AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0093830


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0093830 MtrunA17_Chr2g0334101 95.487 421 12 3 1 417 1 418 0.0 820
Msa0093830 MtrunA17_Chr3g0112121 49.422 346 161 9 74 413 82 419 8.08e-110 330
Msa0093830 MtrunA17_Chr4g0009431 54.110 292 127 6 122 412 134 419 8.20e-110 331
Msa0093830 MtrunA17_Chr5g0435631 48.555 346 164 9 74 413 82 419 1.64e-107 325
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0093830 AT1G73110.1 77.225 382 87 0 36 417 51 432 0.0 635
Msa0093830 AT1G73110.2 78.302 318 69 0 100 417 18 335 0.0 539
Msa0093830 AT2G39730.2 47.246 345 168 9 74 412 81 417 2.18e-103 314
Msa0093830 AT2G39730.3 47.246 345 168 9 74 412 81 417 2.61e-103 313
Msa0093830 AT2G39730.1 47.246 345 168 9 74 412 81 417 6.25e-103 314

Find 96 sgRNAs with CRISPR-Local

Find 372 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTCCTTTGATTCTTGGTATT+TGG 0.110335 1_2:+76851326 Msa0093830:CDS
TTACACATTTACACTGTTAT+TGG 0.152036 1_2:-76856314 None:intergenic
TCCTTTGATTCTTGGTATTT+GGG 0.170575 1_2:+76851327 Msa0093830:CDS
GCTAAAGTTCCTTTGATTCT+TGG 0.197912 1_2:+76851319 Msa0093830:CDS
TCATTTCCTGTTACAATGAT+TGG 0.261969 1_2:-76852128 None:intergenic
TCTTAGTGGGTTGATGATAT+TGG 0.294945 1_2:+76854658 Msa0093830:intron
AATGGAAAATGATTAGGATT+TGG 0.320640 1_2:+76850818 Msa0093830:five_prime_UTR
CGCTCACGAATCAATCTTCC+AGG 0.332433 1_2:-76851460 None:intergenic
TGACCAATACTAACTCTTGT+AGG 0.349127 1_2:-76852071 None:intergenic
AGCAGCTTCGCCATCAGTTC+AGG 0.353117 1_2:-76850875 None:intergenic
AGAATTCCAATCATTGTAAC+AGG 0.372987 1_2:+76852122 Msa0093830:CDS
TCTGAAAATGCTGGTGAGCC+TGG 0.386060 1_2:+76851442 Msa0093830:CDS
CAAAGAACAACAGTTGATAA+TGG 0.386217 1_2:+76856068 Msa0093830:CDS
ATCATTGACGATGTCTTTGC+CGG 0.392037 1_2:+76851139 Msa0093830:CDS
ATAAGGAATGGAAAATGATT+AGG 0.394734 1_2:+76850812 Msa0093830:five_prime_UTR
CAATATTCAGTATATCTTCC+TGG 0.396347 1_2:-76852508 None:intergenic
TGTAAATGTGTAATGATATC+TGG 0.398904 1_2:+76856324 Msa0093830:three_prime_UTR
GAATAAATACAGGAAGATTC+TGG 0.403777 1_2:-76854726 None:intergenic
GTTATCAGAGCAATCTTCTT+GGG 0.408586 1_2:+76851027 Msa0093830:CDS
GCAATCTTCTTGGGAAACTA+AGG 0.416952 1_2:+76851036 Msa0093830:CDS
ATCGATGCTTTACTTGAGTC+AGG 0.418408 1_2:+76856033 Msa0093830:CDS
TCCCCAGCAGACATAATAAC+AGG 0.420434 1_2:-76851412 None:intergenic
CTTGGTATTTGGGGTGGTAA+AGG 0.421304 1_2:+76851337 Msa0093830:CDS
AGTTATCAGAGCAATCTTCT+TGG 0.427745 1_2:+76851026 Msa0093830:CDS
TAGAAAGCATGTTGGTTCTC+TGG 0.432494 1_2:+76856135 Msa0093830:three_prime_UTR
GTCTCTGCCGAGAAAATTGC+CGG 0.437752 1_2:-76851158 None:intergenic
GGTTGTTATGTGGCGGGGAA+TGG 0.437940 1_2:+76850839 Msa0093830:five_prime_UTR
TGTAATGATATCTGGTTCAT+TGG 0.439332 1_2:+76856332 Msa0093830:three_prime_UTR
GTCAACAATCAAATTGTTGT+TGG 0.443707 1_2:+76852023 Msa0093830:CDS
GATGCTGGTCTTGGTCGATT+TGG 0.450176 1_2:+76851796 Msa0093830:CDS
TACGAATAAGTACCTTGATT+AGG 0.450433 1_2:-76852596 None:intergenic
TCAACAATCAAATTGTTGTT+GGG 0.454211 1_2:+76852024 Msa0093830:CDS
GGATTTGGTTGTTATGTGGC+GGG 0.460930 1_2:+76850833 Msa0093830:five_prime_UTR
GAGTTAGTATTGGTCAAGAT+TGG 0.467534 1_2:+76852078 Msa0093830:CDS
TTCAGTATATCTTCCTGGTT+AGG 0.472744 1_2:-76852503 None:intergenic
TGAAGTCGCTACCTTCAATA+AGG 0.473749 1_2:+76856187 Msa0093830:three_prime_UTR
ACCTCTGGAGGAATAAATAC+AGG 0.480480 1_2:-76854736 None:intergenic
AATGACATTGATGCTGGTCT+TGG 0.482478 1_2:+76851787 Msa0093830:CDS
ATGAGAAAGATGGCATATCC+AGG 0.482603 1_2:+76852543 Msa0093830:CDS
CAATGTAATAATCTCCTTGA+AGG 0.484497 1_2:-76851231 None:intergenic
GAACCTGTTATTATGTCTGC+TGG 0.485284 1_2:+76851409 Msa0093830:CDS
AGATCATTTCAATACCTTCA+AGG 0.488011 1_2:+76851217 Msa0093830:CDS
TCAAAAGTGGACCTTATTGA+AGG 0.490483 1_2:-76856198 None:intergenic
ATCCTTCCATCACGTATCAA+TGG 0.491684 1_2:-76852170 None:intergenic
AGAAGAACCCTGTTCAAAAG+TGG 0.492603 1_2:-76856211 None:intergenic
TGAATGAGAATGAATTGGAA+TGG 0.496751 1_2:-76850925 None:intergenic
GGTTCTCTGGTGCAAGTCCA+CGG 0.503752 1_2:+76856148 Msa0093830:three_prime_UTR
AACCTGTTATTATGTCTGCT+GGG 0.507623 1_2:+76851410 Msa0093830:CDS
TGAACTTATCTTTCGTGCCA+TGG 0.507643 1_2:+76851381 Msa0093830:CDS
TTGATTCTTGGTATTTGGGG+TGG 0.509342 1_2:+76851331 Msa0093830:CDS
CAAATTTCTCAAAAGAAGAA+AGG 0.512041 1_2:+76854702 Msa0093830:CDS
GAATGAGAATGAATTGGAAT+GGG 0.517095 1_2:-76850924 None:intergenic
AGGATTTGGTTGTTATGTGG+CGG 0.519837 1_2:+76850832 Msa0093830:five_prime_UTR
ATTAGGATTTGGTTGTTATG+TGG 0.519913 1_2:+76850829 Msa0093830:five_prime_UTR
CAAAGAATGTATGAGAAAGA+TGG 0.523243 1_2:+76852533 Msa0093830:CDS
TAGCATTGAGGAGATGAGAA+AGG 0.523867 1_2:-76851300 None:intergenic
GTGGCACAGGCAGCCTAACC+AGG 0.526609 1_2:+76852490 Msa0093830:intron
CCTTTGATTCTTGGTATTTG+GGG 0.531341 1_2:+76851328 Msa0093830:CDS
ATGTGGCGGGGAATGGAAAG+AGG 0.534405 1_2:+76850846 Msa0093830:five_prime_UTR
TCCTGTATTTATTCCTCCAG+AGG 0.540010 1_2:+76854735 Msa0093830:CDS
TCAAAGGAACTTTAGCATTG+AGG 0.541401 1_2:-76851312 None:intergenic
GAACTTGAATCTGAAAATGC+TGG 0.543802 1_2:+76851433 Msa0093830:CDS
AAAGACATCGTCAATGATGC+CGG 0.544929 1_2:-76851134 None:intergenic
GAACTTATCTTTCGTGCCAT+GGG 0.546538 1_2:+76851382 Msa0093830:CDS
AAAATAGAGAAGATAAGGAA+TGG 0.546896 1_2:+76850800 None:intergenic
ATGATCAATGACATTGATGC+TGG 0.550132 1_2:+76851781 Msa0093830:CDS
GTTCTCTGGTGCAAGTCCAC+GGG 0.551256 1_2:+76856149 Msa0093830:three_prime_UTR
ATCGCCGTTGGTCAACGTGC+CGG 0.551366 1_2:+76851115 Msa0093830:CDS
GAGGAGGATTCCTGAACTGA+TGG 0.556628 1_2:+76850865 Msa0093830:exon
AATGGAAACTAAACTTTCGA+AGG 0.571792 1_2:+76856086 Msa0093830:CDS
TATGCTCCATTGATACGTGA+TGG 0.578504 1_2:+76852164 Msa0093830:CDS
AATCCTACAAGAGTTAGTAT+TGG 0.579350 1_2:+76852068 Msa0093830:CDS
ACGATAATCAAAGACAATGT+CGG 0.579999 1_2:-76851182 None:intergenic
CCCCAAATACCAAGAATCAA+AGG 0.580897 1_2:-76851328 None:intergenic
GGATGACTATTTACCTCTGG+AGG 0.584674 1_2:-76854748 None:intergenic
GAATTGGAATGGGAAGAAGT+TGG 0.585196 1_2:-76850914 None:intergenic
GATTTGGTTGTTATGTGGCG+GGG 0.588040 1_2:+76850834 Msa0093830:five_prime_UTR
ATTGATACGTGATGGAAGGA+TGG 0.589829 1_2:+76852172 Msa0093830:CDS
TGGGAAACTAAGGATTCTGA+AGG 0.591317 1_2:+76851046 Msa0093830:CDS
AAGACTAATAGAAAGCATGT+TGG 0.599434 1_2:+76856127 Msa0093830:exon
GATGCCGGCACGTTGACCAA+CGG 0.601114 1_2:-76851119 None:intergenic
AGAGACTATCTCTACAGACT+TGG 0.603878 1_2:+76851070 Msa0093830:CDS
CTAGAGAATTGCGAATGATG+TGG 0.608093 1_2:-76850953 None:intergenic
TAGTGGGTTGATGATATTGG+AGG 0.612663 1_2:+76854661 Msa0093830:intron
TTGGAATGGGAAGAAGTTGG+CGG 0.614229 1_2:-76850911 None:intergenic
ATTTGGGGTGGTAAAGGCCA+AGG 0.615673 1_2:+76851343 Msa0093830:CDS
CTCCATTGATACGTGATGGA+AGG 0.616615 1_2:+76852168 Msa0093830:CDS
AATAACAGGTTCAACTCCCA+TGG 0.625979 1_2:-76851398 None:intergenic
TGAGAAAGATGGCATATCCA+GGG 0.627342 1_2:+76852544 Msa0093830:CDS
GATAACATGAACATCGCCGT+TGG 0.627507 1_2:+76851103 Msa0093830:CDS
ACCTGTTATTATGTCTGCTG+GGG 0.629895 1_2:+76851411 Msa0093830:CDS
TGGCGGGGAATGGAAAGAGG+AGG 0.651203 1_2:+76850849 Msa0093830:five_prime_UTR
TCTGGTTCATTGGAACTGCA+TGG 0.661340 1_2:+76856342 Msa0093830:three_prime_UTR
ATTCTGGACGACTCTAGAAG+CGG 0.664921 1_2:-76851491 None:intergenic
ACAATCATACATAATTCCCG+TGG 0.683601 1_2:-76856165 None:intergenic
GGTTCATTGGAACTGCATGG+TGG 0.729140 1_2:+76856345 Msa0093830:three_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TAAAATAAAATCAAAACTAT+GGG - chr1_2:76852902-76852921 None:intergenic 10.0%
!! TTAAAATAAAATCAAAACTA+TGG - chr1_2:76852903-76852922 None:intergenic 10.0%
!!! AAAATTAGTATTTTTACATA+TGG - chr1_2:76853346-76853365 None:intergenic 10.0%
!! TAAATAAATATTAAAATGCA+AGG - chr1_2:76854271-76854290 None:intergenic 10.0%
!! TTTATTTATTTATAATAACC+AGG + chr1_2:76854283-76854302 Msa0093830:intron 10.0%
!! TTATTTATTTATAATAACCA+GGG + chr1_2:76854284-76854303 Msa0093830:intron 10.0%
!! TGGATAAAAAAAAAAAAAAA+GGG - chr1_2:76854583-76854602 None:intergenic 10.0%
!! ATGGATAAAAAAAAAAAAAA+AGG - chr1_2:76854584-76854603 None:intergenic 10.0%
!! ATATTTCATCAATATTAATT+TGG - chr1_2:76854844-76854863 None:intergenic 10.0%
!!! ATTTGATTGTATTTTAAAAA+AGG + chr1_2:76854990-76855009 Msa0093830:intron 10.0%
!!! TCATTTTCTTTTTTTATTCT+AGG + chr1_2:76852216-76852235 Msa0093830:intron 15.0%
!! TAATAAGCATAGAATAAAAT+AGG - chr1_2:76852758-76852777 None:intergenic 15.0%
!! AGATATATTAATGTAAACTA+AGG - chr1_2:76853298-76853317 None:intergenic 15.0%
!!! AAATTTGAAGCATAATAAAT+TGG + chr1_2:76854130-76854149 Msa0093830:intron 15.0%
!! TATTTATTTATAATAACCAG+GGG + chr1_2:76854285-76854304 Msa0093830:intron 15.0%
!! TAAATATAGCCAAAATTATT+AGG + chr1_2:76854923-76854942 Msa0093830:intron 15.0%
!! AAATATAGCCAAAATTATTA+GGG + chr1_2:76854924-76854943 Msa0093830:intron 15.0%
!! ATAAATAAGATTGAAATCTA+AGG + chr1_2:76855266-76855285 Msa0093830:intron 15.0%
!! TAAATAAGATTGAAATCTAA+GGG + chr1_2:76855267-76855286 Msa0093830:intron 15.0%
!!! TTTTTTGAATGAGAATGAAT+TGG - chr1_2:76850933-76850952 None:intergenic 20.0%
!! AACAAGATAAATCATGAATT+TGG - chr1_2:76851550-76851569 None:intergenic 20.0%
!!! TACTTTTCCTGTTTTAATAT+AGG + chr1_2:76851984-76852003 Msa0093830:intron 20.0%
!!! ACTTTTCCTGTTTTAATATA+GGG + chr1_2:76851985-76852004 Msa0093830:intron 20.0%
!! CCATAATTAAAATACATGAA+TGG - chr1_2:76852253-76852272 None:intergenic 20.0%
!!! CCATTCATGTATTTTAATTA+TGG + chr1_2:76852250-76852269 Msa0093830:intron 20.0%
!!! ATTGTTGGATAAAATGTTTT+AGG + chr1_2:76852290-76852309 Msa0093830:intron 20.0%
!!! ACATTTACGAAAACATTTTA+GGG - chr1_2:76852472-76852491 None:intergenic 20.0%
!!! ATATGACAGATCTATTTTAA+AGG + chr1_2:76853262-76853281 Msa0093830:CDS 20.0%
!!! AGTATTTTTACATATGGAAA+TGG - chr1_2:76853340-76853359 None:intergenic 20.0%
!!! TATGTTTGGTGAAATATTAA+TGG + chr1_2:76853383-76853402 Msa0093830:intron 20.0%
!! TTCTATAACATACTAGAATA+AGG - chr1_2:76853784-76853803 None:intergenic 20.0%
!! ATTTCATTACAAGTTACAAT+GGG - chr1_2:76854100-76854119 None:intergenic 20.0%
!! AATTTCATTACAAGTTACAA+TGG - chr1_2:76854101-76854120 None:intergenic 20.0%
!! ATATAATGGCAGAAATATAA+TGG - chr1_2:76854383-76854402 None:intergenic 20.0%
!! TAAATAAGACTGAAATCTAA+GGG - chr1_2:76855080-76855099 None:intergenic 20.0%
!! ATAAATAAGACTGAAATCTA+AGG - chr1_2:76855081-76855100 None:intergenic 20.0%
!!! TTATTGGCTAACATTAATTT+CGG - chr1_2:76855400-76855419 None:intergenic 20.0%
!!! TTATTGGCTAACATTAATTT+CGG + chr1_2:76855400-76855419 Msa0093830:intron 20.0%
!! TTATTGATATTATCATGCAA+AGG + chr1_2:76855454-76855473 Msa0093830:intron 20.0%
!! TATTGAAACTCAAAATTTGA+AGG + chr1_2:76855597-76855616 Msa0093830:intron 20.0%
!!! AAATTAGTTGCAAATGTTTT+GGG + chr1_2:76855839-76855858 Msa0093830:intron 20.0%
!!! AAATTAACTGCTTTTCTATT+TGG + chr1_2:76855996-76856015 Msa0093830:intron 20.0%
!!! TTTTGTATGTATAATTCATC+TGG + chr1_2:76856251-76856270 Msa0093830:three_prime_UTR 20.0%
! ATAAGGAATGGAAAATGATT+AGG + chr1_2:76850812-76850831 Msa0093830:five_prime_UTR 25.0%
! AATGGAAAATGATTAGGATT+TGG + chr1_2:76850818-76850837 Msa0093830:five_prime_UTR 25.0%
! GAATTTGGACATACTTAAAA+GGG - chr1_2:76851535-76851554 None:intergenic 25.0%
! TGAATTTGGACATACTTAAA+AGG - chr1_2:76851536-76851555 None:intergenic 25.0%
! TCTACATTTGCTTATATTGA+TGG + chr1_2:76851621-76851640 Msa0093830:intron 25.0%
! TTTAGCAAATTAAGGAAATG+CGG - chr1_2:76851711-76851730 None:intergenic 25.0%
!! TAAATTTGCTTTCTTGATAC+AGG + chr1_2:76851741-76851760 Msa0093830:intron 25.0%
!! AAATTTGCTTTCTTGATACA+GGG + chr1_2:76851742-76851761 Msa0093830:intron 25.0%
! TATAGTCTAATGAACGAAAA+GGG - chr1_2:76851889-76851908 None:intergenic 25.0%
! AGTATTCCCTATATTAAAAC+AGG - chr1_2:76851994-76852013 None:intergenic 25.0%
!! TCAACAATCAAATTGTTGTT+GGG + chr1_2:76852024-76852043 Msa0093830:CDS 25.0%
!! TAATTATGGTAGTTTTTGTC+AGG + chr1_2:76852264-76852283 Msa0093830:intron 25.0%
!! TGAATTTTTGCATAGTATTG+TGG + chr1_2:76852313-76852332 Msa0093830:intron 25.0%
! TGATTTCATGAAATGAAACT+AGG + chr1_2:76852429-76852448 Msa0093830:intron 25.0%
!! CACATTTACGAAAACATTTT+AGG - chr1_2:76852473-76852492 None:intergenic 25.0%
!! CTAAAATGTTTTCGTAAATG+TGG + chr1_2:76852471-76852490 Msa0093830:intron 25.0%
! AACAAGAAACAAATTGTTTC+TGG - chr1_2:76852960-76852979 None:intergenic 25.0%
!! TTTTTCTTTTGGTATTGTCT+TGG - chr1_2:76853423-76853442 None:intergenic 25.0%
! AGACAATACCAAAAGAAAAA+AGG + chr1_2:76853423-76853442 Msa0093830:intron 25.0%
! GACAATACCAAAAGAAAAAA+GGG + chr1_2:76853424-76853443 Msa0093830:intron 25.0%
!! TTTTGTTCCCTTTTTTCTTT+TGG - chr1_2:76853434-76853453 None:intergenic 25.0%
! TTATGTAGTTTAAATGCTGT+TGG + chr1_2:76853603-76853622 Msa0093830:intron 25.0%
!! ATATTTCTGCCATTATATTG+AGG + chr1_2:76854385-76854404 Msa0093830:intron 25.0%
!! TATTTCTGCCATTATATTGA+GGG + chr1_2:76854386-76854405 Msa0093830:intron 25.0%
! TTGTGCGGAAAAATTAAATA+TGG - chr1_2:76854603-76854622 None:intergenic 25.0%
!!! CTTTCTTCTTTTGAGAAATT+TGG - chr1_2:76854704-76854723 None:intergenic 25.0%
! CAAATTTCTCAAAAGAAGAA+AGG + chr1_2:76854702-76854721 Msa0093830:CDS 25.0%
!! TCAATATTAATTTGGTTGAC+AGG - chr1_2:76854836-76854855 None:intergenic 25.0%
! AAAATGCTAGATATCAAGAA+TGG + chr1_2:76855013-76855032 Msa0093830:intron 25.0%
!! TATTGGCTAACATTAATTTC+GGG - chr1_2:76855401-76855420 None:intergenic 25.0%
! ATCACAAGGTAAAATATCAT+GGG - chr1_2:76855650-76855669 None:intergenic 25.0%
! ATAACGATAAAAACATCACA+AGG - chr1_2:76855664-76855683 None:intergenic 25.0%
!! GAAATTAGTTGCAAATGTTT+TGG + chr1_2:76855838-76855857 Msa0093830:intron 25.0%
!! AATTAGTTGCAAATGTTTTG+GGG + chr1_2:76855840-76855859 Msa0093830:intron 25.0%
!! AATGTTACTCTTTAAAGACA+AGG - chr1_2:76855935-76855954 None:intergenic 25.0%
! TTACACATTTACACTGTTAT+TGG - chr1_2:76856317-76856336 None:intergenic 25.0%
! TGTAAATGTGTAATGATATC+TGG + chr1_2:76856324-76856343 Msa0093830:three_prime_UTR 25.0%
! ATTAGGATTTGGTTGTTATG+TGG + chr1_2:76850829-76850848 Msa0093830:five_prime_UTR 30.0%
GAATGAGAATGAATTGGAAT+GGG - chr1_2:76850927-76850946 None:intergenic 30.0%
TGAATGAGAATGAATTGGAA+TGG - chr1_2:76850928-76850947 None:intergenic 30.0%
ACGATAATCAAAGACAATGT+CGG - chr1_2:76851185-76851204 None:intergenic 30.0%
AGATCATTTCAATACCTTCA+AGG + chr1_2:76851217-76851236 Msa0093830:CDS 30.0%
CAATGTAATAATCTCCTTGA+AGG - chr1_2:76851234-76851253 None:intergenic 30.0%
! TTACATTGCTCCTCTTTTTA+TGG + chr1_2:76851246-76851265 Msa0093830:CDS 30.0%
ACAACTTTGTCCATAAAAAG+AGG - chr1_2:76851259-76851278 None:intergenic 30.0%
TTCCTTTGATTCTTGGTATT+TGG + chr1_2:76851326-76851345 Msa0093830:CDS 30.0%
TCCTTTGATTCTTGGTATTT+GGG + chr1_2:76851327-76851346 Msa0093830:CDS 30.0%
! CAGTTTGAAAAGTTTTACCT+TGG - chr1_2:76851363-76851382 None:intergenic 30.0%
AAAAAGTCGTAACTTGATTC+TGG - chr1_2:76851510-76851529 None:intergenic 30.0%
CAGACTACTTTAGCAAATTA+AGG - chr1_2:76851719-76851738 None:intergenic 30.0%
ATAGTCTAATGAACGAAAAG+GGG - chr1_2:76851888-76851907 None:intergenic 30.0%
CTATAGTCTAATGAACGAAA+AGG - chr1_2:76851890-76851909 None:intergenic 30.0%
! AGGAAAAGTATGTTCAGTAA+GGG - chr1_2:76851974-76851993 None:intergenic 30.0%
GTCAACAATCAAATTGTTGT+TGG + chr1_2:76852023-76852042 Msa0093830:CDS 30.0%
AATCCTACAAGAGTTAGTAT+TGG + chr1_2:76852068-76852087 Msa0093830:CDS 30.0%
AGAATTCCAATCATTGTAAC+AGG + chr1_2:76852122-76852141 Msa0093830:CDS 30.0%
TCATTTCCTGTTACAATGAT+TGG - chr1_2:76852131-76852150 None:intergenic 30.0%
! GAAGGATGGATAAATTTTAC+TGG + chr1_2:76852186-76852205 Msa0093830:CDS 30.0%
ATGAAATTTCATGATCGATG+TGG + chr1_2:76852337-76852356 Msa0093830:intron 30.0%
CAATATTCAGTATATCTTCC+TGG - chr1_2:76852511-76852530 None:intergenic 30.0%
CAAAGAATGTATGAGAAAGA+TGG + chr1_2:76852533-76852552 Msa0093830:CDS 30.0%
! GTGAAAACTTTTCCTAATCA+AGG + chr1_2:76852584-76852603 Msa0093830:CDS 30.0%
TACGAATAAGTACCTTGATT+AGG - chr1_2:76852599-76852618 None:intergenic 30.0%
CTGTTAAAACAGTAGTAAGA+AGG + chr1_2:76852658-76852677 Msa0093830:intron 30.0%
GAATGAGAGTGATAAAAGAA+GGG - chr1_2:76852807-76852826 None:intergenic 30.0%
AGAATGAGAGTGATAAAAGA+AGG - chr1_2:76852808-76852827 None:intergenic 30.0%
CTGATATCTCAGTACAAATT+TGG - chr1_2:76852861-76852880 None:intergenic 30.0%
CAAATTTGTACTGAGATATC+AGG + chr1_2:76852859-76852878 Msa0093830:intron 30.0%
!!! ACACACTCTTATTTTGATAC+CGG + chr1_2:76853202-76853221 Msa0093830:intron 30.0%
!! TTACAGTTGCTGTTTATGTT+TGG + chr1_2:76853369-76853388 Msa0093830:intron 30.0%
CTACATAATAAGTAACTGAC+AGG - chr1_2:76853591-76853610 None:intergenic 30.0%
!! CACTCAAAAGCATTACAAAA+GGG - chr1_2:76853669-76853688 None:intergenic 30.0%
!! TCACTCAAAAGCATTACAAA+AGG - chr1_2:76853670-76853689 None:intergenic 30.0%
TGAAGTGATTGTTGAGAAAA+AGG + chr1_2:76853719-76853738 Msa0093830:intron 30.0%
ATTGTTGAGAAAAAGGATCT+AGG + chr1_2:76853726-76853745 Msa0093830:intron 30.0%
TTGTTGAGAAAAAGGATCTA+GGG + chr1_2:76853727-76853746 Msa0093830:intron 30.0%
!! ACATTTGACATTTTGATCCA+TGG + chr1_2:76853966-76853985 Msa0093830:intron 30.0%
!! TTGATCCATGGTTTTTCAAA+AGG + chr1_2:76853978-76853997 Msa0093830:intron 30.0%
!! TGATCCATGGTTTTTCAAAA+GGG + chr1_2:76853979-76853998 Msa0093830:intron 30.0%
ATATAAACTGTTCTAGCACA+AGG - chr1_2:76854022-76854041 None:intergenic 30.0%
! TGTGATATTAGAGCCTTTTA+TGG - chr1_2:76854172-76854191 None:intergenic 30.0%
ATGTTGCATACATTACTACT+GGG - chr1_2:76854320-76854339 None:intergenic 30.0%
TATGTTGCATACATTACTAC+TGG - chr1_2:76854321-76854340 None:intergenic 30.0%
ATTTCTGCCATTATATTGAG+GGG + chr1_2:76854387-76854406 Msa0093830:intron 30.0%
AGCCTCTTGTGTAAAAAATA+GGG + chr1_2:76854478-76854497 Msa0093830:intron 30.0%
!!! TACCCTATTTTTTACACAAG+AGG - chr1_2:76854483-76854502 None:intergenic 30.0%
CTTGTGTAAAAAATAGGGTA+AGG + chr1_2:76854483-76854502 Msa0093830:intron 30.0%
AAAAAAAAAAAAGGGCAACC+CGG - chr1_2:76854575-76854594 None:intergenic 30.0%
GAATAAATACAGGAAGATTC+TGG - chr1_2:76854729-76854748 None:intergenic 30.0%
!! TCAAGAATGGATTTTCTTGA+TGG + chr1_2:76855026-76855045 Msa0093830:intron 30.0%
TCTTGATATATAGCATTGCT+CGG - chr1_2:76855137-76855156 None:intergenic 30.0%
! CTACGTTTGTAATTTTCCAT+TGG + chr1_2:76855478-76855497 Msa0093830:intron 30.0%
TTCATCTTCTATCTATCCAA+TGG - chr1_2:76855497-76855516 None:intergenic 30.0%
CATCACAAGGTAAAATATCA+TGG - chr1_2:76855651-76855670 None:intergenic 30.0%
!! ATTAGTTGCAAATGTTTTGG+GGG + chr1_2:76855841-76855860 Msa0093830:intron 30.0%
! CTTTAAAGACAAGGAAAAGA+AGG - chr1_2:76855926-76855945 None:intergenic 30.0%
!! TAACTGCTTTTCTATTTGGT+TGG + chr1_2:76856000-76856019 Msa0093830:intron 30.0%
!! CAAAGAACAACAGTTGATAA+TGG + chr1_2:76856068-76856087 Msa0093830:CDS 30.0%
AATGGAAACTAAACTTTCGA+AGG + chr1_2:76856086-76856105 Msa0093830:CDS 30.0%
! AAGACTAATAGAAAGCATGT+TGG + chr1_2:76856127-76856146 Msa0093830:exon 30.0%
! TGTAATGATATCTGGTTCAT+TGG + chr1_2:76856332-76856351 Msa0093830:three_prime_UTR 30.0%
AGTTATCAGAGCAATCTTCT+TGG + chr1_2:76851026-76851045 Msa0093830:CDS 35.0%
GTTATCAGAGCAATCTTCTT+GGG + chr1_2:76851027-76851046 Msa0093830:CDS 35.0%
! GAGATGAGAAAGGTAGTTTT+TGG - chr1_2:76851293-76851312 None:intergenic 35.0%
TCAAAGGAACTTTAGCATTG+AGG - chr1_2:76851315-76851334 None:intergenic 35.0%
GCTAAAGTTCCTTTGATTCT+TGG + chr1_2:76851319-76851338 Msa0093830:CDS 35.0%
CCTTTGATTCTTGGTATTTG+GGG + chr1_2:76851328-76851347 Msa0093830:CDS 35.0%
AACCTGTTATTATGTCTGCT+GGG + chr1_2:76851410-76851429 Msa0093830:CDS 35.0%
GAACTTGAATCTGAAAATGC+TGG + chr1_2:76851433-76851452 Msa0093830:CDS 35.0%
TTTGTGCATACAACATAGCT+AGG - chr1_2:76851586-76851605 None:intergenic 35.0%
! TGCTCTAGACTCAGTATAAT+GGG - chr1_2:76851664-76851683 None:intergenic 35.0%
! TTGCTCTAGACTCAGTATAA+TGG - chr1_2:76851665-76851684 None:intergenic 35.0%
TTAAGGAAATGCGGAATCAT+TGG - chr1_2:76851702-76851721 None:intergenic 35.0%
ATGATCAATGACATTGATGC+TGG + chr1_2:76851781-76851800 Msa0093830:CDS 35.0%
TAGTCTAATGAACGAAAAGG+GGG - chr1_2:76851887-76851906 None:intergenic 35.0%
! CAGGAAAAGTATGTTCAGTA+AGG - chr1_2:76851975-76851994 None:intergenic 35.0%
TGACCAATACTAACTCTTGT+AGG - chr1_2:76852074-76852093 None:intergenic 35.0%
!! GAGTTAGTATTGGTCAAGAT+TGG + chr1_2:76852078-76852097 Msa0093830:CDS 35.0%
CATTAGCAATGTGATAGATG+AGG - chr1_2:76852391-76852410 None:intergenic 35.0%
TTCAGTATATCTTCCTGGTT+AGG - chr1_2:76852506-76852525 None:intergenic 35.0%
!!! AACTTTTTCAACTTCATCCC+TGG - chr1_2:76852564-76852583 None:intergenic 35.0%
TACTTATTCGTATGCCATGT+TGG + chr1_2:76852607-76852626 Msa0093830:intron 35.0%
! AGAACTTTTCTGAACCAACA+TGG - chr1_2:76852624-76852643 None:intergenic 35.0%
!! ATAAAAGAAGGGCACTCTAA+AGG - chr1_2:76852796-76852815 None:intergenic 35.0%
TATCAGGTCTGTTCTCATTT+AGG + chr1_2:76852875-76852894 Msa0093830:intron 35.0%
!! ACAGGAGATTCTTTTGAAAG+AGG - chr1_2:76853573-76853592 None:intergenic 35.0%
CCTTCTGGGCAAAAATAAAA+TGG - chr1_2:76853694-76853713 None:intergenic 35.0%
!!! CCATTTTATTTTTGCCCAGA+AGG + chr1_2:76853691-76853710 Msa0093830:intron 35.0%
! CTTGCATTTATACAGGTTGA+GGG - chr1_2:76853759-76853778 None:intergenic 35.0%
! TAAGGTGCTTGCATTTATAC+AGG - chr1_2:76853766-76853785 None:intergenic 35.0%
AGCAACTTGAACTAGTTCAT+TGG - chr1_2:76853892-76853911 None:intergenic 35.0%
!! GTTACCCTTTTGAAAAACCA+TGG - chr1_2:76853986-76854005 None:intergenic 35.0%
! TCTAGCACAAGGAATCTTTT+CGG - chr1_2:76854011-76854030 None:intergenic 35.0%
!!! AAGCCTTTTCTAGAATGAGA+AGG - chr1_2:76854057-76854076 None:intergenic 35.0%
TCTCGACAATTGACCATAAA+AGG + chr1_2:76854156-76854175 Msa0093830:intron 35.0%
AAGGTTACCCCTCAATATAA+TGG - chr1_2:76854397-76854416 None:intergenic 35.0%
ATTATATTGAGGGGTAACCT+TGG + chr1_2:76854396-76854415 Msa0093830:intron 35.0%
TAAAGTTGTTGTCATGTGAC+TGG + chr1_2:76854428-76854447 Msa0093830:intron 35.0%
CAGCCTCTTGTGTAAAAAAT+AGG + chr1_2:76854477-76854496 Msa0093830:intron 35.0%
GCTAATGACATACAAACTTG+TGG + chr1_2:76854631-76854650 Msa0093830:intron 35.0%
AATGACATACAAACTTGTGG+TGG + chr1_2:76854634-76854653 Msa0093830:intron 35.0%
!! TCTTAGTGGGTTGATGATAT+TGG + chr1_2:76854658-76854677 Msa0093830:intron 35.0%
AAAGGATGACTATTTACCTC+TGG - chr1_2:76854754-76854773 None:intergenic 35.0%
AGCCAAAATTATTAGGGTCA+TGG + chr1_2:76854930-76854949 Msa0093830:intron 35.0%
! GACCATGACCCTAATAATTT+TGG - chr1_2:76854935-76854954 None:intergenic 35.0%
!! TGATGGATTCAAGAATGACA+TGG + chr1_2:76855043-76855062 Msa0093830:intron 35.0%
ACAAGGTAAAATATCATGGG+TGG - chr1_2:76855647-76855666 None:intergenic 35.0%
AAAAGAATTGGCATGAGAGT+CGG - chr1_2:76855729-76855748 None:intergenic 35.0%
ACAATCATACATAATTCCCG+TGG - chr1_2:76856168-76856187 None:intergenic 35.0%
TCAAAAGTGGACCTTATTGA+AGG - chr1_2:76856201-76856220 None:intergenic 35.0%
!! AATAAGGTCCACTTTTGAAC+AGG + chr1_2:76856203-76856222 Msa0093830:three_prime_UTR 35.0%
!! ATAAGGTCCACTTTTGAACA+GGG + chr1_2:76856204-76856223 Msa0093830:three_prime_UTR 35.0%
! AGGATTTGGTTGTTATGTGG+CGG + chr1_2:76850832-76850851 Msa0093830:five_prime_UTR 40.0%
GAATTGGAATGGGAAGAAGT+TGG - chr1_2:76850917-76850936 None:intergenic 40.0%
CTAGAGAATTGCGAATGATG+TGG - chr1_2:76850956-76850975 None:intergenic 40.0%
GCAATCTTCTTGGGAAACTA+AGG + chr1_2:76851036-76851055 Msa0093830:CDS 40.0%
TGGGAAACTAAGGATTCTGA+AGG + chr1_2:76851046-76851065 Msa0093830:CDS 40.0%
AGAGACTATCTCTACAGACT+TGG + chr1_2:76851070-76851089 Msa0093830:CDS 40.0%
AAAGACATCGTCAATGATGC+CGG - chr1_2:76851137-76851156 None:intergenic 40.0%
ATCATTGACGATGTCTTTGC+CGG + chr1_2:76851139-76851158 Msa0093830:CDS 40.0%
! TAGCATTGAGGAGATGAGAA+AGG - chr1_2:76851303-76851322 None:intergenic 40.0%
CCCCAAATACCAAGAATCAA+AGG - chr1_2:76851331-76851350 None:intergenic 40.0%
TTGATTCTTGGTATTTGGGG+TGG + chr1_2:76851331-76851350 Msa0093830:CDS 40.0%
TGAACTTATCTTTCGTGCCA+TGG + chr1_2:76851381-76851400 Msa0093830:CDS 40.0%
GAACTTATCTTTCGTGCCAT+GGG + chr1_2:76851382-76851401 Msa0093830:CDS 40.0%
AATAACAGGTTCAACTCCCA+TGG - chr1_2:76851401-76851420 None:intergenic 40.0%
GAACCTGTTATTATGTCTGC+TGG + chr1_2:76851409-76851428 Msa0093830:CDS 40.0%
ACCTGTTATTATGTCTGCTG+GGG + chr1_2:76851411-76851430 Msa0093830:CDS 40.0%
! ACTCAGTATAATGGGAGCAT+TGG - chr1_2:76851656-76851675 None:intergenic 40.0%
! AATGACATTGATGCTGGTCT+TGG + chr1_2:76851787-76851806 Msa0093830:CDS 40.0%
AATGAACGAAAAGGGGGATA+TGG - chr1_2:76851881-76851900 None:intergenic 40.0%
CTCCTAGTGTTTCAGTTACT+TGG + chr1_2:76851937-76851956 Msa0093830:intron 40.0%
GACCAAGTAACTGAAACACT+AGG - chr1_2:76851942-76851961 None:intergenic 40.0%
TGTTTCAGTTACTTGGTCAG+CGG + chr1_2:76851944-76851963 Msa0093830:intron 40.0%
TATGCTCCATTGATACGTGA+TGG + chr1_2:76852164-76852183 Msa0093830:CDS 40.0%
ATCCTTCCATCACGTATCAA+TGG - chr1_2:76852173-76852192 None:intergenic 40.0%
! ATTGATACGTGATGGAAGGA+TGG + chr1_2:76852172-76852191 Msa0093830:CDS 40.0%
! GTTTTTGTCAGGTGCATTGT+TGG + chr1_2:76852275-76852294 Msa0093830:intron 40.0%
! TGTTTTCGTAAATGTGGCAC+AGG + chr1_2:76852477-76852496 Msa0093830:intron 40.0%
ATGAGAAAGATGGCATATCC+AGG + chr1_2:76852543-76852562 Msa0093830:CDS 40.0%
TGAGAAAGATGGCATATCCA+GGG + chr1_2:76852544-76852563 Msa0093830:CDS 40.0%
CAGTACAAATTTGGCAAACG+AGG - chr1_2:76852852-76852871 None:intergenic 40.0%
!!! TATTTTGATACCGGCAGCAT+TGG + chr1_2:76853211-76853230 Msa0093830:intron 40.0%
ATCGCCTGAGATACTTTGTA+GGG + chr1_2:76853528-76853547 Msa0093830:intron 40.0%
! TACACCCTACAAAGTATCTC+AGG - chr1_2:76853535-76853554 None:intergenic 40.0%
TGAGATACTTTGTAGGGTGT+AGG + chr1_2:76853534-76853553 Msa0093830:intron 40.0%
GAGATACTTTGTAGGGTGTA+GGG + chr1_2:76853535-76853554 Msa0093830:intron 40.0%
!! CAAAAGCATTACAAAAGGGC+AGG - chr1_2:76853665-76853684 None:intergenic 40.0%
GCTTGCATTTATACAGGTTG+AGG - chr1_2:76853760-76853779 None:intergenic 40.0%
GTGCATACTGGATAGTTGAT+AGG - chr1_2:76853847-76853866 None:intergenic 40.0%
TCCAGTATGCACAAAGAAGT+TGG + chr1_2:76853855-76853874 Msa0093830:intron 40.0%
CTAGAATGAGAAGGCTGTAT+TGG - chr1_2:76854048-76854067 None:intergenic 40.0%
! CAGCCTTCTCATTCTAGAAA+AGG + chr1_2:76854051-76854070 Msa0093830:intron 40.0%
AATTTACACATTCAGCCTCC+TGG - chr1_2:76854241-76854260 None:intergenic 40.0%
CGTACAATACACCAAATGGT+GGG + chr1_2:76854509-76854528 Msa0093830:intron 40.0%
CATTAGCAGCAATCTTTGTG+CGG - chr1_2:76854618-76854637 None:intergenic 40.0%
!! AAACTTGTGGTGGATCTTAG+TGG + chr1_2:76854644-76854663 Msa0093830:intron 40.0%
!! AACTTGTGGTGGATCTTAGT+GGG + chr1_2:76854645-76854664 Msa0093830:intron 40.0%
!! TAGTGGGTTGATGATATTGG+AGG + chr1_2:76854661-76854680 Msa0093830:intron 40.0%
TCCTGTATTTATTCCTCCAG+AGG + chr1_2:76854735-76854754 Msa0093830:CDS 40.0%
! ACCTCTGGAGGAATAAATAC+AGG - chr1_2:76854739-76854758 None:intergenic 40.0%
CAGAACAGAACAGGAGAAAA+AGG - chr1_2:76854772-76854791 None:intergenic 40.0%
GTAGGCTAACTGATGGTAAT+TGG + chr1_2:76854804-76854823 Msa0093830:intron 40.0%
GATATATAGCATTGCTCGGT+GGG - chr1_2:76855133-76855152 None:intergenic 40.0%
TGATATATAGCATTGCTCGG+TGG - chr1_2:76855134-76855153 None:intergenic 40.0%
TAGCCAATAAAATCTCAGCC+TGG + chr1_2:76855192-76855211 Msa0093830:intron 40.0%
TAGCCAATAAAATCTCAGCC+TGG - chr1_2:76855192-76855211 None:intergenic 40.0%
ATCGTTATCTCTCTTGCACT+TGG + chr1_2:76855676-76855695 Msa0093830:intron 40.0%
! TCTCATGCCAATTCTTTTGC+TGG + chr1_2:76855731-76855750 Msa0093830:intron 40.0%
ATGTTGGCCAGCAAAAGAAT+TGG - chr1_2:76855741-76855760 None:intergenic 40.0%
! TTCTTTTGCTGGCCAACATT+TGG + chr1_2:76855742-76855761 Msa0093830:intron 40.0%
! TCTTTTGCTGGCCAACATTT+GGG + chr1_2:76855743-76855762 Msa0093830:intron 40.0%
ATGTGTCTAACATAGCAGAC+AGG - chr1_2:76855772-76855791 None:intergenic 40.0%
ATCGATGCTTTACTTGAGTC+AGG + chr1_2:76856033-76856052 Msa0093830:CDS 40.0%
!! TAGAAAGCATGTTGGTTCTC+TGG + chr1_2:76856135-76856154 Msa0093830:three_prime_UTR 40.0%
TGAAGTCGCTACCTTCAATA+AGG + chr1_2:76856187-76856206 Msa0093830:three_prime_UTR 40.0%
AGAAGAACCCTGTTCAAAAG+TGG - chr1_2:76856214-76856233 None:intergenic 40.0%
! GGATTTGGTTGTTATGTGGC+GGG + chr1_2:76850833-76850852 Msa0093830:five_prime_UTR 45.0%
! GATTTGGTTGTTATGTGGCG+GGG + chr1_2:76850834-76850853 Msa0093830:five_prime_UTR 45.0%
TTGGAATGGGAAGAAGTTGG+CGG - chr1_2:76850914-76850933 None:intergenic 45.0%
GATAACATGAACATCGCCGT+TGG + chr1_2:76851103-76851122 Msa0093830:CDS 45.0%
! GTCTTTGCCGGCAATTTTCT+CGG + chr1_2:76851151-76851170 Msa0093830:CDS 45.0%
! CTTGGTATTTGGGGTGGTAA+AGG + chr1_2:76851337-76851356 Msa0093830:CDS 45.0%
TCCCCAGCAGACATAATAAC+AGG - chr1_2:76851415-76851434 None:intergenic 45.0%
! ATTCTGGACGACTCTAGAAG+CGG - chr1_2:76851494-76851513 None:intergenic 45.0%
GTGCATACAACATAGCTAGG+TGG - chr1_2:76851583-76851602 None:intergenic 45.0%
! CTCCATTGATACGTGATGGA+AGG + chr1_2:76852168-76852187 Msa0093830:CDS 45.0%
!!! CTTATTTTGCGTCGCTTCTG+AGG - chr1_2:76853033-76853052 None:intergenic 45.0%
! AACAACCAAGTCTTATCCCC+AGG - chr1_2:76853084-76853103 None:intergenic 45.0%
CCATAAAAGTCCAATGCTGC+CGG - chr1_2:76853224-76853243 None:intergenic 45.0%
! CTACAAAGTATCTCAGGCGA+TGG - chr1_2:76853529-76853548 None:intergenic 45.0%
CATCGCCTGAGATACTTTGT+AGG + chr1_2:76853527-76853546 Msa0093830:intron 45.0%
CATTACAAAAGGGCAGGACT+AGG - chr1_2:76853659-76853678 None:intergenic 45.0%
ATCACTTCACAACGCCTTCT+GGG - chr1_2:76853708-76853727 None:intergenic 45.0%
AATCACTTCACAACGCCTTC+TGG - chr1_2:76853709-76853728 None:intergenic 45.0%
GCCAACTTCTTTGTGCATAC+TGG - chr1_2:76853859-76853878 None:intergenic 45.0%
GTATGCACAAAGAAGTTGGC+AGG + chr1_2:76853859-76853878 Msa0093830:intron 45.0%
GAAAGCCACCATCAAACACT+GGG - chr1_2:76853933-76853952 None:intergenic 45.0%
AGAAAGCCACCATCAAACAC+TGG - chr1_2:76853934-76853953 None:intergenic 45.0%
GTTGTTGTCATGTGACTGGA+AGG + chr1_2:76854432-76854451 Msa0093830:intron 45.0%
! TTACACAAGAGGCTGTTTCC+AGG - chr1_2:76854472-76854491 None:intergenic 45.0%
GCTGCGTACAATACACCAAA+TGG + chr1_2:76854505-76854524 Msa0093830:intron 45.0%
GCGTACAATACACCAAATGG+TGG + chr1_2:76854508-76854527 Msa0093830:intron 45.0%
GGATGACTATTTACCTCTGG+AGG - chr1_2:76854751-76854770 None:intergenic 45.0%
ACAACAGGACAGAACAGAAC+AGG - chr1_2:76854781-76854800 None:intergenic 45.0%
TTCTGTTCTGTCCTGTTGTG+TGG + chr1_2:76854782-76854801 Msa0093830:intron 45.0%
TTGTGTGGTAGGCTAACTGA+TGG + chr1_2:76854797-76854816 Msa0093830:intron 45.0%
CAATAAAATCTCAGCCTGGC+CGG + chr1_2:76855196-76855215 Msa0093830:intron 45.0%
TCAGCCTGGCTGAAAATCAT+GGG - chr1_2:76855376-76855395 None:intergenic 45.0%
! CAGCCAGGCTGAGATTTTAT+TGG + chr1_2:76855384-76855403 Msa0093830:intron 45.0%
CAGACAGGATACCCAAATGT+TGG - chr1_2:76855757-76855776 None:intergenic 45.0%
!!! AGTTGCAAATGTTTTGGGGG+AGG + chr1_2:76855844-76855863 Msa0093830:intron 45.0%
! TCTGGTTCATTGGAACTGCA+TGG + chr1_2:76856342-76856361 Msa0093830:three_prime_UTR 45.0%
GAGGAGGATTCCTGAACTGA+TGG + chr1_2:76850865-76850884 Msa0093830:exon 50.0%
GTCTCTGCCGAGAAAATTGC+CGG - chr1_2:76851161-76851180 None:intergenic 50.0%
! ATTTGGGGTGGTAAAGGCCA+AGG + chr1_2:76851343-76851362 Msa0093830:CDS 50.0%
TCTGAAAATGCTGGTGAGCC+TGG + chr1_2:76851442-76851461 Msa0093830:CDS 50.0%
CGCTCACGAATCAATCTTCC+AGG - chr1_2:76851463-76851482 None:intergenic 50.0%
!! GATGCTGGTCTTGGTCGATT+TGG + chr1_2:76851796-76851815 Msa0093830:CDS 50.0%
! ACCAAGTCTTATCCCCAGGT+GGG - chr1_2:76853080-76853099 None:intergenic 50.0%
! AACCAAGTCTTATCCCCAGG+TGG - chr1_2:76853081-76853100 None:intergenic 50.0%
!! CCGGCAGCATTGGACTTTTA+TGG + chr1_2:76853221-76853240 Msa0093830:intron 50.0%
TACTTTGTAGGGTGTAGGGC+TGG + chr1_2:76853539-76853558 Msa0093830:intron 50.0%
ATCAAACACTGGGCAGCATC+GGG - chr1_2:76853923-76853942 None:intergenic 50.0%
CATCAAACACTGGGCAGCAT+CGG - chr1_2:76853924-76853943 None:intergenic 50.0%
AGAGAGAACCCTGAATGCAG+TGG + chr1_2:76854210-76854229 Msa0093830:intron 50.0%
TGGATACGCCACTGCATTCA+GGG - chr1_2:76854221-76854240 None:intergenic 50.0%
TACTGGGAAACACATTCCCC+TGG - chr1_2:76854304-76854323 None:intergenic 50.0%
CAACTTTACCAGTTGCGCCA+AGG - chr1_2:76854416-76854435 None:intergenic 50.0%
GTCATGTGACTGGAAGGTCA+CGG + chr1_2:76854438-76854457 Msa0093830:intron 50.0%
TCATGTGACTGGAAGGTCAC+GGG + chr1_2:76854439-76854458 Msa0093830:intron 50.0%
CTAAAGCTCCCGCATATGCA+GGG - chr1_2:76854548-76854567 None:intergenic 50.0%
ACTAAAGCTCCCGCATATGC+AGG - chr1_2:76854549-76854568 None:intergenic 50.0%
GTTCTGTCCTGTTGTGTGGT+AGG + chr1_2:76854786-76854805 Msa0093830:intron 50.0%
! CAGTTAGCCTACCACACAAC+AGG - chr1_2:76854796-76854815 None:intergenic 50.0%
! CGGCCAGGCTGAGATTTTAT+TGG - chr1_2:76855198-76855217 None:intergenic 50.0%
!! AAATCATGGGGTGGTGGGTA+CGG - chr1_2:76855363-76855382 None:intergenic 50.0%
GCTGAAAATCATGGGGTGGT+GGG - chr1_2:76855368-76855387 None:intergenic 50.0%
CAGCCTGGCTGAAAATCATG+GGG - chr1_2:76855375-76855394 None:intergenic 50.0%
CTCAGCCTGGCTGAAAATCA+TGG - chr1_2:76855377-76855396 None:intergenic 50.0%
GGTTCATTGGAACTGCATGG+TGG + chr1_2:76856345-76856364 Msa0093830:three_prime_UTR 50.0%
! GGTTGTTATGTGGCGGGGAA+TGG + chr1_2:76850839-76850858 Msa0093830:five_prime_UTR 55.0%
! ATGTGGCGGGGAATGGAAAG+AGG + chr1_2:76850846-76850865 Msa0093830:five_prime_UTR 55.0%
AGCAGCTTCGCCATCAGTTC+AGG - chr1_2:76850878-76850897 None:intergenic 55.0%
! CCAAGTCTTATCCCCAGGTG+GGG - chr1_2:76853079-76853098 None:intergenic 55.0%
CAAAAGGGCAGGACTAGGAG+TGG - chr1_2:76853654-76853673 None:intergenic 55.0%
TCAAACACTGGGCAGCATCG+GGG - chr1_2:76853922-76853941 None:intergenic 55.0%
CGATGCTGCCCAGTGTTTGA+TGG + chr1_2:76853922-76853941 Msa0093830:intron 55.0%
TGCTGCCCAGTGTTTGATGG+TGG + chr1_2:76853925-76853944 Msa0093830:intron 55.0%
CTGGATACGCCACTGCATTC+AGG - chr1_2:76854222-76854241 None:intergenic 55.0%
CTGAATGCAGTGGCGTATCC+AGG + chr1_2:76854220-76854239 Msa0093830:intron 55.0%
AATGCAGTGGCGTATCCAGG+AGG + chr1_2:76854223-76854242 Msa0093830:intron 55.0%
AAGGTCACGGGTTCAAGTCC+TGG + chr1_2:76854451-76854470 Msa0093830:intron 55.0%
! ATGCGGGAGCTTTAGTGCAC+CGG + chr1_2:76854553-76854572 Msa0093830:intron 55.0%
TCAGCCTGGCCGGAAATCAT+GGG + chr1_2:76855206-76855225 Msa0093830:intron 55.0%
ACCCACCACCCCATGATTTC+CGG - chr1_2:76855218-76855237 None:intergenic 55.0%
GGCTGAAAATCATGGGGTGG+TGG - chr1_2:76855369-76855388 None:intergenic 55.0%
CCTGGCTGAAAATCATGGGG+TGG - chr1_2:76855372-76855391 None:intergenic 55.0%
! CCACCCCATGATTTTCAGCC+AGG + chr1_2:76855369-76855388 Msa0093830:intron 55.0%
GGTTCTCTGGTGCAAGTCCA+CGG + chr1_2:76856148-76856167 Msa0093830:three_prime_UTR 55.0%
GTTCTCTGGTGCAAGTCCAC+GGG + chr1_2:76856149-76856168 Msa0093830:three_prime_UTR 55.0%
TGGCGGGGAATGGAAAGAGG+AGG + chr1_2:76850849-76850868 Msa0093830:five_prime_UTR 60.0%
ATCGCCGTTGGTCAACGTGC+CGG + chr1_2:76851115-76851134 Msa0093830:CDS 60.0%
GATGCCGGCACGTTGACCAA+CGG - chr1_2:76851122-76851141 None:intergenic 60.0%
GTCTTATCCCCAGGTGGGGT+CGG - chr1_2:76853075-76853094 None:intergenic 60.0%
CCCCACCTGGGGATAAGACT+TGG + chr1_2:76853076-76853095 Msa0093830:intron 60.0%
AGGGGTAACCTTGGCGCAAC+TGG + chr1_2:76854405-76854424 Msa0093830:intron 60.0%
! CAAATGGTGGGACCCCTTCC+CGG + chr1_2:76854521-76854540 Msa0093830:intron 60.0%
CATATGCAGGGTCCGGGAAG+GGG - chr1_2:76854536-76854555 None:intergenic 60.0%
GCATATGCAGGGTCCGGGAA+GGG - chr1_2:76854537-76854556 None:intergenic 60.0%
CTTCCCGGACCCTGCATATG+CGG + chr1_2:76854536-76854555 Msa0093830:intron 60.0%
TTCCCGGACCCTGCATATGC+GGG + chr1_2:76854537-76854556 Msa0093830:intron 60.0%
! TGCGGGAGCTTTAGTGCACC+GGG + chr1_2:76854554-76854573 Msa0093830:intron 60.0%
CTCAGCCTGGCCGGAAATCA+TGG + chr1_2:76855205-76855224 Msa0093830:intron 60.0%
CAGCCTGGCCGGAAATCATG+GGG + chr1_2:76855207-76855226 Msa0093830:intron 60.0%
GCCGGAAATCATGGGGTGGT+GGG + chr1_2:76855214-76855233 Msa0093830:intron 60.0%
!! TGGGGTGGTGGGTACGGAAA+AGG - chr1_2:76855357-76855376 None:intergenic 60.0%
GTGGCACAGGCAGCCTAACC+AGG + chr1_2:76852490-76852509 Msa0093830:intron 65.0%
TCCATGTAGCCGACCCCACC+TGG + chr1_2:76853063-76853082 Msa0093830:intron 65.0%
CCATGTAGCCGACCCCACCT+GGG + chr1_2:76853064-76853083 Msa0093830:intron 65.0%
CATGTAGCCGACCCCACCTG+GGG + chr1_2:76853065-76853084 Msa0093830:intron 65.0%
CGGGAAGGGGTCCCACCATT+TGG - chr1_2:76854523-76854542 None:intergenic 65.0%
CGCATATGCAGGGTCCGGGA+AGG - chr1_2:76854538-76854557 None:intergenic 65.0%
CTCCCGCATATGCAGGGTCC+GGG - chr1_2:76854542-76854561 None:intergenic 65.0%
GCTCCCGCATATGCAGGGTC+CGG - chr1_2:76854543-76854562 None:intergenic 65.0%
CCACCCCATGATTTCCGGCC+AGG - chr1_2:76855213-76855232 None:intergenic 65.0%
CCTGGCCGGAAATCATGGGG+TGG + chr1_2:76855210-76855229 Msa0093830:intron 65.0%
GGCCGGAAATCATGGGGTGG+TGG + chr1_2:76855213-76855232 Msa0093830:intron 65.0%
CCCAGGTGGGGTCGGCTACA+TGG - chr1_2:76853067-76853086 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr1_2 gene 76850808 76856396 76850808 ID=Msa0093830;Name=Msa0093830
chr1_2 mRNA 76850808 76856396 76850808 ID=Msa0093830-mRNA-1;Parent=Msa0093830;Name=Msa0093830-mRNA-1;_AED=0.05;_eAED=0.05;_QI=76|1|1|1|1|1|7|262|417
chr1_2 exon 76850808 76851516 76850808 ID=Msa0093830-mRNA-1:exon:27133;Parent=Msa0093830-mRNA-1
chr1_2 exon 76851763 76851817 76851763 ID=Msa0093830-mRNA-1:exon:27134;Parent=Msa0093830-mRNA-1
chr1_2 exon 76852006 76852207 76852006 ID=Msa0093830-mRNA-1:exon:27135;Parent=Msa0093830-mRNA-1
chr1_2 exon 76852499 76852605 76852499 ID=Msa0093830-mRNA-1:exon:27136;Parent=Msa0093830-mRNA-1
chr1_2 exon 76853228 76853283 76853228 ID=Msa0093830-mRNA-1:exon:27137;Parent=Msa0093830-mRNA-1
chr1_2 exon 76854664 76854756 76854664 ID=Msa0093830-mRNA-1:exon:27138;Parent=Msa0093830-mRNA-1
chr1_2 exon 76856027 76856396 76856027 ID=Msa0093830-mRNA-1:exon:27139;Parent=Msa0093830-mRNA-1
chr1_2 five_prime_UTR 76850808 76850883 76850808 ID=Msa0093830-mRNA-1:five_prime_utr;Parent=Msa0093830-mRNA-1
chr1_2 CDS 76850884 76851516 76850884 ID=Msa0093830-mRNA-1:cds;Parent=Msa0093830-mRNA-1
chr1_2 CDS 76851763 76851817 76851763 ID=Msa0093830-mRNA-1:cds;Parent=Msa0093830-mRNA-1
chr1_2 CDS 76852006 76852207 76852006 ID=Msa0093830-mRNA-1:cds;Parent=Msa0093830-mRNA-1
chr1_2 CDS 76852499 76852605 76852499 ID=Msa0093830-mRNA-1:cds;Parent=Msa0093830-mRNA-1
chr1_2 CDS 76853228 76853283 76853228 ID=Msa0093830-mRNA-1:cds;Parent=Msa0093830-mRNA-1
chr1_2 CDS 76854664 76854756 76854664 ID=Msa0093830-mRNA-1:cds;Parent=Msa0093830-mRNA-1
chr1_2 CDS 76856027 76856134 76856027 ID=Msa0093830-mRNA-1:cds;Parent=Msa0093830-mRNA-1
chr1_2 three_prime_UTR 76856135 76856396 76856135 ID=Msa0093830-mRNA-1:three_prime_utr;Parent=Msa0093830-mRNA-1
Gene Sequence

>Msa0093830

ATGGCGAAGCTGCTATTACTTCTACGACCGCCAACTTCTTCCCATTCCAATTCATTCTCATTCAAAAAACCACATCATTCGCAATTCTCTAGCTGTGTTCGCTGCTGCAGTACTAGTGATGATGATGAAAAGAACAAGAAGAAGTTATCAGAGCAATCTTCTTGGGAAACTAAGGATTCTGAAGGAAGAGACTATCTCTACAGACTTGGCGCTGAAGCTGATAACATGAACATCGCCGTTGGTCAACGTGCCGGCATCATTGACGATGTCTTTGCCGGCAATTTTCTCGGCAGAGACTCCGACATTGTCTTTGATTATCGTCAGAAAGTCACTAGATCATTTCAATACCTTCAAGGAGATTATTACATTGCTCCTCTTTTTATGGACAAAGTTGTTACTCACATTACCAAAAACTACCTTTCTCATCTCCTCAATGCTAAAGTTCCTTTGATTCTTGGTATTTGGGGTGGTAAAGGCCAAGGTAAAACTTTTCAAACTGAACTTATCTTTCGTGCCATGGGAGTTGAACCTGTTATTATGTCTGCTGGGGAACTTGAATCTGAAAATGCTGGTGAGCCTGGAAGATTGATTCGTGAGCGCTACAGAACCGCTTCTAGAGTCGTCCAGAATCAAGGAAAGATGAGCTGTTTAATGATCAATGACATTGATGCTGGTCTTGGTCGATTTGGGAATACTCAAATGACAGTCAACAATCAAATTGTTGTTGGGACTCTTATGAATCTATGTGACAATCCTACAAGAGTTAGTATTGGTCAAGATTGGCGAGAAGCAGATGTCACAAACAGAATTCCAATCATTGTAACAGGAAATGATCTTTCAACTATTTATGCTCCATTGATACGTGATGGAAGGATGGATAAATTTTACTGGCAGCCTAACCAGGAAGATATACTGAATATTGTTCAAAGAATGTATGAGAAAGATGGCATATCCAGGGATGAAGTTGAAAAAGTTGTGAAAACTTTTCCTAATCAAGCATTGGACTTTTATGGAGCTCTAAGATCGCGTACATATGACAGATCTATTTTAAAGTGGGTTGATGATATTGGAGGTGCTGAAAGTTTTGCATCCAAATTTCTCAAAAGAAGAAAGGACCAGAATCTTCCTGTATTTATTCCTCCAGAGCAAACGATCGATGCTTTACTTGAGTCAGGTTATTCTCTGCTCAAAGAACAACAGTTGATAATGGAAACTAAACTTTCGAAGGAATACATGAAGAACATTGAAGACTAA

Protein sequence

>Msa0093830

MAKLLLLLRPPTSSHSNSFSFKKPHHSQFSSCVRCCSTSDDDEKNKKKLSEQSSWETKDSEGRDYLYRLGAEADNMNIAVGQRAGIIDDVFAGNFLGRDSDIVFDYRQKVTRSFQYLQGDYYIAPLFMDKVVTHITKNYLSHLLNAKVPLILGIWGGKGQGKTFQTELIFRAMGVEPVIMSAGELESENAGEPGRLIRERYRTASRVVQNQGKMSCLMINDIDAGLGRFGNTQMTVNNQIVVGTLMNLCDNPTRVSIGQDWREADVTNRIPIIVTGNDLSTIYAPLIRDGRMDKFYWQPNQEDILNIVQRMYEKDGISRDEVEKVVKTFPNQALDFYGALRSRTYDRSILKWVDDIGGAESFASKFLKRRKDQNLPVFIPPEQTIDALLESGYSLLKEQQLIMETKLSKEYMKNIED*