AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0398590

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0398590 MtrunA17_Chr3g0086641 98.378 370 5 1 1 369 1 370 0.0 743
Msa0398590 MtrunA17_Chr2g0285061 78.830 359 74 2 12 369 8 365 0.0 594
Msa0398590 MtrunA17_Chr8g0380041 74.444 360 88 4 12 369 6 363 0.0 555
Msa0398590 MtrunA17_Chr3g0077581 52.210 362 164 6 15 369 11 370 2.95e-127 370
Msa0398590 MtrunA17_Chr3g0077571 51.841 353 164 5 17 369 11 357 7.13e-127 369
Msa0398590 MtrunA17_Chr8g0380031 45.856 362 172 6 15 369 62 406 7.11e-112 332
Msa0398590 MtrunA17_Chr4g0017431 44.167 360 192 6 15 369 8 363 7.89e-111 328
Msa0398590 MtrunA17_Chr3g0131321 44.932 365 184 8 18 368 7 368 3.60e-108 322
Msa0398590 MtrunA17_Chr2g0284951 45.455 363 178 8 13 368 5 354 2.11e-105 314
Msa0398590 MtrunA17_Chr2g0284991 43.869 367 191 7 9 368 1 359 3.14e-104 311
Msa0398590 MtrunA17_Chr3g0085881 45.161 341 173 6 29 368 25 352 2.40e-103 308
Msa0398590 MtrunA17_Chr2g0284921 45.000 340 174 7 34 369 31 361 1.26e-100 302
Msa0398590 MtrunA17_Chr2g0285001 43.478 368 195 9 5 368 2 360 4.29e-97 293
Msa0398590 MtrunA17_Chr2g0284941 43.132 364 171 8 12 368 4 338 4.06e-96 290
Msa0398590 MtrunA17_Chr2g0294301 40.286 350 200 7 24 368 22 367 3.68e-84 260
Msa0398590 MtrunA17_Chr5g0434621 38.776 343 203 6 13 352 1 339 5.86e-82 254
Msa0398590 MtrunA17_Chr2g0294311 38.298 376 211 10 6 368 5 372 8.28e-81 251
Msa0398590 MtrunA17_Chr4g0068441 37.398 369 218 8 5 368 7 367 3.03e-80 250
Msa0398590 MtrunA17_Chr5g0396511 37.349 332 203 4 39 367 48 377 5.01e-73 232
Msa0398590 MtrunA17_Chr7g0275011 38.527 353 207 7 17 364 14 361 1.44e-72 230
Msa0398590 MtrunA17_Chr1g0189901 40.566 318 180 6 38 350 32 345 3.06e-72 229
Msa0398590 MtrunA17_Chr7g0274991 39.003 341 196 8 33 366 27 362 1.56e-71 228
Msa0398590 MtrunA17_Chr7g0275021 38.889 324 189 6 30 348 27 346 2.19e-71 227
Msa0398590 MtrunA17_Chr6g0457921 38.040 347 197 8 16 350 10 350 4.31e-70 224
Msa0398590 MtrunA17_Chr1g0189931 38.554 332 194 7 38 364 33 359 1.33e-69 223
Msa0398590 MtrunA17_Chr8g0374101 36.873 339 205 5 39 369 39 376 1.76e-69 222
Msa0398590 MtrunA17_Chr1g0182811 36.620 355 216 7 6 355 4 354 2.46e-68 219
Msa0398590 MtrunA17_Chr3g0099151 35.979 378 224 10 2 369 53 422 6.31e-68 220
Msa0398590 MtrunA17_Chr3g0099161 35.829 374 218 9 5 366 60 423 1.12e-67 219
Msa0398590 MtrunA17_Chr3g0092131 36.422 313 190 6 39 346 25 333 1.04e-66 215
Msa0398590 MtrunA17_Chr5g0444401 36.011 361 215 9 15 366 6 359 1.34e-66 214
Msa0398590 MtrunA17_Chr7g0275001 36.188 362 218 9 14 369 4 358 1.64e-66 214
Msa0398590 MtrunA17_Chr4g0008851 36.416 346 207 8 5 345 6 343 5.67e-66 213
Msa0398590 MtrunA17_Chr4g0060811 35.897 312 193 5 39 346 29 337 1.47e-65 212
Msa0398590 MtrunA17_Chr1g0156921 34.421 337 214 5 8 339 11 345 2.50e-65 211
Msa0398590 MtrunA17_Chr1g0156931 33.731 335 213 6 8 339 14 342 6.44e-65 210
Msa0398590 MtrunA17_Chr8g0371491 35.328 351 212 7 8 354 7 346 3.18e-63 206
Msa0398590 MtrunA17_Chr1g0156901 35.629 334 207 6 11 339 22 352 9.25e-63 205
Msa0398590 MtrunA17_Chr3g0085231 34.066 364 216 8 9 368 6 349 1.38e-62 204
Msa0398590 MtrunA17_Chr2g0320671 34.627 335 212 6 16 346 9 340 4.05e-62 202
Msa0398590 MtrunA17_Chr7g0215961 34.226 336 203 7 12 345 10 329 2.13e-61 201
Msa0398590 MtrunA17_Chr1g0189891 34.324 370 221 11 8 369 1 356 3.26e-61 201
Msa0398590 MtrunA17_Chr3g0105401 35.312 337 209 7 15 346 7 339 8.93e-61 199
Msa0398590 MtrunA17_Chr3g0142921 34.796 319 199 7 27 339 24 339 1.19e-60 199
Msa0398590 MtrunA17_Chr5g0438621 35.207 338 201 10 16 344 10 338 1.29e-60 199
Msa0398590 MtrunA17_Chr3g0099231 34.483 348 205 9 34 369 25 361 1.97e-60 199
Msa0398590 MtrunA17_Chr1g0156911 34.268 321 205 5 28 345 28 345 3.45e-60 197
Msa0398590 MtrunA17_Chr4g0027521 35.277 343 201 9 29 361 19 350 1.24e-59 196
Msa0398590 MtrunA17_Chr1g0156891 34.118 340 215 7 6 339 10 346 1.95e-59 196
Msa0398590 MtrunA17_Chr5g0438631 37.812 320 183 10 35 345 26 338 2.78e-59 195
Msa0398590 MtrunA17_Chr3g0120861 35.220 318 197 7 34 346 35 348 2.75e-58 193
Msa0398590 MtrunA17_Chr5g0438641 36.391 327 193 9 28 347 25 343 7.12e-58 192
Msa0398590 MtrunA17_Chr2g0330781 36.223 323 192 9 32 346 26 342 1.02e-57 191
Msa0398590 MtrunA17_Chr8g0341001 33.628 339 213 8 15 346 10 343 3.56e-57 190
Msa0398590 MtrunA17_Chr3g0142941 32.381 315 207 5 28 339 38 349 1.58e-56 189
Msa0398590 MtrunA17_Chr5g0420811 32.754 345 204 12 16 350 10 336 5.33e-55 184
Msa0398590 MtrunA17_Chr5g0432101 33.237 346 220 8 9 347 5 346 8.11e-55 184
Msa0398590 MtrunA17_Chr5g0405831 33.871 310 197 6 35 339 41 347 2.18e-54 183
Msa0398590 MtrunA17_Chr5g0405821 34.405 311 195 7 35 339 41 348 4.89e-54 182
Msa0398590 MtrunA17_Chr2g0283191 30.141 355 227 10 1 339 1 350 5.50e-54 182
Msa0398590 MtrunA17_Chr8g0371481 30.745 322 217 5 36 353 40 359 2.73e-50 172
Msa0398590 MtrunA17_Chr8g0371471 29.290 338 232 6 15 348 19 353 5.13e-49 169
Msa0398590 MtrunA17_Chr4g0046151 31.765 340 212 10 12 339 15 346 1.58e-48 167
Msa0398590 MtrunA17_Chr5g0437421 31.692 325 202 9 34 345 29 346 5.85e-47 163
Msa0398590 MtrunA17_Chr2g0301641 34.897 341 198 13 39 366 45 374 1.03e-46 164
Msa0398590 MtrunA17_Chr8g0370951 30.270 370 241 9 10 368 4 367 4.07e-46 161
Msa0398590 MtrunA17_Chr8g0370981 30.657 411 220 12 14 367 15 417 5.56e-46 162
Msa0398590 MtrunA17_Chr8g0344931 32.239 335 211 9 39 369 39 361 2.00e-45 159
Msa0398590 MtrunA17_Chr8g0344941 29.091 330 222 6 17 339 21 345 3.38e-45 159
Msa0398590 MtrunA17_Chr8g0349321 31.889 323 199 8 39 352 39 349 9.21e-45 157
Msa0398590 MtrunA17_Chr8g0349341 30.110 362 230 9 1 352 1 349 1.41e-44 157
Msa0398590 MtrunA17_Chr6g0459921 30.502 259 174 5 113 369 107 361 1.23e-41 149
Msa0398590 MtrunA17_Chr1g0157001 31.132 318 196 8 42 352 41 342 5.43e-41 148
Msa0398590 MtrunA17_Chr2g0284931 34.979 243 130 6 129 369 4 220 7.96e-41 143
Msa0398590 MtrunA17_Chr6g0455661 33.193 238 142 5 145 369 239 472 4.67e-40 147
Msa0398590 MtrunA17_Chr6g0455661 46.721 122 60 2 13 130 3 123 1.12e-25 107
Msa0398590 MtrunA17_Chr8g0349301 32.028 281 176 7 39 316 39 307 7.02e-39 141
Msa0398590 MtrunA17_Chr8g0349331 26.596 376 224 8 1 368 1 332 3.11e-36 134
Msa0398590 MtrunA17_Chr8g0370961 30.435 230 145 5 131 355 13 232 4.11e-35 129
Msa0398590 MtrunA17_Chr5g0440501 28.571 245 164 4 135 368 6 250 1.14e-32 122
Msa0398590 MtrunA17_Chr7g0275291 27.792 385 240 14 1 361 1 371 1.98e-32 125
Msa0398590 MtrunA17_Chr2g0285041 43.548 124 68 2 90 211 1 124 1.33e-31 116
Msa0398590 MtrunA17_Chr6g0450721 27.882 373 234 10 6 361 1 355 5.78e-31 120
Msa0398590 MtrunA17_Chr7g0229591 37.374 198 114 6 15 205 4 198 1.16e-30 116
Msa0398590 MtrunA17_Chr1g0160031 28.533 368 222 13 3 345 10 361 3.58e-30 119
Msa0398590 MtrunA17_Chr1g0160011 27.907 387 237 15 4 365 11 380 6.41e-30 118
Msa0398590 MtrunA17_Chr8g0347751 27.473 364 214 13 39 369 38 384 6.94e-30 118
Msa0398590 MtrunA17_Chr6g0450731 26.984 378 238 10 1 361 1 357 8.84e-30 117
Msa0398590 MtrunA17_Chr4g0027571 31.100 209 141 3 138 345 3 209 8.04e-29 111
Msa0398590 MtrunA17_Chr1g0178941 26.087 345 204 12 39 361 42 357 1.60e-28 114
Msa0398590 MtrunA17_Chr7g0254461 26.250 400 246 13 1 363 2 389 4.06e-28 113
Msa0398590 MtrunA17_Chr1g0160101 27.778 342 200 10 36 345 41 367 2.82e-27 111
Msa0398590 MtrunA17_Chr6g0450711 26.343 391 243 10 1 361 82 457 4.92e-27 111
Msa0398590 MtrunA17_Chr1g0159991 27.273 385 232 12 13 365 10 378 5.34e-27 110
Msa0398590 MtrunA17_Chr6g0450701 28.117 377 226 13 1 348 1 361 5.29e-26 107
Msa0398590 MtrunA17_Chr8g0381581 26.913 379 226 12 8 351 11 373 3.27e-25 105
Msa0398590 MtrunA17_Chr6g0469511 46.087 115 58 3 32 143 25 138 1.03e-24 98.2
Msa0398590 MtrunA17_Chr1g0178931 26.480 321 189 12 39 341 39 330 2.23e-24 102
Msa0398590 MtrunA17_Chr1g0159971 27.642 369 217 11 12 345 18 371 2.32e-24 103
Msa0398590 MtrunA17_Chr7g0271551 26.531 343 212 11 39 361 38 360 2.91e-24 102
Msa0398590 MtrunA17_Chr1g0159981 26.494 385 235 13 13 365 20 388 3.79e-24 102
Msa0398590 MtrunA17_Chr1g0189911 34.483 145 92 3 223 366 1 143 1.73e-23 95.1
Msa0398590 MtrunA17_Chr2g0283511 26.757 370 232 15 1 346 1 355 4.10e-23 99.4
Msa0398590 MtrunA17_Chr7g0226931 23.573 403 252 13 6 361 1 394 8.52e-23 98.6
Msa0398590 MtrunA17_Chr8g0352901 26.849 365 228 11 13 348 1 355 9.95e-23 98.2
Msa0398590 MtrunA17_Chr7g0226911 23.750 400 252 13 9 369 1 386 1.17e-22 98.2
Msa0398590 MtrunA17_Chr4g0027561 42.500 120 64 3 12 128 7 124 1.42e-22 92.4
Msa0398590 MtrunA17_Chr7g0226941 26.136 352 225 9 36 361 32 374 2.61e-22 97.1
Msa0398590 MtrunA17_Chr2g0321991 44.954 109 54 4 17 120 12 119 2.19e-21 88.6
Msa0398590 MtrunA17_Chr7g0273101 24.370 357 229 9 36 361 28 374 6.55e-21 93.2
Msa0398590 MtrunA17_Chr2g0317261 24.148 352 236 11 12 347 3 339 7.21e-21 92.8
Msa0398590 MtrunA17_Chr2g0317271 25.000 324 214 9 38 347 31 339 9.09e-21 92.4
Msa0398590 MtrunA17_Chr0c01g0489581 25.000 324 214 9 38 347 31 339 1.09e-20 92.0
Msa0398590 MtrunA17_Chr1g0198381 25.776 322 206 12 39 349 4 303 1.15e-20 91.3
Msa0398590 MtrunA17_Chr7g0266061 25.926 324 188 12 39 341 44 336 1.83e-20 91.3
Msa0398590 MtrunA17_Chr0c01g0489571 25.000 324 214 9 38 347 31 339 2.04e-20 91.3
Msa0398590 MtrunA17_Chr1g0189921 40.984 122 65 4 18 134 11 130 2.31e-20 86.7
Msa0398590 MtrunA17_Chr1g0198351 27.019 322 185 11 39 341 45 335 8.40e-20 89.7
Msa0398590 MtrunA17_Chr2g0283481 24.789 355 231 14 15 346 28 369 1.26e-19 89.4
Msa0398590 MtrunA17_Chr3g0104821 24.625 333 217 12 39 347 46 368 2.91e-19 88.2
Msa0398590 MtrunA17_Chr4g0057991 24.000 325 219 9 39 345 41 355 4.52e-19 87.8
Msa0398590 MtrunA17_Chr7g0229581 31.852 135 91 1 212 345 8 142 1.45e-18 82.0
Msa0398590 MtrunA17_Chr8g0370971 48.000 100 45 2 36 128 37 136 1.81e-18 82.0
Msa0398590 MtrunA17_Chr8g0339251 27.419 310 190 10 13 306 1 291 2.75e-18 84.7
Msa0398590 MtrunA17_Chr1g0191461 22.527 364 249 8 9 348 4 358 3.20e-18 85.1
Msa0398590 MtrunA17_Chr2g0301581 24.167 360 231 12 7 347 5 341 5.60e-18 84.3
Msa0398590 MtrunA17_Chr2g0308201 48.193 83 42 1 8 90 7 88 6.57e-18 78.2
Msa0398590 MtrunA17_Chr2g0285051 65.517 58 20 0 34 91 33 90 3.68e-17 77.0
Msa0398590 MtrunA17_Chr2g0301541 23.889 360 232 12 7 347 5 341 9.41e-17 80.9
Msa0398590 MtrunA17_Chr2g0283531 27.027 333 208 13 39 347 33 354 1.03e-16 80.9
Msa0398590 MtrunA17_Chr3g0112821 23.780 328 218 13 39 347 32 346 2.07e-16 79.7
Msa0398590 MtrunA17_Chr7g0228261 37.500 88 54 1 279 366 3 89 9.05e-16 72.4
Msa0398590 MtrunA17_Chr1g0198391 23.304 339 196 12 39 341 35 345 1.08e-13 71.6
Msa0398590 MtrunA17_Chr4g0018561 60.000 55 21 1 32 85 25 79 1.10e-13 66.6
Msa0398590 MtrunA17_Chr3g0093031 22.892 332 221 13 39 347 32 351 3.45e-13 70.1
Msa0398590 MtrunA17_Chr4g0018571 31.159 138 94 1 212 348 31 168 1.11e-12 65.9
Msa0398590 MtrunA17_Chr3g0112691 24.118 340 205 13 39 347 32 349 6.29e-12 66.2
Msa0398590 MtrunA17_Chr2g0284981 38.462 78 38 3 295 368 8 79 9.30e-11 58.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0398590 AT1G29670.2 70.219 366 104 4 5 369 70 431 0.0 527
Msa0398590 AT1G29670.1 70.219 366 104 4 5 369 2 363 0.0 526
Msa0398590 AT1G29660.1 67.847 367 112 4 5 369 2 364 0.0 515
Msa0398590 AT5G45670.1 66.852 359 117 2 13 369 4 362 0.0 513
Msa0398590 AT4G18970.1 70.206 339 100 1 32 369 23 361 2.40e-178 499
Msa0398590 AT4G18970.2 70.000 340 101 1 31 369 22 361 7.98e-177 498
Msa0398590 AT1G33811.1 49.462 372 178 7 6 369 1 370 1.27e-123 361
Msa0398590 AT1G71691.2 49.853 339 166 4 31 369 49 383 3.02e-119 350
Msa0398590 AT5G08460.1 46.154 377 192 8 1 369 12 385 4.14e-114 337
Msa0398590 AT1G71250.1 45.380 368 195 5 5 369 9 373 2.41e-110 327
Msa0398590 AT5G15720.1 47.110 346 173 7 30 369 23 364 2.77e-107 319
Msa0398590 AT2G19010.2 39.891 366 198 7 7 368 30 377 2.15e-94 287
Msa0398590 AT2G19010.1 41.176 340 180 7 16 351 10 333 2.23e-94 286
Msa0398590 AT2G19050.1 42.105 342 172 7 34 369 28 349 4.98e-92 280
Msa0398590 AT1G71691.1 45.423 284 151 4 86 369 3 282 1.30e-88 269
Msa0398590 AT2G19060.1 42.547 322 164 7 35 350 28 334 3.72e-87 267
Msa0398590 AT4G30140.1 45.373 335 163 8 34 366 30 346 1.87e-86 265
Msa0398590 AT1G71691.3 48.496 266 134 3 31 296 49 311 1.34e-83 257
Msa0398590 AT5G15720.3 44.291 289 152 6 87 369 48 333 1.15e-80 250
Msa0398590 AT2G19050.2 47.200 250 123 3 34 282 28 269 6.86e-80 246
Msa0398590 AT5G15720.2 45.788 273 139 6 30 296 23 292 1.57e-74 234
Msa0398590 AT3G50400.1 39.755 327 186 7 39 355 36 361 2.44e-74 235
Msa0398590 AT2G23540.1 37.249 349 211 4 8 348 19 367 4.51e-74 235
Msa0398590 AT5G37690.1 36.499 337 205 7 18 350 8 339 6.55e-73 231
Msa0398590 AT5G33370.1 37.389 337 201 7 38 369 31 362 6.96e-72 229
Msa0398590 AT4G28780.1 36.648 352 213 5 8 355 5 350 8.66e-71 226
Msa0398590 AT3G04290.1 40.625 320 179 7 33 345 23 338 1.09e-70 226
Msa0398590 AT4G10950.2 35.398 339 214 4 33 368 67 403 1.28e-70 226
Msa0398590 AT5G37690.2 35.417 336 204 8 17 350 7 331 4.63e-68 218
Msa0398590 AT4G10950.1 35.312 337 213 4 33 368 67 399 5.67e-68 219
Msa0398590 AT1G74460.1 36.859 312 190 6 39 346 25 333 8.38e-68 218
Msa0398590 AT5G18430.1 36.000 350 216 5 13 355 1 349 1.43e-66 215
Msa0398590 AT5G55050.1 38.509 322 182 9 35 345 37 353 6.10e-64 208
Msa0398590 AT5G22810.1 35.380 342 211 7 13 346 8 347 2.02e-63 206
Msa0398590 AT3G53100.1 37.658 316 190 6 35 346 27 339 3.95e-63 206
Msa0398590 AT5G41890.1 35.537 363 205 10 24 366 19 372 1.25e-62 205
Msa0398590 AT5G03820.1 35.673 342 211 7 11 346 7 345 4.98e-61 200
Msa0398590 AT1G75880.1 33.621 348 212 8 12 345 20 362 8.38e-61 200
Msa0398590 AT5G03820.2 35.673 342 211 7 11 346 35 373 1.33e-60 200
Msa0398590 AT1G75880.2 33.908 348 210 9 12 345 20 361 1.53e-60 199
Msa0398590 AT2G42990.1 36.420 324 189 9 31 345 22 337 1.90e-60 199
Msa0398590 AT2G04570.1 35.244 349 210 10 12 352 4 344 3.14e-60 198
Msa0398590 AT1G75890.2 35.494 324 193 10 36 350 46 362 3.53e-59 196
Msa0398590 AT1G75890.3 35.494 324 193 10 36 350 75 391 5.23e-59 196
Msa0398590 AT5G03810.1 34.302 344 217 8 9 346 1 341 6.35e-58 192
Msa0398590 AT1G75890.1 34.226 336 194 10 36 350 46 375 5.40e-57 190
Msa0398590 AT3G14820.1 32.448 339 216 8 15 348 10 340 9.02e-57 189
Msa0398590 AT4G26790.1 34.259 324 200 8 30 346 22 339 3.72e-56 187
Msa0398590 AT4G26790.2 34.259 324 200 8 30 346 22 339 3.72e-56 187
Msa0398590 AT5G42170.1 33.333 330 208 7 21 345 34 356 4.03e-56 188
Msa0398590 AT1G58430.1 32.070 343 220 9 13 346 9 347 9.61e-55 184
Msa0398590 AT4G16230.1 40.756 238 135 4 17 250 10 245 3.71e-54 179
Msa0398590 AT2G24560.1 32.317 328 211 8 26 346 23 346 5.38e-54 182
Msa0398590 AT1G75900.1 31.231 333 219 7 12 339 18 345 5.81e-54 182
Msa0398590 AT5G33370.2 38.491 265 154 6 37 296 30 290 2.05e-53 180
Msa0398590 AT2G30220.1 31.871 342 222 8 12 346 8 345 8.06e-53 179
Msa0398590 AT3G16370.1 33.754 317 202 7 35 346 28 341 1.33e-52 178
Msa0398590 AT2G31540.1 31.778 343 221 9 13 346 9 347 1.47e-52 178
Msa0398590 AT1G20135.1 31.515 330 208 8 14 339 5 320 1.98e-51 174
Msa0398590 AT2G30310.1 31.402 328 214 8 26 346 23 346 4.25e-51 174
Msa0398590 AT1G06990.1 32.808 317 201 8 36 345 36 347 5.05e-51 174
Msa0398590 AT1G20132.1 34.405 311 191 7 36 339 60 364 6.88e-51 174
Msa0398590 AT1G59406.1 31.884 345 214 10 13 345 1 336 7.74e-51 173
Msa0398590 AT1G59030.1 31.884 345 214 10 13 345 1 336 7.74e-51 173
Msa0398590 AT1G58725.1 31.884 345 214 10 13 345 1 336 7.74e-51 173
Msa0398590 AT5G63170.1 32.615 325 200 8 19 339 10 319 2.56e-50 172
Msa0398590 AT2G03980.2 32.827 329 200 8 36 354 42 359 3.05e-50 172
Msa0398590 AT2G03980.3 32.827 329 200 8 36 354 42 359 3.05e-50 172
Msa0398590 AT2G03980.1 32.827 329 200 8 36 354 42 359 3.05e-50 172
Msa0398590 AT2G03980.4 32.827 329 200 8 36 354 42 359 3.05e-50 172
Msa0398590 AT1G20120.1 31.307 329 215 7 26 348 67 390 3.66e-49 171
Msa0398590 AT5G45950.1 31.325 332 215 9 28 355 31 353 6.73e-48 166
Msa0398590 AT1G20130.2 31.611 329 201 8 35 347 182 502 3.52e-47 168
Msa0398590 AT1G23500.1 33.437 323 188 8 25 339 23 326 5.47e-47 163
Msa0398590 AT2G40250.1 28.834 326 219 7 33 349 32 353 6.27e-47 164
Msa0398590 AT1G20130.1 31.915 329 200 8 35 347 202 522 7.64e-47 167
Msa0398590 AT1G73610.1 32.686 309 188 7 35 339 33 325 1.48e-46 162
Msa0398590 AT1G58520.3 32.911 316 193 9 35 345 28 329 2.25e-46 162
Msa0398590 AT1G58525.1 32.911 316 193 9 35 345 28 329 2.25e-46 162
Msa0398590 AT3G43570.1 30.117 342 194 11 12 345 3 307 8.03e-45 157
Msa0398590 AT1G53920.1 30.270 370 230 10 17 369 26 384 9.68e-45 158
Msa0398590 AT5G45960.1 29.102 323 216 8 26 339 36 354 3.09e-43 154
Msa0398590 AT1G75920.2 30.294 340 216 9 17 348 7 333 6.04e-43 152
Msa0398590 AT1G75930.1 29.565 345 216 10 11 347 7 332 7.29e-43 152
Msa0398590 AT1G71120.1 28.324 346 227 8 30 367 24 356 6.81e-41 147
Msa0398590 AT2G24560.2 32.258 279 178 8 26 297 23 297 1.28e-39 143
Msa0398590 AT1G75920.1 29.014 355 216 10 17 348 2 343 4.54e-39 142
Msa0398590 AT3G43550.1 31.379 290 182 9 15 296 6 286 3.59e-38 139
Msa0398590 AT1G75910.1 30.000 340 218 8 18 348 5 333 2.27e-37 138
Msa0398590 AT3G14225.2 28.779 344 223 9 39 369 39 373 1.89e-36 136
Msa0398590 AT3G14225.1 28.613 346 225 9 39 369 39 377 9.70e-36 134
Msa0398590 AT1G53940.2 31.629 313 195 9 39 339 41 346 4.26e-35 132
Msa0398590 AT2G04020.1 35.470 234 132 6 21 243 21 246 7.24e-35 129
Msa0398590 AT5G40990.1 30.247 324 201 10 39 347 39 352 1.01e-34 131
Msa0398590 AT1G75920.3 27.811 338 196 9 17 348 7 302 5.01e-34 128
Msa0398590 AT1G75920.4 28.947 304 197 8 51 348 15 305 1.03e-33 127
Msa0398590 AT2G04020.2 35.526 228 128 6 21 237 21 240 5.89e-33 125
Msa0398590 AT1G53990.1 28.615 325 208 8 39 352 37 348 1.08e-32 125
Msa0398590 AT1G54030.1 27.812 320 205 11 39 355 54 350 3.52e-28 114
Msa0398590 AT2G31550.1 28.571 210 144 4 142 348 2 208 6.20e-28 109
Msa0398590 AT4G16233.1 41.085 129 74 2 242 369 3 130 3.38e-27 105
Msa0398590 AT1G53940.1 31.439 264 168 8 39 296 41 297 4.77e-27 109
Msa0398590 AT3G05180.1 27.778 342 202 12 36 346 35 362 6.32e-27 110
Msa0398590 AT3G62280.1 28.261 322 208 10 36 345 35 345 1.79e-26 108
Msa0398590 AT3G48460.1 27.245 323 201 11 39 339 40 350 5.01e-26 107
Msa0398590 AT4G01130.1 25.278 360 232 11 13 345 11 360 7.39e-26 107
Msa0398590 AT3G27950.1 24.194 372 246 9 13 360 6 365 1.61e-25 106
Msa0398590 AT1G54790.3 24.737 380 245 11 13 361 8 377 2.78e-25 105
Msa0398590 AT1G67830.1 27.326 344 205 11 34 345 27 357 3.59e-25 105
Msa0398590 AT1G31550.2 25.876 371 229 12 1 342 1 354 4.44e-25 105
Msa0398590 AT1G54020.2 24.606 317 218 8 39 352 35 333 5.03e-25 105
Msa0398590 AT1G56670.1 24.798 371 246 11 11 363 14 369 1.93e-24 103
Msa0398590 AT5G14450.1 25.201 373 243 10 16 361 19 382 3.59e-24 102
Msa0398590 AT1G09390.1 25.199 377 253 12 1 361 1 364 3.92e-24 102
Msa0398590 AT1G28600.1 26.230 366 227 14 1 341 1 348 8.94e-24 101
Msa0398590 AT1G28640.1 23.834 386 249 14 2 359 3 371 1.38e-23 101
Msa0398590 AT1G54790.1 24.611 386 251 11 6 361 1 376 1.65e-23 100
Msa0398590 AT1G28570.1 24.802 379 232 16 1 347 1 358 2.38e-23 100
Msa0398590 AT1G31550.1 25.135 370 230 12 1 342 1 351 3.26e-23 100
Msa0398590 AT1G28650.1 24.543 383 238 14 8 359 11 373 4.65e-23 99.8
Msa0398590 AT5G03610.1 28.182 330 202 14 39 356 45 351 1.54e-22 97.8
Msa0398590 AT2G27360.1 26.462 325 206 13 41 341 37 352 2.36e-22 97.8
Msa0398590 AT5G03600.2 26.254 339 204 12 19 341 30 338 3.18e-22 97.1
Msa0398590 AT5G03600.1 26.006 323 194 11 34 341 11 303 3.80e-22 96.3
Msa0398590 AT1G28610.2 25.068 367 230 13 1 341 1 348 4.72e-22 96.7
Msa0398590 AT3G14220.1 27.794 349 229 12 24 366 19 350 7.30e-22 95.9
Msa0398590 AT3G09930.2 27.103 321 192 14 39 341 41 337 1.29e-21 95.1
Msa0398590 AT3G09930.1 27.103 321 192 14 39 341 41 337 1.29e-21 95.1
Msa0398590 AT3G26430.1 26.765 340 208 11 36 345 30 358 1.33e-21 95.5
Msa0398590 AT1G54010.1 22.933 375 259 12 1 366 1 354 2.07e-21 95.1
Msa0398590 AT1G28660.1 25.714 350 212 13 41 359 39 371 2.13e-21 94.7
Msa0398590 AT1G54000.1 22.252 373 248 13 12 362 8 360 4.82e-21 94.0
Msa0398590 AT1G28660.2 24.658 365 223 15 8 341 9 352 1.79e-20 92.0
Msa0398590 AT3G62280.2 28.516 256 165 7 36 284 35 279 4.17e-20 89.7
Msa0398590 AT4G16220.1 52.174 92 41 2 31 120 24 114 4.19e-20 89.0
Msa0398590 AT1G28580.1 24.036 337 220 11 41 352 41 366 5.23e-20 90.9
Msa0398590 AT1G28590.1 25.225 333 211 12 41 347 40 360 5.69e-20 90.9
Msa0398590 AT1G54790.2 23.301 412 250 12 6 361 1 402 1.18e-19 90.1
Msa0398590 AT4G01130.2 25.413 303 202 9 13 301 11 303 3.09e-19 87.8
Msa0398590 AT1G28670.1 24.768 323 214 12 41 341 39 354 5.33e-19 87.8
Msa0398590 AT3G14210.1 24.848 330 214 10 39 355 38 346 9.19e-19 87.4
Msa0398590 AT1G54030.2 28.627 255 155 10 39 290 54 284 1.78e-17 82.8
Msa0398590 AT5G45910.1 27.072 362 222 16 13 341 1 353 4.41e-16 79.3
Msa0398590 AT1G56670.2 25.084 299 196 9 11 296 14 297 4.90e-16 78.2
Msa0398590 AT4G01130.3 23.827 277 179 8 96 345 3 274 4.99e-16 78.2
Msa0398590 AT1G54020.1 21.774 248 176 5 107 352 16 247 2.21e-14 73.2
Msa0398590 AT1G54020.5 21.774 248 176 5 107 352 16 247 2.21e-14 73.2
Msa0398590 AT1G54020.3 21.774 248 176 5 107 352 16 247 2.21e-14 73.2
Msa0398590 AT2G36325.1 23.810 315 207 11 39 341 49 342 7.29e-14 72.4
Msa0398590 AT1G54020.4 23.711 194 143 3 161 352 8 198 1.12e-13 70.5
Msa0398590 AT1G28610.1 29.878 164 101 6 41 194 35 194 2.20e-12 67.0

Find 111 sgRNAs with CRISPR-Local

Find 309 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCTTCTAATTTAATTAAATT+TGG 0.121221 3_2:+20474469 None:intergenic
GCAAGGAAAATGGCTTTATT+TGG 0.146120 3_2:-20476748 Msa0398590:CDS
ATGGGTAATGGTGGTGGTTA+TGG 0.182614 3_2:-20479945 Msa0398590:CDS
TGAAGTGGATTATGAATTTA+TGG 0.185723 3_2:-20479964 Msa0398590:CDS
TCAGTCCGTTGTTAAATAAT+TGG 0.211913 3_2:+20476638 None:intergenic
CCTTATGGGATTGACTTTAA+TGG 0.214241 3_2:-20479800 Msa0398590:CDS
AAAGCTAATTATCTTCCTTA+TGG 0.223489 3_2:-20479815 Msa0398590:CDS
ATTTCTTGCTTCAATTAATA+TGG 0.223500 3_2:-20480008 Msa0398590:exon
ATAGGAATGAGTATCTATTT+TGG 0.228224 3_2:-20474958 Msa0398590:CDS
TGGGTAATGGTGGTGGTTAT+GGG 0.231922 3_2:-20479944 Msa0398590:CDS
TTGGTCTCTGGCTGTTGAAT+AGG 0.237689 3_2:+20478301 None:intergenic
AAACTGTAATTGTGGTATTA+AGG 0.240781 3_2:-20474816 Msa0398590:three_prime_UTR
CAATAACAATCTTAATTCTT+TGG 0.241365 3_2:-20479840 Msa0398590:CDS
CTATATAATTGTCACATTTC+AGG 0.249961 3_2:-20480106 None:intergenic
TGACTCCTTTGAGTATTTCT+TGG 0.264181 3_2:+20478282 None:intergenic
TGTTGATGGTATAAATATAA+TGG 0.279136 3_2:-20474518 Msa0398590:three_prime_UTR
TGTAAGTGAATGAGTGGATA+TGG 0.280252 3_2:+20480077 None:intergenic
AAATTTGACAGCTGAGCTTT+TGG 0.281884 3_2:-20478345 Msa0398590:intron
TTTCATGAAACTACACTTGA+TGG 0.287441 3_2:+20474622 None:intergenic
CCAAATTTAATTAAATTAGA+AGG 0.310157 3_2:-20474469 Msa0398590:intron
CTTCAATTAATATGGCATCT+AGG 0.328844 3_2:-20480000 Msa0398590:exon
CCACCTGGGACACTGTCTTT+TGG 0.333033 3_2:+20477643 None:intergenic
AAGCTAATTATCTTCCTTAT+GGG 0.333610 3_2:-20479814 Msa0398590:CDS
CAAGGAAAATGGCTTTATTT+GGG 0.335133 3_2:-20476747 Msa0398590:CDS
TTATTTGGGATTGGTCAAAT+AGG 0.335977 3_2:-20476733 Msa0398590:CDS
TTCATCTATGTAAATACTTA+TGG 0.337976 3_2:-20476571 Msa0398590:CDS
GACTTTAATGGTGGTCCAAC+TGG 0.345704 3_2:-20479788 Msa0398590:CDS
TAACTATGGAGCAAGGAAAA+TGG 0.350614 3_2:-20476758 Msa0398590:CDS
TGGTCTCTGGCTGTTGAATA+GGG 0.352173 3_2:+20478302 None:intergenic
ATAAATATAATGGAACTTAT+TGG 0.354172 3_2:-20474508 Msa0398590:three_prime_UTR
TTTGAGTATTTCTTGGTCTC+TGG 0.354674 3_2:+20478289 None:intergenic
TGGTGGTGGTTATGGGTTTG+TGG 0.357741 3_2:-20479937 Msa0398590:CDS
AATGAAGGGTGTTGTGGAAT+AGG 0.363284 3_2:-20475031 Msa0398590:CDS
TTCAAACCCCATGTAGTAAT+AGG 0.364637 3_2:-20474976 Msa0398590:CDS
CAAGAATCTAATATAGTGTT+TGG 0.368980 3_2:-20474674 Msa0398590:three_prime_UTR
TCAACTCAACAATGAGCTTT+CGG 0.384478 3_2:-20476602 Msa0398590:CDS
TATTACTACATGGGGTTTGA+AGG 0.386243 3_2:+20474978 None:intergenic
TGTTGGTGATTGTTTATTGT+GGG 0.392785 3_2:-20474773 Msa0398590:three_prime_UTR
ATGCATCTATTCCATTGGAT+TGG 0.398195 3_2:-20477574 Msa0398590:CDS
GAGGTTGGCAACACTATAAT+TGG 0.404888 3_2:-20474917 Msa0398590:CDS
TGCATCTATTCCATTGGATT+GGG 0.422230 3_2:-20477573 Msa0398590:CDS
TATGGGTTTGTGGAGTAGTA+AGG 0.423823 3_2:-20479927 Msa0398590:CDS
TTCAATTAATATGGCATCTA+GGG 0.424500 3_2:-20479999 Msa0398590:exon
ATAAACAACCCATCATCATT+TGG 0.432626 3_2:-20476532 Msa0398590:intron
AATTATGCTTCTGCTGCTGC+TGG 0.433063 3_2:-20478260 Msa0398590:CDS
AAAATGGCTTTATTTGGGAT+TGG 0.436591 3_2:-20476742 Msa0398590:CDS
TTGTGGTATTAAGGTTATTG+TGG 0.437235 3_2:-20474807 Msa0398590:three_prime_UTR
GGCATAAGGGTTACAAATGA+AGG 0.439702 3_2:-20475046 Msa0398590:CDS
AAATAATTACCAAATGATGA+TGG 0.442563 3_2:+20476523 None:intergenic
CAGGCATGAAATAGTTGTTA+AGG 0.445948 3_2:+20477538 None:intergenic
TCCCAGGTGGTAAATTTGCT+TGG 0.452640 3_2:-20477630 Msa0398590:CDS
AGCAAATGCATCTATTCCAT+TGG 0.461580 3_2:-20477579 Msa0398590:CDS
ATAAGGAAGATAATTAGCTT+TGG 0.475522 3_2:+20479817 None:intergenic
TTGTTGGTGATTGTTTATTG+TGG 0.481161 3_2:-20474774 Msa0398590:three_prime_UTR
GCTAAGCGATTAATGTCAAT+AGG 0.481404 3_2:+20474854 None:intergenic
GCTGGAATTAGAGAAGAAAC+TGG 0.485661 3_2:-20478242 Msa0398590:CDS
GAAGTGGATTATGAATTTAT+GGG 0.490510 3_2:-20479963 Msa0398590:CDS
GATTATGAATTTATGGGTAA+TGG 0.492834 3_2:-20479957 Msa0398590:CDS
GGTAAATTTGCTTGGAGATG+AGG 0.494258 3_2:-20477622 Msa0398590:CDS
GGTGACTCTTTGGTAGATGA+TGG 0.498564 3_2:-20479866 Msa0398590:CDS
TAGTGTTGCCAACCTCGGTT+GGG 0.502956 3_2:+20474924 None:intergenic
CTACCAAAAGACAGTGTCCC+AGG 0.504703 3_2:-20477646 Msa0398590:CDS
TATGAATTTATGGGTAATGG+TGG 0.507358 3_2:-20479954 Msa0398590:CDS
ATTACTACATGGGGTTTGAA+GGG 0.507716 3_2:+20474979 None:intergenic
TACTCATTCCTATTACTACA+TGG 0.509268 3_2:+20474968 None:intergenic
CTCCAAGCAAATTTACCACC+TGG 0.509858 3_2:+20477628 None:intergenic
AAGCATATGCTCAACAACTC+AGG 0.510698 3_2:-20477461 Msa0398590:CDS
ATATAGTGTGTTTGTTTCCA+CGG 0.518367 3_2:+20474576 None:intergenic
CTCATTCCTATTACTACATG+GGG 0.527908 3_2:+20474970 None:intergenic
GCATTTCACCCAACCGAGGT+TGG 0.529738 3_2:-20474932 Msa0398590:CDS
ATAGTGTTGCCAACCTCGGT+TGG 0.530560 3_2:+20474923 None:intergenic
TATGGGATTGACTTTAATGG+TGG 0.533249 3_2:-20479797 Msa0398590:CDS
TCAACACAAGTGGTACCATC+TGG 0.537783 3_2:+20476679 None:intergenic
AATAATTACCAAATGATGAT+GGG 0.538591 3_2:+20476524 None:intergenic
ATTGATTCTTTCAACACAAG+TGG 0.538886 3_2:+20476669 None:intergenic
AATATAATGGAACTTATTGG+TGG 0.540753 3_2:-20474505 Msa0398590:three_prime_UTR
GAATTTATGGGTAATGGTGG+TGG 0.541068 3_2:-20479951 Msa0398590:CDS
TGTCTACCACTAGGATATGC+AGG 0.541118 3_2:+20477519 None:intergenic
CCATTAAAGTCAATCCCATA+AGG 0.541311 3_2:+20479800 None:intergenic
TTTGGATCCACATCCAAAGA+AGG 0.542085 3_2:-20474656 Msa0398590:three_prime_UTR
CCATTGGAGAACCTTCCAGT+TGG 0.542612 3_2:+20479773 None:intergenic
AATGTAAGTATTATAAAATG+TGG 0.545575 3_2:+20480046 None:intergenic
ATGAAGTAGCAAGGTACTTG+AGG 0.547628 3_2:+20479893 None:intergenic
ATCATTGCTACCCAATCCAA+TGG 0.552490 3_2:+20477563 None:intergenic
GCAAACCAATTATTTAACAA+CGG 0.566624 3_2:-20476643 Msa0398590:CDS
AATTATAGTGTTGCCAACCT+CGG 0.567201 3_2:+20474919 None:intergenic
GTAAGTGAATGAGTGGATAT+GGG 0.571441 3_2:+20480078 None:intergenic
ACTCATTCCTATTACTACAT+GGG 0.573415 3_2:+20474969 None:intergenic
GTTACAAATGAAGGGTGTTG+TGG 0.575255 3_2:-20475037 Msa0398590:CDS
TTACTACATGGGGTTTGAAG+GGG 0.591767 3_2:+20474980 None:intergenic
TGTGTGTGTAAGTGAATGAG+TGG 0.593617 3_2:+20480071 None:intergenic
TTAATGGTGGTCCAACTGGA+AGG 0.597104 3_2:-20479784 Msa0398590:CDS
TCCAAGCAAATTTACCACCT+GGG 0.599727 3_2:+20477629 None:intergenic
AGCATATGCTCAACAACTCA+GGG 0.599906 3_2:-20477460 Msa0398590:intron
TGATGATGAAACTGTAATTG+TGG 0.602948 3_2:-20474824 Msa0398590:three_prime_UTR
TTAGCTCAAAACAGTCCAGA+TGG 0.606226 3_2:-20476694 Msa0398590:CDS
CCAACTGGAAGGTTCTCCAA+TGG 0.606700 3_2:-20479773 Msa0398590:CDS
GGGAAGTCAATATTGTGAAG+TGG 0.607636 3_2:-20479979 Msa0398590:CDS
TTGGCAACACTATAATTGGT+AGG 0.611699 3_2:-20474913 Msa0398590:CDS
GCATAAGGGTTACAAATGAA+GGG 0.614971 3_2:-20475045 Msa0398590:CDS
AAAACTACTGTTGATGTCGT+TGG 0.615318 3_2:-20479749 Msa0398590:intron
ATTTATAGTCAACAGACTAG+TGG 0.616529 3_2:+20474356 None:intergenic
AGAACATCAGCATACTGTTG+TGG 0.626235 3_2:+20477489 None:intergenic
AGAGACCAAGAAATACTCAA+AGG 0.628299 3_2:-20478287 Msa0398590:CDS
GGTGTAAACTGTCTACCACT+AGG 0.647660 3_2:+20477510 None:intergenic
GGATGCATTTCACCCAACCG+AGG 0.663914 3_2:-20474936 Msa0398590:CDS
TTCATGCCTGCATATCCTAG+TGG 0.673085 3_2:-20477525 Msa0398590:CDS
TGTGGAATAGGAAGAAACAA+TGG 0.683683 3_2:-20475019 Msa0398590:CDS
ATGAATAAATAAGATGTACG+AGG 0.718635 3_2:-20474321 Msa0398590:three_prime_UTR
ATGATGCAATCGTGTCACCG+TGG 0.723041 3_2:-20474593 Msa0398590:three_prime_UTR
CCAAAAGACAGTGTCCCAGG+TGG 0.761307 3_2:-20477643 Msa0398590:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTTTTTTTTTAAATTATA+AGG + chr3_2:20479137-20479156 None:intergenic 0.0%
!! TCTTTCAAAAAAAAAAAAAA+TGG + chr3_2:20474723-20474742 None:intergenic 10.0%
!! ATAAAATTAACATTTCAAAA+TGG + chr3_2:20474756-20474775 None:intergenic 10.0%
!! ATAAAAATTATGTCAAAAAA+AGG + chr3_2:20474784-20474803 None:intergenic 10.0%
!! ATAATTTGATTAATAAAAAG+AGG - chr3_2:20474824-20474843 Msa0398590:three_prime_UTR 10.0%
!!! TAAAGTTTAATCAATTTTAA+AGG + chr3_2:20474893-20474912 None:intergenic 10.0%
!! AATAATCAAAATGATTTATT+AGG + chr3_2:20475126-20475145 None:intergenic 10.0%
!! AAAATAAATATATAATGAGT+TGG - chr3_2:20475329-20475348 Msa0398590:intron 10.0%
!!! GTAGTTTTTTTTTTTTTTTA+AGG + chr3_2:20475383-20475402 None:intergenic 10.0%
!! AAACTAAAAGATTATATAAA+AGG - chr3_2:20475437-20475456 Msa0398590:intron 10.0%
!!! ATAACTATAATTTTCTTTTT+TGG + chr3_2:20475971-20475990 None:intergenic 10.0%
!! AATAACTATAAAAAATGAAA+TGG + chr3_2:20479205-20479224 None:intergenic 10.0%
!! AATGTAAGTATTATAAAATG+TGG + chr3_2:20474368-20474387 None:intergenic 15.0%
!! ATAAAAAGAGGTTTATAAAA+TGG - chr3_2:20474836-20474855 Msa0398590:exon 15.0%
!!! TTTTTTTTTTTTTTAAGGAG+TGG + chr3_2:20475378-20475397 None:intergenic 15.0%
!! TAACTAATAAAAGACTATAA+TGG + chr3_2:20475411-20475430 None:intergenic 15.0%
!!! ATAACCATAAGTTTATTTTT+TGG - chr3_2:20475848-20475867 Msa0398590:intron 15.0%
!! GACAAAAACAAAATATTATA+AGG - chr3_2:20476607-20476626 Msa0398590:CDS 15.0%
!! ACAAAGATAAAAAGAAATTA+AGG + chr3_2:20476656-20476675 None:intergenic 15.0%
!!! TATTTTAGAAACTATTCATA+TGG + chr3_2:20476689-20476708 None:intergenic 15.0%
!! TATTTGATTATAAATGTGAT+CGG + chr3_2:20477357-20477376 None:intergenic 15.0%
!! TTAATATAAATTACTTCGTT+TGG - chr3_2:20478008-20478027 Msa0398590:intron 15.0%
!!! ATAAATATAATGGAACTTAT+TGG - chr3_2:20479903-20479922 Msa0398590:CDS 15.0%
!! CCTTCTAATTTAATTAAATT+TGG + chr3_2:20479945-20479964 None:intergenic 15.0%
!! CCAAATTTAATTAAATTAGA+AGG - chr3_2:20479942-20479961 Msa0398590:CDS 15.0%
!! CCTTCTAATTTAAATAAATT+TGG + chr3_2:20480009-20480028 None:intergenic 15.0%
!! CCAAATTTATTTAAATTAGA+AGG - chr3_2:20480006-20480025 Msa0398590:exon 15.0%
!! ATTTCTTGCTTCAATTAATA+TGG - chr3_2:20474403-20474422 Msa0398590:intron 20.0%
!! CAATAACAATCTTAATTCTT+TGG - chr3_2:20474571-20474590 Msa0398590:three_prime_UTR 20.0%
!!! TAACAAAATGTTTTATTCAC+TGG + chr3_2:20475024-20475043 None:intergenic 20.0%
!! TTCACCAAAAAATAAACTTA+TGG + chr3_2:20475855-20475874 None:intergenic 20.0%
!! TTCAATGTAATTATATGTGT+CGG + chr3_2:20476448-20476467 None:intergenic 20.0%
!! TTATAAACTAGAACTCAAAT+AGG - chr3_2:20477225-20477244 Msa0398590:intron 20.0%
!! ATTTGATTATAAATGTGATC+GGG + chr3_2:20477356-20477375 None:intergenic 20.0%
!! AACTTTCCTATAAATATAAC+CGG - chr3_2:20477443-20477462 Msa0398590:intron 20.0%
!!! TAGAAGTTTAATTGTTTTGT+TGG - chr3_2:20477581-20477600 Msa0398590:CDS 20.0%
!!! AGAAGTTTAATTGTTTTGTT+GGG - chr3_2:20477582-20477601 Msa0398590:CDS 20.0%
!!! ACTTAGATTTTGTATAACTA+TGG - chr3_2:20477639-20477658 Msa0398590:CDS 20.0%
!! TTCATCTATGTAAATACTTA+TGG - chr3_2:20477840-20477859 Msa0398590:intron 20.0%
!! AATAATTACCAAATGATGAT+GGG + chr3_2:20477890-20477909 None:intergenic 20.0%
!! AAATAATTACCAAATGATGA+TGG + chr3_2:20477891-20477910 None:intergenic 20.0%
!! TTATAACTAGAAAATGTTCA+AGG + chr3_2:20477917-20477936 None:intergenic 20.0%
!!! TTTGAGAATTTTCAAAAAGT+AGG - chr3_2:20478039-20478058 Msa0398590:intron 20.0%
!! TGTTGTATATAAACTACATT+TGG - chr3_2:20478237-20478256 Msa0398590:CDS 20.0%
!! AAATTAGAATATGTTGTACT+TGG - chr3_2:20478635-20478654 Msa0398590:intron 20.0%
!! TGAAAATGTGAATATCAAAT+TGG - chr3_2:20479026-20479045 Msa0398590:intron 20.0%
!! CCAAATTAGAAAAGTTAATA+GGG + chr3_2:20479105-20479124 None:intergenic 20.0%
!!! TGAAACTTTTGAAAAGTTTA+GGG + chr3_2:20479174-20479193 None:intergenic 20.0%
!!! TTGAAACTTTTGAAAAGTTT+AGG + chr3_2:20479175-20479194 None:intergenic 20.0%
!!! TGTACAAGAGTTTTTTTTTT+GGG - chr3_2:20479699-20479718 Msa0398590:intron 20.0%
!!! TGTTGATGGTATAAATATAA+TGG - chr3_2:20479893-20479912 Msa0398590:CDS 20.0%
! TTCAATTAATATGGCATCTA+GGG - chr3_2:20474412-20474431 Msa0398590:intron 25.0%
!!! TGAAGTGGATTATGAATTTA+TGG - chr3_2:20474447-20474466 Msa0398590:intron 25.0%
!!! GAAGTGGATTATGAATTTAT+GGG - chr3_2:20474448-20474467 Msa0398590:intron 25.0%
! GATTATGAATTTATGGGTAA+TGG - chr3_2:20474454-20474473 Msa0398590:intron 25.0%
!! ATAAGGAAGATAATTAGCTT+TGG + chr3_2:20474597-20474616 None:intergenic 25.0%
! AAAGCTAATTATCTTCCTTA+TGG - chr3_2:20474596-20474615 Msa0398590:three_prime_UTR 25.0%
! AAGCTAATTATCTTCCTTAT+GGG - chr3_2:20474597-20474616 Msa0398590:three_prime_UTR 25.0%
!! TATTTACAGTCTGCTTTAAA+AGG - chr3_2:20474923-20474942 Msa0398590:CDS 25.0%
!!! ATTTACAGTCTGCTTTAAAA+GGG - chr3_2:20474924-20474943 Msa0398590:CDS 25.0%
!! CAAATGCATATTTTCTTAGT+CGG - chr3_2:20475177-20475196 Msa0398590:intron 25.0%
! AATATCTTAAAAACACTCGT+AGG - chr3_2:20475538-20475557 Msa0398590:intron 25.0%
! GTTCTTTAATTAAGAGCTAA+CGG - chr3_2:20475755-20475774 Msa0398590:intron 25.0%
! TTCTTTAATTAAGAGCTAAC+GGG - chr3_2:20475756-20475775 Msa0398590:intron 25.0%
! TTTCTCTATGCTAAATTTAG+TGG - chr3_2:20476218-20476237 Msa0398590:intron 25.0%
! TAGTCATGATTTATGAAACA+CGG - chr3_2:20476370-20476389 Msa0398590:intron 25.0%
! CGTCATATTGACAATTATAA+GGG + chr3_2:20476583-20476602 None:intergenic 25.0%
! ACGTCATATTGACAATTATA+AGG + chr3_2:20476584-20476603 None:intergenic 25.0%
! TTATAATTGTCAATATGACG+TGG - chr3_2:20476583-20476602 Msa0398590:CDS 25.0%
! AGTTCATTATTTCAACTTGT+AGG - chr3_2:20476708-20476727 Msa0398590:CDS 25.0%
! GTTCATTATTTCAACTTGTA+GGG - chr3_2:20476709-20476728 Msa0398590:CDS 25.0%
!!! AATGTGACTTTTTGATTCAA+TGG + chr3_2:20477096-20477115 None:intergenic 25.0%
! TCTAACATGCACAAATAAAA+TGG - chr3_2:20477130-20477149 Msa0398590:intron 25.0%
! CAATGAGATTAAACTTCATT+TGG + chr3_2:20477294-20477313 None:intergenic 25.0%
! TAATCAAATATTGCTCTATC+AGG - chr3_2:20477367-20477386 Msa0398590:intron 25.0%
! TATTAATATTATACTCCCTC+CGG + chr3_2:20477465-20477484 None:intergenic 25.0%
! GCAAACCAATTATTTAACAA+CGG - chr3_2:20477768-20477787 Msa0398590:intron 25.0%
! GTTGGAAGATAACAATATTT+AGG + chr3_2:20478105-20478124 None:intergenic 25.0%
!!! TTCTTTCTTTACCTTTTTTG+TGG - chr3_2:20478818-20478837 Msa0398590:intron 25.0%
!!! TCTTTCTTTACCTTTTTTGT+GGG - chr3_2:20478819-20478838 Msa0398590:intron 25.0%
! GATTAAGAATTGTTTCATTC+TGG - chr3_2:20478913-20478932 Msa0398590:intron 25.0%
!! CCCTATTAACTTTTCTAATT+TGG - chr3_2:20479102-20479121 Msa0398590:intron 25.0%
! GCCAAATTAGAAAAGTTAAT+AGG + chr3_2:20479106-20479125 None:intergenic 25.0%
!!! TTGTTTCTGTCTTAATTTTC+AGG - chr3_2:20479344-20479363 Msa0398590:intron 25.0%
!! ATAGGAATGAGTATCTATTT+TGG - chr3_2:20479453-20479472 Msa0398590:intron 25.0%
!! TAGGAATGAGTATCTATTTT+GGG - chr3_2:20479454-20479473 Msa0398590:intron 25.0%
! AAACTGTAATTGTGGTATTA+AGG - chr3_2:20479595-20479614 Msa0398590:intron 25.0%
!!! TGATGAGTTTTTTATGCTAA+AGG - chr3_2:20479676-20479695 Msa0398590:intron 25.0%
!!! GTGTACAAGAGTTTTTTTTT+TGG - chr3_2:20479698-20479717 Msa0398590:intron 25.0%
! CAAGAATCTAATATAGTGTT+TGG - chr3_2:20479737-20479756 Msa0398590:intron 25.0%
!! TGTTATGATTTTCTTGTTGA+TGG - chr3_2:20479879-20479898 Msa0398590:CDS 25.0%
!! AATATAATGGAACTTATTGG+TGG - chr3_2:20479906-20479925 Msa0398590:CDS 25.0%
! ATGAATAAATAAGATGTACG+AGG - chr3_2:20480090-20480109 Msa0398590:five_prime_UTR 25.0%
CTTCAATTAATATGGCATCT+AGG - chr3_2:20474411-20474430 Msa0398590:intron 30.0%
! TATGAATTTATGGGTAATGG+TGG - chr3_2:20474457-20474476 Msa0398590:intron 30.0%
! ATCAACAGTAGTTTTTCCAT+TGG + chr3_2:20474657-20474676 None:intergenic 30.0%
!! CCATCTTCTTTTGAGAAAAA+AGG + chr3_2:20474866-20474885 None:intergenic 30.0%
!!! CCTTTTTTCTCAAAAGAAGA+TGG - chr3_2:20474863-20474882 Msa0398590:CDS 30.0%
!! TTTTCCTTCTAAAAGTAGAC+TGG - chr3_2:20475252-20475271 Msa0398590:intron 30.0%
ATAGAGTGAAGTGTATAAGT+CGG - chr3_2:20475579-20475598 Msa0398590:intron 30.0%
AATTCCATGTGCTTGAAATT+GGG + chr3_2:20475686-20475705 None:intergenic 30.0%
CGTAATTTATGATAGTCATC+TGG - chr3_2:20475724-20475743 Msa0398590:intron 30.0%
! TTTTTACCCAAGATTTGTGA+TGG + chr3_2:20475819-20475838 None:intergenic 30.0%
TTTGGTGAACATAATTCAGT+TGG - chr3_2:20475866-20475885 Msa0398590:intron 30.0%
! TAGGAAAGTTTTGCTTTATC+AGG + chr3_2:20477433-20477452 None:intergenic 30.0%
TTTCCTATAAATATAACCGG+AGG - chr3_2:20477446-20477465 Msa0398590:intron 30.0%
TTCCTATAAATATAACCGGA+GGG - chr3_2:20477447-20477466 Msa0398590:intron 30.0%
! TTTTGTATAACTATGGAGCA+AGG - chr3_2:20477646-20477665 Msa0398590:CDS 30.0%
!! CAAGGAAAATGGCTTTATTT+GGG - chr3_2:20477664-20477683 Msa0398590:CDS 30.0%
!! AAAATGGCTTTATTTGGGAT+TGG - chr3_2:20477669-20477688 Msa0398590:CDS 30.0%
!! TTATTTGGGATTGGTCAAAT+AGG - chr3_2:20477678-20477697 Msa0398590:CDS 30.0%
!! CTGTTTTGAGCTAATTCATT+TGG + chr3_2:20477711-20477730 None:intergenic 30.0%
! ATTGATTCTTTCAACACAAG+TGG + chr3_2:20477745-20477764 None:intergenic 30.0%
TCAGTCCGTTGTTAAATAAT+TGG + chr3_2:20477776-20477795 None:intergenic 30.0%
ATAAACAACCCATCATCATT+TGG - chr3_2:20477879-20477898 Msa0398590:intron 30.0%
GGAAGATAACAATATTTAGG+TGG + chr3_2:20478102-20478121 None:intergenic 30.0%
TTGTAAATGACAAAACTGTG+AGG + chr3_2:20478187-20478206 None:intergenic 30.0%
TCATGTTGAATTGTGAAATG+TGG - chr3_2:20478213-20478232 Msa0398590:intron 30.0%
CATGTTGAATTGTGAAATGT+GGG - chr3_2:20478214-20478233 Msa0398590:intron 30.0%
AGTTTCTATGTAACTCAATC+AGG - chr3_2:20478307-20478326 Msa0398590:CDS 30.0%
ACGTAGATATAGATATGGAT+AGG - chr3_2:20478330-20478349 Msa0398590:CDS 30.0%
CGTAGATATAGATATGGATA+GGG - chr3_2:20478331-20478350 Msa0398590:CDS 30.0%
GTAGATATAGATATGGATAG+GGG - chr3_2:20478332-20478351 Msa0398590:CDS 30.0%
! GTATTTGAAGCATTCTTACT+TGG + chr3_2:20478537-20478556 None:intergenic 30.0%
! ACCTTGGTTCAATTGATTTA+GGG - chr3_2:20478690-20478709 Msa0398590:intron 30.0%
ATTAGCATTTGTTTCAGACT+GGG + chr3_2:20478789-20478808 None:intergenic 30.0%
TATTAGCATTTGTTTCAGAC+TGG + chr3_2:20478790-20478809 None:intergenic 30.0%
TAGTTAATGAGTTTCACCAA+AGG + chr3_2:20478970-20478989 None:intergenic 30.0%
TGTGTGATTCATCAAATCTA+TGG + chr3_2:20479077-20479096 None:intergenic 30.0%
!! TGTCTTAATTTTCAGGCATA+AGG - chr3_2:20479351-20479370 Msa0398590:intron 30.0%
!! GTCTTAATTTTCAGGCATAA+GGG - chr3_2:20479352-20479371 Msa0398590:intron 30.0%
ACTCATTCCTATTACTACAT+GGG + chr3_2:20479445-20479464 None:intergenic 30.0%
TACTCATTCCTATTACTACA+TGG + chr3_2:20479446-20479465 None:intergenic 30.0%
! TGATGATGAAACTGTAATTG+TGG - chr3_2:20479587-20479606 Msa0398590:intron 30.0%
TTGTGGTATTAAGGTTATTG+TGG - chr3_2:20479604-20479623 Msa0398590:intron 30.0%
! TTGTGGAACTTTTCTTTTGT+TGG - chr3_2:20479621-20479640 Msa0398590:intron 30.0%
!! TTGTTGGTGATTGTTTATTG+TGG - chr3_2:20479637-20479656 Msa0398590:intron 30.0%
!! TGTTGGTGATTGTTTATTGT+GGG - chr3_2:20479638-20479657 Msa0398590:intron 30.0%
!!! ACAAGAGTTTTTTTTTTGGG+TGG - chr3_2:20479702-20479721 Msa0398590:intron 30.0%
!!! TTTTTTTTTGGGTGGTGTAA+AGG - chr3_2:20479710-20479729 Msa0398590:intron 30.0%
!! AAACTACACTTGATGGTTTT+TGG + chr3_2:20479785-20479804 None:intergenic 30.0%
TTTCATGAAACTACACTTGA+TGG + chr3_2:20479792-20479811 None:intergenic 30.0%
ATATAGTGTGTTTGTTTCCA+CGG + chr3_2:20479838-20479857 None:intergenic 30.0%
ATTTATAGTCAACAGACTAG+TGG + chr3_2:20480058-20480077 None:intergenic 30.0%
GTAAGTGAATGAGTGGATAT+GGG + chr3_2:20474336-20474355 None:intergenic 35.0%
TGTAAGTGAATGAGTGGATA+TGG + chr3_2:20474337-20474356 None:intergenic 35.0%
!! GTACCTTGCTACTTCATTTT+TGG - chr3_2:20474524-20474543 Msa0398590:three_prime_UTR 35.0%
TCACCAAAAATGAAGTAGCA+AGG + chr3_2:20474530-20474549 None:intergenic 35.0%
!!! CTTCATTTTTGGTGACTCTT+TGG - chr3_2:20474535-20474554 Msa0398590:three_prime_UTR 35.0%
CCATTAAAGTCAATCCCATA+AGG + chr3_2:20474614-20474633 None:intergenic 35.0%
! CCTTATGGGATTGACTTTAA+TGG - chr3_2:20474611-20474630 Msa0398590:three_prime_UTR 35.0%
! TATGGGATTGACTTTAATGG+TGG - chr3_2:20474614-20474633 Msa0398590:three_prime_UTR 35.0%
AAAACTACTGTTGATGTCGT+TGG - chr3_2:20474662-20474681 Msa0398590:three_prime_UTR 35.0%
GAGACAAAATAAACAGTCGT+TGG + chr3_2:20475624-20475643 None:intergenic 35.0%
ATTCCATGTGCTTGAAATTG+GGG + chr3_2:20475685-20475704 None:intergenic 35.0%
CAATTCCATGTGCTTGAAAT+TGG + chr3_2:20475687-20475706 None:intergenic 35.0%
! TAATTAAGAGCTAACGGGTA+AGG - chr3_2:20475761-20475780 Msa0398590:intron 35.0%
TTCCAATCACAATCATGTTG+TGG - chr3_2:20475791-20475810 Msa0398590:intron 35.0%
! AAATTTGACAGCTGAGCTTT+TGG - chr3_2:20476066-20476085 Msa0398590:intron 35.0%
! AATTTGACAGCTGAGCTTTT+GGG - chr3_2:20476067-20476086 Msa0398590:intron 35.0%
TTTGAGTATTTCTTGGTCTC+TGG + chr3_2:20476125-20476144 None:intergenic 35.0%
AGAGACCAAGAAATACTCAA+AGG - chr3_2:20476124-20476143 Msa0398590:intron 35.0%
TGACTCCTTTGAGTATTTCT+TGG + chr3_2:20476132-20476151 None:intergenic 35.0%
CAATCATGACCTATGAAACA+CGG + chr3_2:20476538-20476557 None:intergenic 35.0%
!!! GGAGATCGTATTAGTTTTAG+TGG - chr3_2:20476730-20476749 Msa0398590:CDS 35.0%
AGCAAATGCATCTATTCCAT+TGG - chr3_2:20476832-20476851 Msa0398590:intron 35.0%
ATGCATCTATTCCATTGGAT+TGG - chr3_2:20476837-20476856 Msa0398590:intron 35.0%
TGCATCTATTCCATTGGATT+GGG - chr3_2:20476838-20476857 Msa0398590:intron 35.0%
CAGGCATGAAATAGTTGTTA+AGG + chr3_2:20476876-20476895 None:intergenic 35.0%
GATTATAAATGTGATCGGGA+TGG + chr3_2:20477352-20477371 None:intergenic 35.0%
TAACTATGGAGCAAGGAAAA+TGG - chr3_2:20477653-20477672 Msa0398590:CDS 35.0%
!! GCAAGGAAAATGGCTTTATT+TGG - chr3_2:20477663-20477682 Msa0398590:CDS 35.0%
TCAACTCAACAATGAGCTTT+CGG - chr3_2:20477809-20477828 Msa0398590:intron 35.0%
! TGATAGTGTGTTTGTTTGCA+TGG - chr3_2:20477960-20477979 Msa0398590:intron 35.0%
GATAGTGTGTTTGTTTGCAT+GGG - chr3_2:20477961-20477980 Msa0398590:intron 35.0%
ATAGTGTGTTTGTTTGCATG+GGG - chr3_2:20477962-20477981 Msa0398590:intron 35.0%
! GTTTGCATGGGGAAATTTTA+CGG - chr3_2:20477973-20477992 Msa0398590:intron 35.0%
! TTTGCATGGGGAAATTTTAC+GGG - chr3_2:20477974-20477993 Msa0398590:intron 35.0%
TCAGGACGTAGATATAGATA+TGG - chr3_2:20478325-20478344 Msa0398590:CDS 35.0%
GATCAATTGACGACTCTATT+GGG + chr3_2:20478401-20478420 None:intergenic 35.0%
TTGAGATATTCGGTCTATGA+AGG - chr3_2:20478430-20478449 Msa0398590:intron 35.0%
AAGAATGCTTCAAATACGCA+AGG - chr3_2:20478540-20478559 Msa0398590:intron 35.0%
! GACCTTGGTTCAATTGATTT+AGG - chr3_2:20478689-20478708 Msa0398590:intron 35.0%
ACCCTAAATCAATTGAACCA+AGG + chr3_2:20478694-20478713 None:intergenic 35.0%
ATACATGTGTTAGCGTCTTA+AGG - chr3_2:20478732-20478751 Msa0398590:intron 35.0%
!!! TTTTTTGTGGGTTAACCCTT+CGG - chr3_2:20478831-20478850 Msa0398590:intron 35.0%
TAGTTCAAAGTTCAGATGTG+AGG - chr3_2:20478878-20478897 Msa0398590:intron 35.0%
TCACCAAAGGACAAACTATT+CGG + chr3_2:20478957-20478976 None:intergenic 35.0%
GCATAAGGGTTACAAATGAA+GGG - chr3_2:20479366-20479385 Msa0398590:intron 35.0%
TGTGGAATAGGAAGAAACAA+TGG - chr3_2:20479392-20479411 Msa0398590:intron 35.0%
ATTACTACATGGGGTTTGAA+GGG + chr3_2:20479435-20479454 None:intergenic 35.0%
TATTACTACATGGGGTTTGA+AGG + chr3_2:20479436-20479455 None:intergenic 35.0%
TTCAAACCCCATGTAGTAAT+AGG - chr3_2:20479435-20479454 Msa0398590:intron 35.0%
CTCATTCCTATTACTACATG+GGG + chr3_2:20479444-20479463 None:intergenic 35.0%
AATTATAGTGTTGCCAACCT+CGG + chr3_2:20479495-20479514 None:intergenic 35.0%
TTGGCAACACTATAATTGGT+AGG - chr3_2:20479498-20479517 Msa0398590:intron 35.0%
GCTAAGCGATTAATGTCAAT+AGG + chr3_2:20479560-20479579 None:intergenic 35.0%
!!! GGTTTTTGGTTTTCCTTCTT+TGG + chr3_2:20479771-20479790 None:intergenic 35.0%
! AACAGACTAGTGGACAAAAA+AGG + chr3_2:20480048-20480067 None:intergenic 35.0%
TGTGTGTGTAAGTGAATGAG+TGG + chr3_2:20474343-20474362 None:intergenic 40.0%
GGGAAGTCAATATTGTGAAG+TGG - chr3_2:20474432-20474451 Msa0398590:intron 40.0%
! GAATTTATGGGTAATGGTGG+TGG - chr3_2:20474460-20474479 Msa0398590:intron 40.0%
TATGGGTTTGTGGAGTAGTA+AGG - chr3_2:20474484-20474503 Msa0398590:three_prime_UTR 40.0%
! ATGAAGTAGCAAGGTACTTG+AGG + chr3_2:20474521-20474540 None:intergenic 40.0%
!! CATGCCAGTCTACTTTTAGA+AGG + chr3_2:20475259-20475278 None:intergenic 40.0%
AGCCACAACATGATTGTGAT+TGG + chr3_2:20475796-20475815 None:intergenic 40.0%
GCTGGAATTAGAGAAGAAAC+TGG - chr3_2:20476169-20476188 Msa0398590:intron 40.0%
TGTCTGTATCCGTGTTTCAT+AGG - chr3_2:20476526-20476545 Msa0398590:intron 40.0%
TCCAAGCAAATTTACCACCT+GGG + chr3_2:20476785-20476804 None:intergenic 40.0%
! GGTAAATTTGCTTGGAGATG+AGG - chr3_2:20476789-20476808 Msa0398590:intron 40.0%
ATCATTGCTACCCAATCCAA+TGG + chr3_2:20476851-20476870 None:intergenic 40.0%
AGAACATCAGCATACTGTTG+TGG + chr3_2:20476925-20476944 None:intergenic 40.0%
AAGCATATGCTCAACAACTC+AGG - chr3_2:20476950-20476969 Msa0398590:intron 40.0%
AGCATATGCTCAACAACTCA+GGG - chr3_2:20476951-20476970 Msa0398590:intron 40.0%
CTCCCTCCGGTTATATTTAT+AGG + chr3_2:20477452-20477471 None:intergenic 40.0%
TTAGCTCAAAACAGTCCAGA+TGG - chr3_2:20477717-20477736 Msa0398590:intron 40.0%
! TTGCATGGGGAAATTTTACG+GGG - chr3_2:20477975-20477994 Msa0398590:intron 40.0%
TAGTGTGTCATACTTGAGGT+TGG + chr3_2:20478123-20478142 None:intergenic 40.0%
AACGTAGTGTGTCATACTTG+AGG + chr3_2:20478127-20478146 None:intergenic 40.0%
TCTCCCTTAGTCTCTACTAA+GGG + chr3_2:20478362-20478381 None:intergenic 40.0%
ATCTCCCTTAGTCTCTACTA+AGG + chr3_2:20478363-20478382 None:intergenic 40.0%
! GAGACTAAGGGAGATTTTGT+AGG - chr3_2:20478368-20478387 Msa0398590:intron 40.0%
GGATCAATTGACGACTCTAT+TGG + chr3_2:20478402-20478421 None:intergenic 40.0%
CCTCAAGGACTTGAGATATT+CGG - chr3_2:20478420-20478439 Msa0398590:intron 40.0%
! TCAGTAGCTTCCTTCTTTTC+CGG - chr3_2:20478483-20478502 Msa0398590:intron 40.0%
AAGCATTCTTACTTGGTCGT+CGG + chr3_2:20478530-20478549 None:intergenic 40.0%
! GCTAATTGATGGTCTCTTCT+AGG + chr3_2:20478589-20478608 None:intergenic 40.0%
TAGAGGACAAGGCTAATTGA+TGG + chr3_2:20478600-20478619 None:intergenic 40.0%
TTACTCACTAGAGTCACTAG+AGG + chr3_2:20478617-20478636 None:intergenic 40.0%
CAAATCAGCTTATGTGACCT+TGG - chr3_2:20478674-20478693 Msa0398590:intron 40.0%
ATTTGTTTCAGACTGGGTCA+AGG + chr3_2:20478783-20478802 None:intergenic 40.0%
GAAGGGTTAACCCACAAAAA+AGG + chr3_2:20478832-20478851 None:intergenic 40.0%
CACCAAAGGACAAACTATTC+GGG + chr3_2:20478956-20478975 None:intergenic 40.0%
GGCATAAGGGTTACAAATGA+AGG - chr3_2:20479365-20479384 Msa0398590:intron 40.0%
!! GTTACAAATGAAGGGTGTTG+TGG - chr3_2:20479374-20479393 Msa0398590:intron 40.0%
!! AATGAAGGGTGTTGTGGAAT+AGG - chr3_2:20479380-20479399 Msa0398590:intron 40.0%
TTACTACATGGGGTTTGAAG+GGG + chr3_2:20479434-20479453 None:intergenic 40.0%
GAGGTTGGCAACACTATAAT+TGG - chr3_2:20479494-20479513 Msa0398590:intron 40.0%
TTTGGATCCACATCCAAAGA+AGG - chr3_2:20479755-20479774 Msa0398590:CDS 40.0%
! TGGTTTTCCTTCTTTGGATG+TGG + chr3_2:20479765-20479784 None:intergenic 40.0%
!! ATGGGTAATGGTGGTGGTTA+TGG - chr3_2:20474466-20474485 Msa0398590:intron 45.0%
!! TGGGTAATGGTGGTGGTTAT+GGG - chr3_2:20474467-20474486 Msa0398590:intron 45.0%
GGTGACTCTTTGGTAGATGA+TGG - chr3_2:20474545-20474564 Msa0398590:three_prime_UTR 45.0%
GACTTTAATGGTGGTCCAAC+TGG - chr3_2:20474623-20474642 Msa0398590:three_prime_UTR 45.0%
TTAATGGTGGTCCAACTGGA+AGG - chr3_2:20474627-20474646 Msa0398590:three_prime_UTR 45.0%
CATGTGCTTGAAATTGGGGT+AGG + chr3_2:20475681-20475700 None:intergenic 45.0%
CTACCCCAATTTCAAGCACA+TGG - chr3_2:20475679-20475698 Msa0398590:intron 45.0%
TGTGGCTCCATCACAAATCT+TGG - chr3_2:20475809-20475828 Msa0398590:intron 45.0%
GTGGCTCCATCACAAATCTT+GGG - chr3_2:20475810-20475829 Msa0398590:intron 45.0%
GACCTCAGTCAATATGCTTC+TGG - chr3_2:20475944-20475963 Msa0398590:intron 45.0%
! GTCCAGAAGCATATTGACTG+AGG + chr3_2:20475949-20475968 None:intergenic 45.0%
!!! AGCTGAGCTTTTGGGATTTG+AGG - chr3_2:20476075-20476094 Msa0398590:intron 45.0%
!!! GCTGAGCTTTTGGGATTTGA+GGG - chr3_2:20476076-20476095 Msa0398590:intron 45.0%
TGGTCTCTGGCTGTTGAATA+GGG + chr3_2:20476112-20476131 None:intergenic 45.0%
TTGGTCTCTGGCTGTTGAAT+AGG + chr3_2:20476113-20476132 None:intergenic 45.0%
AATTATGCTTCTGCTGCTGC+TGG - chr3_2:20476151-20476170 Msa0398590:intron 45.0%
TATGAAACACGGACACTCCT+CGG - chr3_2:20476381-20476400 Msa0398590:intron 45.0%
!! ATATGTGTCGGTGTCGAACA+CGG + chr3_2:20476436-20476455 None:intergenic 45.0%
! TCCCAGGTGGTAAATTTGCT+TGG - chr3_2:20476781-20476800 Msa0398590:intron 45.0%
CTCCAAGCAAATTTACCACC+TGG + chr3_2:20476786-20476805 None:intergenic 45.0%
TTCATGCCTGCATATCCTAG+TGG - chr3_2:20476886-20476905 Msa0398590:intron 45.0%
TGTCTACCACTAGGATATGC+AGG + chr3_2:20476895-20476914 None:intergenic 45.0%
GGTGTAAACTGTCTACCACT+AGG + chr3_2:20476904-20476923 None:intergenic 45.0%
TCAACACAAGTGGTACCATC+TGG + chr3_2:20477735-20477754 None:intergenic 45.0%
TCACTCTCAACGACTCAAAG+TGG + chr3_2:20478162-20478181 None:intergenic 45.0%
TTGCCCCTTAGTAGAGACTA+AGG - chr3_2:20478355-20478374 Msa0398590:intron 45.0%
TGCCCCTTAGTAGAGACTAA+GGG - chr3_2:20478356-20478375 Msa0398590:intron 45.0%
CTCCCTTAGTCTCTACTAAG+GGG + chr3_2:20478361-20478380 None:intergenic 45.0%
TTGACGACTCTATTGGGAAG+CGG + chr3_2:20478395-20478414 None:intergenic 45.0%
GAGTCGTCAATTGATCCTCA+AGG - chr3_2:20478405-20478424 Msa0398590:intron 45.0%
CCGAATATCTCAAGTCCTTG+AGG + chr3_2:20478423-20478442 None:intergenic 45.0%
! TAGCTTCCTTCTTTTCCGGA+GGG - chr3_2:20478487-20478506 Msa0398590:intron 45.0%
ACTAGAGTCACTAGAGGACA+AGG + chr3_2:20478611-20478630 None:intergenic 45.0%
GTCAAGGTCCATTCACTCAA+CGG + chr3_2:20478767-20478786 None:intergenic 45.0%
! TTAACCCTTCGGTGGTTCTA+GGG - chr3_2:20478842-20478861 Msa0398590:intron 45.0%
! TTTTCCCTAGAACCACCGAA+GGG + chr3_2:20478849-20478868 None:intergenic 45.0%
!! TTCGGTGGTTCTAGGGAAAA+GGG - chr3_2:20478849-20478868 Msa0398590:intron 45.0%
! CTCCCGAATAGTTTGTCCTT+TGG - chr3_2:20478951-20478970 Msa0398590:intron 45.0%
!! TGGTGGTGGTTATGGGTTTG+TGG - chr3_2:20474474-20474493 Msa0398590:three_prime_UTR 50.0%
CCATTGGAGAACCTTCCAGT+TGG + chr3_2:20474641-20474660 None:intergenic 50.0%
CCAACTGGAAGGTTCTCCAA+TGG - chr3_2:20474638-20474657 Msa0398590:three_prime_UTR 50.0%
GGGTAGGCACACAACTAATG+TGG + chr3_2:20475665-20475684 None:intergenic 50.0%
CACGGCACATGTTCAACATC+AGG + chr3_2:20476418-20476437 None:intergenic 50.0%
GTCGATGTCTGTGTCGTATC+CGG - chr3_2:20476497-20476516 Msa0398590:intron 50.0%
ACGGATACAGACACAGACAC+CGG + chr3_2:20476519-20476538 None:intergenic 50.0%
CTACCAAAAGACAGTGTCCC+AGG - chr3_2:20476765-20476784 Msa0398590:CDS 50.0%
TGACGACTCTATTGGGAAGC+GGG + chr3_2:20478394-20478413 None:intergenic 50.0%
! GTAGCTTCCTTCTTTTCCGG+AGG - chr3_2:20478486-20478505 Msa0398590:intron 50.0%
! AGCTTCCTTCTTTTCCGGAG+GGG - chr3_2:20478488-20478507 Msa0398590:intron 50.0%
ATACACCCCTCCGGAAAAGA+AGG + chr3_2:20478496-20478515 None:intergenic 50.0%
TGTTTGCAGATACACCCCTC+CGG + chr3_2:20478505-20478524 None:intergenic 50.0%
! TTTGTGGGTTAACCCTTCGG+TGG - chr3_2:20478834-20478853 Msa0398590:intron 50.0%
GTTAACCCTTCGGTGGTTCT+AGG - chr3_2:20478841-20478860 Msa0398590:intron 50.0%
! CTTTTCCCTAGAACCACCGA+AGG + chr3_2:20478850-20478869 None:intergenic 50.0%
!! CTTCGGTGGTTCTAGGGAAA+AGG - chr3_2:20478848-20478867 Msa0398590:intron 50.0%
!! GGTTCTAGGGAAAAGGGCTT+TGG - chr3_2:20478855-20478874 Msa0398590:intron 50.0%
TAGTGTTGCCAACCTCGGTT+GGG + chr3_2:20479490-20479509 None:intergenic 50.0%
ATAGTGTTGCCAACCTCGGT+TGG + chr3_2:20479491-20479510 None:intergenic 50.0%
ATGATGCAATCGTGTCACCG+TGG - chr3_2:20479818-20479837 Msa0398590:CDS 50.0%
ACACGGACACTCCTCGGATT+AGG - chr3_2:20476387-20476406 Msa0398590:intron 55.0%
ATCAGGACACGCCTAATCCG+AGG + chr3_2:20476401-20476420 None:intergenic 55.0%
! CCACCTGGGACACTGTCTTT+TGG + chr3_2:20476771-20476790 None:intergenic 55.0%
CCAAAAGACAGTGTCCCAGG+TGG - chr3_2:20476768-20476787 Msa0398590:CDS 55.0%
GGAAGCTACTGAGCGAAGTC+AGG + chr3_2:20478475-20478494 None:intergenic 55.0%
GTCCATTCACTCAACGGAGC+GGG + chr3_2:20478761-20478780 None:intergenic 55.0%
GGTCCATTCACTCAACGGAG+CGG + chr3_2:20478762-20478781 None:intergenic 55.0%
GGATGCATTTCACCCAACCG+AGG - chr3_2:20479475-20479494 Msa0398590:intron 55.0%
GCATTTCACCCAACCGAGGT+TGG - chr3_2:20479479-20479498 Msa0398590:intron 55.0%
GACCCGCTCCGTTGAGTGAA+TGG - chr3_2:20478756-20478775 Msa0398590:intron 60.0%
Chromosome Type Strat End Strand Name
chr3_2 gene 20474310 20480123 20474310 ID=Msa0398590;Name=Msa0398590
chr3_2 mRNA 20474310 20480123 20474310 ID=Msa0398590-mRNA-1;Parent=Msa0398590;Name=Msa0398590-mRNA-1;_AED=0.05;_eAED=0.05;_QI=112|1|1|1|0.8|0.66|6|470|369
chr3_2 exon 20474310 20474405 20474310 ID=Msa0398590-mRNA-1:exon:4443;Parent=Msa0398590-mRNA-1
chr3_2 exon 20474470 20475067 20474470 ID=Msa0398590-mRNA-1:exon:4442;Parent=Msa0398590-mRNA-1
chr3_2 exon 20476533 20476788 20476533 ID=Msa0398590-mRNA-1:exon:4441;Parent=Msa0398590-mRNA-1
chr3_2 exon 20477461 20477703 20477461 ID=Msa0398590-mRNA-1:exon:4440;Parent=Msa0398590-mRNA-1
chr3_2 exon 20478232 20478356 20478232 ID=Msa0398590-mRNA-1:exon:4439;Parent=Msa0398590-mRNA-1
chr3_2 exon 20479750 20480123 20479750 ID=Msa0398590-mRNA-1:exon:4438;Parent=Msa0398590-mRNA-1
chr3_2 five_prime_UTR 20480012 20480123 20480012 ID=Msa0398590-mRNA-1:five_prime_utr;Parent=Msa0398590-mRNA-1
chr3_2 CDS 20479750 20480011 20479750 ID=Msa0398590-mRNA-1:cds;Parent=Msa0398590-mRNA-1
chr3_2 CDS 20478232 20478356 20478232 ID=Msa0398590-mRNA-1:cds;Parent=Msa0398590-mRNA-1
chr3_2 CDS 20477461 20477703 20477461 ID=Msa0398590-mRNA-1:cds;Parent=Msa0398590-mRNA-1
chr3_2 CDS 20476533 20476788 20476533 ID=Msa0398590-mRNA-1:cds;Parent=Msa0398590-mRNA-1
chr3_2 CDS 20474844 20475067 20474844 ID=Msa0398590-mRNA-1:cds;Parent=Msa0398590-mRNA-1
chr3_2 three_prime_UTR 20474470 20474843 20474470 ID=Msa0398590-mRNA-1:three_prime_utr;Parent=Msa0398590-mRNA-1
chr3_2 three_prime_UTR 20474310 20474405 20474310 ID=Msa0398590-mRNA-1:three_prime_utr;Parent=Msa0398590-mRNA-1
Gene Sequence

>Msa0398590

ATGGCATCTAGGGAAGTCAATATTGTGAAGTGGATTATGAATTTATGGGTAATGGTGGTGGTTATGGGTTTGTGGAGTAGTAAGGTTGAAGCTGATCCTCAAGTACCTTGCTACTTCATTTTTGGTGACTCTTTGGTAGATGATGGAAACAATAACAATCTTAATTCTTTGGCCAAAGCTAATTATCTTCCTTATGGGATTGACTTTAATGGTGGTCCAACTGGAAGGTTCTCCAATGGAAAAACTACTGTTGATGTCGTTGCTGAGCTTTTGGGATTTGAGGGCTACATATCTCCCTATTCAACAGCCAGAGACCAAGAAATACTCAAAGGAGTCAATTATGCTTCTGCTGCTGCTGGAATTAGAGAAGAAACTGGACAACAACTAGGAGATCGTATTAGTTTTAGTGGACAAGTACAAAACTACCAAAAGACAGTGTCCCAGGTGGTAAATTTGCTTGGAGATGAGGATACAGCTTCAAATTATCTTAGCAAATGCATCTATTCCATTGGATTGGGTAGCAATGATTACCTTAACAACTATTTCATGCCTGCATATCCTAGTGGTAGACAGTTTACACCACAACAGTATGCTGATGTTCTTATTCAAGCATATGCTCAACAACTCAGGATTTTGTATAACTATGGAGCAAGGAAAATGGCTTTATTTGGGATTGGTCAAATAGGTTGCAGTCCAAATGAATTAGCTCAAAACAGTCCAGATGGTACCACTTGTGTTGAAAGAATCAATTCTGCAAACCAATTATTTAACAACGGACTGAAATCTCTTGTTAATCAACTCAACAATGAGCTTTCGGATGCAAGATTCATCTATGTAAATACTTATGGTATCTTTCAAGACATCATAAACAACCCATCATCATTTGGCATAAGGGTTACAAATGAAGGGTGTTGTGGAATAGGAAGAAACAATGGTCAAATTACATGTTTGCCCCTTCAAACCCCATGTAGTAATAGGAATGAGTATCTATTTTGGGATGCATTTCACCCAACCGAGGTTGGCAACACTATAATTGGTAGGAGAGCTTACAATGCTCAATCTGAATCAGATGCTTATCCTATTGACATTAATCGCTTAGCTCAAATATGA
Protein sequence

>Msa0398590

MASREVNIVKWIMNLWVMVVVMGLWSSKVEADPQVPCYFIFGDSLVDDGNNNNLNSLAKANYLPYGIDFNGGPTGRFSNGKTTVDVVAELLGFEGYISPYSTARDQEILKGVNYASAAAGIREETGQQLGDRISFSGQVQNYQKTVSQVVNLLGDEDTASNYLSKCIYSIGLGSNDYLNNYFMPAYPSGRQFTPQQYADVLIQAYAQQLRILYNYGARKMALFGIGQIGCSPNELAQNSPDGTTCVERINSANQLFNNGLKSLVNQLNNELSDARFIYVNTYGIFQDIINNPSSFGIRVTNEGCCGIGRNNGQITCLPLQTPCSNRNEYLFWDAFHPTEVGNTIIGRRAYNAQSESDAYPIDINRLAQI*