:intron 50.0%
! GCTAACATGTGGGGATTAGC+TGG + chr5_2:72812148-72812167 None:intergenic 50.0%
ACTGGCAGAGGCTAACATGT+GGG + chr5_2:72812158-72812177 None:intergenic 50.0%
CCAGTGATGACCGGACAATT+CGG - chr5_2:72812173-72812192 Msa0787150:intron 50.0%
GACCGGACAATTCGGATATG+GGG - chr5_2:72812181-72812200 Msa0787150:intron 50.0%
TACCAACATGCGCACAGCAA+TGG - chr5_2:72812226-72812245 Msa0787150:five_prime_UTR 50.0%
GGCATCCATTACTGCAATGG+AGG - chr5_2:72812247-72812266 Msa0787150:five_prime_UTR 50.0%
GACAACCTGATCGTCCCCTT+CGG + chr5_2:72809026-72809045 None:intergenic 55.0%
! GAAGGGGACGATCAGGTTGT+CGG - chr5_2:72809025-72809044 Msa0787150:CDS 55.0%
GTCGGCCGCGTGTTTGATAT+TGG - chr5_2:72809270-72809289 Msa0787150:CDS 55.0%
AGCCTCTCGCTGCAAGGTAA+GGG + chr5_2:72809548-72809567 None:intergenic 55.0%
AAGCCTCTCGCTGCAAGGTA+AGG + chr5_2:72809549-72809568 None:intergenic 55.0%
ATCATCCCCAAAAGCCAGGG+AGG - chr5_2:72810545-72810564 Msa0787150:intron 55.0%
GACGAAGAGCTCCTCACATG+TGG - chr5_2:72811163-72811182 Msa0787150:CDS 55.0%
AGAGCTCCTCACATGTGGAG+TGG - chr5_2:72811168-72811187 Msa0787150:CDS 55.0%
!! AGGCGTTGGGATGTCTCTAC+CGG - chr5_2:72811202-72811221 Msa0787150:CDS 55.0%
ACAAAGGTCATAGGCGCTCG+AGG - chr5_2:72811617-72811636 Msa0787150:five_prime_UTR 55.0%
!! CTATCGGCTCTCCTGAGCTT+CGG + chr5_2:72812078-72812097 None:intergenic 55.0%
AAGCTCAGGAGAGCCGATAG+AGG - chr5_2:72812078-72812097 Msa0787150:intron 55.0%
TGACCAGGCAGTGCCTCTAT+CGG + chr5_2:72812094-72812113 None:intergenic 55.0%
CTGGCAGAGGCTAACATGTG+GGG + chr5_2:72812157-72812176 None:intergenic 55.0%
CACTGGCAGAGGCTAACATG+TGG + chr5_2:72812159-72812178 None:intergenic 55.0%
TAGCCTCTGCCAGTGATGAC+CGG - chr5_2:72812164-72812183 Msa0787150:intron 55.0%
CCGAATTGTCCGGTCATCAC+TGG + chr5_2:72812176-72812195 None:intergenic 55.0%
GGCCCCATATCCGAATTGTC+CGG + chr5_2:72812186-72812205 None:intergenic 55.0%
TGCCATTGCTGTGCGCATGT+TGG + chr5_2:72812231-72812250 None:intergenic 55.0%
CTCGGCTACTACCGTCCGAA+GGG - chr5_2:72809008-72809027 Msa0787150:CDS 60.0%
TCGGCTACTACCGTCCGAAG+GGG - chr5_2:72809009-72809028 Msa0787150:CDS 60.0%
ACCTGATCGTCCCCTTCGGA+CGG + chr5_2:72809022-72809041 None:intergenic 60.0%
AGCCCTTACCTTGCAGCGAG+AGG - chr5_2:72809543-72809562 Msa0787150:intron 60.0%
AACGGCACCGCCTTGTAGAC+TGG - chr5_2:72809788-72809807 Msa0787150:intron 60.0%
GCTCCTCACATGTGGAGTGG+AGG - chr5_2:72811171-72811190 Msa0787150:CDS 60.0%
!! GAGGCACTGCCTGGTCATTC+AGG - chr5_2:72812097-72812116 Msa0787150:intron 60.0%
TGTCCGGTCATCACTGGCAG+AGG + chr5_2:72812170-72812189 None:intergenic 60.0%
GGACGGTAGTAGCCGAGCCA+TGG + chr5_2:72809005-72809024 None:intergenic 65.0%
GCTCGGCTACTACCGTCCGA+AGG - chr5_2:72809007-72809026 Msa0787150:CDS 65.0%
ACCGTCCGAAGGGGACGATC+AGG - chr5_2:72809018-72809037 Msa0787150:CDS 65.0%
AAAGAGTGGGGCGCGGCTAG+AGG - chr5_2:72809120-72809139 Msa0787150:CDS 65.0%
TGGGCAAGCCTCTCGCTGCA+AGG + chr5_2:72809554-72809573 None:intergenic 65.0%
!! GAGCCGATAGAGGCACTGCC+TGG - chr5_2:72812088-72812107 Msa0787150:intron 65.0%
GCGCGGCTAGAGGAGGAGTC+TGG - chr5_2:72809130-72809149 Msa0787150:CDS 70.0%
GAGTGGGGCGCGGCTAGAGG+AGG - chr5_2:72809123-72809142 Msa0787150:CDS 75.0%
Chromosome Type Strat End Strand Name
chr5_2 gene 72807915 72812531 72807915 ID=Msa0787150;Name=Msa0787150
chr5_2 mRNA 72807915 72812531 72807915 ID=Msa0787150-mRNA-1;Parent=Msa0787150;Name=Msa0787150-mRNA-1;_AED=0.01;_eAED=0.01;_QI=448|1|1|1|0.75|0.6|5|255|572
chr5_2 exon 72807915 72808385 72807915 ID=Msa0787150-mRNA-1:exon:22157;Parent=Msa0787150-mRNA-1
chr5_2 exon 72808738 72809364 72808738 ID=Msa0787150-mRNA-1:exon:22156;Parent=Msa0787150-mRNA-1
chr5_2 exon 72809629 72809730 72809629 ID=Msa0787150-mRNA-1:exon:22155;Parent=Msa0787150-mRNA-1
chr5_2 exon 72810792 72811678 72810792 ID=Msa0787150-mRNA-1:exon:22154;Parent=Msa0787150-mRNA-1
chr5_2 exon 72812197 72812531 72812197 ID=Msa0787150-mRNA-1:exon:22153;Parent=Msa0787150-mRNA-1
chr5_2 five_prime_UTR 72812197 72812531 72812197 ID=Msa0787150-mRNA-1:five_prime_utr;Parent=Msa0787150-mRNA-1
chr5_2 five_prime_UTR 72811566 72811678 72811566 ID=Msa0787150-mRNA-1:five_prime_utr;Parent=Msa0787150-mRNA-1
chr5_2 CDS 72810792 72811565 72810792 ID=Msa0787150-mRNA-1:cds;Parent=Msa0787150-mRNA-1
chr5_2 CDS 72809629 72809730 72809629 ID=Msa0787150-mRNA-1:cds;Parent=Msa0787150-mRNA-1
chr5_2 CDS 72808738 72809364 72808738 ID=Msa0787150-mRNA-1:cds;Parent=Msa0787150-mRNA-1
chr5_2 CDS 72808170 72808385 72808170 ID=Msa0787150-mRNA-1:cds;Parent=Msa0787150-mRNA-1
chr5_2 three_prime_UTR 72807915 72808169 72807915 ID=Msa0787150-mRNA-1:three_prime_utr;Parent=Msa0787150-mRNA-1
Gene Sequence

>Msa0787150

ATGGGAGGTGTGGACGATGAAGAACCAGCTTTGAAACGTATGAAGGTTTCGGCGAAAGGATTAGTTGGATTGTCGAACGGGTCTTCTTCTAAAGAGCCTGTTGGAAGTTTCTCAAGTGACTCCATGGCTCGGCTACTACCGTCCGAAGGGGACGATCAGGTTGTCGGTTCCAAAGGGGTTATAAAGAGAGACGAGTTTGTTAGGATAATTGCAAAGGCATTGTATTCGCTTGGTTATAGAAAGAGTGGGGCGCGGCTAGAGGAGGAGTCTGGAATACCTTTGCACTCACCTGGTGTCAATCTGTTTACGCAACAAGTACTTGATGGGAATTGGGATGAGAGTGTAGCTACATTGCGTAAGATTGGTTTGACAGATGACACTATTGTCAGGTCGGCCGCGTGTTTGATATTGGAACAGAAATTCTTTGAACTTCTAAATGGAGGAAAGGTTATGGAAGCATTGAAGACCTTGAGGGAGGAGATTACTCCACTTTGCAGGGATAGTAGTAGAATTCGGGAACTTTCGTCCTGCTTAGTGTCTCCATCTCCTAAGCAAGATATTGTAAAGGTGAGATCTCGGTCAAAGCTTCTAGAGGAATTGCAGAAACTGCTTCCTCCAACAGTGATGATACCTGAAAAGAGGTTGGAACATCTGGTTGAACAAGCCCTTACCTTGCAGCGAGAGGCTTGCCCATTTCACAACTCATTGGATCAGATGTCGTTATATTCAGATCATCATTGTGGAAAGGATCTGATACCATCTAGAACAGTACAGATCTTAGAAACACATGATGATGAGGTATGGTTTGTACAATTTTCACATAATGGGAAGTATTTAGCTTCAGCGTCAAATGATCAAACTGCAATCATCTGGGAGGTTGGCGTAAATGGGGTGCGTGTAAAGCATAGATTATCTGGTCACCAGAAACCCATTTCTTCTGTTTCATGGAGTCCTAATGACGAAGAGCTCCTCACATGTGGAGTGGAGGAATCTATTAGGCGTTGGGATGTCTCTACCGGCAAGTGTCTCCAAATTTATGAAAAAGCTGGTGCTGGCTTAGTCTCCTGTACATGGTTTCCAAGTGGGAAACATATACTTTCTGGCTTAAGTGATAAGAGCATTTGCATGTGGGAATTAGATGGGAAAGAAGTGGAGTCTTGGAAAGGACAAAAATCGCTTAAGATTTCTGATTTGGATATAACGGCTGACGGGGAAGAGATTATAAGTATCTGTAAACCTAATACAGTATTGCTGTTCAATAAAGAAACAAAGGATGAGAGGTTTATTGAAGAGCGCCAAACAATAACTTCTTTTTCTTTGTCAAAGGATAATAAATTTTTGTTGGTTAATCTTTTGAACCAAGAAATTAATCTTTGGAATATTGAAGGCGATCCTAAGCTCATTGGGAAGTACAAAGGTCATAGGCGCTCGAGGTTTATTATAAGGTCTTGCTTTGGTGGACTTGAGCAAGCTTTCATTGCAAGTGGAAGTGAGGATTCGCAGGTCTACATATGGCACCGAAGCTCAGGAGAGCCGATAGAGGCACTGCCTGGTCATTCAGGAGCTGTTAATTGTGTGAGCTGGAATCCAGCTAATCCCCACATGTTAGCCTCTGCCAGTGATGACCGGACAATTCGGATATGGGGCCTTAATAGTCTGAATAAAAAGTACCAACATGCGCACAGCAATGGCATCCATTACTGCAATGGAGGAACTTAG

Protein sequence

>Msa0787150

MGGVDDEEPALKRMKVSAKGLVGLSNGSSSKEPVGSFSSDSMARLLPSEGDDQVVGSKGVIKRDEFVRIIAKALYSLGYRKSGARLEEESGIPLHSPGVNLFTQQVLDGNWDESVATLRKIGLTDDTIVRSAACLILEQKFFELLNGGKVMEALKTLREEITPLCRDSSRIRELSSCLVSPSPKQDIVKVRSRSKLLEELQKLLPPTVMIPEKRLEHLVEQALTLQREACPFHNSLDQMSLYSDHHCGKDLIPSRTVQILETHDDEVWFVQFSHNGKYLASASNDQTAIIWEVGVNGVRVKHRLSGHQKPISSVSWSPNDEELLTCGVEESIRRWDVSTGKCLQIYEKAGAGLVSCTWFPSGKHILSGLSDKSICMWELDGKEVESWKGQKSLKISDLDITADGEEIISICKPNTVLLFNKETKDERFIEERQTITSFSLSKDNKFLLVNLLNQEINLWNIEGDPKLIGKYKGHRRSRFIIRSCFGGLEQAFIASGSEDSQVYIWHRSSGEPIEALPGHSGAVNCVSWNPANPHMLASASDDRTIRIWGLNSLNKKYQHAHSNGIHYCNGGT*