AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1244260


Find 259 sgRNAs with CRISPR-Local

Find 988 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-GE

Chromosome Type Strat End Strand Name
chr8_2 gene 32073849 32089766 32073849 ID=Msa1244260;Name=Msa1244260
chr8_2 mRNA 32073849 32089766 32073849 ID=Msa1244260-mRNA-1;Parent=Msa1244260;Name=Msa1244260-mRNA-1;_AED=0.12;_eAED=0.12;_QI=50|0.94|0.97|1|0.94|0.97|36|338|1058
chr8_2 exon 32073849 32074285 32073849 ID=Msa1244260-mRNA-1:exon:10580;Parent=Msa1244260-mRNA-1
chr8_2 exon 32074409 32074494 32074409 ID=Msa1244260-mRNA-1:exon:10579;Parent=Msa1244260-mRNA-1
chr8_2 exon 32074666 32074753 32074666 ID=Msa1244260-mRNA-1:exon:10578;Parent=Msa1244260-mRNA-1
chr8_2 exon 32075199 32075300 32075199 ID=Msa1244260-mRNA-1:exon:10577;Parent=Msa1244260-mRNA-1
chr8_2 exon 32075776 32075865 32075776 ID=Msa1244260-mRNA-1:exon:10576;Parent=Msa1244260-mRNA-1
chr8_2 exon 32076603 32076641 32076603 ID=Msa1244260-mRNA-1:exon:10575;Parent=Msa1244260-mRNA-1
chr8_2 exon 32076744 32076848 32076744 ID=Msa1244260-mRNA-1:exon:10574;Parent=Msa1244260-mRNA-1
chr8_2 exon 32076962 32077052 32076962 ID=Msa1244260-mRNA-1:exon:10573;Parent=Msa1244260-mRNA-1
chr8_2 exon 32077143 32077237 32077143 ID=Msa1244260-mRNA-1:exon:10572;Parent=Msa1244260-mRNA-1
chr8_2 exon 32077371 32077589 32077371 ID=Msa1244260-mRNA-1:exon:10571;Parent=Msa1244260-mRNA-1
chr8_2 exon 32077928 32078021 32077928 ID=Msa1244260-mRNA-1:exon:10570;Parent=Msa1244260-mRNA-1
chr8_2 exon 32078448 32078464 32078448 ID=Msa1244260-mRNA-1:exon:10569;Parent=Msa1244260-mRNA-1
chr8_2 exon 32078567 32078638 32078567 ID=Msa1244260-mRNA-1:exon:10568;Parent=Msa1244260-mRNA-1
chr8_2 exon 32079073 32079159 32079073 ID=Msa1244260-mRNA-1:exon:10567;Parent=Msa1244260-mRNA-1
chr8_2 exon 32079239 32079328 32079239 ID=Msa1244260-mRNA-1:exon:10566;Parent=Msa1244260-mRNA-1
chr8_2 exon 32079408 32079470 32079408 ID=Msa1244260-mRNA-1:exon:10565;Parent=Msa1244260-mRNA-1
chr8_2 exon 32079679 32079727 32079679 ID=Msa1244260-mRNA-1:exon:10564;Parent=Msa1244260-mRNA-1
chr8_2 exon 32080416 32080498 32080416 ID=Msa1244260-mRNA-1:exon:10563;Parent=Msa1244260-mRNA-1
chr8_2 exon 32080763 32080834 32080763 ID=Msa1244260-mRNA-1:exon:10562;Parent=Msa1244260-mRNA-1
chr8_2 exon 32081743 32081798 32081743 ID=Msa1244260-mRNA-1:exon:10561;Parent=Msa1244260-mRNA-1
chr8_2 exon 32082305 32082368 32082305 ID=Msa1244260-mRNA-1:exon:10560;Parent=Msa1244260-mRNA-1
chr8_2 exon 32082452 32082553 32082452 ID=Msa1244260-mRNA-1:exon:10559;Parent=Msa1244260-mRNA-1
chr8_2 exon 32082892 32082978 32082892 ID=Msa1244260-mRNA-1:exon:10558;Parent=Msa1244260-mRNA-1
chr8_2 exon 32083251 32083334 32083251 ID=Msa1244260-mRNA-1:exon:10557;Parent=Msa1244260-mRNA-1
chr8_2 exon 32083875 32084001 32083875 ID=Msa1244260-mRNA-1:exon:10556;Parent=Msa1244260-mRNA-1
chr8_2 exon 32084726 32084827 32084726 ID=Msa1244260-mRNA-1:exon:10555;Parent=Msa1244260-mRNA-1
chr8_2 exon 32084945 32085061 32084945 ID=Msa1244260-mRNA-1:exon:10554;Parent=Msa1244260-mRNA-1
chr8_2 exon 32085687 32085757 32085687 ID=Msa1244260-mRNA-1:exon:10553;Parent=Msa1244260-mRNA-1
chr8_2 exon 32086080 32086154 32086080 ID=Msa1244260-mRNA-1:exon:10552;Parent=Msa1244260-mRNA-1
chr8_2 exon 32086453 32086530 32086453 ID=Msa1244260-mRNA-1:exon:10551;Parent=Msa1244260-mRNA-1
chr8_2 exon 32086672 32086727 32086672 ID=Msa1244260-mRNA-1:exon:10550;Parent=Msa1244260-mRNA-1
chr8_2 exon 32087594 32087657 32087594 ID=Msa1244260-mRNA-1:exon:10549;Parent=Msa1244260-mRNA-1
chr8_2 exon 32087765 32087846 32087765 ID=Msa1244260-mRNA-1:exon:10548;Parent=Msa1244260-mRNA-1
chr8_2 exon 32088555 32088622 32088555 ID=Msa1244260-mRNA-1:exon:10547;Parent=Msa1244260-mRNA-1
chr8_2 exon 32089257 32089307 32089257 ID=Msa1244260-mRNA-1:exon:10546;Parent=Msa1244260-mRNA-1
chr8_2 exon 32089465 32089766 32089465 ID=Msa1244260-mRNA-1:exon:10545;Parent=Msa1244260-mRNA-1
chr8_2 five_prime_UTR 32089717 32089766 32089717 ID=Msa1244260-mRNA-1:five_prime_utr;Parent=Msa1244260-mRNA-1
chr8_2 CDS 32089465 32089716 32089465 ID=Msa1244260-mRNA-1:cds;Parent=Msa1244260-mRNA-1
chr8_2 CDS 32089257 32089307 32089257 ID=Msa1244260-mRNA-1:cds;Parent=Msa1244260-mRNA-1
chr8_2 CDS 32088555 32088622 32088555 ID=Msa1244260-mRNA-1:cds;Parent=Msa1244260-mRNA-1
chr8_2 CDS 32087765 32087846 32087765 ID=Msa1244260-mRNA-1:cds;Parent=Msa1244260-mRNA-1
chr8_2 CDS 32087594 32087657 32087594 ID=Msa1244260-mRNA-1:cds;Parent=Msa1244260-mRNA-1
chr8_2 CDS 32086672 32086727 32086672 ID=Msa1244260-mRNA-1:cds;Parent=Msa1244260-mRNA-1
chr8_2 CDS 32086453 32086530 32086453 ID=Msa1244260-mRNA-1:cds;Parent=Msa1244260-mRNA-1
chr8_2 CDS 32086080 32086154 32086080 ID=Msa1244260-mRNA-1:cds;Parent=Msa1244260-mRNA-1
chr8_2 CDS 32085687 32085757 32085687 ID=Msa1244260-mRNA-1:cds;Parent=Msa1244260-mRNA-1
chr8_2 CDS 32084945 32085061 32084945 ID=Msa1244260-mRNA-1:cds;Parent=Msa1244260-mRNA-1
chr8_2 CDS 32084726 32084827 32084726 ID=Msa1244260-mRNA-1:cds;Parent=Msa1244260-mRNA-1
chr8_2 CDS 32083875 32084001 32083875 ID=Msa1244260-mRNA-1:cds;Parent=Msa1244260-mRNA-1
chr8_2 CDS 32083251 32083334 32083251 ID=Msa1244260-mRNA-1:cds;Parent=Msa1244260-mRNA-1
chr8_2 CDS 32082892 32082978 32082892 ID=Msa1244260-mRNA-1:cds;Parent=Msa1244260-mRNA-1
chr8_2 CDS 32082452 32082553 32082452 ID=Msa1244260-mRNA-1:cds;Parent=Msa1244260-mRNA-1
chr8_2 CDS 32082305 32082368 32082305 ID=Msa1244260-mRNA-1:cds;Parent=Msa1244260-mRNA-1
chr8_2 CDS 32081743 32081798 32081743 ID=Msa1244260-mRNA-1:cds;Parent=Msa1244260-mRNA-1
chr8_2 CDS 32080763 32080834 32080763 ID=Msa1244260-mRNA-1:cds;Parent=Msa1244260-mRNA-1
chr8_2 CDS 32080416 32080498 32080416 ID=Msa1244260-mRNA-1:cds;Parent=Msa1244260-mRNA-1
chr8_2 CDS 32079679 32079727 32079679 ID=Msa1244260-mRNA-1:cds;Parent=Msa1244260-mRNA-1
chr8_2 CDS 32079408 32079470 32079408 ID=Msa1244260-mRNA-1:cds;Parent=Msa1244260-mRNA-1
chr8_2 CDS 32079239 32079328 32079239 ID=Msa1244260-mRNA-1:cds;Parent=Msa1244260-mRNA-1
chr8_2 CDS 32079073 32079159 32079073 ID=Msa1244260-mRNA-1:cds;Parent=Msa1244260-mRNA-1
chr8_2 CDS 32078567 32078638 32078567 ID=Msa1244260-mRNA-1:cds;Parent=Msa1244260-mRNA-1
chr8_2 CDS 32078448 32078464 32078448 ID=Msa1244260-mRNA-1:cds;Parent=Msa1244260-mRNA-1
chr8_2 CDS 32077928 32078021 32077928 ID=Msa1244260-mRNA-1:cds;Parent=Msa1244260-mRNA-1
chr8_2 CDS 32077371 32077589 32077371 ID=Msa1244260-mRNA-1:cds;Parent=Msa1244260-mRNA-1
chr8_2 CDS 32077143 32077237 32077143 ID=Msa1244260-mRNA-1:cds;Parent=Msa1244260-mRNA-1
chr8_2 CDS 32076962 32077052 32076962 ID=Msa1244260-mRNA-1:cds;Parent=Msa1244260-mRNA-1
chr8_2 CDS 32076744 32076848 32076744 ID=Msa1244260-mRNA-1:cds;Parent=Msa1244260-mRNA-1
chr8_2 CDS 32076603 32076641 32076603 ID=Msa1244260-mRNA-1:cds;Parent=Msa1244260-mRNA-1
chr8_2 CDS 32075776 32075865 32075776 ID=Msa1244260-mRNA-1:cds;Parent=Msa1244260-mRNA-1
chr8_2 CDS 32075199 32075300 32075199 ID=Msa1244260-mRNA-1:cds;Parent=Msa1244260-mRNA-1
chr8_2 CDS 32074666 32074753 32074666 ID=Msa1244260-mRNA-1:cds;Parent=Msa1244260-mRNA-1
chr8_2 CDS 32074409 32074494 32074409 ID=Msa1244260-mRNA-1:cds;Parent=Msa1244260-mRNA-1
chr8_2 CDS 32074187 32074285 32074187 ID=Msa1244260-mRNA-1:cds;Parent=Msa1244260-mRNA-1
chr8_2 three_prime_UTR 32073849 32074186 32073849 ID=Msa1244260-mRNA-1:three_prime_utr;Parent=Msa1244260-mRNA-1
Gene Sequence

>Msa1244260

ATGATGGGTGCTATCAGTATCATGGCTTTACCACTTGTCATCTCCGTTTTCAAACCTCTCTCCACAACCACCCGCCTCCACTCAACACTCTTACGCCGCCGTCGTTTCACTACCACTACTCTCTCCGCCACCATTTCACCTTCAACTTCTCTCTCTCAAAACACTTCTACTTCTTCTTCTACACACTCCAGCAATTCTTCTTCTCACAACCATTCATCCCTCACTTTCCAGCAAGCCATTCAACGCCTTCAGGAATATTGGGCTTCTGTTGGATGTTCTATTATGCAATGCAGCAATACAGAGGTTGGAGCTGGGACTATGAATCCTCTTACATATTTAAGGGTTCTTGGTCCAGAACCATGGAATGTTGCGTATGTGGAACCTAGCATCCGCCCCGATGATAGTCGATATGGAGAAAACCCGAATAGGCTCCAACGACACACTCAATTTCAGGTAATATTGAAGCCTGATCCTGGAAATTCACAGGACCTTTTTATCCGCAGCCTTTCAGCTTTAGGTATTGATGTTACTGCACATGATATACGATTTGTAGAAGACAACTGGGAGAGTCCGGTTCTTGGTGCGTGGGGTCTGGGGTGGGAAATCTGGATGGACGGAATGGAGATTACTCAATTCACATACTTTCAGCAGGCTGGAAGTCTCCCGTTATCACCAGTGTCGGTAGAAATCACTTATGGCCTGGAGCGTATCCTCATGTTACTGCAGGGAGTTGATCACTTCAAAAAGATCAAATATTCTGATGGAATTACTTACGGAGAACTGTTCTTGGAGAATGAAAAGGAAATGAGTGCGTATTACTTGGAGCATGCCGGTGTTGATCATCTTCAAAAACATTTTGATTTCTTTGAGGAGGAATCTCGTCGTTTACTTTCTTCAGGCCTTGCGATCCCTGCGTATGATCAGCTTCTGAAAACATCTCATGCTTTTAATATTTTAGACGCCAGAGGCTTTGTTGGAGTAACAGAGCGTGCTCGATATTTTGGTCGCATGCGCAGTTTAGCTCGCCAGTGTGCCCAACTTTGGCTGAAGACCAGAGAGACTCTTGGCTTCCCCCTTGGTTTGATCTCGGAACCTGATCAGTCTGTAATACCAAAGGATGTTTTGGAGGCTGCACGTGAGAAGGTTCATGATAATGAAAGAACATTTGTTCTTGAAATTGGAACGGAAGAGATGCCACCTCAAGACGCTGTTGATGCAAGCAAGCAACTGAAAGATTTAATATTGCAATTACTGGAACGACAGAGGTTAAAGCATGGTGAAGTGCAGGTTTTTGGCACTGCACGGAGACTTGTGGTTTCTGTTGAAAATCTTTTCACGAAACAAACAGAACAGGAGGTTGAGGTTCGAGGTCCTCCTGTTTCAAAAGCATTTGATTCTGATGGAAATCCAACAAAGGCTGCTGAGGGGTTTTCCCGTAAAAACTCTGTTCCACTGGACTTGATATACAGAAAGGTCGATGGGAAAACAGAATATGTATATGCTCGTATAAAAGAGTCTTCAAGACATGCTTTGGAGGTTTTATCTGAAGATTTACCTGCTACTATTGCTAAAATTTCATTTCCAAAGACAATGCGTTGGAACTCACAGGTGATGTTTAGCAGGCCAATCCGTTGGATTTTGGCCTTGCATGGAGATGTTGTGGTCCCATTTATGTTCGCTGGGGTAACGAGTGGAAACTTGTCTTGCGGTCTTCGTAATACGACATCAGCCGTTGTCCAGATAGAAAATGCAGAATCTTATTCACTTGCAATGAAAAATACAGGAGTCAATGTTGAATTTGAGGACCGTAAGAAAAAAATTGTAGAACAATCTAATACATTAGCAGAAAGTGTAAATGGCGAAATTCTGATTCCAAAAGGTTTGCTTGACGAGGTTGTAAATCTTGTTGAGGCACCTATTCCAGTGCTTGGAAAGTTTAAAGAAACCTTCTTAGATCTTCCAAAGGATCTTTTGACTATGGTTATGCAAAAACACCAGAAATATTTTGCTGTATGTGATGCTGATGGACAATTGCTGCCTTACTTTATTGCTCAATTGATGAAGCTACAGGCTCGCTATGAAGATGCTAAGTTCTTTTATGAGTTGGACACTCGTAAAAGGTTTTCAGAATTCCGAGAGCAACTGAAAAATATTCTCTTTCATGAGAAACTTGGGACCATGCTGGACAAAATGACTCGTGTTGAAAACATGGTTACTAAGCTAAGTTGCATCCTGGATATTAATGAAGATACACAACAAATTATCCGGGAAGCTGCCTCACTTGCCATGTCTGACCTTTCCACATCAGTTGTCACTGAGTTTACTGCACTTTCAGGAGTAATGGGGCGTCACTATGCCCTTAGAGATGGATACTCACAACAGACTGCAGAGGCCTTGTATGAGATCACACTTCCTAGATTTTCTGGGGACATACTTCCTAAAAGTGACGCTGGCATAGTTTTGGCAATTGCTGATAGATTAGATAGCTTGGTAGGTTTATTCTCGGCTGGCTGTCAACCTAGTTCCACAAATGATCCATTTGGTCTGCGAAGAATCTCATATGGTCTTGTGCAATTGTTGGTGGAAAATAATAAAAACCTAGATTTTAAAGAGGCTCTGGAACTTGCTGCAGATGTCCAGCCAATTAAAGTAAATCCTCAAGTAATAGACGAAGCACTTCAATTTGTTACTCGAAGATTAGAGCAATTTCTGGTGGACAAGGGGGTGAGTGCAGAAATTGTTCGTTCCATCCTTGCAGAGAGGGCCAATTTTCCCGGTCTAGCAGCAAAATCAGCATATAAAATGGAAGAATTATCAAAAGGCGAGCTTTTCCCTAAAGTAGTTGAAGCATACTCTCGGCCAACTAGAATTGTCCGTGGGAAGGAAGACGAGCTTGATTCGGAGTATCAGGTGGATGAGGCTGCCTTTGAGACAAATGAAGAGAGAGTTTTGTGGAACACATTTTTGTCAGTTAAAAAGAGTATCAATCCTGGTCTAGACATCGATGATTTTGTTGAAATTTCATCTCAGCTTATACAACCACTCGAAGATTTCTTTAATAACGTCTTTGTAATGGTGGATGATGCTAAGATCAGAAAAAACAGGCTAGCTCTGCTAAAAGAAATTGCTGATCTCCCTAAAGGAATTGCAGACCTTACATTGTTACCAGGATTTTAA

Protein sequence

>Msa1244260

MMGAISIMALPLVISVFKPLSTTTRLHSTLLRRRRFTTTTLSATISPSTSLSQNTSTSSSTHSSNSSSHNHSSLTFQQAIQRLQEYWASVGCSIMQCSNTEVGAGTMNPLTYLRVLGPEPWNVAYVEPSIRPDDSRYGENPNRLQRHTQFQVILKPDPGNSQDLFIRSLSALGIDVTAHDIRFVEDNWESPVLGAWGLGWEIWMDGMEITQFTYFQQAGSLPLSPVSVEITYGLERILMLLQGVDHFKKIKYSDGITYGELFLENEKEMSAYYLEHAGVDHLQKHFDFFEEESRRLLSSGLAIPAYDQLLKTSHAFNILDARGFVGVTERARYFGRMRSLARQCAQLWLKTRETLGFPLGLISEPDQSVIPKDVLEAAREKVHDNERTFVLEIGTEEMPPQDAVDASKQLKDLILQLLERQRLKHGEVQVFGTARRLVVSVENLFTKQTEQEVEVRGPPVSKAFDSDGNPTKAAEGFSRKNSVPLDLIYRKVDGKTEYVYARIKESSRHALEVLSEDLPATIAKISFPKTMRWNSQVMFSRPIRWILALHGDVVVPFMFAGVTSGNLSCGLRNTTSAVVQIENAESYSLAMKNTGVNVEFEDRKKKIVEQSNTLAESVNGEILIPKGLLDEVVNLVEAPIPVLGKFKETFLDLPKDLLTMVMQKHQKYFAVCDADGQLLPYFIAQLMKLQARYEDAKFFYELDTRKRFSEFREQLKNILFHEKLGTMLDKMTRVENMVTKLSCILDINEDTQQIIREAASLAMSDLSTSVVTEFTALSGVMGRHYALRDGYSQQTAEALYEITLPRFSGDILPKSDAGIVLAIADRLDSLVGLFSAGCQPSSTNDPFGLRRISYGLVQLLVENNKNLDFKEALELAADVQPIKVNPQVIDEALQFVTRRLEQFLVDKGVSAEIVRSILAERANFPGLAAKSAYKMEELSKGELFPKVVEAYSRPTRIVRGKEDELDSEYQVDEAAFETNEERVLWNTFLSVKKSINPGLDIDDFVEISSQLIQPLEDFFNNVFVMVDDAKIRKNRLALLKEIADLPKGIADLTLLPGF*