AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1407610


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1407610 MtrunA17_Chr8g0391671 97.516 483 11 1 1 483 1 482 0.0 963
Msa1407610 MtrunA17_Chr5g0397811 92.381 105 7 1 196 300 3 106 5.40e-64 202
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1407610 AT1G24610.1 66.385 473 154 4 11 480 4 474 0.0 631

Find 117 sgRNAs with CRISPR-Local

Find 215 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GGTATTGAATTTGGTTAATA+TGG 0.180279 tig0023317:-48936 Msa1407610:exon
AGATTCATCATCCATTAATT+TGG 0.191527 tig0023317:+45881 None:intergenic
CAAATATGATGGTGCTCTTT+TGG 0.205619 tig0023317:-47157 Msa1407610:CDS
CTCGATTCCTCAAATGGTTT+AGG 0.230593 tig0023317:-48728 Msa1407610:CDS
ACACTTTCCCACCAAATTAA+TGG 0.235094 tig0023317:-45892 Msa1407610:CDS
CTATAATTACAGACTTCTTT+TGG 0.248268 tig0023317:+45805 None:intergenic
CATCCATAGCAAAGTAATAA+AGG 0.272419 tig0023317:+47252 None:intergenic
TCGATTCCTCAAATGGTTTA+GGG 0.287954 tig0023317:-48727 Msa1407610:CDS
TCCTGAACAATTCTAGCATT+TGG 0.291593 tig0023317:+47491 None:intergenic
GAGTGAAAGGGTATTGAATT+TGG 0.293052 tig0023317:-48945 Msa1407610:five_prime_UTR
TTATTGAAGCAGGGTGCTTC+AGG 0.306570 tig0023317:-45858 Msa1407610:CDS
CTCAAATGGTTTAGGGTTAG+TGG 0.331608 tig0023317:-48720 Msa1407610:CDS
CCACCAAACGGATGCATATC+TGG 0.334061 tig0023317:+47665 None:intergenic
TCTTCCCCAGGAAAGAAAAT+AGG 0.342405 tig0023317:+48312 None:intergenic
GAGATGAAGCATCTACTTCT+TGG 0.347456 tig0023317:+47642 None:intergenic
TAAGTGACATTGAACACTTT+TGG 0.368647 tig0023317:-45666 Msa1407610:three_prime_UTR
TCCAAATGCTAGAATTGTTC+AGG 0.369501 tig0023317:-47492 Msa1407610:CDS
CAATTAACCTCCCATGTTCC+CGG 0.370584 tig0023317:-48596 Msa1407610:intron
GGAGCAGGTGTAGAGAAATT+TGG 0.377711 tig0023317:+47102 None:intergenic
GAAGTAGATGCTTCATCTCT+TGG 0.384991 tig0023317:-47638 Msa1407610:CDS
CATGGTAACAAGCAATCAAA+TGG 0.388478 tig0023317:-47575 Msa1407610:CDS
CACCCACATCTTTGTGCTAC+CGG 0.389753 tig0023317:+47460 None:intergenic
AGTACTCCTTGCAAGTGATA+TGG 0.393467 tig0023317:-46036 Msa1407610:CDS
CTTCATGAAAGGGCAAAACT+TGG 0.399181 tig0023317:-48384 Msa1407610:CDS
GCTCAAAATCAAGAAGAAAT+CGG 0.402032 tig0023317:+47720 None:intergenic
GCAATTAGGTCAGTACCAAT+TGG 0.411464 tig0023317:+48683 None:intergenic
GTGGAAGATACCTTGAGATC+TGG 0.412921 tig0023317:+47033 None:intergenic
TTGGTTAATATGGTTATAGT+TGG 0.414989 tig0023317:-48926 Msa1407610:exon
CACTAACCCTAAACCATTTG+AGG 0.419235 tig0023317:+48721 None:intergenic
ATCCACACGATCTCATCAAA+TGG 0.420118 tig0023317:-48799 Msa1407610:CDS
GACCCTTTATTACTTTGCTA+TGG 0.431078 tig0023317:-47255 Msa1407610:CDS
AATAATAGAAGGTCGTTTGT+TGG 0.431982 tig0023317:-46069 Msa1407610:CDS
GCACAACTCGATTCCTCAAA+TGG 0.432361 tig0023317:-48734 Msa1407610:CDS
TTAGATGCTGAGGCTCCTCT+TGG 0.432705 tig0023317:-45975 Msa1407610:CDS
ATCCATAGCAAAGTAATAAA+GGG 0.432856 tig0023317:+47253 None:intergenic
TGATTACACATGTCAATTAG+AGG 0.440828 tig0023317:+47524 None:intergenic
GATGAAGATGCGCATGTTAG+TGG 0.442848 tig0023317:+48848 None:intergenic
GTTAATATGGTTATAGTTGG+TGG 0.443140 tig0023317:-48923 Msa1407610:exon
AAGTGTACCTGGTGAAGAAT+AGG 0.446363 tig0023317:+48267 None:intergenic
TTATAGTTGGTGGTGGTAGT+TGG 0.452028 tig0023317:-48913 Msa1407610:CDS
TTGAGCTCGATACAGTCATA+AGG 0.453734 tig0023317:+47177 None:intergenic
GAAAAGTAGAGTAGAGTGAA+AGG 0.459061 tig0023317:-48958 Msa1407610:five_prime_UTR
TAGGAAGAGTGTAAGTTTGT+GGG 0.460771 tig0023317:+48331 None:intergenic
TGAATTGTGGGCAATGAAGC+TGG 0.463428 tig0023317:-48418 Msa1407610:CDS
TGAGCTCGATACAGTCATAA+GGG 0.476129 tig0023317:+47178 None:intergenic
TGATGAATCTTTATTGAAGC+AGG 0.476763 tig0023317:-45868 Msa1407610:CDS
TTCATCATCCATTAATTTGG+TGG 0.478727 tig0023317:+45884 None:intergenic
TTCATGTAACAGGTGAGCTT+AGG 0.480929 tig0023317:-46101 Msa1407610:intron
ATGTAACAGGTGAGCTTAGG+TGG 0.482998 tig0023317:-46098 Msa1407610:intron
TGTGTTGAGGAAGAGCAATT+AGG 0.483022 tig0023317:+48669 None:intergenic
GATGCTGCGAGCATGGCCGC+TGG 0.487107 tig0023317:-47135 Msa1407610:CDS
ATAGGAAGAGTGTAAGTTTG+TGG 0.491387 tig0023317:+48330 None:intergenic
CAATTAGGTCAGTACCAATT+GGG 0.491707 tig0023317:+48684 None:intergenic
TTTGAAGCTTCTTCATGAAA+GGG 0.494538 tig0023317:-48394 Msa1407610:CDS
GTTTGAAGCTTCTTCATGAA+AGG 0.494844 tig0023317:-48395 Msa1407610:CDS
CTCTACACCTGCTCCATGGC+AGG 0.495127 tig0023317:-47094 Msa1407610:CDS
TGGTTTAGGGTTAGTGGCTA+AGG 0.496899 tig0023317:-48714 Msa1407610:CDS
ACACCAGATATGCATCCGTT+TGG 0.501980 tig0023317:-47668 Msa1407610:CDS
GCTAAGGAAGATATCCCAAT+TGG 0.505887 tig0023317:-48698 Msa1407610:CDS
CCAGATATGCATCCGTTTGG+TGG 0.506084 tig0023317:-47665 Msa1407610:CDS
TGTGGGAGATTACTGATGTA+TGG 0.507516 tig0023317:+48348 None:intergenic
GCATTTGGCAGATGAATTGT+GGG 0.511625 tig0023317:-48430 Msa1407610:intron
TCAAGAGCATTCAAGTTACA+TGG 0.514609 tig0023317:-47593 Msa1407610:CDS
GGTAAAGCTTCTTTCATCAA+AGG 0.514902 tig0023317:-45757 Msa1407610:CDS
CTATCTCAGCTAAATCTAGC+TGG 0.514942 tig0023317:-47063 Msa1407610:CDS
GGTGGGCAAGAAATAATAGA+AGG 0.517366 tig0023317:-46080 Msa1407610:CDS
TAGATGCTTCATCTCTTGGA+TGG 0.521095 tig0023317:-47634 Msa1407610:CDS
TCATCATCCATTAATTTGGT+GGG 0.525608 tig0023317:+45885 None:intergenic
ATAAGTTCCTGCCATGGAGC+AGG 0.528390 tig0023317:+47087 None:intergenic
GAAGCTTTACCTTCCTTGAG+AGG 0.528724 tig0023317:+45769 None:intergenic
AATGACACACAGAGCAATCA+AGG 0.529045 tig0023317:+45923 None:intergenic
AATATGGTTATAGTTGGTGG+TGG 0.531556 tig0023317:-48920 Msa1407610:CDS
TCAATTAGAGGGAGCATCAT+GGG 0.532994 tig0023317:+47536 None:intergenic
TCCACACGATCTCATCAAAT+GGG 0.536822 tig0023317:-48798 Msa1407610:CDS
TGGTGGTGGTAGTTGGAAAA+CGG 0.543989 tig0023317:-48906 Msa1407610:CDS
GTCAATTAGAGGGAGCATCA+TGG 0.544285 tig0023317:+47535 None:intergenic
ATGGTAACAAGCAATCAAAT+GGG 0.547291 tig0023317:-47574 Msa1407610:CDS
AAAAGTAGAGTAGAGTGAAA+GGG 0.548453 tig0023317:-48957 Msa1407610:five_prime_UTR
TCACAAATCCATAATCAAGA+AGG 0.549483 tig0023317:+47211 None:intergenic
TCTACTTCTTGGCCACCAAA+CGG 0.549674 tig0023317:+47653 None:intergenic
ATCAAATGGGTAACAAGAGA+AGG 0.550397 tig0023317:-48785 Msa1407610:CDS
TGTGGCTGAGAAAGCAATCA+AGG 0.555448 tig0023317:-47283 Msa1407610:CDS
AGCATTTGGCAGATGAATTG+TGG 0.556575 tig0023317:-48431 Msa1407610:intron
CTATGCTCCTATTCTTCACC+AGG 0.562752 tig0023317:-48274 Msa1407610:intron
AAGCCGGTAGCACAAAGATG+TGG 0.568257 tig0023317:-47463 Msa1407610:CDS
TGGAGAAACTCCAGATCTCA+AGG 0.573409 tig0023317:-47043 Msa1407610:intron
GCTTCTTTCATCAAAGGAGA+CGG 0.577964 tig0023317:-45751 Msa1407610:CDS
AAGGAGACGGTCACTACTGA+AGG 0.581558 tig0023317:-45738 Msa1407610:CDS
GATGAATCTTTATTGAAGCA+GGG 0.583312 tig0023317:-45867 Msa1407610:CDS
CACTTGCCATATCACTTGCA+AGG 0.586602 tig0023317:+46030 None:intergenic
CATGGGAGGTTAATTGAAGG+AGG 0.592569 tig0023317:+48603 None:intergenic
AAATTCTTGATGTCTTCCCC+AGG 0.592666 tig0023317:+48300 None:intergenic
TTGATGAGATCGTGTGGATG+AGG 0.593115 tig0023317:+48803 None:intergenic
AAAGTCAAGCATGCATTAGT+CGG 0.594145 tig0023317:-47695 Msa1407610:CDS
GCTCTGTGTGTCATTGCACT+AGG 0.596790 tig0023317:-45915 Msa1407610:CDS
GAACATGGGAGGTTAATTGA+AGG 0.597020 tig0023317:+48600 None:intergenic
GATTACACATGTCAATTAGA+GGG 0.597579 tig0023317:+47525 None:intergenic
ACTTAAGTCTTTAGATGCTG+AGG 0.601367 tig0023317:-45985 Msa1407610:CDS
AAGTGCAGAGGAATGTGTTG+AGG 0.602415 tig0023317:+48656 None:intergenic
CTAAAGACTTAAGTGTGTTG+AGG 0.608231 tig0023317:+45994 None:intergenic
AAATGGGTAACAAGAGAAGG+TGG 0.609234 tig0023317:-48782 Msa1407610:CDS
AGATGCTTCATCTCTTGGAT+GGG 0.610544 tig0023317:-47633 Msa1407610:CDS
GAATTGTGGGCAATGAAGCT+GGG 0.611628 tig0023317:-48417 Msa1407610:CDS
ATTTCTCTACACCTGCTCCA+TGG 0.612721 tig0023317:-47098 Msa1407610:CDS
TAGCACAAAGATGTGGGTGA+AGG 0.614670 tig0023317:-47456 Msa1407610:intron
AGCCGGTAGCACAAAGATGT+GGG 0.619848 tig0023317:-47462 Msa1407610:CDS
ATTGTTCAGGAACAAGAAGC+CGG 0.621234 tig0023317:-47479 Msa1407610:CDS
TGTAACAGGTGAGCTTAGGT+GGG 0.630878 tig0023317:-46097 Msa1407610:intron
GATAGAATAAGTTCCTGCCA+TGG 0.632180 tig0023317:+47081 None:intergenic
TCATCATCGTTGAAGTGCAG+AGG 0.633506 tig0023317:+48644 None:intergenic
TGTATCGAGCTCAAATATGA+TGG 0.639565 tig0023317:-47168 Msa1407610:CDS
AGGTCATTTGCAACACCAAG+AGG 0.646673 tig0023317:+45960 None:intergenic
TTACTTACCGGGAACATGGG+AGG 0.654333 tig0023317:+48589 None:intergenic
ACCCATTTGATGAGATCGTG+TGG 0.664082 tig0023317:+48797 None:intergenic
TCAAGGTACGAAATACAGCA+AGG 0.687972 tig0023317:+45940 None:intergenic
GTTGTGCTATCTTCACAGCA+CGG 0.695139 tig0023317:+48750 None:intergenic
ATTTGGTGAAGAAACTCCAG+CGG 0.710039 tig0023317:+47119 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTAAAAATGAAAACTACTAT+TGG - tig0023317:47580-47599 Msa1407610:CDS 15.0%
!! TATATTTATTAACCATTCAA+TGG + tig0023317:47728-47747 None:intergenic 15.0%
!!! TTCAAATATACATGATTTTA+AGG + tig0023317:47893-47912 None:intergenic 15.0%
!!! AATGTTTTTATAGCAAATAT+TGG - tig0023317:48266-48285 Msa1407610:intron 15.0%
!! AAAAATAGTATAATGCTTTG+TGG - tig0023317:46354-46373 Msa1407610:intron 20.0%
!! ATAACTAAATCGTGATAATT+AGG + tig0023317:46643-46662 None:intergenic 20.0%
!!! GTCATTATACATAATTTTTC+AGG + tig0023317:47974-47993 None:intergenic 20.0%
!! TTTAGATCGTTAAGTATATA+TGG + tig0023317:48046-48065 None:intergenic 20.0%
!! AACATAATGCGTAAAAATAA+TGG + tig0023317:48194-48213 None:intergenic 20.0%
!! AAAGTTCATAGTTATTCTAT+AGG + tig0023317:48240-48259 None:intergenic 20.0%
!!! TAAATCAAATTTTGACCTTA+TGG + tig0023317:48432-48451 None:intergenic 20.0%
!!! ATTTACTTTTTTCATGTAAC+AGG - tig0023317:48447-48466 Msa1407610:intron 20.0%
!! GGTATTGAATTTGGTTAATA+TGG - tig0023317:45622-45641 Msa1407610:three_prime_UTR 25.0%
! TTGGTTAATATGGTTATAGT+TGG - tig0023317:45632-45651 Msa1407610:three_prime_UTR 25.0%
! TAAAAACCAGTCGTAAAATT+CGG - tig0023317:46436-46455 Msa1407610:intron 25.0%
! AAATTGCTCATTTCAAAAGT+GGG + tig0023317:46674-46693 None:intergenic 25.0%
!!! ACTTTTGAAATGAGCAATTT+GGG - tig0023317:46674-46693 Msa1407610:intron 25.0%
!!! TAATTATTTTGAATGCCTTG+CGG - tig0023317:46752-46771 Msa1407610:intron 25.0%
! AGGAATTCAATATTTACCTT+AGG - tig0023317:47251-47270 Msa1407610:CDS 25.0%
! ATCCATAGCAAAGTAATAAA+GGG + tig0023317:47308-47327 None:intergenic 25.0%
!! AATACAGCTATAGAATTTTG+TGG + tig0023317:47547-47566 None:intergenic 25.0%
! ACATTCAAAATGGTTGTTAA+CGG + tig0023317:47793-47812 None:intergenic 25.0%
! GAGATTAATGACATTCAAAA+TGG + tig0023317:47803-47822 None:intergenic 25.0%
! ATGTATATTTGAATCCAGTT+TGG - tig0023317:47900-47919 Msa1407610:intron 25.0%
! CATATATTAATCATCCAAAC+TGG + tig0023317:47917-47936 None:intergenic 25.0%
! CAGTTTGGATGATTAATATA+TGG - tig0023317:47915-47934 Msa1407610:intron 25.0%
!!! TGCGTAAAAATAATGGATTA+TGG + tig0023317:48187-48206 None:intergenic 25.0%
! TTCATAGTTATTCTATAGGA+AGG + tig0023317:48236-48255 None:intergenic 25.0%
!! GCAATTGATATGAAAGTTTT+GGG + tig0023317:48391-48410 None:intergenic 25.0%
!! AGCAATTGATATGAAAGTTT+TGG + tig0023317:48392-48411 None:intergenic 25.0%
! AGATTCATCATCCATTAATT+TGG + tig0023317:48680-48699 None:intergenic 25.0%
!! CTATAATTACAGACTTCTTT+TGG + tig0023317:48756-48775 None:intergenic 25.0%
AAAAGTAGAGTAGAGTGAAA+GGG - tig0023317:45601-45620 Msa1407610:three_prime_UTR 30.0%
GTTAATATGGTTATAGTTGG+TGG - tig0023317:45635-45654 Msa1407610:three_prime_UTR 30.0%
!! TTTCTTTCTAGAGTCTTGTT+TGG + tig0023317:46062-46081 None:intergenic 30.0%
GTTGAATAAATTGGACAATG+TGG - tig0023317:46103-46122 Msa1407610:intron 30.0%
! TTTGAAGCTTCTTCATGAAA+GGG - tig0023317:46164-46183 Msa1407610:intron 30.0%
TCGGTGTAAATAATGTTAGT+AGG - tig0023317:46455-46474 Msa1407610:intron 30.0%
CTCAGTGTCTATTAATTATG+TGG - tig0023317:46598-46617 Msa1407610:intron 30.0%
AATTGCTCATTTCAAAAGTG+GGG + tig0023317:46673-46692 None:intergenic 30.0%
CAAATTGCTCATTTCAAAAG+TGG + tig0023317:46675-46694 None:intergenic 30.0%
!!! CACTTTTGAAATGAGCAATT+TGG - tig0023317:46673-46692 Msa1407610:intron 30.0%
! TTTATCTCCAAGTGTAGTTT+TGG - tig0023317:46706-46725 Msa1407610:intron 30.0%
! TTATCTCCAAGTGTAGTTTT+GGG - tig0023317:46707-46726 Msa1407610:intron 30.0%
GCTCAAAATCAAGAAGAAAT+CGG + tig0023317:46841-46860 None:intergenic 30.0%
ATGGTAACAAGCAATCAAAT+GGG - tig0023317:46984-47003 Msa1407610:intron 30.0%
GATTACACATGTCAATTAGA+GGG + tig0023317:47036-47055 None:intergenic 30.0%
TGATTACACATGTCAATTAG+AGG + tig0023317:47037-47056 None:intergenic 30.0%
! CTTTAGATTTTTCTTTGCTG+AGG - tig0023317:47231-47250 Msa1407610:CDS 30.0%
! TCAATATTTACCTTAGGTTG+TGG - tig0023317:47257-47276 Msa1407610:CDS 30.0%
CATCCATAGCAAAGTAATAA+AGG + tig0023317:47309-47328 None:intergenic 30.0%
! GATCTTTTCCTTCTTGATTA+TGG - tig0023317:47339-47358 Msa1407610:intron 30.0%
TCACAAATCCATAATCAAGA+AGG + tig0023317:47350-47369 None:intergenic 30.0%
GTATGTTTGAACACAAATTG+TGG - tig0023317:47836-47855 Msa1407610:intron 30.0%
ATTAGTATTGTCTCTTTCAC+CGG - tig0023317:48300-48319 Msa1407610:CDS 30.0%
TGAATAAGTTAAGAGGATTC+AGG + tig0023317:48334-48353 None:intergenic 30.0%
!!! TATGAAAGTTTTGGGAAGTT+GGG + tig0023317:48383-48402 None:intergenic 30.0%
!!! ATATGAAAGTTTTGGGAAGT+TGG + tig0023317:48384-48403 None:intergenic 30.0%
ATGTTATCACAAGAACCATA+AGG - tig0023317:48414-48433 Msa1407610:CDS 30.0%
AATAATAGAAGGTCGTTTGT+TGG - tig0023317:48489-48508 Msa1407610:intron 30.0%
! TCATCATCCATTAATTTGGT+GGG + tig0023317:48676-48695 None:intergenic 30.0%
! TTCATCATCCATTAATTTGG+TGG + tig0023317:48677-48696 None:intergenic 30.0%
TGATGAATCTTTATTGAAGC+AGG - tig0023317:48690-48709 Msa1407610:CDS 30.0%
GATGAATCTTTATTGAAGCA+GGG - tig0023317:48691-48710 Msa1407610:CDS 30.0%
ATGTAATGAAAAACCTCTCA+AGG - tig0023317:48776-48795 Msa1407610:CDS 30.0%
! TAAGTGACATTGAACACTTT+TGG - tig0023317:48892-48911 Msa1407610:CDS 30.0%
!! CTACTCTACTTTTCTTCACT+AGG + tig0023317:45594-45613 None:intergenic 35.0%
GAAAAGTAGAGTAGAGTGAA+AGG - tig0023317:45600-45619 Msa1407610:three_prime_UTR 35.0%
!! GAGTGAAAGGGTATTGAATT+TGG - tig0023317:45613-45632 Msa1407610:three_prime_UTR 35.0%
!! AATATGGTTATAGTTGGTGG+TGG - tig0023317:45638-45657 Msa1407610:three_prime_UTR 35.0%
ATCAAATGGGTAACAAGAGA+AGG - tig0023317:45773-45792 Msa1407610:CDS 35.0%
TCGATTCCTCAAATGGTTTA+GGG - tig0023317:45831-45850 Msa1407610:CDS 35.0%
CAATTAGGTCAGTACCAATT+GGG + tig0023317:45877-45896 None:intergenic 35.0%
! ATTTTACTTACCGGGAACAT+GGG + tig0023317:45975-45994 None:intergenic 35.0%
! AATTTTACTTACCGGGAACA+TGG + tig0023317:45976-45995 None:intergenic 35.0%
! AGCTGGTAATTTTACTTACC+GGG + tig0023317:45983-46002 None:intergenic 35.0%
! GAGCTGGTAATTTTACTTAC+CGG + tig0023317:45984-46003 None:intergenic 35.0%
GTCGTCGATGTTGAATAAAT+TGG - tig0023317:46094-46113 Msa1407610:intron 35.0%
! GTTTGAAGCTTCTTCATGAA+AGG - tig0023317:46163-46182 Msa1407610:intron 35.0%
! CAAAACTTGGATCTTTTTGG+TGG - tig0023317:46187-46206 Msa1407610:intron 35.0%
! TAGGAAGAGTGTAAGTTTGT+GGG + tig0023317:46230-46249 None:intergenic 35.0%
! ATAGGAAGAGTGTAAGTTTG+TGG + tig0023317:46231-46250 None:intergenic 35.0%
! ACTCTTCCTATTTTCTTTCC+TGG - tig0023317:46240-46259 Msa1407610:intron 35.0%
! CTCTTCCTATTTTCTTTCCT+GGG - tig0023317:46241-46260 Msa1407610:intron 35.0%
! TCTTCCTATTTTCTTTCCTG+GGG - tig0023317:46242-46261 Msa1407610:intron 35.0%
AACAGTAAGTAAAGTGTACC+TGG + tig0023317:46305-46324 None:intergenic 35.0%
! TTTACACCGAATTTTACGAC+TGG + tig0023317:46445-46464 None:intergenic 35.0%
AGATAGACAATTGTAGCTTC+TGG + tig0023317:46580-46599 None:intergenic 35.0%
ATTGCTCATTTCAAAAGTGG+GGG + tig0023317:46672-46691 None:intergenic 35.0%
ACACTTGGAGATAAACTATG+CGG + tig0023317:46701-46720 None:intergenic 35.0%
!! TATCTCCAAGTGTAGTTTTG+GGG - tig0023317:46708-46727 Msa1407610:intron 35.0%
AAATTCATGAATCACGAGAC+AGG - tig0023317:46802-46821 Msa1407610:intron 35.0%
AAAGTCAAGCATGCATTAGT+CGG - tig0023317:46863-46882 Msa1407610:intron 35.0%
!! TCAAGAGCATTCAAGTTACA+TGG - tig0023317:46965-46984 Msa1407610:intron 35.0%
CATGGTAACAAGCAATCAAA+TGG - tig0023317:46983-47002 Msa1407610:intron 35.0%
TCCAAATGCTAGAATTGTTC+AGG - tig0023317:47066-47085 Msa1407610:CDS 35.0%
TCCTGAACAATTCTAGCATT+TGG + tig0023317:47070-47089 None:intergenic 35.0%
GACCCTTTATTACTTTGCTA+TGG - tig0023317:47303-47322 Msa1407610:intron 35.0%
TGTATCGAGCTCAAATATGA+TGG - tig0023317:47390-47409 Msa1407610:intron 35.0%
!! CAAATATGATGGTGCTCTTT+TGG - tig0023317:47401-47420 Msa1407610:intron 35.0%
GGTTAATTACGTCCATTGAA+TGG - tig0023317:47713-47732 Msa1407610:CDS 35.0%
GAATATGTGTGTTTGTGTGT+TGG - tig0023317:47944-47963 Msa1407610:intron 35.0%
! TGTTTTCCCTCTGTTCATTA+AGG - tig0023317:48210-48229 Msa1407610:intron 35.0%
TTAGTATTGTCTCTTTCACC+GGG - tig0023317:48301-48320 Msa1407610:CDS 35.0%
CAAGGGTTGAATAAGTTAAG+AGG + tig0023317:48341-48360 None:intergenic 35.0%
CTCTTAACTTATTCAACCCT+TGG - tig0023317:48339-48358 Msa1407610:CDS 35.0%
CTAAAGACTTAAGTGTGTTG+AGG + tig0023317:48567-48586 None:intergenic 35.0%
ACTTAAGTCTTTAGATGCTG+AGG - tig0023317:48573-48592 Msa1407610:intron 35.0%
ACACTTTCCCACCAAATTAA+TGG - tig0023317:48666-48685 Msa1407610:CDS 35.0%
! CTTTTGGATTCTGAACTGAA+TGG + tig0023317:48740-48759 None:intergenic 35.0%
AATGAAAAACCTCTCAAGGA+AGG - tig0023317:48780-48799 Msa1407610:CDS 35.0%
GGTAAAGCTTCTTTCATCAA+AGG - tig0023317:48801-48820 Msa1407610:CDS 35.0%
!! TTATAGTTGGTGGTGGTAGT+TGG - tig0023317:45645-45664 Msa1407610:three_prime_UTR 40.0%
ATCCACACGATCTCATCAAA+TGG - tig0023317:45759-45778 Msa1407610:CDS 40.0%
TCCACACGATCTCATCAAAT+GGG - tig0023317:45760-45779 Msa1407610:CDS 40.0%
AAATGGGTAACAAGAGAAGG+TGG - tig0023317:45776-45795 Msa1407610:CDS 40.0%
CTCGATTCCTCAAATGGTTT+AGG - tig0023317:45830-45849 Msa1407610:CDS 40.0%
CACTAACCCTAAACCATTTG+AGG + tig0023317:45840-45859 None:intergenic 40.0%
! CTCAAATGGTTTAGGGTTAG+TGG - tig0023317:45838-45857 Msa1407610:CDS 40.0%
GCTAAGGAAGATATCCCAAT+TGG - tig0023317:45860-45879 Msa1407610:CDS 40.0%
GCAATTAGGTCAGTACCAAT+TGG + tig0023317:45878-45897 None:intergenic 40.0%
TGTGTTGAGGAAGAGCAATT+AGG + tig0023317:45892-45911 None:intergenic 40.0%
GAACATGGGAGGTTAATTGA+AGG + tig0023317:45961-45980 None:intergenic 40.0%
CATTCATGAGCTAATTGAGC+TGG + tig0023317:46000-46019 None:intergenic 40.0%
TTGGACAATGTGGTAGCATT+TGG - tig0023317:46113-46132 Msa1407610:intron 40.0%
AGCATTTGGCAGATGAATTG+TGG - tig0023317:46127-46146 Msa1407610:intron 40.0%
GCATTTGGCAGATGAATTGT+GGG - tig0023317:46128-46147 Msa1407610:intron 40.0%
CTTCATGAAAGGGCAAAACT+TGG - tig0023317:46174-46193 Msa1407610:intron 40.0%
! GGGCAAAACTTGGATCTTTT+TGG - tig0023317:46184-46203 Msa1407610:intron 40.0%
TGTGGGAGATTACTGATGTA+TGG + tig0023317:46213-46232 None:intergenic 40.0%
TCTTCCCCAGGAAAGAAAAT+AGG + tig0023317:46249-46268 None:intergenic 40.0%
AAATTCTTGATGTCTTCCCC+AGG + tig0023317:46261-46280 None:intergenic 40.0%
AAGTGTACCTGGTGAAGAAT+AGG + tig0023317:46294-46313 None:intergenic 40.0%
ACAATTGTAGCTTCTGGTGT+TGG + tig0023317:46574-46593 None:intergenic 40.0%
! GAGATGAAGCATCTACTTCT+TGG + tig0023317:46919-46938 None:intergenic 40.0%
GAAGTAGATGCTTCATCTCT+TGG - tig0023317:46920-46939 Msa1407610:intron 40.0%
TAGATGCTTCATCTCTTGGA+TGG - tig0023317:46924-46943 Msa1407610:intron 40.0%
AGATGCTTCATCTCTTGGAT+GGG - tig0023317:46925-46944 Msa1407610:intron 40.0%
!! TCAATTAGAGGGAGCATCAT+GGG + tig0023317:47025-47044 None:intergenic 40.0%
ATTGTTCAGGAACAAGAAGC+CGG - tig0023317:47079-47098 Msa1407610:CDS 40.0%
TGAGCTCGATACAGTCATAA+GGG + tig0023317:47383-47402 None:intergenic 40.0%
TTGAGCTCGATACAGTCATA+AGG + tig0023317:47384-47403 None:intergenic 40.0%
! ATTTGGTGAAGAAACTCCAG+CGG + tig0023317:47442-47461 None:intergenic 40.0%
GATAGAATAAGTTCCTGCCA+TGG + tig0023317:47480-47499 None:intergenic 40.0%
CTATCTCAGCTAAATCTAGC+TGG - tig0023317:47495-47514 Msa1407610:CDS 40.0%
GTTAGCGCTGTTAAAGTATG+TGG - tig0023317:47692-47711 Msa1407610:CDS 40.0%
GCTTACTGTACTTTGCAGAA+AGG - tig0023317:48125-48144 Msa1407610:intron 40.0%
TAGTATTGTCTCTTTCACCG+GGG - tig0023317:48302-48321 Msa1407610:CDS 40.0%
TTCATGTAACAGGTGAGCTT+AGG - tig0023317:48457-48476 Msa1407610:intron 40.0%
GGTGGGCAAGAAATAATAGA+AGG - tig0023317:48478-48497 Msa1407610:intron 40.0%
AGTACTCCTTGCAAGTGATA+TGG - tig0023317:48522-48541 Msa1407610:intron 40.0%
TCAAGGTACGAAATACAGCA+AGG + tig0023317:48621-48640 None:intergenic 40.0%
AATGACACACAGAGCAATCA+AGG + tig0023317:48638-48657 None:intergenic 40.0%
GCTTCTTTCATCAAAGGAGA+CGG - tig0023317:48807-48826 Msa1407610:CDS 40.0%
!! TGGTGGTGGTAGTTGGAAAA+CGG - tig0023317:45652-45671 Msa1407610:three_prime_UTR 45.0%
GATGAAGATGCGCATGTTAG+TGG + tig0023317:45713-45732 None:intergenic 45.0%
TTGATGAGATCGTGTGGATG+AGG + tig0023317:45758-45777 None:intergenic 45.0%
ACCCATTTGATGAGATCGTG+TGG + tig0023317:45764-45783 None:intergenic 45.0%
GTTGTGCTATCTTCACAGCA+CGG + tig0023317:45811-45830 None:intergenic 45.0%
GCACAACTCGATTCCTCAAA+TGG - tig0023317:45824-45843 Msa1407610:CDS 45.0%
! TGGTTTAGGGTTAGTGGCTA+AGG - tig0023317:45844-45863 Msa1407610:CDS 45.0%
AAGTGCAGAGGAATGTGTTG+AGG + tig0023317:45905-45924 None:intergenic 45.0%
TCATCATCGTTGAAGTGCAG+AGG + tig0023317:45917-45936 None:intergenic 45.0%
CATGGGAGGTTAATTGAAGG+AGG + tig0023317:45958-45977 None:intergenic 45.0%
CAATTAACCTCCCATGTTCC+CGG - tig0023317:45962-45981 Msa1407610:CDS 45.0%
TGAATTGTGGGCAATGAAGC+TGG - tig0023317:46140-46159 Msa1407610:intron 45.0%
GAATTGTGGGCAATGAAGCT+GGG - tig0023317:46141-46160 Msa1407610:intron 45.0%
CTATGCTCCTATTCTTCACC+AGG - tig0023317:46284-46303 Msa1407610:intron 45.0%
ATATGCACTGCAGTGAAGAG+AGG + tig0023317:46380-46399 None:intergenic 45.0%
ACATTGCTCTTGTGAGGACT+GGG + tig0023317:46495-46514 None:intergenic 45.0%
AGTTGCACATTGCTCTTGTG+AGG + tig0023317:46501-46520 None:intergenic 45.0%
!! CTGGTGTTGGTCACAAATGT+TGG + tig0023317:46561-46580 None:intergenic 45.0%
TGACACCCCAAAACTACACT+TGG + tig0023317:46716-46735 None:intergenic 45.0%
ACACCAGATATGCATCCGTT+TGG - tig0023317:46890-46909 Msa1407610:intron 45.0%
TCTACTTCTTGGCCACCAAA+CGG + tig0023317:46908-46927 None:intergenic 45.0%
!! GTCAATTAGAGGGAGCATCA+TGG + tig0023317:47026-47045 None:intergenic 45.0%
TAGCACAAAGATGTGGGTGA+AGG - tig0023317:47102-47121 Msa1407610:CDS 45.0%
TGTGGCTGAGAAAGCAATCA+AGG - tig0023317:47275-47294 Msa1407610:CDS 45.0%
GGAGCAGGTGTAGAGAAATT+TGG + tig0023317:47459-47478 None:intergenic 45.0%
ATTTCTCTACACCTGCTCCA+TGG - tig0023317:47460-47479 Msa1407610:CDS 45.0%
TGGAGAAACTCCAGATCTCA+AGG - tig0023317:47515-47534 Msa1407610:CDS 45.0%
GTGGAAGATACCTTGAGATC+TGG + tig0023317:47528-47547 None:intergenic 45.0%
GGAAGGCCTTAATGAACAGA+GGG + tig0023317:48219-48238 None:intergenic 45.0%
AGGAAGGCCTTAATGAACAG+AGG + tig0023317:48220-48239 None:intergenic 45.0%
!! GCACAACTGATTTGAGCCAA+GGG + tig0023317:48358-48377 None:intergenic 45.0%
!! AGCACAACTGATTTGAGCCA+AGG + tig0023317:48359-48378 None:intergenic 45.0%
ATGTAACAGGTGAGCTTAGG+TGG - tig0023317:48460-48479 Msa1407610:intron 45.0%
TGTAACAGGTGAGCTTAGGT+GGG - tig0023317:48461-48480 Msa1407610:intron 45.0%
CACTTGCCATATCACTTGCA+AGG + tig0023317:48531-48550 None:intergenic 45.0%
AGGTCATTTGCAACACCAAG+AGG + tig0023317:48601-48620 None:intergenic 45.0%
! TTATTGAAGCAGGGTGCTTC+AGG - tig0023317:48700-48719 Msa1407610:CDS 45.0%
GAAGCTTTACCTTCCTTGAG+AGG + tig0023317:48792-48811 None:intergenic 45.0%
!! ATAAATATAAATATAACAAA+TGG - tig0023317:47739-47758 Msa1407610:intron 5.0%
TTACTTACCGGGAACATGGG+AGG + tig0023317:45972-45991 None:intergenic 50.0%
CACATTGCTCTTGTGAGGAC+TGG + tig0023317:46496-46515 None:intergenic 50.0%
TGCCTTGCGGATTTGCAGTT+TGG - tig0023317:46765-46784 Msa1407610:intron 50.0%
TGCCAAACTGCAAATCCGCA+AGG + tig0023317:46770-46789 None:intergenic 50.0%
CCACCAAACGGATGCATATC+TGG + tig0023317:46896-46915 None:intergenic 50.0%
CCAGATATGCATCCGTTTGG+TGG - tig0023317:46893-46912 Msa1407610:intron 50.0%
AAGCCGGTAGCACAAAGATG+TGG - tig0023317:47095-47114 Msa1407610:CDS 50.0%
AGCCGGTAGCACAAAGATGT+GGG - tig0023317:47096-47115 Msa1407610:CDS 50.0%
CACCCACATCTTTGTGCTAC+CGG + tig0023317:47101-47120 None:intergenic 50.0%
GTGTGTGTGTGTGTGTGTCT+GGG + tig0023317:47164-47183 None:intergenic 50.0%
TGTGTGTGTGTGTGTGTGTC+TGG + tig0023317:47165-47184 None:intergenic 50.0%
GCTTTCTCAGCCACAACCTA+AGG + tig0023317:47270-47289 None:intergenic 50.0%
! TCTTTTGGATGCTGCGAGCA+TGG - tig0023317:47416-47435 Msa1407610:intron 50.0%
ATAAGTTCCTGCCATGGAGC+AGG + tig0023317:47474-47493 None:intergenic 50.0%
! GAGGATTCAGGTTCAAACCC+CGG + tig0023317:48322-48341 None:intergenic 50.0%
TTAGATGCTGAGGCTCCTCT+TGG - tig0023317:48583-48602 Msa1407610:intron 50.0%
! GCTCTGTGTGTCATTGCACT+AGG - tig0023317:48643-48662 Msa1407610:CDS 50.0%
AAGGAGACGGTCACTACTGA+AGG - tig0023317:48820-48839 Msa1407610:CDS 50.0%
GTCTGGGAGAGGAGTCATGA+AGG + tig0023317:47148-47167 None:intergenic 55.0%
TGTGTGTGTGTGTCTGGGAG+AGG + tig0023317:47159-47178 None:intergenic 55.0%
CTCTACACCTGCTCCATGGC+AGG - tig0023317:47464-47483 Msa1407610:CDS 60.0%
GATGCTGCGAGCATGGCCGC+TGG - tig0023317:47423-47442 Msa1407610:intron 70.0%
Chromosome Type Strat End Strand Name
tig0023317 gene 45572 49008 45572 ID=Msa1407610;Name=Msa1407610
tig0023317 mRNA 45572 49008 45572 ID=Msa1407610-mRNA-1;Parent=Msa1407610;Name=Msa1407610-mRNA-1;_AED=0.01;_eAED=0.01;_QI=69|1|1|1|1|1|5|162|483
tig0023317 exon 45572 46111 45572 ID=Msa1407610-mRNA-1:exon:25162;Parent=Msa1407610-mRNA-1
tig0023317 exon 47044 47307 47044 ID=Msa1407610-mRNA-1:exon:25161;Parent=Msa1407610-mRNA-1
tig0023317 exon 47457 47756 47457 ID=Msa1407610-mRNA-1:exon:25160;Parent=Msa1407610-mRNA-1
tig0023317 exon 48275 48441 48275 ID=Msa1407610-mRNA-1:exon:25159;Parent=Msa1407610-mRNA-1
tig0023317 exon 48597 49008 48597 ID=Msa1407610-mRNA-1:exon:25158;Parent=Msa1407610-mRNA-1
tig0023317 five_prime_UTR 48940 49008 48940 ID=Msa1407610-mRNA-1:five_prime_utr;Parent=Msa1407610-mRNA-1
tig0023317 CDS 48597 48939 48597 ID=Msa1407610-mRNA-1:cds;Parent=Msa1407610-mRNA-1
tig0023317 CDS 48275 48441 48275 ID=Msa1407610-mRNA-1:cds;Parent=Msa1407610-mRNA-1
tig0023317 CDS 47457 47756 47457 ID=Msa1407610-mRNA-1:cds;Parent=Msa1407610-mRNA-1
tig0023317 CDS 47044 47307 47044 ID=Msa1407610-mRNA-1:cds;Parent=Msa1407610-mRNA-1
tig0023317 CDS 45734 46111 45734 ID=Msa1407610-mRNA-1:cds;Parent=Msa1407610-mRNA-1
tig0023317 three_prime_UTR 45572 45733 45572 ID=Msa1407610-mRNA-1:three_prime_utr;Parent=Msa1407610-mRNA-1
Gene Sequence

>Msa1407610

ATGGTTATAGTTGGTGGTGGTAGTTGGAAAACGGCGATGTTAATGTCATCGTCGTTGAGTCACGTGCGTCCACTAACATGCGCATCTTCATCTTCATCATCATCACGAGTAGCTCCTCATCCACACGATCTCATCAAATGGGTAACAAGAGAAGGTGGATTCGTTCACCGTGCTGTGAAGATAGCACAACTCGATTCCTCAAATGGTTTAGGGTTAGTGGCTAAGGAAGATATCCCAATTGGTACTGACCTAATTGCTCTTCCTCAACACATTCCTCTGCACTTCAACGATGATGATCGCAACTCTCACTCTCTCCTCCTTCAATTAACCTCCCATGTTCCCGATGAATTGTGGGCAATGAAGCTGGGTTTGAAGCTTCTTCATGAAAGGGCAAAACTTGGATCTTTTTGGTGGCCATACATCAGTAATCTCCCACAAACTTACACTCTTCCTATTTTCTTTCCTGGGGAAGACATCAAGAATTTGCACTATGCTCCTATTCTTCACCAGGTAAACAAAAGATGCCGATTTCTTCTTGATTTTGAGCAAAAAGTCAAGCATGCATTAGTCGGTCTTACACCAGATATGCATCCGTTTGGTGGCCAAGAAGTAGATGCTTCATCTCTTGGATGGGCGATGTCAGCAGTTTCATCAAGAGCATTCAAGTTACATGGTAACAAGCAATCAAATGGGATAAACTTTGACATTCCCATGATGCTCCCTCTAATTGACATGTGTAATCATAGTTTCAATCCAAATGCTAGAATTGTTCAGGAACAAGAAGCCGGTAGCACAAAGATGTGGGTGAAGGTTGTGGCTGAGAAAGCAATCAAGGAAGATGACCCTTTATTACTTTGCTATGGATGTTTAAGCAATGATCTTTTCCTTCTTGATTATGGATTTGTGATACAGTCAAACCCTTATGACTGTATCGAGCTCAAATATGATGGTGCTCTTTTGGATGCTGCGAGCATGGCCGCTGGAGTTTCTTCACCAAATTTCTCTACACCTGCTCCATGGCAGGAACTTATTCTATCTCAGCTAAATCTAGCTGGAGAAACTCCAGATCTCAAGGTGAGCTTAGGTGGGCAAGAAATAATAGAAGGTCGTTTGTTGGCTGCACTAAGAGTACTCCTTGCAAGTGATATGGCAAGTGTACAAAAGCATGACCTCAACACACTTAAGTCTTTAGATGCTGAGGCTCCTCTTGGTGTTGCAAATGACCTTGCTGTATTTCGTACCTTGATTGCTCTGTGTGTCATTGCACTAGGACACTTTCCCACCAAATTAATGGATGATGAATCTTTATTGAAGCAGGGTGCTTCAGGTTCAACAGAATTAGCCATTCAGTTCAGAATCCAAAAGAAGTCTGTAATTATAGATGTAATGAAAAACCTCTCAAGGAAGGTAAAGCTTCTTTCATCAAAGGAGACGGTCACTACTGAAGGCTAA

Protein sequence

>Msa1407610

MVIVGGGSWKTAMLMSSSLSHVRPLTCASSSSSSSRVAPHPHDLIKWVTREGGFVHRAVKIAQLDSSNGLGLVAKEDIPIGTDLIALPQHIPLHFNDDDRNSHSLLLQLTSHVPDELWAMKLGLKLLHERAKLGSFWWPYISNLPQTYTLPIFFPGEDIKNLHYAPILHQVNKRCRFLLDFEQKVKHALVGLTPDMHPFGGQEVDASSLGWAMSAVSSRAFKLHGNKQSNGINFDIPMMLPLIDMCNHSFNPNARIVQEQEAGSTKMWVKVVAEKAIKEDDPLLLCYGCLSNDLFLLDYGFVIQSNPYDCIELKYDGALLDAASMAAGVSSPNFSTPAPWQELILSQLNLAGETPDLKVSLGGQEIIEGRLLAALRVLLASDMASVQKHDLNTLKSLDAEAPLGVANDLAVFRTLIALCVIALGHFPTKLMDDESLLKQGASGSTELAIQFRIQKKSVIIDVMKNLSRKVKLLSSKETVTTEG*