AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0083570


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0083570 MtrunA17_Chr1g0197371 93.202 456 12 3 1 456 1 437 0.0 866
Msa0083570 MtrunA17_Chr8g0334691 40.187 321 167 6 114 430 2 301 1.09e-65 213
Msa0083570 MtrunA17_Chr1g0187751 37.931 348 190 6 92 435 3 328 2.72e-65 213
Msa0083570 MtrunA17_Chr1g0167651 37.356 348 192 6 92 435 3 328 1.07e-63 209
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0083570 AT5G58330.2 80.093 432 64 6 28 456 30 442 0.0 686
Msa0083570 AT5G58330.1 80.370 433 62 7 28 456 30 443 0.0 684
Msa0083570 AT5G58330.3 84.419 353 35 4 105 456 1 334 0.0 597
Msa0083570 AT5G56720.1 38.484 343 186 5 92 430 42 363 5.03e-64 211
Msa0083570 AT1G04410.1 38.551 345 183 6 92 430 3 324 2.29e-63 208
Msa0083570 AT5G43330.1 38.551 345 183 6 92 430 3 324 1.04e-62 206

Find 155 sgRNAs with CRISPR-Local

Find 334 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTACATGCTGACGAGCTTTA+TGG 0.132573 1_2:-62674036 None:intergenic
TATGAGACATTATTGGATTT+TGG 0.134873 1_2:-62669241 None:intergenic
TTCTTGAATTCTAAGATTCT+TGG 0.195460 1_2:+62669542 Msa0083570:five_prime_UTR
AAATGAAATTACGTATTATT+AGG 0.196110 1_2:-62669207 None:intergenic
CCTATTGCTCTGAAATTATT+AGG 0.203572 1_2:+62671562 Msa0083570:CDS
ATCTTCTTATGAGACATTAT+TGG 0.218732 1_2:-62669248 None:intergenic
GCGGCTTTGCTAGACATAAA+TGG 0.224890 1_2:+62671873 Msa0083570:CDS
AAGTGTCAAATATGACAATA+TGG 0.242700 1_2:+62672376 Msa0083570:CDS
AATAATGGTTATGTAATAAA+AGG 0.243255 1_2:+62673616 Msa0083570:three_prime_UTR
TTTATGAAGAAGTTTCTAAA+AGG 0.247820 1_2:-62669469 None:intergenic
GACGGGCAACCCATCGATTC+TGG 0.258257 1_2:-62672439 None:intergenic
GCAGACAGAAGCTGAGTTAT+TGG 0.262024 1_2:+62673337 Msa0083570:intron
TTCAGAGCAATAGGTTGATT+TGG 0.265247 1_2:-62671553 None:intergenic
CTGCCTTACCTATGATTTGA+AGG 0.303691 1_2:+62669880 Msa0083570:CDS
CCTAATAATTTCAGAGCAAT+AGG 0.307670 1_2:-62671562 None:intergenic
GCAGAATGGGCTTTGCTAAT+AGG 0.308960 1_2:+62671819 Msa0083570:CDS
CGTAGAAGACACCTGCCTTC+AGG 0.314755 1_2:-62672350 None:intergenic
TTCCAGCTAAATTGCATGTT+TGG 0.322098 1_2:-62673957 None:intergenic
TGAATGTCAAAGCAGATATA+TGG 0.326000 1_2:+62673567 Msa0083570:three_prime_UTR
TATACCACTGGAAATCCTTA+TGG 0.344085 1_2:+62672961 Msa0083570:CDS
AATGGTAATTAATTTCTTCC+AGG 0.347857 1_2:-62671356 None:intergenic
ACACACACATGGATAACTTT+GGG 0.349611 1_2:-62673810 None:intergenic
AAGTGATCAAGGATCATAAA+TGG 0.368193 1_2:+62672466 Msa0083570:CDS
CAATATTTACCTCGCCGGTT+AGG 0.371646 1_2:-62673382 None:intergenic
AACCATTATTCTACATCAAT+TGG 0.372547 1_2:-62673603 None:intergenic
ATAATGGTTATGTAATAAAA+GGG 0.384387 1_2:+62673617 Msa0083570:three_prime_UTR
GCAAAGCCCATTCTGCATCT+TGG 0.385116 1_2:-62671812 None:intergenic
TTGATGAAGAGAAGTGTAGA+AGG 0.388912 1_2:-62669396 None:intergenic
TACCAATTGATGTAGAATAA+TGG 0.396473 1_2:+62673601 Msa0083570:three_prime_UTR
TTGGTCCTTACGTTTAATAT+AGG 0.397712 1_2:-62673938 None:intergenic
AAAGCCGCACGCTCCATTCC+AGG 0.399549 1_2:-62671858 None:intergenic
CACCTTGAAAAGTAGATGAT+TGG 0.401309 1_2:-62671407 None:intergenic
CTCCTACTCCCGAGGGTGAT+TGG 0.402769 1_2:+62672708 Msa0083570:CDS
ATTAATTACCATTGCAGTCT+CGG 0.405725 1_2:+62671366 Msa0083570:CDS
GTAGAAGACACCTGCCTTCA+GGG 0.407624 1_2:-62672349 None:intergenic
GGATTTGAAATACAAGTATA+AGG 0.412323 1_2:-62669334 None:intergenic
ATTCTGGCATTTAAGAAGTC+AGG 0.412554 1_2:-62672423 None:intergenic
CTTGAAACTTTCTAAATGTA+GGG 0.413682 1_2:+62673902 Msa0083570:three_prime_UTR
AATTATTGTGTTCTACAAGC+TGG 0.418187 1_2:+62674123 Msa0083570:three_prime_UTR
AACACACACATGGATAACTT+TGG 0.419395 1_2:-62673811 None:intergenic
CGGCTTTGCTAGACATAAAT+GGG 0.422655 1_2:+62671874 Msa0083570:CDS
ATTGCAGTCTCGGGTGCTGC+TGG 0.423582 1_2:+62671376 Msa0083570:CDS
AAATGTGTGGCTCACCTAAC+CGG 0.423595 1_2:+62673368 Msa0083570:CDS
TAACTCGTTTAGATGAGAAC+AGG 0.428132 1_2:+62672215 Msa0083570:CDS
TTCTTAAATGCCAGAATCGA+TGG 0.429266 1_2:+62672429 Msa0083570:CDS
ATCCTTGATCACTTCTTTGA+CGG 0.429838 1_2:-62672457 None:intergenic
TTCAAGAAACGCTAAGTTTG+TGG 0.432420 1_2:-62669527 None:intergenic
ACTTGAAACTTTCTAAATGT+AGG 0.440684 1_2:+62673901 Msa0083570:three_prime_UTR
AGTGTCAAATATGACAATAT+GGG 0.441799 1_2:+62672377 Msa0083570:CDS
CAAGGATCATAAATGGTTAG+AGG 0.443116 1_2:+62672473 Msa0083570:CDS
TGAGAACAGGGCAAAATGTC+AGG 0.444147 1_2:+62672228 Msa0083570:CDS
TATTAGCATTGATCCTTATG+AGG 0.445684 1_2:+62671785 Msa0083570:CDS
GCATCTTGGAACACCTCATA+AGG 0.449712 1_2:-62671798 None:intergenic
AAGAAAATGAGAAAAGATAT+AGG 0.450388 1_2:-62669442 None:intergenic
ACTCACAGCCTTCAAATCAT+AGG 0.450924 1_2:-62669888 None:intergenic
GGATCCTGTGTCTGTACTGC+TGG 0.455969 1_2:-62669827 None:intergenic
GAAATACAAGTATAAGGCTA+TGG 0.457061 1_2:-62669328 None:intergenic
CGTAACTAGAAATAGCCAAT+AGG 0.459073 1_2:-62674078 None:intergenic
TCCTTGATCACTTCTTTGAC+GGG 0.461687 1_2:-62672456 None:intergenic
GGTTAATTGTGTTTGAGATA+AGG 0.463732 1_2:-62669140 None:intergenic
ATATCTTCAGCTATTCCATA+AGG 0.466564 1_2:-62672976 None:intergenic
TTAGCTAGTTACATTTCTCC+TGG 0.468553 1_2:-62673539 None:intergenic
GACCAAACATGCAATTTAGC+TGG 0.471722 1_2:+62673955 Msa0083570:three_prime_UTR
TTAATTACCATTGCAGTCTC+GGG 0.472464 1_2:+62671367 Msa0083570:CDS
TTATGAAGAAGTTTCTAAAA+GGG 0.474780 1_2:-62669468 None:intergenic
TGCTCTGAAATTATTAGGAT+CGG 0.475625 1_2:+62671567 Msa0083570:CDS
CAGAAGACACCATAGCAATC+AGG 0.479428 1_2:-62669860 None:intergenic
ATAGCAATCAGGCTTACTCT+TGG 0.486336 1_2:-62669849 None:intergenic
GGTGCAAAGCCTCGAGGACC+TGG 0.489357 1_2:+62671840 Msa0083570:CDS
CAAGCTGACTTTGTATTGCA+AGG 0.493060 1_2:-62672061 None:intergenic
TAGCAATCAGGCTTACTCTT+GGG 0.494853 1_2:-62669848 None:intergenic
CACAACTCTCATTTCTCTCT+AGG 0.499049 1_2:+62669622 Msa0083570:CDS
ATTGTAATCTTAACAACGTA+AGG 0.500539 1_2:+62673873 Msa0083570:three_prime_UTR
TTGCAATTACATACAATGCC+AGG 0.504238 1_2:+62672936 Msa0083570:CDS
GGTGTTCCAAGATGCAGAAT+GGG 0.508422 1_2:+62671806 Msa0083570:CDS
CTCTTTATTTCCTTTGCTGA+GGG 0.509334 1_2:+62671755 Msa0083570:CDS
GCTCGTCAGCATGTAATAAG+TGG 0.510640 1_2:+62674043 Msa0083570:three_prime_UTR
AGGTGTTCCAAGATGCAGAA+TGG 0.523630 1_2:+62671805 Msa0083570:CDS
CAGTATGCCGTGTCGATCAA+AGG 0.525529 1_2:+62673005 Msa0083570:CDS
CAATGCCAGGTGTATACCAC+TGG 0.532941 1_2:+62672949 Msa0083570:CDS
GCCCTTTCCGTCATATTCTG+AGG 0.533600 1_2:+62673757 Msa0083570:three_prime_UTR
GTATGAGGGAACAAAGAGGA+TGG 0.535483 1_2:-62669355 None:intergenic
AAAGTACAGCGATGGTGCCT+AGG 0.539043 1_2:-62669651 None:intergenic
CCTTGGCTAATTTCTGTCGT+AGG 0.542771 1_2:-62673154 None:intergenic
ACTCTTTATTTCCTTTGCTG+AGG 0.543885 1_2:+62671754 Msa0083570:CDS
AGGTCATTGCAAGCTCTTGA+AGG 0.545237 1_2:+62671592 Msa0083570:CDS
ACATTTAGAAAGTTTCAAGT+TGG 0.545610 1_2:-62673898 None:intergenic
AGGAAGAGGAGACAAAATCC+TGG 0.546374 1_2:+62671338 Msa0083570:intron
AAATACAAGTATAAGGCTAT+GGG 0.548052 1_2:-62669327 None:intergenic
AAGCTGACTTTGTATTGCAA+GGG 0.548231 1_2:-62672060 None:intergenic
ACCTCAGAATATGACGGAAA+GGG 0.548502 1_2:-62673758 None:intergenic
TTGTTTGATTGTTAGAGAGG+TGG 0.548629 1_2:+62672605 Msa0083570:intron
GGCCGCAATATTTACCTCGC+CGG 0.551341 1_2:-62673387 None:intergenic
TTACATTTCTCCTGGGAGCA+TGG 0.551522 1_2:-62673531 None:intergenic
GCCCGTCAAAGAAGTGATCA+AGG 0.552804 1_2:+62672455 Msa0083570:CDS
TAAAACCTATATTAAACGTA+AGG 0.553419 1_2:+62673933 Msa0083570:three_prime_UTR
CCTGGGAGCATGGTATCACC+AGG 0.553980 1_2:-62673521 None:intergenic
GAAACCTAAAATAAACGTAA+AGG 0.554388 1_2:-62673668 None:intergenic
TTCTCTCTAGGACTCTTCCT+AGG 0.556403 1_2:+62669634 Msa0083570:CDS
CAGCCTTCAAATCATAGGTA+AGG 0.557569 1_2:-62669883 None:intergenic
CATCTAAACGAGTTAAAGCA+TGG 0.559378 1_2:-62672207 None:intergenic
AGGAGTGATCAAAGATCGTA+TGG 0.561984 1_2:-62672690 None:intergenic
CAATGTGTAGCTAGCCCTGA+AGG 0.566385 1_2:+62672335 Msa0083570:intron
AAGAGTAAGCCTGATTGCTA+TGG 0.566462 1_2:+62669851 Msa0083570:CDS
CGCTCCATTCCAGGTCCTCG+AGG 0.567002 1_2:-62671849 None:intergenic
TAGCTAGTTACATTTCTCCT+GGG 0.567890 1_2:-62673538 None:intergenic
ATTGCTGTTTGTGATCTACC+TGG 0.568507 1_2:+62673503 Msa0083570:CDS
AATTCTAAGATTCTTGGACA+TGG 0.568647 1_2:+62669548 Msa0083570:exon
TGTAATAAAAGGGGAAAACA+TGG 0.575545 1_2:+62673627 Msa0083570:three_prime_UTR
GTGTAGCTAGCCCTGAAGGC+AGG 0.575889 1_2:+62672339 Msa0083570:intron
CCTGGTGATACCATGCTCCC+AGG 0.576358 1_2:+62673521 Msa0083570:CDS
GCATGTTGAGTTCTGTGAAG+TGG 0.576492 1_2:-62669678 None:intergenic
TCTTAAATGCCAGAATCGAT+GGG 0.577340 1_2:+62672430 Msa0083570:CDS
TACCTCAGAATATGACGGAA+AGG 0.580063 1_2:-62673759 None:intergenic
CAACAATGCAGGTGTTGCGA+TGG 0.584262 1_2:+62671722 Msa0083570:intron
CTCGTCAGCATGTAATAAGT+GGG 0.587173 1_2:+62674044 Msa0083570:three_prime_UTR
GACAGAAGCTGAGTTATTGG+CGG 0.587741 1_2:+62673340 Msa0083570:intron
CACACACATGGATAACTTTG+GGG 0.588099 1_2:-62673809 None:intergenic
AACCAATCACCCTCGGGAGT+AGG 0.591109 1_2:-62672710 None:intergenic
AAAGCCTCGAGGACCTGGAA+TGG 0.591306 1_2:+62671845 Msa0083570:CDS
TGCAGGTGTTGCGATGGAGT+TGG 0.591881 1_2:+62671728 Msa0083570:intron
CTTGCAATACAAAGTCAGCT+TGG 0.593408 1_2:+62672062 Msa0083570:CDS
TGAAATTATTAGGATCGGAA+AGG 0.596316 1_2:+62671572 Msa0083570:CDS
TTCTGGCATTTAAGAAGTCA+GGG 0.596329 1_2:-62672422 None:intergenic
AATGTCAAAGTTATAGTCGT+GGG 0.603734 1_2:+62672034 Msa0083570:CDS
TTTGATCACTCCTACTCCCG+AGG 0.603879 1_2:+62672700 Msa0083570:CDS
ATAACAACTTCCCTCAGCAA+AGG 0.605246 1_2:-62671765 None:intergenic
AGTAGAAAACCAATCACCCT+CGG 0.605810 1_2:-62672717 None:intergenic
TTGAAACTTTCTAAATGTAG+GGG 0.608954 1_2:+62673903 Msa0083570:three_prime_UTR
AGGTGTTGCGATGGAGTTGG+AGG 0.609283 1_2:+62671731 Msa0083570:intron
GTGTCAAATATGACAATATG+GGG 0.610500 1_2:+62672378 Msa0083570:CDS
TAATGGTTATGTAATAAAAG+GGG 0.611749 1_2:+62673618 Msa0083570:three_prime_UTR
GGGAAACCACTCAACTACTC+AGG 0.614384 1_2:+62672398 Msa0083570:CDS
GTAGAAAACCAATCACCCTC+GGG 0.619646 1_2:-62672716 None:intergenic
AACTCGTTTAGATGAGAACA+GGG 0.621950 1_2:+62672216 Msa0083570:CDS
TTGTAATCTTAACAACGTAA+GGG 0.625187 1_2:+62673874 Msa0083570:three_prime_UTR
CAGGGACCTGAGTAGTTGAG+TGG 0.629977 1_2:-62672404 None:intergenic
CAATGTCAAAGTTATAGTCG+TGG 0.630469 1_2:+62672033 Msa0083570:CDS
TTCCGTTTAAAACGTCCATG+TGG 0.637434 1_2:-62673842 None:intergenic
AGCAGCACCCGAGACTGCAA+TGG 0.640432 1_2:-62671374 None:intergenic
GGCGCCAGCAGTACAGACAC+AGG 0.643318 1_2:+62669823 Msa0083570:CDS
GATTTCCAGTGGTATACACC+TGG 0.646420 1_2:-62672954 None:intergenic
TGGTGATTATGAACTTGTCA+AGG 0.654428 1_2:+62673112 Msa0083570:CDS
ACACTTGCCTTTGATCGACA+CGG 0.659090 1_2:-62673012 None:intergenic
AGAGTTACCTCAGAATATGA+CGG 0.661366 1_2:-62673764 None:intergenic
GGTAGTATGAGGGAACAAAG+AGG 0.664823 1_2:-62669359 None:intergenic
TTGATCACTCCTACTCCCGA+GGG 0.672874 1_2:+62672701 Msa0083570:CDS
ACACACATGGATAACTTTGG+GGG 0.678822 1_2:-62673808 None:intergenic
CTAATAGGTGCAAAGCCTCG+AGG 0.681429 1_2:+62671834 Msa0083570:CDS
AGGACCTGGAATGGAGCGTG+CGG 0.691301 1_2:+62671854 Msa0083570:CDS
TATTCCATAAGGATTTCCAG+TGG 0.701953 1_2:-62672965 None:intergenic
CCTACGACAGAAATTAGCCA+AGG 0.707374 1_2:+62673154 Msa0083570:CDS
TGTGGCTCACCTAACCGGCG+AGG 0.716043 1_2:+62673373 Msa0083570:CDS
GTGGTGCTAAAGTACAGCGA+TGG 0.725438 1_2:-62669659 None:intergenic
ACAGGGAAAAGCACTCAATG+CGG 0.748480 1_2:+62672000 Msa0083570:intron

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAATGAAATTACGTATTATT+AGG - chr1_2:62669210-62669229 None:intergenic 15.0%
!!! AACTGCAATTTTAAATTAAT+AGG - chr1_2:62670339-62670358 None:intergenic 15.0%
!!! TATTAATTTAAAATTGCAGT+TGG + chr1_2:62670338-62670357 Msa0083570:intron 15.0%
!! ATATATTATATAGATAGAAG+TGG + chr1_2:62670831-62670850 Msa0083570:intron 15.0%
!!! ATTGTAACAATTATCTTTTA+TGG + chr1_2:62671095-62671114 Msa0083570:intron 15.0%
!!! TTGTAACAATTATCTTTTAT+GGG + chr1_2:62671096-62671115 Msa0083570:intron 15.0%
!! ATATATTAAGTAAATACACA+AGG - chr1_2:62672769-62672788 None:intergenic 15.0%
!!! ACAAAAAGTTTTATTCATTA+GGG + chr1_2:62673086-62673105 Msa0083570:intron 15.0%
!! AAGAAAATGAGAAAAGATAT+AGG - chr1_2:62669445-62669464 None:intergenic 20.0%
!!! TTATGAAGAAGTTTCTAAAA+GGG - chr1_2:62669471-62669490 None:intergenic 20.0%
!! TTTATGAAGAAGTTTCTAAA+AGG - chr1_2:62669472-62669491 None:intergenic 20.0%
!! TGGTTAATATGTTCTTTAAT+TGG + chr1_2:62670005-62670024 Msa0083570:intron 20.0%
!! ATGTTCTTTAATTGGATATT+TGG + chr1_2:62670013-62670032 Msa0083570:intron 20.0%
!! TGTTCTTTAATTGGATATTT+GGG + chr1_2:62670014-62670033 Msa0083570:intron 20.0%
!! CATCTATATATACAATGATT+AGG - chr1_2:62670085-62670104 None:intergenic 20.0%
!! ACATTATTCAGTGTAATTAT+AGG + chr1_2:62670167-62670186 Msa0083570:intron 20.0%
!! TCATTAATTCTTATTCTTAC+TGG + chr1_2:62670249-62670268 Msa0083570:intron 20.0%
!!! GGTTCCAAAATTTAAATTTT+TGG + chr1_2:62670633-62670652 Msa0083570:intron 20.0%
!!! CTCACCAAAAATTTAAATTT+TGG - chr1_2:62670640-62670659 None:intergenic 20.0%
!! ACTAAATCATTTGTTTCATT+TGG + chr1_2:62671233-62671252 Msa0083570:intron 20.0%
!!! TATAGTTAACTGTCTTTTAT+AGG - chr1_2:62671950-62671969 None:intergenic 20.0%
!!! AAATTTTTTGCAGGAATATT+TGG - chr1_2:62672187-62672206 None:intergenic 20.0%
!! CAAAAGGTAAAATTTGTAAT+TGG + chr1_2:62672516-62672535 Msa0083570:intron 20.0%
!! AATCCATGTAATTAAATATG+TGG + chr1_2:62672539-62672558 Msa0083570:intron 20.0%
!! ATTCCACATATTTAATTACA+TGG - chr1_2:62672545-62672564 None:intergenic 20.0%
!!! AACTTTAAAGCTCAATTAAA+AGG + chr1_2:62672852-62672871 Msa0083570:intron 20.0%
!!! AATAAAACTTTTTGTCATAG+AGG - chr1_2:62673081-62673100 None:intergenic 20.0%
!!! GACAAAAAGTTTTATTCATT+AGG + chr1_2:62673085-62673104 Msa0083570:intron 20.0%
!! CGATTACAATTTCATATATT+TGG + chr1_2:62673207-62673226 Msa0083570:intron 20.0%
!!! GTTTAATATAGGTTTTAAGT+TGG - chr1_2:62673930-62673949 None:intergenic 20.0%
!! TAAAACCTATATTAAACGTA+AGG + chr1_2:62673933-62673952 Msa0083570:three_prime_UTR 20.0%
!! TTTCCACATGTTTTCTTTTA+GGG - chr1_2:62669166-62669185 None:intergenic 25.0%
!! TTTTCCACATGTTTTCTTTT+AGG - chr1_2:62669167-62669186 None:intergenic 25.0%
!! TATGAGACATTATTGGATTT+TGG - chr1_2:62669244-62669263 None:intergenic 25.0%
! ATCTTCTTATGAGACATTAT+TGG - chr1_2:62669251-62669270 None:intergenic 25.0%
! AGAAGATAAAAAACAAGTTG+TGG + chr1_2:62669264-62669283 Msa0083570:five_prime_UTR 25.0%
! AAATACAAGTATAAGGCTAT+GGG - chr1_2:62669330-62669349 None:intergenic 25.0%
!! GGATTTGAAATACAAGTATA+AGG - chr1_2:62669337-62669356 None:intergenic 25.0%
!!! TTCTTGAATTCTAAGATTCT+TGG + chr1_2:62669542-62669561 Msa0083570:five_prime_UTR 25.0%
! TTTGTATCAATTAAGCTTCT+TGG + chr1_2:62669758-62669777 Msa0083570:intron 25.0%
! TTGTATCAATTAAGCTTCTT+GGG + chr1_2:62669759-62669778 Msa0083570:intron 25.0%
! CTTGACTAAAATATAAAAGC+AGG - chr1_2:62669799-62669818 None:intergenic 25.0%
!!! TTTATATTTTAGTCAAGTGC+AGG + chr1_2:62669802-62669821 Msa0083570:intron 25.0%
! ATAAATACAGTAGAGTAACA+AGG - chr1_2:62669917-62669936 None:intergenic 25.0%
!!! AAATATTTGTTGGAAGCATT+AGG - chr1_2:62671056-62671075 None:intergenic 25.0%
!! GATTTTCCTCAAATATTTGT+TGG - chr1_2:62671066-62671085 None:intergenic 25.0%
! AATACTGTGGAAAATTTGAA+AGG - chr1_2:62671262-62671281 None:intergenic 25.0%
! CTTAACATTAAGTAATACTG+TGG - chr1_2:62671275-62671294 None:intergenic 25.0%
!! ATATACCAATTTGTTTCGTT+TGG + chr1_2:62671302-62671321 Msa0083570:intron 25.0%
! AATGGTAATTAATTTCTTCC+AGG - chr1_2:62671359-62671378 None:intergenic 25.0%
! GACATAAAAAATTAACTCAG+TGG - chr1_2:62671507-62671526 None:intergenic 25.0%
!!! TTTGAAAAGCATCAGTAATA+TGG - chr1_2:62671687-62671706 None:intergenic 25.0%
!!! TTCTGTTATTTCTTCTTCTT+TGG - chr1_2:62672292-62672311 None:intergenic 25.0%
! AAGTGTCAAATATGACAATA+TGG + chr1_2:62672376-62672395 Msa0083570:CDS 25.0%
! AGTGTCAAATATGACAATAT+GGG + chr1_2:62672377-62672396 Msa0083570:CDS 25.0%
!! ACTTGTTAACTTATTACACA+AGG - chr1_2:62672583-62672602 None:intergenic 25.0%
! TTATTGTTTGATTGTTAGAG+AGG + chr1_2:62672602-62672621 Msa0083570:intron 25.0%
! CTTAATATATTCACCAATGT+CGG + chr1_2:62672779-62672798 Msa0083570:intron 25.0%
! TTAATATATTCACCAATGTC+GGG + chr1_2:62672780-62672799 Msa0083570:intron 25.0%
! CAAAGACAAAAACTGTTTAT+AGG - chr1_2:62672878-62672897 None:intergenic 25.0%
! ATTTGTATTCTCTCTTATCA+GGG + chr1_2:62673479-62673498 Msa0083570:intron 25.0%
! TACCAATTGATGTAGAATAA+TGG + chr1_2:62673601-62673620 Msa0083570:three_prime_UTR 25.0%
! AACCATTATTCTACATCAAT+TGG - chr1_2:62673606-62673625 None:intergenic 25.0%
! GAAACCTAAAATAAACGTAA+AGG - chr1_2:62673671-62673690 None:intergenic 25.0%
!!! GTTTATTTTAGGTTTCAAGT+TGG + chr1_2:62673675-62673694 Msa0083570:three_prime_UTR 25.0%
! ATTGTAATCTTAACAACGTA+AGG + chr1_2:62673873-62673892 Msa0083570:three_prime_UTR 25.0%
! TTGTAATCTTAACAACGTAA+GGG + chr1_2:62673874-62673893 Msa0083570:three_prime_UTR 25.0%
!! ACATTTAGAAAGTTTCAAGT+TGG - chr1_2:62673901-62673920 None:intergenic 25.0%
! ACTTGAAACTTTCTAAATGT+AGG + chr1_2:62673901-62673920 Msa0083570:three_prime_UTR 25.0%
! CTTGAAACTTTCTAAATGTA+GGG + chr1_2:62673902-62673921 Msa0083570:three_prime_UTR 25.0%
! TTGAAACTTTCTAAATGTAG+GGG + chr1_2:62673903-62673922 Msa0083570:three_prime_UTR 25.0%
! GGTTAATTGTGTTTGAGATA+AGG - chr1_2:62669143-62669162 None:intergenic 30.0%
! TTCCACATGTTTTCTTTTAG+GGG - chr1_2:62669165-62669184 None:intergenic 30.0%
GAAATACAAGTATAAGGCTA+TGG - chr1_2:62669331-62669350 None:intergenic 30.0%
AGTGTAGAAGGAAGAAAAAA+GGG - chr1_2:62669387-62669406 None:intergenic 30.0%
AAGTGTAGAAGGAAGAAAAA+AGG - chr1_2:62669388-62669407 None:intergenic 30.0%
!! AATTCTAAGATTCTTGGACA+TGG + chr1_2:62669548-62669567 Msa0083570:exon 30.0%
!! AAGAGTAAAGTTACTGACTT+TGG - chr1_2:62669726-62669745 None:intergenic 30.0%
CTTGCTTTGTATTCAACTTA+TGG + chr1_2:62669964-62669983 Msa0083570:intron 30.0%
! AGAATTTTGTTAAGGAGGAT+TGG + chr1_2:62670040-62670059 Msa0083570:intron 30.0%
TCTCAAATTATTATCCGTGT+CGG - chr1_2:62670142-62670161 None:intergenic 30.0%
ATTGCAGTTGGTTAATATAC+AGG + chr1_2:62670350-62670369 Msa0083570:intron 30.0%
TTGCAGTTGGTTAATATACA+GGG + chr1_2:62670351-62670370 Msa0083570:intron 30.0%
! ATCTGAAGCATATTGTGATT+TGG + chr1_2:62670610-62670629 Msa0083570:intron 30.0%
! TCTGAAGCATATTGTGATTT+GGG + chr1_2:62670611-62670630 Msa0083570:intron 30.0%
GTGATCTTCAATTACATGTA+CGG - chr1_2:62670707-62670726 None:intergenic 30.0%
AGATAGAAGTGGAACTAAAT+TGG + chr1_2:62670842-62670861 Msa0083570:intron 30.0%
AACACCAATTGATATCCAAA+AGG + chr1_2:62670955-62670974 Msa0083570:intron 30.0%
! ATAATGTTCTTGAAGCCTTT+TGG - chr1_2:62670973-62670992 None:intergenic 30.0%
AAAGGCTTCAAGAACATTAT+TGG + chr1_2:62670973-62670992 Msa0083570:intron 30.0%
ATGCTTCCAACAAATATTTG+AGG + chr1_2:62671057-62671076 Msa0083570:intron 30.0%
! TAGCAGTTTAGGATCAAATA+TGG + chr1_2:62671128-62671147 Msa0083570:intron 30.0%
GATCAAATATGGTAAACAGA+TGG + chr1_2:62671139-62671158 Msa0083570:intron 30.0%
TGTATCTAGAGGAGTTAATA+TGG - chr1_2:62671195-62671214 None:intergenic 30.0%
!! CAAATGATTTAGTTCTGAGA+CGG - chr1_2:62671226-62671245 None:intergenic 30.0%
ATTAATTACCATTGCAGTCT+CGG + chr1_2:62671366-62671385 Msa0083570:CDS 30.0%
!! TTCCAATCATCTACTTTTCA+AGG + chr1_2:62671405-62671424 Msa0083570:CDS 30.0%
CCTAATAATTTCAGAGCAAT+AGG - chr1_2:62671565-62671584 None:intergenic 30.0%
!! CCTATTGCTCTGAAATTATT+AGG + chr1_2:62671562-62671581 Msa0083570:CDS 30.0%
!! TGCTCTGAAATTATTAGGAT+CGG + chr1_2:62671567-62671586 Msa0083570:CDS 30.0%
TGAAATTATTAGGATCGGAA+AGG + chr1_2:62671572-62671591 Msa0083570:CDS 30.0%
ATGTTCTAATTCAACAATGC+AGG + chr1_2:62671711-62671730 Msa0083570:intron 30.0%
!! TATTAGCATTGATCCTTATG+AGG + chr1_2:62671785-62671804 Msa0083570:CDS 30.0%
AATGTCAAAGTTATAGTCGT+GGG + chr1_2:62672034-62672053 Msa0083570:CDS 30.0%
TAGCAACATTAGGAACAATA+AGG - chr1_2:62672115-62672134 None:intergenic 30.0%
CTGCATTAAAATACACATGA+AGG - chr1_2:62672139-62672158 None:intergenic 30.0%
!!! AAAGCATGGAAATTTTTTGC+AGG - chr1_2:62672196-62672215 None:intergenic 30.0%
GTGTCAAATATGACAATATG+GGG + chr1_2:62672378-62672397 Msa0083570:CDS 30.0%
AAGTGATCAAGGATCATAAA+TGG + chr1_2:62672466-62672485 Msa0083570:CDS 30.0%
GTTCACTGAAAAAGTTCAAA+AGG + chr1_2:62672500-62672519 Msa0083570:CDS 30.0%
TGGTGCACTTATTCAAAAAT+GGG + chr1_2:62672625-62672644 Msa0083570:CDS 30.0%
ATATCTTCAGCTATTCCATA+AGG - chr1_2:62672979-62672998 None:intergenic 30.0%
!!! AGTTTTATTCATTAGGGAGA+TGG + chr1_2:62673092-62673111 Msa0083570:intron 30.0%
TAATGCATTTACCAATGTTC+AGG - chr1_2:62673285-62673304 None:intergenic 30.0%
CATTTGTATTCTCTCTTATC+AGG + chr1_2:62673478-62673497 Msa0083570:intron 30.0%
TTTGTATTCTCTCTTATCAG+GGG + chr1_2:62673480-62673499 Msa0083570:intron 30.0%
TGAATGTCAAAGCAGATATA+TGG + chr1_2:62673567-62673586 Msa0083570:three_prime_UTR 30.0%
! ACATGGCTAAATTGCATTTT+TGG + chr1_2:62673644-62673663 Msa0083570:three_prime_UTR 30.0%
!! TGGACCTTTACGTTTATTTT+AGG + chr1_2:62673664-62673683 Msa0083570:three_prime_UTR 30.0%
TTGGTCCTTACGTTTAATAT+AGG - chr1_2:62673941-62673960 None:intergenic 30.0%
! TGGGATTTTGTATAACCTAT+TGG + chr1_2:62674063-62674082 Msa0083570:three_prime_UTR 30.0%
AATTATTGTGTTCTACAAGC+TGG + chr1_2:62674123-62674142 Msa0083570:three_prime_UTR 30.0%
! TCCACATGTTTTCTTTTAGG+GGG - chr1_2:62669164-62669183 None:intergenic 35.0%
TAGAAGGAAGAAAAAAGGGA+GGG - chr1_2:62669383-62669402 None:intergenic 35.0%
! TTGATGAAGAGAAGTGTAGA+AGG - chr1_2:62669399-62669418 None:intergenic 35.0%
TTCAAGAAACGCTAAGTTTG+TGG - chr1_2:62669530-62669549 None:intergenic 35.0%
! TTGGGAGCAGAATTTTGTTA+AGG + chr1_2:62670032-62670051 Msa0083570:intron 35.0%
! ATTTTGTTAAGGAGGATTGG+TGG + chr1_2:62670043-62670062 Msa0083570:intron 35.0%
! TGTAATTATAGGTGTCGTGT+CGG + chr1_2:62670178-62670197 Msa0083570:intron 35.0%
TGGTTAATATACAGGGATAG+AGG + chr1_2:62670358-62670377 Msa0083570:intron 35.0%
TAATATACAGGGATAGAGGT+CGG + chr1_2:62670362-62670381 Msa0083570:intron 35.0%
AAACTAAAACTCTGGTATGG+GGG - chr1_2:62670516-62670535 None:intergenic 35.0%
CAAACTAAAACTCTGGTATG+GGG - chr1_2:62670517-62670536 None:intergenic 35.0%
GCAAACTAAAACTCTGGTAT+GGG - chr1_2:62670518-62670537 None:intergenic 35.0%
AGCAAACTAAAACTCTGGTA+TGG - chr1_2:62670519-62670538 None:intergenic 35.0%
CACCTCTCAATCATCATTTA+CGG - chr1_2:62670542-62670561 None:intergenic 35.0%
CACAATTGAGAGACTGTTAA+AGG + chr1_2:62670571-62670590 Msa0083570:intron 35.0%
CTGAAGCATATTGTGATTTG+GGG + chr1_2:62670612-62670631 Msa0083570:intron 35.0%
TGAAGATCACACTACAATTG+AGG + chr1_2:62670717-62670736 Msa0083570:intron 35.0%
!! ATTCGAAGCATCGTGTATAT+AGG + chr1_2:62670806-62670825 Msa0083570:intron 35.0%
CACAAACTGAACAAAAGAGT+AGG - chr1_2:62670902-62670921 None:intergenic 35.0%
! GAAGCCTTTTGGATATCAAT+TGG - chr1_2:62670962-62670981 None:intergenic 35.0%
CAAATATGGTAAACAGATGG+AGG + chr1_2:62671142-62671161 Msa0083570:intron 35.0%
ATCTAGAGGAGTTAATATGG+AGG - chr1_2:62671192-62671211 None:intergenic 35.0%
ATTGGCCAAACGAAACAAAT+TGG - chr1_2:62671310-62671329 None:intergenic 35.0%
TTAATTACCATTGCAGTCTC+GGG + chr1_2:62671367-62671386 Msa0083570:CDS 35.0%
CACCTTGAAAAGTAGATGAT+TGG - chr1_2:62671410-62671429 None:intergenic 35.0%
CTAAATTGCATGGCCATTAA+AGG - chr1_2:62671482-62671501 None:intergenic 35.0%
! TTTTTATGTCAGCTTGCATC+TGG + chr1_2:62671517-62671536 Msa0083570:intron 35.0%
!! TTCAGAGCAATAGGTTGATT+TGG - chr1_2:62671556-62671575 None:intergenic 35.0%
! TATGAAAATGCCCCTGTTTT+TGG + chr1_2:62671637-62671656 Msa0083570:intron 35.0%
ACACGTATACTCCAAAAACA+GGG - chr1_2:62671651-62671670 None:intergenic 35.0%
TACACGTATACTCCAAAAAC+AGG - chr1_2:62671652-62671671 None:intergenic 35.0%
TTGGAGTATACGTGTATCAT+AGG + chr1_2:62671656-62671675 Msa0083570:intron 35.0%
! ACTCTTTATTTCCTTTGCTG+AGG + chr1_2:62671754-62671773 Msa0083570:CDS 35.0%
! CTCTTTATTTCCTTTGCTGA+GGG + chr1_2:62671755-62671774 Msa0083570:CDS 35.0%
! CATAAATGGGCAGATTTTTG+CGG + chr1_2:62671887-62671906 Msa0083570:CDS 35.0%
TATCTTACCATGTGTACAAC+AGG + chr1_2:62671982-62672001 Msa0083570:intron 35.0%
ATCTTACCATGTGTACAACA+GGG + chr1_2:62671983-62672002 Msa0083570:intron 35.0%
CAATGTCAAAGTTATAGTCG+TGG + chr1_2:62672033-62672052 Msa0083570:CDS 35.0%
! AAGCTGACTTTGTATTGCAA+GGG - chr1_2:62672063-62672082 None:intergenic 35.0%
ACATGAAGGTTAGCAACATT+AGG - chr1_2:62672125-62672144 None:intergenic 35.0%
CATCTAAACGAGTTAAAGCA+TGG - chr1_2:62672210-62672229 None:intergenic 35.0%
TAACTCGTTTAGATGAGAAC+AGG + chr1_2:62672215-62672234 Msa0083570:CDS 35.0%
AACTCGTTTAGATGAGAACA+GGG + chr1_2:62672216-62672235 Msa0083570:CDS 35.0%
TTCTGGCATTTAAGAAGTCA+GGG - chr1_2:62672425-62672444 None:intergenic 35.0%
ATTCTGGCATTTAAGAAGTC+AGG - chr1_2:62672426-62672445 None:intergenic 35.0%
TTCTTAAATGCCAGAATCGA+TGG + chr1_2:62672429-62672448 Msa0083570:CDS 35.0%
TCTTAAATGCCAGAATCGAT+GGG + chr1_2:62672430-62672449 Msa0083570:CDS 35.0%
ATCCTTGATCACTTCTTTGA+CGG - chr1_2:62672460-62672479 None:intergenic 35.0%
CAAGGATCATAAATGGTTAG+AGG + chr1_2:62672473-62672492 Msa0083570:CDS 35.0%
TTGTTTGATTGTTAGAGAGG+TGG + chr1_2:62672605-62672624 Msa0083570:intron 35.0%
GTGGTGCACTTATTCAAAAA+TGG + chr1_2:62672624-62672643 Msa0083570:CDS 35.0%
GGTGCACTTATTCAAAAATG+GGG + chr1_2:62672626-62672645 Msa0083570:CDS 35.0%
TTGCAATTACATACAATGCC+AGG + chr1_2:62672936-62672955 Msa0083570:CDS 35.0%
TATACCACTGGAAATCCTTA+TGG + chr1_2:62672961-62672980 Msa0083570:CDS 35.0%
TATTCCATAAGGATTTCCAG+TGG - chr1_2:62672968-62672987 None:intergenic 35.0%
TGGTGATTATGAACTTGTCA+AGG + chr1_2:62673112-62673131 Msa0083570:CDS 35.0%
TAGCTAGTTACATTTCTCCT+GGG - chr1_2:62673541-62673560 None:intergenic 35.0%
TTAGCTAGTTACATTTCTCC+TGG - chr1_2:62673542-62673561 None:intergenic 35.0%
AGAGTTACCTCAGAATATGA+CGG - chr1_2:62673767-62673786 None:intergenic 35.0%
ACACACACATGGATAACTTT+GGG - chr1_2:62673813-62673832 None:intergenic 35.0%
AACACACACATGGATAACTT+TGG - chr1_2:62673814-62673833 None:intergenic 35.0%
TTCCAGCTAAATTGCATGTT+TGG - chr1_2:62673960-62673979 None:intergenic 35.0%
CGTAACTAGAAATAGCCAAT+AGG - chr1_2:62674081-62674100 None:intergenic 35.0%
ACCCCCTAAAAGAAAACATG+TGG + chr1_2:62669160-62669179 Msa0083570:five_prime_UTR 40.0%
AAAAAGGGAGGGTAGTATGA+GGG - chr1_2:62669372-62669391 None:intergenic 40.0%
AAAAAAGGGAGGGTAGTATG+AGG - chr1_2:62669373-62669392 None:intergenic 40.0%
GTAGAAGGAAGAAAAAAGGG+AGG - chr1_2:62669384-62669403 None:intergenic 40.0%
CACAACTCTCATTTCTCTCT+AGG + chr1_2:62669622-62669641 Msa0083570:CDS 40.0%
TAGCAATCAGGCTTACTCTT+GGG - chr1_2:62669851-62669870 None:intergenic 40.0%
ATAGCAATCAGGCTTACTCT+TGG - chr1_2:62669852-62669871 None:intergenic 40.0%
AAGAGTAAGCCTGATTGCTA+TGG + chr1_2:62669851-62669870 Msa0083570:CDS 40.0%
CTGCCTTACCTATGATTTGA+AGG + chr1_2:62669880-62669899 Msa0083570:CDS 40.0%
CAGCCTTCAAATCATAGGTA+AGG - chr1_2:62669886-62669905 None:intergenic 40.0%
ACTCACAGCCTTCAAATCAT+AGG - chr1_2:62669891-62669910 None:intergenic 40.0%
!! GGCTTTAGTGCATGATTTTG+TGG + chr1_2:62669985-62670004 Msa0083570:intron 40.0%
! GGAGCAGAATTTTGTTAAGG+AGG + chr1_2:62670035-62670054 Msa0083570:intron 40.0%
AGATGTCATCCCTAATACAC+CGG + chr1_2:62670100-62670119 Msa0083570:intron 40.0%
TAATGACATCCTACGAAGCA+CGG - chr1_2:62670235-62670254 None:intergenic 40.0%
AACTAAAACTCTGGTATGGG+GGG - chr1_2:62670515-62670534 None:intergenic 40.0%
TACGGAGCAAACTAAAACTC+TGG - chr1_2:62670524-62670543 None:intergenic 40.0%
CTCCGTAAATGATGATTGAG+AGG + chr1_2:62670537-62670556 Msa0083570:intron 40.0%
ATGACTGAAATCGTCTGATG+CGG + chr1_2:62670675-62670694 Msa0083570:intron 40.0%
TATGGTAAACAGATGGAGGA+TGG + chr1_2:62671146-62671165 Msa0083570:intron 40.0%
CGGTGAATCTTTGTATCTAG+AGG - chr1_2:62671206-62671225 None:intergenic 40.0%
TCCTCTTCCTGTAAACACAT+TGG - chr1_2:62671328-62671347 None:intergenic 40.0%
!! TTTTCAAGGTGAGCGTATCT+TGG + chr1_2:62671419-62671438 Msa0083570:intron 40.0%
TCAGACTCAGTCACCTTTAA+TGG + chr1_2:62671466-62671485 Msa0083570:intron 40.0%
CTCAGTGGAACTAAATTGCA+TGG - chr1_2:62671492-62671511 None:intergenic 40.0%
! CTTGCATCTGGTGAAGTTTT+TGG + chr1_2:62671529-62671548 Msa0083570:CDS 40.0%
CACGTATACTCCAAAAACAG+GGG - chr1_2:62671650-62671669 None:intergenic 40.0%
ATAACAACTTCCCTCAGCAA+AGG - chr1_2:62671768-62671787 None:intergenic 40.0%
CGGCTTTGCTAGACATAAAT+GGG + chr1_2:62671874-62671893 Msa0083570:CDS 40.0%
! TTTTTGCGGAGCAGGTAAAT+TGG + chr1_2:62671901-62671920 Msa0083570:intron 40.0%
! TTTTGCGGAGCAGGTAAATT+GGG + chr1_2:62671902-62671921 Msa0083570:intron 40.0%
! CAAGCTGACTTTGTATTGCA+AGG - chr1_2:62672064-62672083 None:intergenic 40.0%
CTTGCAATACAAAGTCAGCT+TGG + chr1_2:62672062-62672081 Msa0083570:CDS 40.0%
TCCTTGATCACTTCTTTGAC+GGG - chr1_2:62672459-62672478 None:intergenic 40.0%
AGGAGTGATCAAAGATCGTA+TGG - chr1_2:62672693-62672712 None:intergenic 40.0%
AGTAGAAAACCAATCACCCT+CGG - chr1_2:62672720-62672739 None:intergenic 40.0%
AAATACACGTGAATGCGCAT+GGG - chr1_2:62672807-62672826 None:intergenic 40.0%
AAAATACACGTGAATGCGCA+TGG - chr1_2:62672808-62672827 None:intergenic 40.0%
ATCAAGTTTCAGACTCACCT+TGG - chr1_2:62673174-62673193 None:intergenic 40.0%
TATTCAGTGTGCCTGAACAT+TGG + chr1_2:62673271-62673290 Msa0083570:intron 40.0%
ATTGGCGGAGAAAAAATGTG+TGG + chr1_2:62673355-62673374 Msa0083570:CDS 40.0%
!! ATTGCTGTTTGTGATCTACC+TGG + chr1_2:62673503-62673522 Msa0083570:CDS 40.0%
! ACCTCAGAATATGACGGAAA+GGG - chr1_2:62673761-62673780 None:intergenic 40.0%
! TACCTCAGAATATGACGGAA+AGG - chr1_2:62673762-62673781 None:intergenic 40.0%
ACACACATGGATAACTTTGG+GGG - chr1_2:62673811-62673830 None:intergenic 40.0%
CACACACATGGATAACTTTG+GGG - chr1_2:62673812-62673831 None:intergenic 40.0%
GGCTAACAAAAACACACACA+TGG - chr1_2:62673824-62673843 None:intergenic 40.0%
!! GTGTGTTTTTGTTAGCCACA+TGG + chr1_2:62673827-62673846 Msa0083570:three_prime_UTR 40.0%
!! AGCCACATGGACGTTTTAAA+CGG + chr1_2:62673840-62673859 Msa0083570:three_prime_UTR 40.0%
! TTCCGTTTAAAACGTCCATG+TGG - chr1_2:62673845-62673864 None:intergenic 40.0%
GACCAAACATGCAATTTAGC+TGG + chr1_2:62673955-62673974 Msa0083570:three_prime_UTR 40.0%
TTACATGCTGACGAGCTTTA+TGG - chr1_2:62674039-62674058 None:intergenic 40.0%
CTCGTCAGCATGTAATAAGT+GGG + chr1_2:62674044-62674063 Msa0083570:three_prime_UTR 40.0%
GTATGAGGGAACAAAGAGGA+TGG - chr1_2:62669358-62669377 None:intergenic 45.0%
GGTAGTATGAGGGAACAAAG+AGG - chr1_2:62669362-62669381 None:intergenic 45.0%
!! TTCTCTCTAGGACTCTTCCT+AGG + chr1_2:62669634-62669653 Msa0083570:CDS 45.0%
GCATGTTGAGTTCTGTGAAG+TGG - chr1_2:62669681-62669700 None:intergenic 45.0%
CAGAAGACACCATAGCAATC+AGG - chr1_2:62669863-62669882 None:intergenic 45.0%
AGGGATAGAGGTCGGTAATA+TGG + chr1_2:62670370-62670389 Msa0083570:intron 45.0%
AGTAGCAGTTGTCACGATTG+CGG + chr1_2:62670404-62670423 Msa0083570:intron 45.0%
CAATATTGCAGCCGCAATTG+CGG + chr1_2:62670771-62670790 Msa0083570:intron 45.0%
AATATTGCAGCCGCAATTGC+GGG + chr1_2:62670772-62670791 Msa0083570:intron 45.0%
GGTTGCTGTCTTAGCAGTTT+AGG + chr1_2:62671117-62671136 Msa0083570:intron 45.0%
CGTTTGGCCAATGTGTTTAC+AGG + chr1_2:62671318-62671337 Msa0083570:intron 45.0%
GCCAATGTGTTTACAGGAAG+AGG + chr1_2:62671324-62671343 Msa0083570:intron 45.0%
AGGAAGAGGAGACAAAATCC+TGG + chr1_2:62671338-62671357 Msa0083570:intron 45.0%
AGGTCATTGCAAGCTCTTGA+AGG + chr1_2:62671592-62671611 Msa0083570:CDS 45.0%
GCATCTTGGAACACCTCATA+AGG - chr1_2:62671801-62671820 None:intergenic 45.0%
AGGTGTTCCAAGATGCAGAA+TGG + chr1_2:62671805-62671824 Msa0083570:CDS 45.0%
GGTGTTCCAAGATGCAGAAT+GGG + chr1_2:62671806-62671825 Msa0083570:CDS 45.0%
! GCAGAATGGGCTTTGCTAAT+AGG + chr1_2:62671819-62671838 Msa0083570:CDS 45.0%
GCGGCTTTGCTAGACATAAA+TGG + chr1_2:62671873-62671892 Msa0083570:CDS 45.0%
! GCTTTTCCCTGTTGTACACA+TGG - chr1_2:62671992-62672011 None:intergenic 45.0%
!! ACAGGGAAAAGCACTCAATG+CGG + chr1_2:62672000-62672019 Msa0083570:intron 45.0%
TGAGAACAGGGCAAAATGTC+AGG + chr1_2:62672228-62672247 Msa0083570:CDS 45.0%
GTAGAAAACCAATCACCCTC+GGG - chr1_2:62672719-62672738 None:intergenic 45.0%
!!! GAGGGTGATTGGTTTTCTAC+TGG + chr1_2:62672719-62672738 Msa0083570:CDS 45.0%
GATTTCCAGTGGTATACACC+TGG - chr1_2:62672957-62672976 None:intergenic 45.0%
ACACTTGCCTTTGATCGACA+CGG - chr1_2:62673015-62673034 None:intergenic 45.0%
CCTTGGCTAATTTCTGTCGT+AGG - chr1_2:62673157-62673176 None:intergenic 45.0%
CCTACGACAGAAATTAGCCA+AGG + chr1_2:62673154-62673173 Msa0083570:CDS 45.0%
GCAGACAGAAGCTGAGTTAT+TGG + chr1_2:62673337-62673356 Msa0083570:intron 45.0%
GACAGAAGCTGAGTTATTGG+CGG + chr1_2:62673340-62673359 Msa0083570:intron 45.0%
AAATGTGTGGCTCACCTAAC+CGG + chr1_2:62673368-62673387 Msa0083570:CDS 45.0%
! CAATATTTACCTCGCCGGTT+AGG - chr1_2:62673385-62673404 None:intergenic 45.0%
AACCGGCGAGGTAAATATTG+CGG + chr1_2:62673385-62673404 Msa0083570:intron 45.0%
TTACATTTCTCCTGGGAGCA+TGG - chr1_2:62673534-62673553 None:intergenic 45.0%
CTCTGTCAAAAACGTCCATG+TGG + chr1_2:62673783-62673802 Msa0083570:three_prime_UTR 45.0%
GCTCGTCAGCATGTAATAAG+TGG + chr1_2:62674043-62674062 Msa0083570:three_prime_UTR 45.0%
AAAGTACAGCGATGGTGCCT+AGG - chr1_2:62669654-62669673 None:intergenic 50.0%
! GTGGTGCTAAAGTACAGCGA+TGG - chr1_2:62669662-62669681 None:intergenic 50.0%
GTGTCGTGTCCGGTGTATTA+GGG - chr1_2:62670112-62670131 None:intergenic 50.0%
! TATTATCCGTGTCGGCGTGT+CGG - chr1_2:62670134-62670153 None:intergenic 50.0%
! TATAGGTGTCGTGTCGGTGT+CGG + chr1_2:62670184-62670203 Msa0083570:intron 50.0%
AAACTCTGGTATGGGGGGTA+CGG - chr1_2:62670510-62670529 None:intergenic 50.0%
TGTTGTGGTAGCCTCCTCAA+CGG - chr1_2:62670750-62670769 None:intergenic 50.0%
! CGGCTGCAATATTGCTGTTG+TGG - chr1_2:62670765-62670784 None:intergenic 50.0%
! GACTGAGTCTGAGACTGCAA+TGG - chr1_2:62671458-62671477 None:intergenic 50.0%
! CAACAATGCAGGTGTTGCGA+TGG + chr1_2:62671722-62671741 Msa0083570:intron 50.0%
GCAAAGCCCATTCTGCATCT+TGG - chr1_2:62671815-62671834 None:intergenic 50.0%
CTAATAGGTGCAAAGCCTCG+AGG + chr1_2:62671834-62671853 Msa0083570:CDS 50.0%
!! CTTCAGGGCTAGCTACACAT+TGG - chr1_2:62672337-62672356 None:intergenic 50.0%
CAATGTGTAGCTAGCCCTGA+AGG + chr1_2:62672335-62672354 Msa0083570:intron 50.0%
GTAGAAGACACCTGCCTTCA+GGG - chr1_2:62672352-62672371 None:intergenic 50.0%
GGGAAACCACTCAACTACTC+AGG + chr1_2:62672398-62672417 Msa0083570:CDS 50.0%
GCCCGTCAAAGAAGTGATCA+AGG + chr1_2:62672455-62672474 Msa0083570:CDS 50.0%
TTTGATCACTCCTACTCCCG+AGG + chr1_2:62672700-62672719 Msa0083570:CDS 50.0%
TTGATCACTCCTACTCCCGA+GGG + chr1_2:62672701-62672720 Msa0083570:CDS 50.0%
CAATGCCAGGTGTATACCAC+TGG + chr1_2:62672949-62672968 Msa0083570:CDS 50.0%
! CAGTATGCCGTGTCGATCAA+AGG + chr1_2:62673005-62673024 Msa0083570:CDS 50.0%
AAATATTGCGGCCCGAATCG+CGG + chr1_2:62673397-62673416 Msa0083570:intron 50.0%
TGTTTGCGTAGACCGCGATT+CGG - chr1_2:62673412-62673431 None:intergenic 50.0%
GCCCTTTCCGTCATATTCTG+AGG + chr1_2:62673757-62673776 Msa0083570:three_prime_UTR 50.0%
!! ATAACTTTGGGGGTGCCACA+TGG - chr1_2:62673801-62673820 None:intergenic 50.0%
GGATCCTGTGTCTGTACTGC+TGG - chr1_2:62669830-62669849 None:intergenic 55.0%
! GGTGTCGTGTCCGGTGTATT+AGG - chr1_2:62670113-62670132 None:intergenic 55.0%
ATTGAGGTGTGACGCCGTTG+AGG + chr1_2:62670733-62670752 Msa0083570:intron 55.0%
! TGCAGGTGTTGCGATGGAGT+TGG + chr1_2:62671728-62671747 Msa0083570:intron 55.0%
! AGGTGTTGCGATGGAGTTGG+AGG + chr1_2:62671731-62671750 Msa0083570:intron 55.0%
AAAGCCTCGAGGACCTGGAA+TGG + chr1_2:62671845-62671864 Msa0083570:CDS 55.0%
! TGGGCAGATTTTTGCGGAGC+AGG + chr1_2:62671893-62671912 Msa0083570:CDS 55.0%
CGTAGAAGACACCTGCCTTC+AGG - chr1_2:62672353-62672372 None:intergenic 55.0%
CAGGGACCTGAGTAGTTGAG+TGG - chr1_2:62672407-62672426 None:intergenic 55.0%
AACCAATCACCCTCGGGAGT+AGG - chr1_2:62672713-62672732 None:intergenic 55.0%
GGCCGCAATATTTACCTCGC+CGG - chr1_2:62673390-62673409 None:intergenic 55.0%
GTTTGCGTAGACCGCGATTC+GGG - chr1_2:62673411-62673430 None:intergenic 55.0%
CGGACACGCGTCCTAATCTG+AGG + chr1_2:62670204-62670223 Msa0083570:intron 60.0%
GCACGGACGCTCCTCAGATT+AGG - chr1_2:62670218-62670237 None:intergenic 60.0%
AGCAGCACCCGAGACTGCAA+TGG - chr1_2:62671377-62671396 None:intergenic 60.0%
! ATTGCAGTCTCGGGTGCTGC+TGG + chr1_2:62671376-62671395 Msa0083570:CDS 60.0%
AGGACCTGGAATGGAGCGTG+CGG + chr1_2:62671854-62671873 Msa0083570:CDS 60.0%
AAAGCCGCACGCTCCATTCC+AGG - chr1_2:62671861-62671880 None:intergenic 60.0%
GTGTAGCTAGCCCTGAAGGC+AGG + chr1_2:62672339-62672358 Msa0083570:intron 60.0%
!! GACGGGCAACCCATCGATTC+TGG - chr1_2:62672442-62672461 None:intergenic 60.0%
CTCCTACTCCCGAGGGTGAT+TGG + chr1_2:62672708-62672727 Msa0083570:CDS 60.0%
ATGCGCATGGGTCCCGACAT+TGG - chr1_2:62672795-62672814 None:intergenic 60.0%
! CCTGGGAGCATGGTATCACC+AGG - chr1_2:62673524-62673543 None:intergenic 60.0%
CCTGGTGATACCATGCTCCC+AGG + chr1_2:62673521-62673540 Msa0083570:CDS 60.0%
GGCGCCAGCAGTACAGACAC+AGG + chr1_2:62669823-62669842 Msa0083570:CDS 65.0%
ACGACACCGACACGCCGACA+CGG + chr1_2:62670125-62670144 Msa0083570:intron 65.0%
!! GAGGAGCGTCCGTGCTTCGT+AGG + chr1_2:62670223-62670242 Msa0083570:intron 65.0%
! CTCTGGTATGGGGGGTACGG+TGG - chr1_2:62670507-62670526 None:intergenic 65.0%
GAGGTGTGACGCCGTTGAGG+AGG + chr1_2:62670736-62670755 Msa0083570:intron 65.0%
TGCAGCCGCAATTGCGGGTG+CGG + chr1_2:62670777-62670796 Msa0083570:intron 65.0%
GCAGTCCGCACCCGCAATTG+CGG - chr1_2:62670785-62670804 None:intergenic 65.0%
GGTGCAAAGCCTCGAGGACC+TGG + chr1_2:62671840-62671859 Msa0083570:CDS 65.0%
CGCTCCATTCCAGGTCCTCG+AGG - chr1_2:62671852-62671871 None:intergenic 65.0%
TGTGGCTCACCTAACCGGCG+AGG + chr1_2:62673373-62673392 Msa0083570:CDS 65.0%
!! CGGCGTGTCGGTGTCGTGTC+CGG - chr1_2:62670122-62670141 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr1_2 gene 62669130 62674269 62669130 ID=Msa0083570;Name=Msa0083570
chr1_2 mRNA 62669130 62674269 62669130 ID=Msa0083570-mRNA-1;Parent=Msa0083570;Name=Msa0083570-mRNA-1;_AED=0.08;_eAED=0.08;_QI=437|0.75|0.84|1|1|1|13|716|456
chr1_2 exon 62669130 62669727 62669130 ID=Msa0083570-mRNA-1:exon:20855;Parent=Msa0083570-mRNA-1
chr1_2 exon 62669814 62669904 62669814 ID=Msa0083570-mRNA-1:exon:20856;Parent=Msa0083570-mRNA-1
chr1_2 exon 62671340 62671426 62671340 ID=Msa0083570-mRNA-1:exon:20857;Parent=Msa0083570-mRNA-1
chr1_2 exon 62671529 62671613 62671529 ID=Msa0083570-mRNA-1:exon:20858;Parent=Msa0083570-mRNA-1
chr1_2 exon 62671733 62671914 62671733 ID=Msa0083570-mRNA-1:exon:20859;Parent=Msa0083570-mRNA-1
chr1_2 exon 62672004 62672083 62672004 ID=Msa0083570-mRNA-1:exon:20860;Parent=Msa0083570-mRNA-1
chr1_2 exon 62672159 62672249 62672159 ID=Msa0083570-mRNA-1:exon:20861;Parent=Msa0083570-mRNA-1
chr1_2 exon 62672345 62672521 62672345 ID=Msa0083570-mRNA-1:exon:20862;Parent=Msa0083570-mRNA-1
chr1_2 exon 62672620 62672742 62672620 ID=Msa0083570-mRNA-1:exon:20863;Parent=Msa0083570-mRNA-1
chr1_2 exon 62672916 62673032 62672916 ID=Msa0083570-mRNA-1:exon:20864;Parent=Msa0083570-mRNA-1
chr1_2 exon 62673107 62673175 62673107 ID=Msa0083570-mRNA-1:exon:20865;Parent=Msa0083570-mRNA-1
chr1_2 exon 62673341 62673394 62673341 ID=Msa0083570-mRNA-1:exon:20866;Parent=Msa0083570-mRNA-1
chr1_2 exon 62673500 62674269 62673500 ID=Msa0083570-mRNA-1:exon:20867;Parent=Msa0083570-mRNA-1
chr1_2 five_prime_UTR 62669130 62669566 62669130 ID=Msa0083570-mRNA-1:five_prime_utr;Parent=Msa0083570-mRNA-1
chr1_2 CDS 62669567 62669727 62669567 ID=Msa0083570-mRNA-1:cds;Parent=Msa0083570-mRNA-1
chr1_2 CDS 62669814 62669904 62669814 ID=Msa0083570-mRNA-1:cds;Parent=Msa0083570-mRNA-1
chr1_2 CDS 62671340 62671426 62671340 ID=Msa0083570-mRNA-1:cds;Parent=Msa0083570-mRNA-1
chr1_2 CDS 62671529 62671613 62671529 ID=Msa0083570-mRNA-1:cds;Parent=Msa0083570-mRNA-1
chr1_2 CDS 62671733 62671914 62671733 ID=Msa0083570-mRNA-1:cds;Parent=Msa0083570-mRNA-1
chr1_2 CDS 62672004 62672083 62672004 ID=Msa0083570-mRNA-1:cds;Parent=Msa0083570-mRNA-1
chr1_2 CDS 62672159 62672249 62672159 ID=Msa0083570-mRNA-1:cds;Parent=Msa0083570-mRNA-1
chr1_2 CDS 62672345 62672521 62672345 ID=Msa0083570-mRNA-1:cds;Parent=Msa0083570-mRNA-1
chr1_2 CDS 62672620 62672742 62672620 ID=Msa0083570-mRNA-1:cds;Parent=Msa0083570-mRNA-1
chr1_2 CDS 62672916 62673032 62672916 ID=Msa0083570-mRNA-1:cds;Parent=Msa0083570-mRNA-1
chr1_2 CDS 62673107 62673175 62673107 ID=Msa0083570-mRNA-1:cds;Parent=Msa0083570-mRNA-1
chr1_2 CDS 62673341 62673394 62673341 ID=Msa0083570-mRNA-1:cds;Parent=Msa0083570-mRNA-1
chr1_2 CDS 62673500 62673553 62673500 ID=Msa0083570-mRNA-1:cds;Parent=Msa0083570-mRNA-1
chr1_2 three_prime_UTR 62673554 62674269 62673554 ID=Msa0083570-mRNA-1:three_prime_utr;Parent=Msa0083570-mRNA-1
Gene Sequence

>Msa0083570

ATGGCTCTGACACAGTTAAACAACACTTGCTCAAAAACTCAACTTCACTCATCATCACAACTCTCATTTCTCTCTAGGACTCTTCCTAGGCACCATCGCTGTACTTTAGCACCACTTCACAGAACTCAACATGCTAGAATTTCTTGTTCTGTTGCACCAAATCAAGTGCAGGCGCCAGCAGTACAGACACAGGATCCCAAGAGTAAGCCTGATTGCTATGGTGTCTTCTGCCTTACCTATGATTTGAAGGCTGAAGAGGAGACAAAATCCTGGAAGAAATTAATTACCATTGCAGTCTCGGGTGCTGCTGGAATGATTTCCAATCATCTACTTTTCAAGCTTGCATCTGGTGAAGTTTTTGGTCCAAATCAACCTATTGCTCTGAAATTATTAGGATCGGAAAGGTCATTGCAAGCTCTTGAAGGTGTTGCGATGGAGTTGGAGGACTCTTTATTTCCTTTGCTGAGGGAAGTTGTTATTAGCATTGATCCTTATGAGGTGTTCCAAGATGCAGAATGGGCTTTGCTAATAGGTGCAAAGCCTCGAGGACCTGGAATGGAGCGTGCGGCTTTGCTAGACATAAATGGGCAGATTTTTGCGGAGCAGGGAAAAGCACTCAATGCGGTTGCATCTCGCAATGTCAAAGTTATAGTCGTGGGAAACCCTTGCAATACAAAGTCAGCTTGTGCATTAATATGCTTGAAGAATGCTCCAAATATTCCTGCAAAAAATTTCCATGCTTTAACTCGTTTAGATGAGAACAGGGCAAAATGTCAGCTAGCCCTGAAGGCAGGTGTCTTCTACGATAAAGTGTCAAATATGACAATATGGGGAAACCACTCAACTACTCAGGTCCCTGACTTCTTAAATGCCAGAATCGATGGGTTGCCCGTCAAAGAAGTGATCAAGGATCATAAATGGTTAGAGGAAGAGTTCACTGAAAAAGTTCAAAAGAGAGGTGGTGCACTTATTCAAAAATGGGGAAGATCATCTGCTGCATCGACTTCTGTGTCTATAGTTGATGCCATACGATCTTTGATCACTCCTACTCCCGAGGGTGATTGGTTTTCTACTGGTTACTACTTCAATCATACAGTTTGCAATTACATACAATGCCAGGTGTATACCACTGGAAATCCTTATGGAATAGCTGAAGATATTGTTTTCAGTATGCCGTGTCGATCAAAGGCAAGTGGAGATGGTGATTATGAACTTGTCAAGGATGTTATATTTGATGACTACCTACGACAGAAATTAGCCAAGACAGAAGCTGAGTTATTGGCGGAGAAAAAATGTGTGGCTCACCTAACCGGCGAGGGGATTGCTGTTTGTGATCTACCTGGTGATACCATGCTCCCAGGAGAAATGTAA

Protein sequence

>Msa0083570

MALTQLNNTCSKTQLHSSSQLSFLSRTLPRHHRCTLAPLHRTQHARISCSVAPNQVQAPAVQTQDPKSKPDCYGVFCLTYDLKAEEETKSWKKLITIAVSGAAGMISNHLLFKLASGEVFGPNQPIALKLLGSERSLQALEGVAMELEDSLFPLLREVVISIDPYEVFQDAEWALLIGAKPRGPGMERAALLDINGQIFAEQGKALNAVASRNVKVIVVGNPCNTKSACALICLKNAPNIPAKNFHALTRLDENRAKCQLALKAGVFYDKVSNMTIWGNHSTTQVPDFLNARIDGLPVKEVIKDHKWLEEEFTEKVQKRGGALIQKWGRSSAASTSVSIVDAIRSLITPTPEGDWFSTGYYFNHTVCNYIQCQVYTTGNPYGIAEDIVFSMPCRSKASGDGDYELVKDVIFDDYLRQKLAKTEAELLAEKKCVAHLTGEGIAVCDLPGDTMLPGEM*