AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1336350


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1336350 MtrunA17_Chr5g0422461 92.032 251 5 2 1 236 1 251 5.43e-164 465
Msa1336350 MtrunA17_Chr7g0245041 35.593 177 83 6 91 236 86 262 9.03e-23 96.3
Msa1336350 MtrunA17_Chr8g0334531 37.017 181 77 6 92 236 104 283 6.53e-19 85.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1336350 AT1G68830.1 77.157 197 39 2 44 236 44 238 1.99e-109 326
Msa1336350 AT5G01920.1 35.465 172 77 4 99 236 96 267 2.34e-21 92.4
Msa1336350 AT5G01920.2 35.465 172 77 4 99 236 96 267 2.34e-21 92.4

Find 125 sgRNAs with CRISPR-Local

Find 305 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTCATCCATACTCTCATTTA+AGG 0.110339 tig0001052:+19997 None:intergenic
TTGGTGCTTTGTCTTATCTT+TGG 0.201448 tig0001052:-24016 Msa1336350:CDS
CCTGGTGTTGTTCTTGCTTT+TGG 0.208005 tig0001052:-24035 Msa1336350:CDS
CTCCTGAATATTGGCTTATA+TGG 0.234852 tig0001052:-22404 Msa1336350:CDS
TGGTGCTTTGTCTTATCTTT+GGG 0.266282 tig0001052:-24015 Msa1336350:CDS
CGAGCAACACAACAGGATTA+TGG 0.267381 tig0001052:-20621 Msa1336350:three_prime_UTR
AGAGTTTGATTCTAAGTCTT+TGG 0.272209 tig0001052:+24258 None:intergenic
GCCTTTGCCTTGCTTTATAT+CGG 0.279262 tig0001052:+20736 None:intergenic
TTGTGCACCAGCCTTCTTCT+TGG 0.291467 tig0001052:+20069 None:intergenic
AATATGGCGCTGTAGAAATT+TGG 0.295348 tig0001052:-22632 Msa1336350:CDS
ATTGACGGTTGAATTGTATA+AGG 0.298216 tig0001052:+20892 None:intergenic
TTGAAGAAGGCGACTGAATA+TGG 0.307818 tig0001052:-22648 Msa1336350:CDS
CTTTGTGACTCCAATTCCTT+TGG 0.309079 tig0001052:+24322 None:intergenic
CAGGTCGAAACATTGATTCT+TGG 0.311234 tig0001052:-22021 Msa1336350:three_prime_UTR
TACAACTTTCATTCCTCTCT+TGG 0.323203 tig0001052:+19932 None:intergenic
AAGAGACTACCAACATTATA+TGG 0.329901 tig0001052:+22330 None:intergenic
CATTCCTAAAGAGTTTCTTT+TGG 0.331479 tig0001052:-21692 Msa1336350:three_prime_UTR
GGATCCAAAAGAAACTCTTT+AGG 0.332998 tig0001052:+21688 None:intergenic
TGTGCACCAGCCTTCTTCTT+GGG 0.348907 tig0001052:+20070 None:intergenic
CAAGTGGATTATTCAGCTTA+TGG 0.349059 tig0001052:-20589 Msa1336350:three_prime_UTR
ACCATCACCGGGGCTGATAC+TGG 0.358890 tig0001052:+22055 None:intergenic
CAAAGAAGACTCCTGAATAT+TGG 0.362523 tig0001052:-22413 Msa1336350:CDS
CTGCACTCTCTCCAGTCTTA+TGG 0.363671 tig0001052:-21440 Msa1336350:three_prime_UTR
AAATTTAAATAGAACTTTCT+CGG 0.365198 tig0001052:+22114 None:intergenic
TCAGATTCTACTTACTTCAT+AGG 0.367116 tig0001052:+19764 None:intergenic
ATTCAGCTTATGGCAAAATC+AGG 0.382255 tig0001052:-20579 Msa1336350:three_prime_UTR
ACATTCAAAATAATTGATCT+TGG 0.382791 tig0001052:-21748 Msa1336350:three_prime_UTR
CTCCATATAAGCCAATATTC+AGG 0.386303 tig0001052:+22402 None:intergenic
TTGGATTTAGATGGCGGAAT+AGG 0.392942 tig0001052:-20783 Msa1336350:three_prime_UTR
ACTGTTGCAACCAAAGGAAT+TGG 0.403712 tig0001052:-24332 Msa1336350:CDS
TTTGAGCTGTTGGATTTAGA+TGG 0.405059 tig0001052:-20792 Msa1336350:three_prime_UTR
AAGCCTTCTTTGTCAAAGTA+AGG 0.405199 tig0001052:+20687 None:intergenic
CTTTGACAAAGAAGGCTTGT+TGG 0.405734 tig0001052:-20682 Msa1336350:three_prime_UTR
ACAAGATTTGCCAAAGGGAT+TGG 0.407482 tig0001052:-21992 Msa1336350:three_prime_UTR
GCTACACCTGGTGTTGCTCC+TGG 0.415742 tig0001052:-23993 Msa1336350:CDS
GTTGCACGTCAAAATATTAC+AGG 0.416786 tig0001052:+19733 None:intergenic
CATCCTTACTTTGACAAAGA+AGG 0.421240 tig0001052:-20690 Msa1336350:three_prime_UTR
ACAACTTTCATTCCTCTCTT+GGG 0.423424 tig0001052:+19933 None:intergenic
GGAGAGAGTGCAGTTGCAAC+TGG 0.425506 tig0001052:+21450 None:intergenic
TCTTATCTTTGGGCTACACC+TGG 0.433977 tig0001052:-24005 Msa1336350:CDS
ATCACCACAAAAGCCATTCA+TGG 0.434279 tig0001052:-24194 Msa1336350:intron
TAGGAGAGGCTTTGAGCTGT+TGG 0.438205 tig0001052:-20802 Msa1336350:three_prime_UTR
AAGTCTTTGGCCAAGGAAGA+TGG 0.440935 tig0001052:+24271 None:intergenic
TGGCTTATATGGAGGTTTGA+AGG 0.443769 tig0001052:-22393 Msa1336350:CDS
TGGTTATTTATGATCTCTAA+AGG 0.446721 tig0001052:-22081 Msa1336350:three_prime_UTR
AGTCACACCTCTTTAATTGA+CGG 0.447260 tig0001052:+20877 None:intergenic
GGCTTGAATGTTACTGTCCC+TGG 0.447608 tig0001052:-24053 Msa1336350:CDS
GGCTTATATGGAGGTTTGAA+GGG 0.452837 tig0001052:-22392 Msa1336350:CDS
ATTTAGATGGCGGAATAGGA+TGG 0.466045 tig0001052:-20779 Msa1336350:three_prime_UTR
CTCAACTGGTATTGTGCATA+GGG 0.466971 tig0001052:-21905 Msa1336350:three_prime_UTR
GCCAGTATCAGCCCCGGTGA+TGG 0.467618 tig0001052:-22056 Msa1336350:three_prime_UTR
CTATTATCAGAGCGTAAGCC+AGG 0.468233 tig0001052:+20915 None:intergenic
TTAGACGGTCTTCACTCAAC+TGG 0.479359 tig0001052:-21919 Msa1336350:three_prime_UTR
GGCAAAATCAGGAACAGAAA+AGG 0.483650 tig0001052:-20568 Msa1336350:three_prime_UTR
AAAGCATTTGGTGGAGGAGA+TGG 0.488211 tig0001052:-19958 Msa1336350:three_prime_UTR
GAATCGTATTTAGTATGCTA+TGG 0.488563 tig0001052:-19787 Msa1336350:three_prime_UTR
CTTGCACTGCATGGTGGTGG+TGG 0.491350 tig0001052:+24221 None:intergenic
AATCCATTCAGCACCATGAA+TGG 0.498174 tig0001052:+24181 None:intergenic
CTCGATGTGGCGCTGAACTT+AGG 0.499449 tig0001052:-20821 Msa1336350:three_prime_UTR
AATAATAATACCTTTGATGA+GGG 0.500325 tig0001052:+23042 None:intergenic
GGAAATTGTGCCCAAGAAGA+AGG 0.504841 tig0001052:-20080 Msa1336350:three_prime_UTR
CTGAATATTGGCTTATATGG+AGG 0.508004 tig0001052:-22401 Msa1336350:CDS
CCAAAAGCAAGAACAACACC+AGG 0.508205 tig0001052:+24035 None:intergenic
ACTCAACTGGTATTGTGCAT+AGG 0.510063 tig0001052:-21906 Msa1336350:three_prime_UTR
TGGTCTAATATTCCTCCAAA+TGG 0.512216 tig0001052:-21277 Msa1336350:intron
AATTCCTTTGGTTGCAACAG+TGG 0.512321 tig0001052:+24334 None:intergenic
GTTTAGACCTACTTTCAGAA+AGG 0.516126 tig0001052:-23931 Msa1336350:intron
AGTTTAACCTGCCATAAGAC+TGG 0.523445 tig0001052:+21429 None:intergenic
GTGCTCATAATGTACTGCTC+TGG 0.529003 tig0001052:+21498 None:intergenic
GAGGTACAAGATTTGCCAAA+GGG 0.534473 tig0001052:-21997 Msa1336350:three_prime_UTR
ACATTCAAGCCACTAGACTT+AGG 0.534526 tig0001052:+24065 None:intergenic
AATTCAACCGTCAATTAAAG+AGG 0.535042 tig0001052:-20884 Msa1336350:three_prime_UTR
TAACAAACCTTTCTGAAAGT+AGG 0.543091 tig0001052:+23924 None:intergenic
CTGTAGATATCAAATCTGTC+AGG 0.543319 tig0001052:+21303 None:intergenic
AATCTTGCACTGCATGGTGG+TGG 0.543569 tig0001052:+24218 None:intergenic
CTTCAGCTCTTAAAGTGCAA+AGG 0.564633 tig0001052:-20033 Msa1336350:three_prime_UTR
TGATTCTAAGTCTTTGGCCA+AGG 0.566305 tig0001052:+24264 None:intergenic
ATTCACTGAAGCTCAACTAC+AGG 0.570689 tig0001052:-20538 Msa1336350:three_prime_UTR
ACTCTCTCCAGTCTTATGGC+AGG 0.570820 tig0001052:-21436 Msa1336350:intron
CCACACTCCATCACAGTGCA+TGG 0.571570 tig0001052:+24113 None:intergenic
ATCCTTCCATTTCAGATATG+CGG 0.573898 tig0001052:-21523 Msa1336350:intron
ATTTGATACTCACCATTTGG+AGG 0.574767 tig0001052:+21265 None:intergenic
ACTGGAGCTGAGGGTGCAGA+TGG 0.578510 tig0001052:+21468 None:intergenic
AGATTTGATATCTACAGTAC+TGG 0.579644 tig0001052:-21297 Msa1336350:three_prime_UTR
ATTGTGCCCAAGAAGAAGGC+TGG 0.580227 tig0001052:-20076 Msa1336350:three_prime_UTR
CGAAACATTGATTCTTGGTG+AGG 0.582143 tig0001052:-22016 Msa1336350:three_prime_UTR
TTTAGATGGCGGAATAGGAT+GGG 0.582248 tig0001052:-20778 Msa1336350:three_prime_UTR
AAAACAGGAAAAGCATTTGG+TGG 0.582619 tig0001052:-19967 Msa1336350:three_prime_UTR
GAGCTGTTGGATTTAGATGG+CGG 0.583483 tig0001052:-20789 Msa1336350:three_prime_UTR
CAATAATAATACCTTTGATG+AGG 0.584378 tig0001052:+23041 None:intergenic
ACAGGAAAAGCATTTGGTGG+AGG 0.584401 tig0001052:-19964 Msa1336350:three_prime_UTR
GTGATGAATCTTGCACTGCA+TGG 0.588583 tig0001052:+24212 None:intergenic
ATGGCCACTGTTGCAACCAA+AGG 0.589790 tig0001052:-24338 Msa1336350:CDS
GTGACTATGACTTGGTTGCA+TGG 0.590726 tig0001052:-20860 Msa1336350:three_prime_UTR
TGCAGTTGCAACTGGAGCTG+AGG 0.594722 tig0001052:+21458 None:intergenic
AGGTGACTTAGTCTTGAAGA+AGG 0.596316 tig0001052:-22661 Msa1336350:CDS
TGTTTCAGAAACATAGTGAA+GGG 0.598126 tig0001052:+22174 None:intergenic
CATAAGCTGAATAATCCACT+TGG 0.599152 tig0001052:+20590 None:intergenic
GCTTATATGGAGGTTTGAAG+GGG 0.600363 tig0001052:-22391 Msa1336350:CDS
ACTCTGCAATAGATCAGCTA+AGG 0.600527 tig0001052:+22362 None:intergenic
TGGACTTCCATGCACTGTGA+TGG 0.608649 tig0001052:-24120 Msa1336350:CDS
AAAATCAGGAACAGAAAAGG+AGG 0.609977 tig0001052:-20565 Msa1336350:three_prime_UTR
GCTGCTACAGACTTGCGAGT+TGG 0.612827 tig0001052:-21724 Msa1336350:three_prime_UTR
CCATGCACTGTGATGGAGTG+TGG 0.621185 tig0001052:-24113 Msa1336350:CDS
TCCGATATAAAGCAAGGCAA+AGG 0.623569 tig0001052:-20737 Msa1336350:three_prime_UTR
AGCACACTTCCTAAGTCTAG+TGG 0.625149 tig0001052:-24074 Msa1336350:CDS
TATCTATCATGCAAAATCTG+AGG 0.626573 tig0001052:-20656 Msa1336350:three_prime_UTR
CAATGGTCCGATATAAAGCA+AGG 0.626697 tig0001052:-20743 Msa1336350:three_prime_UTR
GTGTTTCAGAAACATAGTGA+AGG 0.631803 tig0001052:+22173 None:intergenic
GCAGTTGCAACTGGAGCTGA+GGG 0.634177 tig0001052:+21459 None:intergenic
TCAGGAACAGAAAAGGAGGG+TGG 0.634221 tig0001052:-20561 Msa1336350:three_prime_UTR
TTATCAGTCTTTCATCTGTG+AGG 0.640787 tig0001052:-22220 Msa1336350:three_prime_UTR
TCAGAGAAAATAATGTTCTG+CGG 0.642515 tig0001052:+21874 None:intergenic
AAGGTCGCCAGTATCAGCCC+CGG 0.643106 tig0001052:-22062 Msa1336350:three_prime_UTR
TGAGGTACAAGATTTGCCAA+AGG 0.643878 tig0001052:-21998 Msa1336350:three_prime_UTR
CAAAAGCAAGAACAACACCA+GGG 0.646990 tig0001052:+24036 None:intergenic
GAGGAGATGGATCCCAAGAG+AGG 0.662184 tig0001052:-19945 Msa1336350:three_prime_UTR
TTAGAGATCATAAATAACCA+AGG 0.663644 tig0001052:+22084 None:intergenic
AAAGAGGTGTGACTATGACT+TGG 0.672074 tig0001052:-20868 Msa1336350:three_prime_UTR
ATGAATCTTGCACTGCATGG+TGG 0.677136 tig0001052:+24215 None:intergenic
AAAACTGTGGAGCCTCGATG+TGG 0.677269 tig0001052:-20834 Msa1336350:three_prime_UTR
TGTGGCGCTGAACTTAGGAG+AGG 0.694905 tig0001052:-20816 Msa1336350:three_prime_UTR
AAATCAGGAACAGAAAAGGA+GGG 0.696429 tig0001052:-20564 Msa1336350:three_prime_UTR
ATTATGGAGAAGCTGCCAAG+TGG 0.696799 tig0001052:-20605 Msa1336350:three_prime_UTR
CTAAGTTCAGCGCCACATCG+AGG 0.705406 tig0001052:+20822 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATTTTAATGAAATAGTATTT+CGG - tig0001052:20824-20843 Msa1336350:three_prime_UTR 10.0%
!! TATTATTATTGTTATGAATA+TGG - tig0001052:20980-20999 Msa1336350:intron 10.0%
!! ATGATATATATTCTATTTAT+AGG - tig0001052:21082-21101 Msa1336350:intron 10.0%
!!! AAATAAACAAAATTTGATTT+TGG + tig0001052:23746-23765 None:intergenic 10.0%
!! AAAAAAAAATGATCAATAAA+AGG + tig0001052:23900-23919 None:intergenic 10.0%
!! AAAAATATTGAAAAGAAAAA+GGG + tig0001052:24115-24134 None:intergenic 10.0%
!! ATAATTTAGGTAATAAATTG+AGG + tig0001052:20140-20159 None:intergenic 15.0%
!! TCTGATACTATATTAAAATT+TGG - tig0001052:20666-20685 Msa1336350:three_prime_UTR 15.0%
!!! TTTTAATGAAATAGTATTTC+GGG - tig0001052:20825-20844 Msa1336350:three_prime_UTR 15.0%
!! GAGAATCTATAAATAATTAA+TGG + tig0001052:21193-21212 None:intergenic 15.0%
!! ATTATTTATAGATTCTCTTA+AGG - tig0001052:21196-21215 Msa1336350:intron 15.0%
!! AAATTTAAATAGAACTTTCT+CGG + tig0001052:21898-21917 None:intergenic 15.0%
!!! TTTAATTTCTATATTAACCA+TGG - tig0001052:22224-22243 Msa1336350:three_prime_UTR 15.0%
!!! TTTTGTAGTTAAAATGATTA+TGG - tig0001052:22899-22918 Msa1336350:intron 15.0%
!!! CAATTTTGATCATTTTATAT+AGG - tig0001052:23066-23085 Msa1336350:CDS 15.0%
!!! ACTGATTTTTTTTTTTTTGA+TGG - tig0001052:23516-23535 Msa1336350:intron 15.0%
!! AAAATATTGAAAAGAAAAAG+GGG + tig0001052:24114-24133 None:intergenic 15.0%
!! CAAAAATATTGAAAAGAAAA+AGG + tig0001052:24116-24135 None:intergenic 15.0%
!!! ATTTATGTAACATTTTTTGA+AGG - tig0001052:24302-24321 Msa1336350:CDS 15.0%
!! AAATTTGAATTTGTAGTGTT+TGG - tig0001052:20339-20358 Msa1336350:intron 20.0%
!!! TTATTTTTACTAGCTTATAG+AGG + tig0001052:20514-20533 None:intergenic 20.0%
!! AATAGTATAGAGATAATTCA+GGG - tig0001052:20733-20752 Msa1336350:three_prime_UTR 20.0%
!! TAAATAGTAAACCTTCAATT+TGG + tig0001052:20789-20808 None:intergenic 20.0%
!! AATAATAATACCTTTGATGA+GGG + tig0001052:20970-20989 None:intergenic 20.0%
!! AATTGTTTAGTTATGACTTA+TGG - tig0001052:21300-21319 Msa1336350:three_prime_UTR 20.0%
!!! ATTTAAATTTTATGCTTCCT+TGG - tig0001052:21908-21927 Msa1336350:three_prime_UTR 20.0%
!! ATAGAAATTAAAGCATAACT+TGG + tig0001052:22216-22235 None:intergenic 20.0%
!! ACATTCAAAATAATTGATCT+TGG - tig0001052:22261-22280 Msa1336350:three_prime_UTR 20.0%
!! TGATTAGTAGATACATTATT+AGG - tig0001052:22406-22425 Msa1336350:CDS 20.0%
!! CATGAAAATCATTTAAACAA+TGG - tig0001052:22991-23010 Msa1336350:intron 20.0%
!!! TCAAATTTTGTTTATTTTGC+TGG - tig0001052:23749-23768 Msa1336350:intron 20.0%
!! AAGGGTTATAAATATGTTTA+TGG + tig0001052:23776-23795 None:intergenic 20.0%
!! CAAAAAATGTTACATAAATG+TGG + tig0001052:24301-24320 None:intergenic 20.0%
! ACAAACATATCAAAAAAACC+AGG + tig0001052:20037-20056 None:intergenic 25.0%
! TCAGGAGATTGTAATAATTT+AGG + tig0001052:20153-20172 None:intergenic 25.0%
!! TCTTATAAGTTAGCTTATAG+CGG - tig0001052:20234-20253 Msa1336350:intron 25.0%
!!! TTTTTTCAATTAAGGCTACA+CGG - tig0001052:20431-20450 Msa1336350:intron 25.0%
! GCTAGTAAAAATAAGCTATA+AGG - tig0001052:20520-20539 Msa1336350:intron 25.0%
! AAAAATAAGCTATAAGGTCA+TGG - tig0001052:20526-20545 Msa1336350:intron 25.0%
! AAAATAAGCTATAAGGTCAT+GGG - tig0001052:20527-20546 Msa1336350:intron 25.0%
!! GAACTAAAAAAAGACCATTT+TGG + tig0001052:20566-20585 None:intergenic 25.0%
! GAATAGTATAGAGATAATTC+AGG - tig0001052:20732-20751 Msa1336350:three_prime_UTR 25.0%
! CAATAATAATACCTTTGATG+AGG + tig0001052:20971-20990 None:intergenic 25.0%
! CCAAAAACGTTAAATAGTTT+AGG + tig0001052:21110-21129 None:intergenic 25.0%
!! CCTAAACTATTTAACGTTTT+TGG - tig0001052:21107-21126 Msa1336350:intron 25.0%
!! TTATGACTTATGGTACTTTT+TGG - tig0001052:21310-21329 Msa1336350:three_prime_UTR 25.0%
!!! TTTTGTTTATGGTTTTCTTG+AGG - tig0001052:21444-21463 Msa1336350:three_prime_UTR 25.0%
!!! TTACCATTTTAGTTTGCTTA+CGG - tig0001052:21534-21553 Msa1336350:intron 25.0%
!! TTTTCATTTACTATTTGCAG+AGG - tig0001052:21569-21588 Msa1336350:intron 25.0%
!! AGAGATTTTCCATATAATGT+TGG - tig0001052:21670-21689 Msa1336350:intron 25.0%
! TTAGAGATCATAAATAACCA+AGG + tig0001052:21928-21947 None:intergenic 25.0%
! TGGTTATTTATGATCTCTAA+AGG - tig0001052:21928-21947 Msa1336350:three_prime_UTR 25.0%
!! ACATGTGCTATTATTAATGA+TGG + tig0001052:22621-22640 None:intergenic 25.0%
! ATTATTTGATACTCACCATT+TGG + tig0001052:22750-22769 None:intergenic 25.0%
! AAATCATTTAAACAATGGCA+AGG - tig0001052:22996-23015 Msa1336350:intron 25.0%
! TACCAGTTTGATCATATAAT+TGG + tig0001052:23032-23051 None:intergenic 25.0%
! TGATGACTATGACAATAAAA+GGG + tig0001052:23794-23813 None:intergenic 25.0%
! ATGATGACTATGACAATAAA+AGG + tig0001052:23795-23814 None:intergenic 25.0%
! TCAACTATGAAGGAAAAAAA+GGG + tig0001052:23875-23894 None:intergenic 25.0%
!!! TCATTTTTTTTTTGCGTTGT+AGG - tig0001052:23908-23927 Msa1336350:intron 25.0%
! AAAAACCTTAAATGAGAGTA+TGG - tig0001052:24007-24026 Msa1336350:CDS 25.0%
!!! AGGAAGATGGATTTTTTGTT+GGG + tig0001052:19728-19747 None:intergenic 30.0%
!!! AAGGAAGATGGATTTTTTGT+TGG + tig0001052:19729-19748 None:intergenic 30.0%
AACAAAAAATCCATCTTCCT+TGG - tig0001052:19728-19747 Msa1336350:three_prime_UTR 30.0%
AGAGTTTGATTCTAAGTCTT+TGG + tig0001052:19754-19773 None:intergenic 30.0%
!! TTGTTCTTGCTTTTGTTGAA+AGG - tig0001052:20053-20072 Msa1336350:three_prime_UTR 30.0%
! TAACAAACCTTTCTGAAAGT+AGG + tig0001052:20088-20107 None:intergenic 30.0%
GTGATTGAATTTGTAGTGTT+TGG - tig0001052:20314-20333 Msa1336350:intron 30.0%
TGTAGTGTTTGGTAAAATAG+TGG - tig0001052:20350-20369 Msa1336350:intron 30.0%
!! TTTTTCAATTAAGGCTACAC+GGG - tig0001052:20432-20451 Msa1336350:intron 30.0%
!! AAAAAGACCATTTTGGTAAC+CGG + tig0001052:20559-20578 None:intergenic 30.0%
TACTATTTATCACCTCTCTT+AGG + tig0001052:20595-20614 None:intergenic 30.0%
CTAACTTTACCGTACAAAAT+CGG - tig0001052:20696-20715 Msa1336350:three_prime_UTR 30.0%
!! TCTATCAAACCGATTTTGTA+CGG + tig0001052:20708-20727 None:intergenic 30.0%
AACTTTCACTATCTGCTATT+TGG + tig0001052:20760-20779 None:intergenic 30.0%
ATAGCAGATAGTGAAAGTTT+AGG - tig0001052:20761-20780 Msa1336350:three_prime_UTR 30.0%
TAGCAGATAGTGAAAGTTTA+GGG - tig0001052:20762-20781 Msa1336350:three_prime_UTR 30.0%
TTGCTGAGAATGGTTTATTA+TGG - tig0001052:20866-20885 Msa1336350:three_prime_UTR 30.0%
TTCTTAGATATGATGAAGTC+AGG - tig0001052:21017-21036 Msa1336350:intron 30.0%
AAAATGAAGAACCAACTTGT+TGG - tig0001052:21232-21251 Msa1336350:intron 30.0%
! TTTATGGTTTTCTTGAGGTA+AGG - tig0001052:21449-21468 Msa1336350:three_prime_UTR 30.0%
! TTTCTTGAGGTAAGGATTTT+TGG - tig0001052:21457-21476 Msa1336350:three_prime_UTR 30.0%
! TTCTTGAGGTAAGGATTTTT+GGG - tig0001052:21458-21477 Msa1336350:three_prime_UTR 30.0%
AAGAGACTACCAACATTATA+TGG + tig0001052:21682-21701 None:intergenic 30.0%
TGTTTCAGAAACATAGTGAA+GGG + tig0001052:21838-21857 None:intergenic 30.0%
! ATGTTTCGACCTGAAATTTT+TGG + tig0001052:21981-22000 None:intergenic 30.0%
TCAGAGAAAATAATGTTCTG+CGG + tig0001052:22138-22157 None:intergenic 30.0%
! CAGAACATTATTTTCTCTGA+AGG - tig0001052:22138-22157 Msa1336350:three_prime_UTR 30.0%
! CATTCCTAAAGAGTTTCTTT+TGG - tig0001052:22317-22336 Msa1336350:exon 30.0%
! GTGCTATTATTAATGATGGA+TGG + tig0001052:22617-22636 None:intergenic 30.0%
AGATTTGATATCTACAGTAC+TGG - tig0001052:22712-22731 Msa1336350:intron 30.0%
AGCCAATTATATGATCAAAC+TGG - tig0001052:23027-23046 Msa1336350:intron 30.0%
! CATTTTATATAGGCATTTCC+TGG - tig0001052:23076-23095 Msa1336350:CDS 30.0%
ATTGACGGTTGAATTGTATA+AGG + tig0001052:23120-23139 None:intergenic 30.0%
AATTCAACCGTCAATTAAAG+AGG - tig0001052:23125-23144 Msa1336350:intron 30.0%
TATCTATCATGCAAAATCTG+AGG - tig0001052:23353-23372 Msa1336350:intron 30.0%
GTATCTAAAGAAATGACATG+TGG + tig0001052:23557-23576 None:intergenic 30.0%
CTTGTGTAAAAAACAGTGTA+AGG + tig0001052:23609-23628 None:intergenic 30.0%
AAAGTTGTTAAGTGACTGAA+AGG + tig0001052:23660-23679 None:intergenic 30.0%
! TTTTCATCCCTCCAAAAATA+GGG + tig0001052:23700-23719 None:intergenic 30.0%
! ATTTTCATCCCTCCAAAAAT+AGG + tig0001052:23701-23720 None:intergenic 30.0%
TCATAGTCATCATCTTCTTA+GGG - tig0001052:23802-23821 Msa1336350:intron 30.0%
GTCAACTATGAAGGAAAAAA+AGG + tig0001052:23876-23895 None:intergenic 30.0%
!! ATAAAAGGTGTCAACTATGA+AGG + tig0001052:23885-23904 None:intergenic 30.0%
GAATCGTATTTAGTATGCTA+TGG - tig0001052:24222-24241 Msa1336350:CDS 30.0%
TCAGATTCTACTTACTTCAT+AGG + tig0001052:24248-24267 None:intergenic 30.0%
!!! GATTTTTTGTTGGGGTTGTA+GGG + tig0001052:19719-19738 None:intergenic 35.0%
!!! GGAAGATGGATTTTTTGTTG+GGG + tig0001052:19727-19746 None:intergenic 35.0%
! TCAGCTCACAACCTTTTTAT+AGG - tig0001052:19857-19876 Msa1336350:three_prime_UTR 35.0%
! CACAACCTTTTTATAGGTGT+TGG - tig0001052:19863-19882 Msa1336350:three_prime_UTR 35.0%
CAACACCAACACCTATAAAA+AGG + tig0001052:19871-19890 None:intergenic 35.0%
!!! CTTTTTATAGGTGTTGGTGT+TGG - tig0001052:19869-19888 Msa1336350:three_prime_UTR 35.0%
! TTGGTGCTTTGTCTTATCTT+TGG - tig0001052:19993-20012 Msa1336350:three_prime_UTR 35.0%
TGGTGCTTTGTCTTATCTTT+GGG - tig0001052:19994-20013 Msa1336350:three_prime_UTR 35.0%
GTTTAGACCTACTTTCAGAA+AGG - tig0001052:20078-20097 Msa1336350:three_prime_UTR 35.0%
AGCTCGTCAAACAATATATC+AGG + tig0001052:20171-20190 None:intergenic 35.0%
TAGTTCAATGAACCTAAGAG+AGG - tig0001052:20580-20599 Msa1336350:three_prime_UTR 35.0%
! CGATTTTGTACGGTAAAGTT+AGG + tig0001052:20698-20717 None:intergenic 35.0%
AAGTTTAGGGACCAAATTGA+AGG - tig0001052:20775-20794 Msa1336350:three_prime_UTR 35.0%
!! CTATTTGTTGTTGCTGAGAA+TGG - tig0001052:20856-20875 Msa1336350:three_prime_UTR 35.0%
TGAGAATGGTTTATTATGGC+AGG - tig0001052:20870-20889 Msa1336350:three_prime_UTR 35.0%
!!! TGGCAGGATGATTTTGTTTT+AGG - tig0001052:20886-20905 Msa1336350:three_prime_UTR 35.0%
!!! GGCAGGATGATTTTGTTTTA+GGG - tig0001052:20887-20906 Msa1336350:three_prime_UTR 35.0%
!!! TTTTGTTTTAGGGAAGAAGC+TGG - tig0001052:20897-20916 Msa1336350:three_prime_UTR 35.0%
!!! TTTGTTTTAGGGAAGAAGCT+GGG - tig0001052:20898-20917 Msa1336350:three_prime_UTR 35.0%
CACATGATATACCAACAAGT+TGG + tig0001052:21246-21265 None:intergenic 35.0%
TGTGTTTGTGAGATTTCAGT+TGG - tig0001052:21262-21281 Msa1336350:intron 35.0%
!! TGAGATTTCAGTTGGTCTTT+GGG - tig0001052:21270-21289 Msa1336350:intron 35.0%
AATATGGCGCTGTAGAAATT+TGG - tig0001052:21377-21396 Msa1336350:intron 35.0%
!! AGCTGTGCAGATTTTGTTTA+TGG - tig0001052:21433-21452 Msa1336350:intron 35.0%
! TCTTGAGGTAAGGATTTTTG+GGG - tig0001052:21459-21478 Msa1336350:three_prime_UTR 35.0%
GTATCACTGTCTTACTTGTT+TGG - tig0001052:21481-21500 Msa1336350:three_prime_UTR 35.0%
TACTTGTTTGGAGAAATCGA+AGG - tig0001052:21493-21512 Msa1336350:three_prime_UTR 35.0%
TTGCCGTAAGCAAACTAAAA+TGG + tig0001052:21540-21559 None:intergenic 35.0%
CAAAGAAGACTCCTGAATAT+TGG - tig0001052:21596-21615 Msa1336350:intron 35.0%
!! CTCCTGAATATTGGCTTATA+TGG - tig0001052:21605-21624 Msa1336350:intron 35.0%
CTCCATATAAGCCAATATTC+AGG + tig0001052:21610-21629 None:intergenic 35.0%
!! CTGAATATTGGCTTATATGG+AGG - tig0001052:21608-21627 Msa1336350:intron 35.0%
TTATCAGTCTTTCATCTGTG+AGG - tig0001052:21789-21808 Msa1336350:intron 35.0%
GTGTTTCAGAAACATAGTGA+AGG + tig0001052:21839-21858 None:intergenic 35.0%
! TTTTCTCTTTCCAATCCCTT+TGG + tig0001052:22030-22049 None:intergenic 35.0%
! CAACTTTTGTTCGCATTAGA+CGG - tig0001052:22075-22094 Msa1336350:three_prime_UTR 35.0%
TCTATATTAACCATGGTCTC+AGG - tig0001052:22231-22250 Msa1336350:three_prime_UTR 35.0%
CTATATTAACCATGGTCTCA+GGG - tig0001052:22232-22251 Msa1336350:three_prime_UTR 35.0%
GGATCCAAAAGAAACTCTTT+AGG + tig0001052:22324-22343 None:intergenic 35.0%
! AAGAGTTTCTTTTGGATCCA+AGG - tig0001052:22325-22344 Msa1336350:CDS 35.0%
AAAGTCATCTGAAGATACCT+TGG + tig0001052:22345-22364 None:intergenic 35.0%
TAAACACAAACTTCGATCAG+TGG + tig0001052:22377-22396 None:intergenic 35.0%
ATCCTTCCATTTCAGATATG+CGG - tig0001052:22486-22505 Msa1336350:intron 35.0%
CTGTAGATATCAAATCTGTC+AGG + tig0001052:22709-22728 None:intergenic 35.0%
TGGTCTAATATTCCTCCAAA+TGG - tig0001052:22732-22751 Msa1336350:intron 35.0%
ATTTGATACTCACCATTTGG+AGG + tig0001052:22747-22766 None:intergenic 35.0%
! CAGTCTTGTATTTATCAACG+AGG + tig0001052:22868-22887 None:intergenic 35.0%
AGTCACACCTCTTTAATTGA+CGG + tig0001052:23135-23154 None:intergenic 35.0%
TTTGAGCTGTTGGATTTAGA+TGG - tig0001052:23217-23236 Msa1336350:intron 35.0%
! ATGGGAACTTTTGATGTCAA+TGG - tig0001052:23249-23268 Msa1336350:intron 35.0%
CATCCTTACTTTGACAAAGA+AGG - tig0001052:23319-23338 Msa1336350:intron 35.0%
AAGCCTTCTTTGTCAAAGTA+AGG + tig0001052:23325-23344 None:intergenic 35.0%
CATAAGCTGAATAATCCACT+TGG + tig0001052:23422-23441 None:intergenic 35.0%
!! CAAGTGGATTATTCAGCTTA+TGG - tig0001052:23420-23439 Msa1336350:intron 35.0%
ATTCAGCTTATGGCAAAATC+AGG - tig0001052:23430-23449 Msa1336350:intron 35.0%
AAAATCAGGAACAGAAAAGG+AGG - tig0001052:23444-23463 Msa1336350:intron 35.0%
AAATCAGGAACAGAAAAGGA+GGG - tig0001052:23445-23464 Msa1336350:intron 35.0%
GTCATAGTCATCATCTTCTT+AGG - tig0001052:23801-23820 Msa1336350:intron 35.0%
CATAGTCATCATCTTCTTAG+GGG - tig0001052:23803-23822 Msa1336350:intron 35.0%
CTCATCCATACTCTCATTTA+AGG + tig0001052:24015-24034 None:intergenic 35.0%
!! GCAAAAACAGGAAAAGCATT+TGG - tig0001052:24039-24058 Msa1336350:CDS 35.0%
!! AAAACAGGAAAAGCATTTGG+TGG - tig0001052:24042-24061 Msa1336350:CDS 35.0%
ACAACTTTCATTCCTCTCTT+GGG + tig0001052:24079-24098 None:intergenic 35.0%
TACAACTTTCATTCCTCTCT+TGG + tig0001052:24080-24099 None:intergenic 35.0%
GTTGCACGTCAAAATATTAC+AGG + tig0001052:24279-24298 None:intergenic 35.0%
AATTCCTTTGGTTGCAACAG+TGG + tig0001052:19678-19697 None:intergenic 40.0%
ACTGTTGCAACCAAAGGAAT+TGG - tig0001052:19677-19696 Msa1336350:three_prime_UTR 40.0%
CTTTGTGACTCCAATTCCTT+TGG + tig0001052:19690-19709 None:intergenic 40.0%
!!! GGATTTTTTGTTGGGGTTGT+AGG + tig0001052:19720-19739 None:intergenic 40.0%
TGATTCTAAGTCTTTGGCCA+AGG + tig0001052:19748-19767 None:intergenic 40.0%
ATCACCACAAAAGCCATTCA+TGG - tig0001052:19815-19834 Msa1336350:three_prime_UTR 40.0%
AATCCATTCAGCACCATGAA+TGG + tig0001052:19831-19850 None:intergenic 40.0%
ACATTCAAGCCACTAGACTT+AGG + tig0001052:19947-19966 None:intergenic 40.0%
CAAAAGCAAGAACAACACCA+GGG + tig0001052:19976-19995 None:intergenic 40.0%
!!! TTGTTTTAGGGAAGAAGCTG+GGG - tig0001052:20899-20918 Msa1336350:three_prime_UTR 40.0%
! TACCTTTGATGAGGGCTTTT+TGG + tig0001052:20962-20981 None:intergenic 40.0%
!! GTGAGATTTCAGTTGGTCTT+TGG - tig0001052:21269-21288 Msa1336350:intron 40.0%
!!! TGGTACTTTTTGGTTCTCAC+TGG - tig0001052:21320-21339 Msa1336350:intron 40.0%
!!! ACTTTTTGGTTCTCACTGGA+AGG - tig0001052:21324-21343 Msa1336350:intron 40.0%
!! AGGTGACTTAGTCTTGAAGA+AGG - tig0001052:21348-21367 Msa1336350:intron 40.0%
TTGAAGAAGGCGACTGAATA+TGG - tig0001052:21361-21380 Msa1336350:intron 40.0%
TGGCTTATATGGAGGTTTGA+AGG - tig0001052:21616-21635 Msa1336350:intron 40.0%
GGCTTATATGGAGGTTTGAA+GGG - tig0001052:21617-21636 Msa1336350:intron 40.0%
GCTTATATGGAGGTTTGAAG+GGG - tig0001052:21618-21637 Msa1336350:intron 40.0%
ACTCTGCAATAGATCAGCTA+AGG + tig0001052:21650-21669 None:intergenic 40.0%
!!! AAATTTTTGGCACCATCACC+GGG + tig0001052:21968-21987 None:intergenic 40.0%
!!! GAAATTTTTGGCACCATCAC+CGG + tig0001052:21969-21988 None:intergenic 40.0%
! GTGATGGTGCCAAAAATTTC+AGG - tig0001052:21969-21988 Msa1336350:three_prime_UTR 40.0%
!! CAGGTCGAAACATTGATTCT+TGG - tig0001052:21988-22007 Msa1336350:three_prime_UTR 40.0%
!! CGAAACATTGATTCTTGGTG+AGG - tig0001052:21993-22012 Msa1336350:three_prime_UTR 40.0%
TGAGGTACAAGATTTGCCAA+AGG - tig0001052:22011-22030 Msa1336350:three_prime_UTR 40.0%
GAGGTACAAGATTTGCCAAA+GGG - tig0001052:22012-22031 Msa1336350:three_prime_UTR 40.0%
ACAAGATTTGCCAAAGGGAT+TGG - tig0001052:22017-22036 Msa1336350:three_prime_UTR 40.0%
ACTCAACTGGTATTGTGCAT+AGG - tig0001052:22103-22122 Msa1336350:three_prime_UTR 40.0%
CTCAACTGGTATTGTGCATA+GGG - tig0001052:22104-22123 Msa1336350:three_prime_UTR 40.0%
! GATCCTTGATGACTCAAGTT+AGG - tig0001052:22428-22447 Msa1336350:intron 40.0%
CTTCCTAACTTGAGTCATCA+AGG + tig0001052:22434-22453 None:intergenic 40.0%
AAGGATTGTACACAGCATGA+GGG + tig0001052:22472-22491 None:intergenic 40.0%
AGTTTAACCTGCCATAAGAC+TGG + tig0001052:22583-22602 None:intergenic 40.0%
! AAAGAGGTGTGACTATGACT+TGG - tig0001052:23141-23160 Msa1336350:intron 40.0%
!! TTGGATTTAGATGGCGGAAT+AGG - tig0001052:23226-23245 Msa1336350:intron 40.0%
!! ATTTAGATGGCGGAATAGGA+TGG - tig0001052:23230-23249 Msa1336350:intron 40.0%
!! TTTAGATGGCGGAATAGGAT+GGG - tig0001052:23231-23250 Msa1336350:intron 40.0%
CAATGGTCCGATATAAAGCA+AGG - tig0001052:23266-23285 Msa1336350:intron 40.0%
TCCGATATAAAGCAAGGCAA+AGG - tig0001052:23272-23291 Msa1336350:intron 40.0%
GCCTTTGCCTTGCTTTATAT+CGG + tig0001052:23276-23295 None:intergenic 40.0%
CTTTGACAAAGAAGGCTTGT+TGG - tig0001052:23327-23346 Msa1336350:intron 40.0%
!!! GTTTTTTCGAGCAACACAAC+AGG - tig0001052:23381-23400 Msa1336350:intron 40.0%
GGCAAAATCAGGAACAGAAA+AGG - tig0001052:23441-23460 Msa1336350:intron 40.0%
ATTCACTGAAGCTCAACTAC+AGG - tig0001052:23471-23490 Msa1336350:intron 40.0%
TTACACAAGAGACTGTTTCC+AGG - tig0001052:23620-23639 Msa1336350:intron 40.0%
TTAAGTGACTGAAAGGTCAC+GGG + tig0001052:23653-23672 None:intergenic 40.0%
GTTAAGTGACTGAAAGGTCA+CGG + tig0001052:23654-23673 None:intergenic 40.0%
CTTCAGCTCTTAAAGTGCAA+AGG - tig0001052:23976-23995 Msa1336350:CDS 40.0%
! TTTTGTTGGGGTTGTAGGGA+TGG + tig0001052:19715-19734 None:intergenic 45.0%
AAGTCTTTGGCCAAGGAAGA+TGG + tig0001052:19741-19760 None:intergenic 45.0%
ATGAATCTTGCACTGCATGG+TGG + tig0001052:19797-19816 None:intergenic 45.0%
GTGATGAATCTTGCACTGCA+TGG + tig0001052:19800-19819 None:intergenic 45.0%
! AGCACCATGAATGGCTTTTG+TGG + tig0001052:19822-19841 None:intergenic 45.0%
! AAGCCATTCATGGTGCTGAA+TGG - tig0001052:19825-19844 Msa1336350:three_prime_UTR 45.0%
AGCACACTTCCTAAGTCTAG+TGG - tig0001052:19935-19954 Msa1336350:three_prime_UTR 45.0%
CCAAAAGCAAGAACAACACC+AGG + tig0001052:19977-19996 None:intergenic 45.0%
!!! CCTGGTGTTGTTCTTGCTTT+TGG - tig0001052:19974-19993 Msa1336350:three_prime_UTR 45.0%
TCTTATCTTTGGGCTACACC+TGG - tig0001052:20004-20023 Msa1336350:three_prime_UTR 45.0%
AAAAAACCAGGAGCAACACC+AGG + tig0001052:20025-20044 None:intergenic 45.0%
! ATAAGGTCATGGGAAAGTGC+CGG - tig0001052:20537-20556 Msa1336350:three_prime_UTR 45.0%
!! GAAAGTGCCGGTTACCAAAA+TGG - tig0001052:20549-20568 Msa1336350:three_prime_UTR 45.0%
!!! TGTTTTAGGGAAGAAGCTGG+GGG - tig0001052:20900-20919 Msa1336350:three_prime_UTR 45.0%
AGCCAAAAAGCCCTCATCAA+AGG - tig0001052:20957-20976 Msa1336350:intron 45.0%
ATGAAGTCAGGATACGAGCT+GGG - tig0001052:21029-21048 Msa1336350:intron 45.0%
!! TTTGGTTCTCACTGGAAGGA+AGG - tig0001052:21328-21347 Msa1336350:intron 45.0%
!!! AATTTTTGGCACCATCACCG+GGG + tig0001052:21967-21986 None:intergenic 45.0%
TTAGACGGTCTTCACTCAAC+TGG - tig0001052:22090-22109 Msa1336350:three_prime_UTR 45.0%
CAAACTTCGATCAGTGGAGT+AGG + tig0001052:22371-22390 None:intergenic 45.0%
GAAGGATTGTACACAGCATG+AGG + tig0001052:22473-22492 None:intergenic 45.0%
! TGCCGCATATCTGAAATGGA+AGG + tig0001052:22491-22510 None:intergenic 45.0%
GTGCTCATAATGTACTGCTC+TGG + tig0001052:22514-22533 None:intergenic 45.0%
CTATTATCAGAGCGTAAGCC+AGG + tig0001052:23097-23116 None:intergenic 45.0%
!! GTGACTATGACTTGGTTGCA+TGG - tig0001052:23149-23168 Msa1336350:intron 45.0%
GGTTGCATGGAGAAAAACTG+TGG - tig0001052:23162-23181 Msa1336350:intron 45.0%
GAGCTGTTGGATTTAGATGG+CGG - tig0001052:23220-23239 Msa1336350:intron 45.0%
CGAGCAACACAACAGGATTA+TGG - tig0001052:23388-23407 Msa1336350:intron 45.0%
ATTATGGAGAAGCTGCCAAG+TGG - tig0001052:23404-23423 Msa1336350:intron 45.0%
! TTTGATGGACACTCGACAGA+TGG - tig0001052:23531-23550 Msa1336350:intron 45.0%
ACAACTTTACCGTTGCACCA+AGG - tig0001052:23672-23691 Msa1336350:intron 45.0%
!!! CAAGGCTCCCTATTTTTGGA+GGG - tig0001052:23690-23709 Msa1336350:intron 45.0%
GGAAATTGTGCCCAAGAAGA+AGG - tig0001052:23929-23948 Msa1336350:intron 45.0%
TGGATGAGCTCAGCAAAAAC+AGG - tig0001052:24027-24046 Msa1336350:CDS 45.0%
!! ACAGGAAAAGCATTTGGTGG+AGG - tig0001052:24045-24064 Msa1336350:CDS 45.0%
! AAAGCATTTGGTGGAGGAGA+TGG - tig0001052:24051-24070 Msa1336350:CDS 45.0%
!!! ATATTTATTTTTTTCAATTA+AGG - tig0001052:20423-20442 Msa1336350:intron 5.0%
!!! AAATTTTGTTATAAAATTTA+AGG + tig0001052:21752-21771 None:intergenic 5.0%
ATGGCCACTGTTGCAACCAA+AGG - tig0001052:19671-19690 Msa1336350:three_prime_UTR 50.0%
AATCTTGCACTGCATGGTGG+TGG + tig0001052:19794-19813 None:intergenic 50.0%
TGGACTTCCATGCACTGTGA+TGG - tig0001052:19889-19908 Msa1336350:three_prime_UTR 50.0%
GGCTTGAATGTTACTGTCCC+TGG - tig0001052:19956-19975 Msa1336350:three_prime_UTR 50.0%
ATCCATAACCCACATGTCCC+TGG - tig0001052:20630-20649 Msa1336350:three_prime_UTR 50.0%
! ATCCAGGGACATGTGGGTTA+TGG + tig0001052:20635-20654 None:intergenic 50.0%
GATGAAGTCAGGATACGAGC+TGG - tig0001052:21028-21047 Msa1336350:intron 50.0%
TGAAGTCAGGATACGAGCTG+GGG - tig0001052:21030-21049 Msa1336350:intron 50.0%
!! CTGGTGCCGCATATCTGAAA+TGG + tig0001052:22495-22514 None:intergenic 50.0%
CTGCACTCTCTCCAGTCTTA+TGG - tig0001052:22569-22588 Msa1336350:CDS 50.0%
! ACTCTCTCCAGTCTTATGGC+AGG - tig0001052:22573-22592 Msa1336350:CDS 50.0%
AAAACTGTGGAGCCTCGATG+TGG - tig0001052:23175-23194 Msa1336350:intron 50.0%
!! TAGGAGAGGCTTTGAGCTGT+TGG - tig0001052:23207-23226 Msa1336350:intron 50.0%
TCAGGAACAGAAAAGGAGGG+TGG - tig0001052:23448-23467 Msa1336350:intron 50.0%
! AATAGGGAGCCTTGGTGCAA+CGG + tig0001052:23684-23703 None:intergenic 50.0%
! GCACCAAGGCTCCCTATTTT+TGG - tig0001052:23686-23705 Msa1336350:intron 50.0%
CCTCCAAAAATAGGGAGCCT+TGG + tig0001052:23692-23711 None:intergenic 50.0%
!!! CCAAGGCTCCCTATTTTTGG+AGG - tig0001052:23689-23708 Msa1336350:intron 50.0%
ATTGTGCCCAAGAAGAAGGC+TGG - tig0001052:23933-23952 Msa1336350:CDS 50.0%
TGTGCACCAGCCTTCTTCTT+GGG + tig0001052:23942-23961 None:intergenic 50.0%
TTGTGCACCAGCCTTCTTCT+TGG + tig0001052:23943-23962 None:intergenic 50.0%
CCACACTCCATCACAGTGCA+TGG + tig0001052:19899-19918 None:intergenic 55.0%
! CCATGCACTGTGATGGAGTG+TGG - tig0001052:19896-19915 Msa1336350:three_prime_UTR 55.0%
GTCTCGATCCAGGGACATGT+GGG + tig0001052:20641-20660 None:intergenic 55.0%
TTTAGGGAAGAAGCTGGGGG+AGG - tig0001052:20903-20922 Msa1336350:three_prime_UTR 55.0%
TTAGGGAAGAAGCTGGGGGA+GGG - tig0001052:20904-20923 Msa1336350:three_prime_UTR 55.0%
AAGCTGGGGGAGGGATCATT+TGG - tig0001052:20913-20932 Msa1336350:three_prime_UTR 55.0%
TGTACGAGACCCTGAGACCA+TGG + tig0001052:22244-22263 None:intergenic 55.0%
GCTGCTACAGACTTGCGAGT+TGG - tig0001052:22285-22304 Msa1336350:three_prime_UTR 55.0%
GCAGTTGCAACTGGAGCTGA+GGG + tig0001052:22553-22572 None:intergenic 55.0%
TGCAGTTGCAACTGGAGCTG+AGG + tig0001052:22554-22573 None:intergenic 55.0%
! GGAGAGAGTGCAGTTGCAAC+TGG + tig0001052:22562-22581 None:intergenic 55.0%
CTAAGTTCAGCGCCACATCG+AGG + tig0001052:23190-23209 None:intergenic 55.0%
! CTCGATGTGGCGCTGAACTT+AGG - tig0001052:23188-23207 Msa1336350:intron 55.0%
! TGTGGCGCTGAACTTAGGAG+AGG - tig0001052:23193-23212 Msa1336350:intron 55.0%
AAGGTCACGGGTTCAAGTCC+TGG + tig0001052:23641-23660 None:intergenic 55.0%
GAGGAGATGGATCCCAAGAG+AGG - tig0001052:24064-24083 Msa1336350:CDS 55.0%
!! CTTGCACTGCATGGTGGTGG+TGG + tig0001052:19791-19810 None:intergenic 60.0%
!! GCTACACCTGGTGTTGCTCC+TGG - tig0001052:20016-20035 Msa1336350:three_prime_UTR 60.0%
CGTCTCGATCCAGGGACATG+TGG + tig0001052:20642-20661 None:intergenic 60.0%
CATGTCCCTGGATCGAGACG+AGG - tig0001052:20642-20661 Msa1336350:three_prime_UTR 60.0%
CAGAGCCTCGTCTCGATCCA+GGG + tig0001052:20650-20669 None:intergenic 60.0%
TCAGAGCCTCGTCTCGATCC+AGG + tig0001052:20651-20670 None:intergenic 60.0%
AAGGTCGCCAGTATCAGCCC+CGG - tig0001052:21947-21966 Msa1336350:three_prime_UTR 60.0%
ACCATCACCGGGGCTGATAC+TGG + tig0001052:21957-21976 None:intergenic 60.0%
! ACTGGAGCTGAGGGTGCAGA+TGG + tig0001052:22544-22563 None:intergenic 60.0%
GCCAGTATCAGCCCCGGTGA+TGG - tig0001052:21953-21972 Msa1336350:three_prime_UTR 65.0%
Chromosome Type Strat End Strand Name
tig0001052 gene 19671 24360 19671 ID=Msa1336350;Name=Msa1336350
tig0001052 mRNA 19671 24360 19671 ID=Msa1336350-mRNA-1;Parent=Msa1336350;Name=Msa1336350-mRNA-1;_AED=0.11;_eAED=0.11;_QI=0|0.88|0.8|1|1|0.9|10|1541|237
tig0001052 exon 19671 20101 19671 ID=Msa1336350-mRNA-1:exon:701;Parent=Msa1336350-mRNA-1
tig0001052 exon 20530 20943 20530 ID=Msa1336350-mRNA-1:exon:700;Parent=Msa1336350-mRNA-1
tig0001052 exon 21278 21334 21278 ID=Msa1336350-mRNA-1:exon:699;Parent=Msa1336350-mRNA-1
tig0001052 exon 21437 21530 21437 ID=Msa1336350-mRNA-1:exon:698;Parent=Msa1336350-mRNA-1
tig0001052 exon 21685 21778 21685 ID=Msa1336350-mRNA-1:exon:697;Parent=Msa1336350-mRNA-1
tig0001052 exon 21872 22442 21872 ID=Msa1336350-mRNA-1:exon:696;Parent=Msa1336350-mRNA-1
tig0001052 exon 22566 22685 22566 ID=Msa1336350-mRNA-1:exon:695;Parent=Msa1336350-mRNA-1
tig0001052 exon 23053 23139 23053 ID=Msa1336350-mRNA-1:exon:694;Parent=Msa1336350-mRNA-1
tig0001052 exon 23932 24152 23932 ID=Msa1336350-mRNA-1:exon:693;Parent=Msa1336350-mRNA-1
tig0001052 exon 24195 24360 24195 ID=Msa1336350-mRNA-1:exon:692;Parent=Msa1336350-mRNA-1
tig0001052 CDS 24195 24360 24195 ID=Msa1336350-mRNA-1:cds;Parent=Msa1336350-mRNA-1
tig0001052 CDS 23932 24152 23932 ID=Msa1336350-mRNA-1:cds;Parent=Msa1336350-mRNA-1
tig0001052 CDS 23053 23139 23053 ID=Msa1336350-mRNA-1:cds;Parent=Msa1336350-mRNA-1
tig0001052 CDS 22566 22685 22566 ID=Msa1336350-mRNA-1:cds;Parent=Msa1336350-mRNA-1
tig0001052 CDS 22323 22442 22323 ID=Msa1336350-mRNA-1:cds;Parent=Msa1336350-mRNA-1
tig0001052 three_prime_UTR 21872 22322 21872 ID=Msa1336350-mRNA-1:three_prime_utr;Parent=Msa1336350-mRNA-1
tig0001052 three_prime_UTR 21685 21778 21685 ID=Msa1336350-mRNA-1:three_prime_utr;Parent=Msa1336350-mRNA-1
tig0001052 three_prime_UTR 21437 21530 21437 ID=Msa1336350-mRNA-1:three_prime_utr;Parent=Msa1336350-mRNA-1
tig0001052 three_prime_UTR 21278 21334 21278 ID=Msa1336350-mRNA-1:three_prime_utr;Parent=Msa1336350-mRNA-1
tig0001052 three_prime_UTR 20530 20943 20530 ID=Msa1336350-mRNA-1:three_prime_utr;Parent=Msa1336350-mRNA-1
tig0001052 three_prime_UTR 19671 20101 19671 ID=Msa1336350-mRNA-1:three_prime_utr;Parent=Msa1336350-mRNA-1
Gene Sequence

>Msa1336350

ATGGCCACTGTTGCAACCAAAGGAATTGGAGTCACAAAGCTCCATCCCTACAACCCCAACAAAAAATCCATCTTCCTTGGCCAAAGACTTAGAATCAAACTCTCAAACAATGAACAACCACCACCACCATGCAGTGCAAGATTCATCACCACAAAAGCCATTCATGGTGTTGGTGTTGGACTTCCATGCACTGTGATGGAGTGTGGAGATATGATCTATAGAAGCACACTTCCTAAGTCTAGTGGCTTGAATGTTACTGTCCCTGGTGTTGTTCTTGCTTTTGGTGCTTTGTCTTATCTTTGGGCTACACCTGGTGTTGCTCCTGGTTTTTTTGATATGTTTGTTCTTGCTTTTGTTGAAAGGTTGTTTAGACCTACTTTCAGAAAGGATGATTTTGTTTTAGGGAAGAAGCTGGGGGAGGGATCATTTGGAGTTGTTTATAGAGTGACACTAGCCAAAAAGCCCTCATCAAAGGAAGGTGACTTAGTCTTGAAGAAGGCGACTGAATATGGCGCTGTAGAAATTTGGATGAATGAACGAGTACGAAGAGCTTGTGCAAACAGCTGTGCAGATTTTGTTTATGGTTTTCTTGAGAGGTCTACAAAGAAGACTCCTGAATATTGGCTTATATGGAGGTTTGAAGGGGATGCTACCTTAGCTGATCTATTGCAGAGTAGAGATTTTCCATATAATGTTGGTAGTCTCTTTAATTAA

Protein sequence

>Msa1336350

MATVATKGIGVTKLHPYNPNKKSIFLGQRLRIKLSNNEQPPPPCSARFITTKAIHGVGVGLPCTVMECGDMIYRSTLPKSSGLNVTVPGVVLAFGALSYLWATPGVAPGFFDMFVLAFVERLFRPTFRKDDFVLGKKLGEGSFGVVYRVTLAKKPSSKEGDLVLKKATEYGAVEIWMNERVRRACANSCADFVYGFLERSTKKTPEYWLIWRFEGDATLADLLQSRDFPYNVGSLFN*