AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0456940


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0456940 MtrunA17_Chr1g0213971 96.721 244 6 1 2 245 3 244 1.18e-172 475
Msa0456940 MtrunA17_Chr7g0270991 63.590 195 68 1 50 244 68 259 2.72e-88 262
Msa0456940 MtrunA17_Chr1g0193711 61.905 210 72 3 40 244 43 249 1.70e-86 257
Msa0456940 MtrunA17_Chr3g0104751 61.957 184 59 3 68 244 24 203 1.15e-72 220
Msa0456940 MtrunA17_Chr3g0113441 55.288 208 68 5 56 242 28 231 3.23e-68 210
Msa0456940 MtrunA17_Chr3g0145501 61.404 171 55 3 79 242 13 179 3.75e-68 208
Msa0456940 MtrunA17_Chr7g0274841 59.649 171 58 3 79 242 5 171 8.33e-67 204
Msa0456940 MtrunA17_Chr4g0038431 60.920 174 57 3 76 242 2 171 9.60e-67 204
Msa0456940 MtrunA17_Chr8g0374621 57.558 172 62 2 79 242 5 173 1.89e-61 197
Msa0456940 MtrunA17_Chr4g0037281 49.485 194 89 2 57 243 25 216 1.68e-58 185
Msa0456940 MtrunA17_Chr4g0045321 54.913 173 67 2 79 243 5 174 2.64e-58 189
Msa0456940 MtrunA17_Chr8g0353571 52.688 186 79 3 63 242 3 185 7.34e-58 182
Msa0456940 MtrunA17_Chr7g0260441 56.322 174 64 3 80 245 9 178 3.68e-55 187
Msa0456940 MtrunA17_Chr2g0321111 54.167 144 61 3 94 236 470 609 1.44e-42 152
Msa0456940 MtrunA17_Chr7g0266721 49.306 144 68 4 94 236 18 157 2.60e-39 134
Msa0456940 MtrunA17_Chr3g0138061 46.199 171 78 4 80 241 12 177 3.60e-37 138
Msa0456940 MtrunA17_Chr8g0351571 47.586 145 71 4 94 237 9 149 1.66e-36 126
Msa0456940 MtrunA17_Chr3g0122871 56.667 120 24 3 138 230 1 119 1.13e-34 120
Msa0456940 MtrunA17_Chr1g0149061 47.333 150 65 4 80 220 9 153 5.70e-33 126
Msa0456940 MtrunA17_Chr5g0401141 47.222 144 71 4 95 237 354 493 4.85e-31 120
Msa0456940 MtrunA17_Chr2g0288371 43.972 141 70 7 95 231 22 157 1.94e-21 92.4
Msa0456940 MtrunA17_Chr6g0484281 39.869 153 77 6 94 236 9 156 1.57e-19 87.4
Msa0456940 MtrunA17_Chr8g0357591 39.216 153 78 6 94 236 9 156 3.17e-18 83.6
Msa0456940 MtrunA17_Chr2g0305071 27.869 244 114 10 64 245 44 287 1.98e-16 77.0
Msa0456940 MtrunA17_Chr1g0199071 35.811 148 72 7 95 236 89 219 2.50e-14 70.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0456940 AT5G13120.2 83.237 173 29 0 73 245 81 253 1.05e-111 322
Msa0456940 AT5G13120.1 83.237 173 29 0 73 245 85 257 1.44e-111 321
Msa0456940 AT3G62030.1 66.321 193 61 2 53 244 69 258 8.14e-90 266
Msa0456940 AT3G62030.3 65.625 192 63 1 53 244 69 257 1.07e-89 266
Msa0456940 AT3G62030.2 66.321 193 61 2 53 244 122 311 4.93e-89 266
Msa0456940 AT2G29960.1 62.712 177 55 3 75 244 29 201 5.56e-72 219
Msa0456940 AT2G29960.3 62.712 177 55 3 75 244 29 201 5.56e-72 219
Msa0456940 AT5G58710.1 62.147 177 56 3 75 244 32 204 1.80e-71 218
Msa0456940 AT2G21130.1 62.573 171 53 3 79 242 6 172 2.01e-70 214
Msa0456940 AT2G16600.1 61.988 171 54 3 79 242 6 172 2.67e-69 211
Msa0456940 AT4G38740.1 60.819 171 56 3 79 242 5 171 4.97e-68 207
Msa0456940 AT3G56070.1 59.064 171 59 3 79 242 5 171 1.58e-66 204
Msa0456940 AT3G56070.2 59.064 171 59 3 79 242 5 171 1.58e-66 204
Msa0456940 AT3G55920.1 59.322 177 59 4 76 244 57 228 2.44e-65 202
Msa0456940 AT4G34870.1 60.234 171 57 3 79 242 5 171 7.90e-65 199
Msa0456940 AT2G29960.2 59.322 177 51 4 75 244 29 191 7.97e-64 197
Msa0456940 AT4G34960.1 52.128 188 80 2 63 243 32 216 2.99e-59 187
Msa0456940 AT2G15790.1 57.225 173 63 2 79 243 5 174 9.11e-59 190
Msa0456940 AT2G16600.2 57.317 164 51 3 79 242 6 150 1.93e-58 182
Msa0456940 AT2G38730.1 55.621 169 66 3 80 242 34 199 8.27e-58 182
Msa0456940 AT3G63400.2 59.412 170 57 3 80 241 9 174 3.43e-57 187
Msa0456940 AT3G63400.3 59.412 170 57 3 80 241 9 174 1.38e-55 187
Msa0456940 AT3G63400.4 59.412 170 57 3 80 241 9 174 1.38e-55 187
Msa0456940 AT3G63400.1 59.412 170 57 3 80 241 9 174 1.38e-55 187
Msa0456940 AT4G34960.2 53.846 143 56 2 63 198 32 171 6.47e-45 149
Msa0456940 AT3G44600.1 54.167 144 61 3 94 236 484 623 1.27e-42 153
Msa0456940 AT2G36130.1 47.917 144 70 4 94 236 18 157 1.05e-39 135
Msa0456940 AT1G01940.1 46.897 145 72 4 94 237 9 149 1.44e-37 129
Msa0456940 AT3G22920.1 45.714 175 72 8 79 242 5 167 9.34e-32 117
Msa0456940 AT5G67530.1 46.853 143 71 4 95 236 353 491 1.28e-31 122
Msa0456940 AT4G32420.1 41.808 177 89 4 75 242 4 175 2.50e-29 116
Msa0456940 AT4G32420.5 41.808 177 89 4 75 242 4 175 2.50e-29 116
Msa0456940 AT4G32420.3 41.808 177 89 4 75 242 4 175 2.50e-29 116
Msa0456940 AT4G32420.6 41.808 177 89 4 75 242 4 175 2.50e-29 116
Msa0456940 AT4G32420.4 43.226 155 75 3 75 220 4 154 8.92e-28 111
Msa0456940 AT4G33060.1 44.681 141 69 7 95 231 22 157 1.75e-24 101
Msa0456940 AT1G53720.2 40.789 152 77 5 94 236 9 156 1.40e-22 95.1
Msa0456940 AT1G53720.1 40.789 152 77 5 94 236 9 156 1.21e-21 93.6

Find 118 sgRNAs with CRISPR-Local

Find 296 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CACTGATTGTCACCTTCTTT+AGG 0.241303 3_3:-51239350 None:intergenic
GATCAGAGGCATGTTGTATT+TGG 0.249985 3_3:+51239258 Msa0456940:CDS
TTCATAAATCTAAATCAGTT+TGG 0.255873 3_3:+51239527 Msa0456940:three_prime_UTR
AAATGAGTTTAAGTTATTCT+AGG 0.267655 3_3:-51239606 None:intergenic
ACTGATTGTCACCTTCTTTA+GGG 0.273487 3_3:-51239349 None:intergenic
TCATAAATCTAAATCAGTTT+GGG 0.286580 3_3:+51239528 Msa0456940:three_prime_UTR
TGGAAGGCATGGACATTGTT+AGG 0.309018 3_3:+51239289 Msa0456940:CDS
GTGTGGAGAAAGGGAGTTAA+TGG 0.327858 3_3:+51239758 Msa0456940:three_prime_UTR
AAGGGGTGAGCAATTGTTCT+AGG 0.335856 3_3:+51239735 Msa0456940:three_prime_UTR
TATATTACCAGTGAGTAAAT+TGG 0.345409 3_3:-51238271 None:intergenic
CAAGGAGGAGACTTTGATAA+AGG 0.345816 3_3:+51238739 Msa0456940:CDS
TATAAGGTCTATATAATAAT+GGG 0.346726 3_3:+51238093 Msa0456940:five_prime_UTR
AAAGTGAGGGCAGTGGAAAA+TGG 0.351843 3_3:+51238487 Msa0456940:CDS
TGTTGTATTTGGCCAAGTTT+TGG 0.352436 3_3:+51239269 Msa0456940:CDS
GTGGATTGAGTAGTGTTATA+AGG 0.355070 3_3:+51238077 Msa0456940:five_prime_UTR
ATCCTTCCTTCCTTCTTCTT+CGG 0.363859 3_3:+51238198 Msa0456940:five_prime_UTR
TTATAAGGTCTATATAATAA+TGG 0.372001 3_3:+51238092 Msa0456940:five_prime_UTR
TCCACCGGTGAGAAGGGCTT+TGG 0.377046 3_3:+51238670 Msa0456940:CDS
AACAAAACATGTCAAGCAAT+TGG 0.393584 3_3:-51239387 None:intergenic
CTTCCAACCAGCTTCCCAAC+TGG 0.403156 3_3:-51238586 None:intergenic
ACTGGAGGCAAAAGTATCTA+TGG 0.406648 3_3:+51238841 Msa0456940:CDS
GCATCTCCGTCGGGGTGGTT+AGG 0.409454 3_3:+51238416 Msa0456940:CDS
TTATTTCTATCTCTATGAAA+TGG 0.409659 3_3:+51238029 None:intergenic
ATCTATCTATCTCAGGGAAC+TGG 0.410193 3_3:+51238823 Msa0456940:intron
GGAAGTTCTCAACAGTTTGC+GGG 0.417261 3_3:-51238639 None:intergenic
TGCCCTTTCCACCGGTGAGA+AGG 0.418329 3_3:+51238663 Msa0456940:CDS
TTGAGTTGAATAGATAGATT+AGG 0.424055 3_3:+51238140 Msa0456940:five_prime_UTR
TTCTTTGTTTCTTGCTGCTG+AGG 0.427286 3_3:+51239422 Msa0456940:three_prime_UTR
GGTTTGATAATTCATCCATT+GGG 0.430186 3_3:+51238116 Msa0456940:five_prime_UTR
GTATTCTTTGATGTTAGTAT+TGG 0.430298 3_3:+51238559 Msa0456940:CDS
AACTGACTCCCATTGGTGTT+GGG 0.430322 3_3:-51239111 None:intergenic
GCCCTTCTCACCGGTGGAAA+GGG 0.431866 3_3:-51238665 None:intergenic
GGTGGTTAGGTCCCGAGGTG+TGG 0.434983 3_3:+51238429 Msa0456940:CDS
TGCTTAATCAGCAGTTGAGT+GGG 0.435663 3_3:+51239628 Msa0456940:three_prime_UTR
AGGATTGTGATAGGACTCTT+TGG 0.436041 3_3:+51238607 Msa0456940:CDS
TTGTGTTGAAAGACTGGTAA+AGG 0.449776 3_3:+51239716 Msa0456940:three_prime_UTR
GTGGTTAGGTCCCGAGGTGT+GGG 0.453738 3_3:+51238430 Msa0456940:CDS
ACATTGGCAGACGCCGTGGC+TGG 0.454530 3_3:+51239236 Msa0456940:intron
TGGAAATCCAGTTGGGAAGC+TGG 0.456366 3_3:+51238579 Msa0456940:CDS
TTGTTCTAGGGTGTGGAGAA+AGG 0.457709 3_3:+51239748 Msa0456940:three_prime_UTR
TGTTAGGTTGATTGAATCAC+AGG 0.461699 3_3:+51239305 Msa0456940:CDS
CTAAAAGAAGCATCTCCGTC+GGG 0.471283 3_3:+51238407 Msa0456940:CDS
GGGTTTGATAATTCATCCAT+TGG 0.474178 3_3:+51238115 Msa0456940:five_prime_UTR
AGCCCTTCTCACCGGTGGAA+AGG 0.480339 3_3:-51238666 None:intergenic
TTTCTAACATCAATGTCTCT+TGG 0.480913 3_3:-51239583 None:intergenic
TATACATTGTGTTGAAAGAC+TGG 0.481340 3_3:+51239710 Msa0456940:three_prime_UTR
AACTTCCGTGCCCTTTCCAC+CGG 0.482955 3_3:+51238655 Msa0456940:CDS
GCCCTTTCCACCGGTGAGAA+GGG 0.484178 3_3:+51238664 Msa0456940:CDS
TGTCCATGCCTTCCAAAACT+TGG 0.486542 3_3:-51239281 None:intergenic
ATCAAGGACTTCATGATTCA+AGG 0.494593 3_3:+51238721 Msa0456940:CDS
TGAGCAATTGTTCTAGGGTG+TGG 0.497517 3_3:+51239741 Msa0456940:three_prime_UTR
CATGCTAACAGCTCCTGGTC+CGG 0.506814 3_3:-51239076 None:intergenic
TGTTCTAGGGTGTGGAGAAA+GGG 0.509623 3_3:+51239749 Msa0456940:three_prime_UTR
ATGCTGGTCCCAACACCAAT+GGG 0.515041 3_3:+51239103 Msa0456940:CDS
CACCTTCCATCGCGTCATCA+AGG 0.515078 3_3:+51238705 Msa0456940:CDS
GTTAGTATTGGAAATCCAGT+TGG 0.515418 3_3:+51238571 Msa0456940:CDS
CCAGTGTCTCATACCGGACC+AGG 0.515423 3_3:+51239063 Msa0456940:intron
TTCGGTGTTTAACCAACCGA+TGG 0.517897 3_3:+51238216 Msa0456940:exon
CTGATTGTCACCTTCTTTAG+GGG 0.526723 3_3:-51239348 None:intergenic
CGGAAGTTCTCAACAGTTTG+CGG 0.530427 3_3:-51238640 None:intergenic
TTTGCCATGCTAACAGCTCC+TGG 0.534982 3_3:-51239081 None:intergenic
TGTGTTGAAAGACTGGTAAA+GGG 0.536640 3_3:+51239717 Msa0456940:three_prime_UTR
GCTGTTAGCATGGCAAATGC+TGG 0.538859 3_3:+51239087 Msa0456940:CDS
TCGCGCGTGCGTTAAAATTG+AGG 0.540242 3_3:-51238174 None:intergenic
TAGTTTCACACCCACACCTC+GGG 0.541866 3_3:-51238440 None:intergenic
TGGTTAAACACCGAAGAAGA+AGG 0.547719 3_3:-51238208 None:intergenic
AATGCTGGTCCCAACACCAA+TGG 0.549301 3_3:+51239102 Msa0456940:CDS
AGACGCCGTGGCTGGATCAG+AGG 0.549918 3_3:+51239244 Msa0456940:intron
CAGTTGGGAAGCTGGTTGGA+AGG 0.554098 3_3:+51238587 Msa0456940:CDS
CACCGAAGAAGAAGGAAGGA+AGG 0.554438 3_3:-51238200 None:intergenic
TTAGTATTGGAAATCCAGTT+GGG 0.555401 3_3:+51238572 Msa0456940:CDS
CTTGATGACGCGATGGAAGG+TGG 0.555450 3_3:-51238704 None:intergenic
CTGGTTGGAAGGATTGTGAT+AGG 0.560590 3_3:+51238598 Msa0456940:CDS
AAACTGACTCCCATTGGTGT+TGG 0.561474 3_3:-51239112 None:intergenic
TGGTGATCGTCCCCTAAAGA+AGG 0.561937 3_3:+51239338 Msa0456940:CDS
TTGCTTAATCAGCAGTTGAG+TGG 0.562436 3_3:+51239627 Msa0456940:three_prime_UTR
AATCCAGTTGGGAAGCTGGT+TGG 0.562899 3_3:+51238583 Msa0456940:CDS
AACACCGCCAATTTACTCAC+TGG 0.562922 3_3:+51238264 Msa0456940:CDS
GTCGGGGTGGTTAGGTCCCG+AGG 0.565995 3_3:+51238424 Msa0456940:CDS
AATGGTGAGGTGTGCACAGT+TGG 0.570498 3_3:+51239776 Msa0456940:three_prime_UTR
CATAAATCTAAATCAGTTTG+GGG 0.574747 3_3:+51239529 Msa0456940:three_prime_UTR
ATGCAGCAGCAGCCATCGGT+TGG 0.576471 3_3:-51238228 None:intergenic
GCCAAAGCCCTTCTCACCGG+TGG 0.577439 3_3:-51238671 None:intergenic
ATAAGGTCTATATAATAATG+GGG 0.584085 3_3:+51238094 Msa0456940:five_prime_UTR
AGGGGTGAGCAATTGTTCTA+GGG 0.591410 3_3:+51239736 Msa0456940:three_prime_UTR
TCTCACCGGTGGAAAGGGCA+CGG 0.594226 3_3:-51238660 None:intergenic
GTAGCCAAAGCCCTTCTCAC+CGG 0.594772 3_3:-51238674 None:intergenic
ATTACCAGTGAGTAAATTGG+CGG 0.595758 3_3:-51238268 None:intergenic
GGAAAATGGTAGTAGTTCAG+AGG 0.600784 3_3:+51238501 Msa0456940:CDS
CGGACCAGGAGCTGTTAGCA+TGG 0.603520 3_3:+51239077 Msa0456940:CDS
TCTATTCAACTCAAACCCAA+TGG 0.605314 3_3:-51238131 None:intergenic
CCTAAAAGAAGCATCTCCGT+CGG 0.606730 3_3:+51238406 Msa0456940:CDS
TATCTATCTCAGGGAACTGG+AGG 0.613700 3_3:+51238826 Msa0456940:intron
TAAGGTCTATATAATAATGG+GGG 0.614396 3_3:+51238095 Msa0456940:five_prime_UTR
ACAAGTGAAAGTGAGGGCAG+TGG 0.614839 3_3:+51238480 Msa0456940:CDS
TTGAATGCAGCAGCAGCCAT+CGG 0.616311 3_3:-51238232 None:intergenic
CTAGTTTCACACCCACACCT+CGG 0.617486 3_3:-51238441 None:intergenic
TACGACGACAAGTGAAAGTG+AGG 0.618754 3_3:+51238473 Msa0456940:CDS
CATGACATTGGCAGACGCCG+TGG 0.622061 3_3:+51239232 Msa0456940:intron
AAAACAAAATATTGAGAGAG+CGG 0.622204 3_3:-51239459 None:intergenic
GTCCTTGATGACGCGATGGA+AGG 0.624852 3_3:-51238707 None:intergenic
TGAAGTCCTTGATGACGCGA+TGG 0.626809 3_3:-51238711 None:intergenic
ATATCTCCAGTGTCTCATAC+CGG 0.627003 3_3:+51239057 Msa0456940:intron
GATGACGCGATGGAAGGTGG+AGG 0.631465 3_3:-51238701 None:intergenic
GTGGGTGTGAAACTAGCAGT+AGG 0.631670 3_3:+51238448 Msa0456940:CDS
CGCGTGCGTTAAAATTGAGG+AGG 0.637884 3_3:-51238171 None:intergenic
GCTTAATCAGCAGTTGAGTG+GGG 0.643968 3_3:+51239629 Msa0456940:three_prime_UTR
TAAACACCGAAGAAGAAGGA+AGG 0.644337 3_3:-51238204 None:intergenic
GAATCACAGGAGACTGATCG+TGG 0.655138 3_3:+51239318 Msa0456940:CDS
TCGGGACCTAACCACCCCGA+CGG 0.658560 3_3:-51238422 None:intergenic
AAGAAGCATCTCCGTCGGGG+TGG 0.659605 3_3:+51238411 Msa0456940:CDS
ACATGCCTCTGATCCAGCCA+CGG 0.671333 3_3:-51239249 None:intergenic
AAGGTGACAATCAGTGACTG+TGG 0.689468 3_3:+51239357 Msa0456940:CDS
TAAAAGAAGCATCTCCGTCG+GGG 0.693386 3_3:+51238408 Msa0456940:CDS
ACGACGACAAGTGAAAGTGA+GGG 0.708194 3_3:+51238474 Msa0456940:CDS
GTGTTGAAAGACTGGTAAAG+GGG 0.712385 3_3:+51239718 Msa0456940:three_prime_UTR
AAGGACTTCATGATTCAAGG+AGG 0.745105 3_3:+51238724 Msa0456940:CDS
GAGAAAGGGAGTTAATGGTG+AGG 0.767774 3_3:+51239763 Msa0456940:three_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTATAAGGTCTATATAATAA+TGG + chr3_3:51238092-51238111 Msa0456940:five_prime_UTR 15.0%
!! TATAAGGTCTATATAATAAT+GGG + chr3_3:51238093-51238112 Msa0456940:five_prime_UTR 15.0%
!! CATCAATTAAATTTAAGTAA+TGG - chr3_3:51238305-51238324 None:intergenic 15.0%
!!! ATAAGTTGATGAATAAAAAA+AGG - chr3_3:51238801-51238820 None:intergenic 15.0%
!!! ATTTTAGTTTAGTTTAGTTT+AGG + chr3_3:51238981-51239000 Msa0456940:intron 15.0%
!! TTATAAGGTCTATATAATAA+TGG + chr3_3:51238092-51238111 Msa0456940:five_prime_UTR 15.0%
!! TATAAGGTCTATATAATAAT+GGG + chr3_3:51238093-51238112 Msa0456940:five_prime_UTR 15.0%
!! CATCAATTAAATTTAAGTAA+TGG - chr3_3:51238305-51238324 None:intergenic 15.0%
!!! ATAAGTTGATGAATAAAAAA+AGG - chr3_3:51238801-51238820 None:intergenic 15.0%
!!! ATTTTAGTTTAGTTTAGTTT+AGG + chr3_3:51238981-51239000 Msa0456940:intron 15.0%
!!! TTTTGTTTTCTTTTGATTAG+TGG + chr3_3:51238058-51238077 Msa0456940:five_prime_UTR 20.0%
!! ATAAGGTCTATATAATAATG+GGG + chr3_3:51238094-51238113 Msa0456940:five_prime_UTR 20.0%
!! TATTAATTGATTGATTGTCT+TGG + chr3_3:51238338-51238357 Msa0456940:intron 20.0%
!! AATAAAATAAACACAGTGAA+GGG - chr3_3:51238964-51238983 None:intergenic 20.0%
!! AAATAAAATAAACACAGTGA+AGG - chr3_3:51238965-51238984 None:intergenic 20.0%
!!! TACTTTTAATTCTCTCTTAT+CGG + chr3_3:51239168-51239187 Msa0456940:intron 20.0%
!!! TCTCAATATTTTGTTTTGTA+TGG + chr3_3:51239465-51239484 Msa0456940:three_prime_UTR 20.0%
!!! AATATTTTGTTTTGTATGGA+TGG + chr3_3:51239469-51239488 Msa0456940:three_prime_UTR 20.0%
!!! ATATTTTGTTTTGTATGGAT+GGG + chr3_3:51239470-51239489 Msa0456940:three_prime_UTR 20.0%
!! TTCATAAATCTAAATCAGTT+TGG + chr3_3:51239527-51239546 Msa0456940:three_prime_UTR 20.0%
!! TCATAAATCTAAATCAGTTT+GGG + chr3_3:51239528-51239547 Msa0456940:three_prime_UTR 20.0%
!!! AAATGAGTTTAAGTTATTCT+AGG - chr3_3:51239609-51239628 None:intergenic 20.0%
!!! TTTTGTTTTCTTTTGATTAG+TGG + chr3_3:51238058-51238077 Msa0456940:five_prime_UTR 20.0%
!! ATAAGGTCTATATAATAATG+GGG + chr3_3:51238094-51238113 Msa0456940:five_prime_UTR 20.0%
!! TATTAATTGATTGATTGTCT+TGG + chr3_3:51238338-51238357 Msa0456940:intron 20.0%
!! AATAAAATAAACACAGTGAA+GGG - chr3_3:51238964-51238983 None:intergenic 20.0%
!! AAATAAAATAAACACAGTGA+AGG - chr3_3:51238965-51238984 None:intergenic 20.0%
!!! TACTTTTAATTCTCTCTTAT+CGG + chr3_3:51239168-51239187 Msa0456940:intron 20.0%
!!! TCTCAATATTTTGTTTTGTA+TGG + chr3_3:51239465-51239484 Msa0456940:three_prime_UTR 20.0%
!!! AATATTTTGTTTTGTATGGA+TGG + chr3_3:51239469-51239488 Msa0456940:three_prime_UTR 20.0%
!!! ATATTTTGTTTTGTATGGAT+GGG + chr3_3:51239470-51239489 Msa0456940:three_prime_UTR 20.0%
!! TTCATAAATCTAAATCAGTT+TGG + chr3_3:51239527-51239546 Msa0456940:three_prime_UTR 20.0%
!! TCATAAATCTAAATCAGTTT+GGG + chr3_3:51239528-51239547 Msa0456940:three_prime_UTR 20.0%
!!! AAATGAGTTTAAGTTATTCT+AGG - chr3_3:51239609-51239628 None:intergenic 20.0%
! TAAGGTCTATATAATAATGG+GGG + chr3_3:51238095-51238114 Msa0456940:five_prime_UTR 25.0%
!!! TTGAGTTGAATAGATAGATT+AGG + chr3_3:51238140-51238159 Msa0456940:five_prime_UTR 25.0%
! TATATTACCAGTGAGTAAAT+TGG - chr3_3:51238274-51238293 None:intergenic 25.0%
! GTATTCTTTGATGTTAGTAT+TGG + chr3_3:51238559-51238578 Msa0456940:CDS 25.0%
!! GTTGATGAATAAAAAAAGGA+AGG - chr3_3:51238797-51238816 None:intergenic 25.0%
! TTATCTATCTATCTATCTCA+GGG + chr3_3:51238817-51238836 Msa0456940:intron 25.0%
! ATAAAATAAACACAGTGAAG+GGG - chr3_3:51238963-51238982 None:intergenic 25.0%
! AAAACAAAATATTGAGAGAG+CGG - chr3_3:51239462-51239481 None:intergenic 25.0%
! CATAAATCTAAATCAGTTTG+GGG + chr3_3:51239529-51239548 Msa0456940:three_prime_UTR 25.0%
! TAAGGTCTATATAATAATGG+GGG + chr3_3:51238095-51238114 Msa0456940:five_prime_UTR 25.0%
!!! TTGAGTTGAATAGATAGATT+AGG + chr3_3:51238140-51238159 Msa0456940:five_prime_UTR 25.0%
! TATATTACCAGTGAGTAAAT+TGG - chr3_3:51238274-51238293 None:intergenic 25.0%
! GTATTCTTTGATGTTAGTAT+TGG + chr3_3:51238559-51238578 Msa0456940:CDS 25.0%
!! GTTGATGAATAAAAAAAGGA+AGG - chr3_3:51238797-51238816 None:intergenic 25.0%
! TTATCTATCTATCTATCTCA+GGG + chr3_3:51238817-51238836 Msa0456940:intron 25.0%
! ATAAAATAAACACAGTGAAG+GGG - chr3_3:51238963-51238982 None:intergenic 25.0%
! AAAACAAAATATTGAGAGAG+CGG - chr3_3:51239462-51239481 None:intergenic 25.0%
! CATAAATCTAAATCAGTTTG+GGG + chr3_3:51239529-51239548 Msa0456940:three_prime_UTR 25.0%
! GGTTTGATAATTCATCCATT+GGG + chr3_3:51238116-51238135 Msa0456940:five_prime_UTR 30.0%
AATTGATTGATTGTCTTGGT+TGG + chr3_3:51238342-51238361 Msa0456940:intron 30.0%
ATTGATTGATTGTCTTGGTT+GGG + chr3_3:51238343-51238362 Msa0456940:intron 30.0%
! TTAGTATTGGAAATCCAGTT+GGG + chr3_3:51238572-51238591 Msa0456940:CDS 30.0%
CTTATCTATCTATCTATCTC+AGG + chr3_3:51238816-51238835 Msa0456940:intron 30.0%
TAAAATAAACACAGTGAAGG+GGG - chr3_3:51238962-51238981 None:intergenic 30.0%
ACTTAATTGTCTCATGACAT+TGG + chr3_3:51239220-51239239 Msa0456940:intron 30.0%
AACAAAACATGTCAAGCAAT+TGG - chr3_3:51239390-51239409 None:intergenic 30.0%
!!! TGACATGTTTTGTTTTCTCA+TGG + chr3_3:51239396-51239415 Msa0456940:exon 30.0%
TTTCTAACATCAATGTCTCT+TGG - chr3_3:51239586-51239605 None:intergenic 30.0%
TATACATTGTGTTGAAAGAC+TGG + chr3_3:51239710-51239729 Msa0456940:three_prime_UTR 30.0%
! GGTTTGATAATTCATCCATT+GGG + chr3_3:51238116-51238135 Msa0456940:five_prime_UTR 30.0%
AATTGATTGATTGTCTTGGT+TGG + chr3_3:51238342-51238361 Msa0456940:intron 30.0%
ATTGATTGATTGTCTTGGTT+GGG + chr3_3:51238343-51238362 Msa0456940:intron 30.0%
! TTAGTATTGGAAATCCAGTT+GGG + chr3_3:51238572-51238591 Msa0456940:CDS 30.0%
CTTATCTATCTATCTATCTC+AGG + chr3_3:51238816-51238835 Msa0456940:intron 30.0%
TAAAATAAACACAGTGAAGG+GGG - chr3_3:51238962-51238981 None:intergenic 30.0%
ACTTAATTGTCTCATGACAT+TGG + chr3_3:51239220-51239239 Msa0456940:intron 30.0%
AACAAAACATGTCAAGCAAT+TGG - chr3_3:51239390-51239409 None:intergenic 30.0%
!!! TGACATGTTTTGTTTTCTCA+TGG + chr3_3:51239396-51239415 Msa0456940:exon 30.0%
TTTCTAACATCAATGTCTCT+TGG - chr3_3:51239586-51239605 None:intergenic 30.0%
TATACATTGTGTTGAAAGAC+TGG + chr3_3:51239710-51239729 Msa0456940:three_prime_UTR 30.0%
! GTGGATTGAGTAGTGTTATA+AGG + chr3_3:51238077-51238096 Msa0456940:five_prime_UTR 35.0%
! GGGTTTGATAATTCATCCAT+TGG + chr3_3:51238115-51238134 Msa0456940:five_prime_UTR 35.0%
TCTATTCAACTCAAACCCAA+TGG - chr3_3:51238134-51238153 None:intergenic 35.0%
ATTACCAGTGAGTAAATTGG+CGG - chr3_3:51238271-51238290 None:intergenic 35.0%
!!! CTTCTTTTAGGGTTAGGATT+AGG - chr3_3:51238397-51238416 None:intergenic 35.0%
! GTTAGTATTGGAAATCCAGT+TGG + chr3_3:51238571-51238590 Msa0456940:CDS 35.0%
ATCAAGGACTTCATGATTCA+AGG + chr3_3:51238721-51238740 Msa0456940:CDS 35.0%
! TATGAAAAACTGACTCCCAT+TGG - chr3_3:51239121-51239140 None:intergenic 35.0%
! GTTTTTCATATGCACTGTCA+AGG + chr3_3:51239131-51239150 Msa0456940:CDS 35.0%
! TGTTGTATTTGGCCAAGTTT+TGG + chr3_3:51239269-51239288 Msa0456940:CDS 35.0%
!! TGTTAGGTTGATTGAATCAC+AGG + chr3_3:51239305-51239324 Msa0456940:CDS 35.0%
ACTGATTGTCACCTTCTTTA+GGG - chr3_3:51239352-51239371 None:intergenic 35.0%
TTGTGTTGAAAGACTGGTAA+AGG + chr3_3:51239716-51239735 Msa0456940:three_prime_UTR 35.0%
TGTGTTGAAAGACTGGTAAA+GGG + chr3_3:51239717-51239736 Msa0456940:three_prime_UTR 35.0%
! GTGGATTGAGTAGTGTTATA+AGG + chr3_3:51238077-51238096 Msa0456940:five_prime_UTR 35.0%
! GGGTTTGATAATTCATCCAT+TGG + chr3_3:51238115-51238134 Msa0456940:five_prime_UTR 35.0%
TCTATTCAACTCAAACCCAA+TGG - chr3_3:51238134-51238153 None:intergenic 35.0%
ATTACCAGTGAGTAAATTGG+CGG - chr3_3:51238271-51238290 None:intergenic 35.0%
!!! CTTCTTTTAGGGTTAGGATT+AGG - chr3_3:51238397-51238416 None:intergenic 35.0%
! GTTAGTATTGGAAATCCAGT+TGG + chr3_3:51238571-51238590 Msa0456940:CDS 35.0%
ATCAAGGACTTCATGATTCA+AGG + chr3_3:51238721-51238740 Msa0456940:CDS 35.0%
! TATGAAAAACTGACTCCCAT+TGG - chr3_3:51239121-51239140 None:intergenic 35.0%
! GTTTTTCATATGCACTGTCA+AGG + chr3_3:51239131-51239150 Msa0456940:CDS 35.0%
! TGTTGTATTTGGCCAAGTTT+TGG + chr3_3:51239269-51239288 Msa0456940:CDS 35.0%
!! TGTTAGGTTGATTGAATCAC+AGG + chr3_3:51239305-51239324 Msa0456940:CDS 35.0%
ACTGATTGTCACCTTCTTTA+GGG - chr3_3:51239352-51239371 None:intergenic 35.0%
TTGTGTTGAAAGACTGGTAA+AGG + chr3_3:51239716-51239735 Msa0456940:three_prime_UTR 35.0%
TGTGTTGAAAGACTGGTAAA+GGG + chr3_3:51239717-51239736 Msa0456940:three_prime_UTR 35.0%
ATCCTTCCTTCCTTCTTCTT+CGG + chr3_3:51238198-51238217 Msa0456940:five_prime_UTR 40.0%
TAAACACCGAAGAAGAAGGA+AGG - chr3_3:51238207-51238226 None:intergenic 40.0%
TGGTTAAACACCGAAGAAGA+AGG - chr3_3:51238211-51238230 None:intergenic 40.0%
!!! GAGATGCTTCTTTTAGGGTT+AGG - chr3_3:51238403-51238422 None:intergenic 40.0%
GGAAAATGGTAGTAGTTCAG+AGG + chr3_3:51238501-51238520 Msa0456940:CDS 40.0%
AGGATTGTGATAGGACTCTT+TGG + chr3_3:51238607-51238626 Msa0456940:CDS 40.0%
AAGGACTTCATGATTCAAGG+AGG + chr3_3:51238724-51238743 Msa0456940:CDS 40.0%
CAAGGAGGAGACTTTGATAA+AGG + chr3_3:51238739-51238758 Msa0456940:CDS 40.0%
ATCTATCTATCTCAGGGAAC+TGG + chr3_3:51238823-51238842 Msa0456940:intron 40.0%
!! ACTGGAGGCAAAAGTATCTA+TGG + chr3_3:51238841-51238860 Msa0456940:CDS 40.0%
ATATCTCCAGTGTCTCATAC+CGG + chr3_3:51239057-51239076 Msa0456940:intron 40.0%
! GATCAGAGGCATGTTGTATT+TGG + chr3_3:51239258-51239277 Msa0456940:CDS 40.0%
!!! GTATTTGGCCAAGTTTTGGA+AGG + chr3_3:51239273-51239292 Msa0456940:CDS 40.0%
CTGATTGTCACCTTCTTTAG+GGG - chr3_3:51239351-51239370 None:intergenic 40.0%
! CACTGATTGTCACCTTCTTT+AGG - chr3_3:51239353-51239372 None:intergenic 40.0%
! TTCTTTGTTTCTTGCTGCTG+AGG + chr3_3:51239422-51239441 Msa0456940:three_prime_UTR 40.0%
!! TGTTTTGTATGGATGGGTTC+TGG + chr3_3:51239476-51239495 Msa0456940:three_prime_UTR 40.0%
TTGCTTAATCAGCAGTTGAG+TGG + chr3_3:51239627-51239646 Msa0456940:three_prime_UTR 40.0%
TGCTTAATCAGCAGTTGAGT+GGG + chr3_3:51239628-51239647 Msa0456940:three_prime_UTR 40.0%
GTGTTGAAAGACTGGTAAAG+GGG + chr3_3:51239718-51239737 Msa0456940:three_prime_UTR 40.0%
ATCCTTCCTTCCTTCTTCTT+CGG + chr3_3:51238198-51238217 Msa0456940:five_prime_UTR 40.0%
TAAACACCGAAGAAGAAGGA+AGG - chr3_3:51238207-51238226 None:intergenic 40.0%
TGGTTAAACACCGAAGAAGA+AGG - chr3_3:51238211-51238230 None:intergenic 40.0%
!!! GAGATGCTTCTTTTAGGGTT+AGG - chr3_3:51238403-51238422 None:intergenic 40.0%
GGAAAATGGTAGTAGTTCAG+AGG + chr3_3:51238501-51238520 Msa0456940:CDS 40.0%
AGGATTGTGATAGGACTCTT+TGG + chr3_3:51238607-51238626 Msa0456940:CDS 40.0%
AAGGACTTCATGATTCAAGG+AGG + chr3_3:51238724-51238743 Msa0456940:CDS 40.0%
CAAGGAGGAGACTTTGATAA+AGG + chr3_3:51238739-51238758 Msa0456940:CDS 40.0%
ATCTATCTATCTCAGGGAAC+TGG + chr3_3:51238823-51238842 Msa0456940:intron 40.0%
!! ACTGGAGGCAAAAGTATCTA+TGG + chr3_3:51238841-51238860 Msa0456940:CDS 40.0%
ATATCTCCAGTGTCTCATAC+CGG + chr3_3:51239057-51239076 Msa0456940:intron 40.0%
! GATCAGAGGCATGTTGTATT+TGG + chr3_3:51239258-51239277 Msa0456940:CDS 40.0%
!!! GTATTTGGCCAAGTTTTGGA+AGG + chr3_3:51239273-51239292 Msa0456940:CDS 40.0%
CTGATTGTCACCTTCTTTAG+GGG - chr3_3:51239351-51239370 None:intergenic 40.0%
! CACTGATTGTCACCTTCTTT+AGG - chr3_3:51239353-51239372 None:intergenic 40.0%
! TTCTTTGTTTCTTGCTGCTG+AGG + chr3_3:51239422-51239441 Msa0456940:three_prime_UTR 40.0%
!! TGTTTTGTATGGATGGGTTC+TGG + chr3_3:51239476-51239495 Msa0456940:three_prime_UTR 40.0%
TTGCTTAATCAGCAGTTGAG+TGG + chr3_3:51239627-51239646 Msa0456940:three_prime_UTR 40.0%
TGCTTAATCAGCAGTTGAGT+GGG + chr3_3:51239628-51239647 Msa0456940:three_prime_UTR 40.0%
GTGTTGAAAGACTGGTAAAG+GGG + chr3_3:51239718-51239737 Msa0456940:three_prime_UTR 40.0%
!! TTCGGTGTTTAACCAACCGA+TGG + chr3_3:51238216-51238235 Msa0456940:exon 45.0%
AACACCGCCAATTTACTCAC+TGG + chr3_3:51238264-51238283 Msa0456940:CDS 45.0%
GATTGATTGTCTTGGTTGGG+TGG + chr3_3:51238346-51238365 Msa0456940:intron 45.0%
! CGACGGAGATGCTTCTTTTA+GGG - chr3_3:51238408-51238427 None:intergenic 45.0%
!! CCTAAAAGAAGCATCTCCGT+CGG + chr3_3:51238406-51238425 Msa0456940:CDS 45.0%
!! CTAAAAGAAGCATCTCCGTC+GGG + chr3_3:51238407-51238426 Msa0456940:CDS 45.0%
!! TAAAAGAAGCATCTCCGTCG+GGG + chr3_3:51238408-51238427 Msa0456940:CDS 45.0%
TACGACGACAAGTGAAAGTG+AGG + chr3_3:51238473-51238492 Msa0456940:CDS 45.0%
ACGACGACAAGTGAAAGTGA+GGG + chr3_3:51238474-51238493 Msa0456940:CDS 45.0%
AAAGTGAGGGCAGTGGAAAA+TGG + chr3_3:51238487-51238506 Msa0456940:CDS 45.0%
CTGGTTGGAAGGATTGTGAT+AGG + chr3_3:51238598-51238617 Msa0456940:CDS 45.0%
GGAAGTTCTCAACAGTTTGC+GGG - chr3_3:51238642-51238661 None:intergenic 45.0%
CGGAAGTTCTCAACAGTTTG+CGG - chr3_3:51238643-51238662 None:intergenic 45.0%
TATCTATCTCAGGGAACTGG+AGG + chr3_3:51238826-51238845 Msa0456940:intron 45.0%
! AACTGACTCCCATTGGTGTT+GGG - chr3_3:51239114-51239133 None:intergenic 45.0%
! AAACTGACTCCCATTGGTGT+TGG - chr3_3:51239115-51239134 None:intergenic 45.0%
TGTCCATGCCTTCCAAAACT+TGG - chr3_3:51239284-51239303 None:intergenic 45.0%
! TGGAAGGCATGGACATTGTT+AGG + chr3_3:51239289-51239308 Msa0456940:CDS 45.0%
AAGGTGACAATCAGTGACTG+TGG + chr3_3:51239357-51239376 Msa0456940:CDS 45.0%
GCTTAATCAGCAGTTGAGTG+GGG + chr3_3:51239629-51239648 Msa0456940:three_prime_UTR 45.0%
AAGGGGTGAGCAATTGTTCT+AGG + chr3_3:51239735-51239754 Msa0456940:three_prime_UTR 45.0%
AGGGGTGAGCAATTGTTCTA+GGG + chr3_3:51239736-51239755 Msa0456940:three_prime_UTR 45.0%
!! TGAGCAATTGTTCTAGGGTG+TGG + chr3_3:51239741-51239760 Msa0456940:three_prime_UTR 45.0%
!! TTGTTCTAGGGTGTGGAGAA+AGG + chr3_3:51239748-51239767 Msa0456940:three_prime_UTR 45.0%
!! TGTTCTAGGGTGTGGAGAAA+GGG + chr3_3:51239749-51239768 Msa0456940:three_prime_UTR 45.0%
GTGTGGAGAAAGGGAGTTAA+TGG + chr3_3:51239758-51239777 Msa0456940:three_prime_UTR 45.0%
GAGAAAGGGAGTTAATGGTG+AGG + chr3_3:51239763-51239782 Msa0456940:three_prime_UTR 45.0%
!! TTCGGTGTTTAACCAACCGA+TGG + chr3_3:51238216-51238235 Msa0456940:exon 45.0%
AACACCGCCAATTTACTCAC+TGG + chr3_3:51238264-51238283 Msa0456940:CDS 45.0%
GATTGATTGTCTTGGTTGGG+TGG + chr3_3:51238346-51238365 Msa0456940:intron 45.0%
! CGACGGAGATGCTTCTTTTA+GGG - chr3_3:51238408-51238427 None:intergenic 45.0%
!! CCTAAAAGAAGCATCTCCGT+CGG + chr3_3:51238406-51238425 Msa0456940:CDS 45.0%
!! CTAAAAGAAGCATCTCCGTC+GGG + chr3_3:51238407-51238426 Msa0456940:CDS 45.0%
!! TAAAAGAAGCATCTCCGTCG+GGG + chr3_3:51238408-51238427 Msa0456940:CDS 45.0%
TACGACGACAAGTGAAAGTG+AGG + chr3_3:51238473-51238492 Msa0456940:CDS 45.0%
ACGACGACAAGTGAAAGTGA+GGG + chr3_3:51238474-51238493 Msa0456940:CDS 45.0%
AAAGTGAGGGCAGTGGAAAA+TGG + chr3_3:51238487-51238506 Msa0456940:CDS 45.0%
CTGGTTGGAAGGATTGTGAT+AGG + chr3_3:51238598-51238617 Msa0456940:CDS 45.0%
GGAAGTTCTCAACAGTTTGC+GGG - chr3_3:51238642-51238661 None:intergenic 45.0%
CGGAAGTTCTCAACAGTTTG+CGG - chr3_3:51238643-51238662 None:intergenic 45.0%
TATCTATCTCAGGGAACTGG+AGG + chr3_3:51238826-51238845 Msa0456940:intron 45.0%
! AACTGACTCCCATTGGTGTT+GGG - chr3_3:51239114-51239133 None:intergenic 45.0%
! AAACTGACTCCCATTGGTGT+TGG - chr3_3:51239115-51239134 None:intergenic 45.0%
TGTCCATGCCTTCCAAAACT+TGG - chr3_3:51239284-51239303 None:intergenic 45.0%
! TGGAAGGCATGGACATTGTT+AGG + chr3_3:51239289-51239308 Msa0456940:CDS 45.0%
AAGGTGACAATCAGTGACTG+TGG + chr3_3:51239357-51239376 Msa0456940:CDS 45.0%
GCTTAATCAGCAGTTGAGTG+GGG + chr3_3:51239629-51239648 Msa0456940:three_prime_UTR 45.0%
AAGGGGTGAGCAATTGTTCT+AGG + chr3_3:51239735-51239754 Msa0456940:three_prime_UTR 45.0%
AGGGGTGAGCAATTGTTCTA+GGG + chr3_3:51239736-51239755 Msa0456940:three_prime_UTR 45.0%
!! TGAGCAATTGTTCTAGGGTG+TGG + chr3_3:51239741-51239760 Msa0456940:three_prime_UTR 45.0%
!! TTGTTCTAGGGTGTGGAGAA+AGG + chr3_3:51239748-51239767 Msa0456940:three_prime_UTR 45.0%
!! TGTTCTAGGGTGTGGAGAAA+GGG + chr3_3:51239749-51239768 Msa0456940:three_prime_UTR 45.0%
GTGTGGAGAAAGGGAGTTAA+TGG + chr3_3:51239758-51239777 Msa0456940:three_prime_UTR 45.0%
GAGAAAGGGAGTTAATGGTG+AGG + chr3_3:51239763-51239782 Msa0456940:three_prime_UTR 45.0%
CGCGTGCGTTAAAATTGAGG+AGG - chr3_3:51238174-51238193 None:intergenic 50.0%
TCGCGCGTGCGTTAAAATTG+AGG - chr3_3:51238177-51238196 None:intergenic 50.0%
CACCGAAGAAGAAGGAAGGA+AGG - chr3_3:51238203-51238222 None:intergenic 50.0%
TTGAATGCAGCAGCAGCCAT+CGG - chr3_3:51238235-51238254 None:intergenic 50.0%
! CCGACGGAGATGCTTCTTTT+AGG - chr3_3:51238409-51238428 None:intergenic 50.0%
TAGTTTCACACCCACACCTC+GGG - chr3_3:51238443-51238462 None:intergenic 50.0%
CTAGTTTCACACCCACACCT+CGG - chr3_3:51238444-51238463 None:intergenic 50.0%
GTGGGTGTGAAACTAGCAGT+AGG + chr3_3:51238448-51238467 Msa0456940:CDS 50.0%
ACAAGTGAAAGTGAGGGCAG+TGG + chr3_3:51238480-51238499 Msa0456940:CDS 50.0%
TGGAAATCCAGTTGGGAAGC+TGG + chr3_3:51238579-51238598 Msa0456940:CDS 50.0%
AATCCAGTTGGGAAGCTGGT+TGG + chr3_3:51238583-51238602 Msa0456940:CDS 50.0%
!! TGAAGTCCTTGATGACGCGA+TGG - chr3_3:51238714-51238733 None:intergenic 50.0%
TTTGCCATGCTAACAGCTCC+TGG - chr3_3:51239084-51239103 None:intergenic 50.0%
GCTGTTAGCATGGCAAATGC+TGG + chr3_3:51239087-51239106 Msa0456940:CDS 50.0%
AATGCTGGTCCCAACACCAA+TGG + chr3_3:51239102-51239121 Msa0456940:CDS 50.0%
ATGCTGGTCCCAACACCAAT+GGG + chr3_3:51239103-51239122 Msa0456940:CDS 50.0%
!!! TGGCCAAGTTTTGGAAGGCA+TGG + chr3_3:51239278-51239297 Msa0456940:CDS 50.0%
GAATCACAGGAGACTGATCG+TGG + chr3_3:51239318-51239337 Msa0456940:CDS 50.0%
TGGTGATCGTCCCCTAAAGA+AGG + chr3_3:51239338-51239357 Msa0456940:CDS 50.0%
AATGGTGAGGTGTGCACAGT+TGG + chr3_3:51239776-51239795 Msa0456940:three_prime_UTR 50.0%
CGCGTGCGTTAAAATTGAGG+AGG - chr3_3:51238174-51238193 None:intergenic 50.0%
TCGCGCGTGCGTTAAAATTG+AGG - chr3_3:51238177-51238196 None:intergenic 50.0%
CACCGAAGAAGAAGGAAGGA+AGG - chr3_3:51238203-51238222 None:intergenic 50.0%
TTGAATGCAGCAGCAGCCAT+CGG - chr3_3:51238235-51238254 None:intergenic 50.0%
! CCGACGGAGATGCTTCTTTT+AGG - chr3_3:51238409-51238428 None:intergenic 50.0%
TAGTTTCACACCCACACCTC+GGG - chr3_3:51238443-51238462 None:intergenic 50.0%
CTAGTTTCACACCCACACCT+CGG - chr3_3:51238444-51238463 None:intergenic 50.0%
GTGGGTGTGAAACTAGCAGT+AGG + chr3_3:51238448-51238467 Msa0456940:CDS 50.0%
ACAAGTGAAAGTGAGGGCAG+TGG + chr3_3:51238480-51238499 Msa0456940:CDS 50.0%
TGGAAATCCAGTTGGGAAGC+TGG + chr3_3:51238579-51238598 Msa0456940:CDS 50.0%
AATCCAGTTGGGAAGCTGGT+TGG + chr3_3:51238583-51238602 Msa0456940:CDS 50.0%
!! TGAAGTCCTTGATGACGCGA+TGG - chr3_3:51238714-51238733 None:intergenic 50.0%
TTTGCCATGCTAACAGCTCC+TGG - chr3_3:51239084-51239103 None:intergenic 50.0%
GCTGTTAGCATGGCAAATGC+TGG + chr3_3:51239087-51239106 Msa0456940:CDS 50.0%
AATGCTGGTCCCAACACCAA+TGG + chr3_3:51239102-51239121 Msa0456940:CDS 50.0%
ATGCTGGTCCCAACACCAAT+GGG + chr3_3:51239103-51239122 Msa0456940:CDS 50.0%
!!! TGGCCAAGTTTTGGAAGGCA+TGG + chr3_3:51239278-51239297 Msa0456940:CDS 50.0%
GAATCACAGGAGACTGATCG+TGG + chr3_3:51239318-51239337 Msa0456940:CDS 50.0%
TGGTGATCGTCCCCTAAAGA+AGG + chr3_3:51239338-51239357 Msa0456940:CDS 50.0%
AATGGTGAGGTGTGCACAGT+TGG + chr3_3:51239776-51239795 Msa0456940:three_prime_UTR 50.0%
CTTCCAACCAGCTTCCCAAC+TGG - chr3_3:51238589-51238608 None:intergenic 55.0%
CAGTTGGGAAGCTGGTTGGA+AGG + chr3_3:51238587-51238606 Msa0456940:CDS 55.0%
AACTTCCGTGCCCTTTCCAC+CGG + chr3_3:51238655-51238674 Msa0456940:CDS 55.0%
GTAGCCAAAGCCCTTCTCAC+CGG - chr3_3:51238677-51238696 None:intergenic 55.0%
!! CTTGATGACGCGATGGAAGG+TGG - chr3_3:51238707-51238726 None:intergenic 55.0%
CACCTTCCATCGCGTCATCA+AGG + chr3_3:51238705-51238724 Msa0456940:CDS 55.0%
!! GTCCTTGATGACGCGATGGA+AGG - chr3_3:51238710-51238729 None:intergenic 55.0%
CATGCTAACAGCTCCTGGTC+CGG - chr3_3:51239079-51239098 None:intergenic 55.0%
ACATGCCTCTGATCCAGCCA+CGG - chr3_3:51239252-51239271 None:intergenic 55.0%
CTTCCAACCAGCTTCCCAAC+TGG - chr3_3:51238589-51238608 None:intergenic 55.0%
CAGTTGGGAAGCTGGTTGGA+AGG + chr3_3:51238587-51238606 Msa0456940:CDS 55.0%
AACTTCCGTGCCCTTTCCAC+CGG + chr3_3:51238655-51238674 Msa0456940:CDS 55.0%
GTAGCCAAAGCCCTTCTCAC+CGG - chr3_3:51238677-51238696 None:intergenic 55.0%
!! CTTGATGACGCGATGGAAGG+TGG - chr3_3:51238707-51238726 None:intergenic 55.0%
CACCTTCCATCGCGTCATCA+AGG + chr3_3:51238705-51238724 Msa0456940:CDS 55.0%
!! GTCCTTGATGACGCGATGGA+AGG - chr3_3:51238710-51238729 None:intergenic 55.0%
CATGCTAACAGCTCCTGGTC+CGG - chr3_3:51239079-51239098 None:intergenic 55.0%
ACATGCCTCTGATCCAGCCA+CGG - chr3_3:51239252-51239271 None:intergenic 55.0%
ATGCAGCAGCAGCCATCGGT+TGG - chr3_3:51238231-51238250 None:intergenic 60.0%
!! AAGAAGCATCTCCGTCGGGG+TGG + chr3_3:51238411-51238430 Msa0456940:CDS 60.0%
GTGGTTAGGTCCCGAGGTGT+GGG + chr3_3:51238430-51238449 Msa0456940:CDS 60.0%
TCTCACCGGTGGAAAGGGCA+CGG - chr3_3:51238663-51238682 None:intergenic 60.0%
TGCCCTTTCCACCGGTGAGA+AGG + chr3_3:51238663-51238682 Msa0456940:CDS 60.0%
GCCCTTTCCACCGGTGAGAA+GGG + chr3_3:51238664-51238683 Msa0456940:CDS 60.0%
GCCCTTCTCACCGGTGGAAA+GGG - chr3_3:51238668-51238687 None:intergenic 60.0%
AGCCCTTCTCACCGGTGGAA+AGG - chr3_3:51238669-51238688 None:intergenic 60.0%
TCCACCGGTGAGAAGGGCTT+TGG + chr3_3:51238670-51238689 Msa0456940:CDS 60.0%
GATGACGCGATGGAAGGTGG+AGG - chr3_3:51238704-51238723 None:intergenic 60.0%
CCTGGTCCGGTATGAGACAC+TGG - chr3_3:51239066-51239085 None:intergenic 60.0%
CCAGTGTCTCATACCGGACC+AGG + chr3_3:51239063-51239082 Msa0456940:intron 60.0%
CGGACCAGGAGCTGTTAGCA+TGG + chr3_3:51239077-51239096 Msa0456940:CDS 60.0%
CATGACATTGGCAGACGCCG+TGG + chr3_3:51239232-51239251 Msa0456940:intron 60.0%
ATGCAGCAGCAGCCATCGGT+TGG - chr3_3:51238231-51238250 None:intergenic 60.0%
!! AAGAAGCATCTCCGTCGGGG+TGG + chr3_3:51238411-51238430 Msa0456940:CDS 60.0%
GTGGTTAGGTCCCGAGGTGT+GGG + chr3_3:51238430-51238449 Msa0456940:CDS 60.0%
TCTCACCGGTGGAAAGGGCA+CGG - chr3_3:51238663-51238682 None:intergenic 60.0%
TGCCCTTTCCACCGGTGAGA+AGG + chr3_3:51238663-51238682 Msa0456940:CDS 60.0%
GCCCTTTCCACCGGTGAGAA+GGG + chr3_3:51238664-51238683 Msa0456940:CDS 60.0%
GCCCTTCTCACCGGTGGAAA+GGG - chr3_3:51238668-51238687 None:intergenic 60.0%
AGCCCTTCTCACCGGTGGAA+AGG - chr3_3:51238669-51238688 None:intergenic 60.0%
TCCACCGGTGAGAAGGGCTT+TGG + chr3_3:51238670-51238689 Msa0456940:CDS 60.0%
GATGACGCGATGGAAGGTGG+AGG - chr3_3:51238704-51238723 None:intergenic 60.0%
CCTGGTCCGGTATGAGACAC+TGG - chr3_3:51239066-51239085 None:intergenic 60.0%
CCAGTGTCTCATACCGGACC+AGG + chr3_3:51239063-51239082 Msa0456940:intron 60.0%
CGGACCAGGAGCTGTTAGCA+TGG + chr3_3:51239077-51239096 Msa0456940:CDS 60.0%
CATGACATTGGCAGACGCCG+TGG + chr3_3:51239232-51239251 Msa0456940:intron 60.0%
GCATCTCCGTCGGGGTGGTT+AGG + chr3_3:51238416-51238435 Msa0456940:CDS 65.0%
TCGGGACCTAACCACCCCGA+CGG - chr3_3:51238425-51238444 None:intergenic 65.0%
GGTGGTTAGGTCCCGAGGTG+TGG + chr3_3:51238429-51238448 Msa0456940:CDS 65.0%
GCCAAAGCCCTTCTCACCGG+TGG - chr3_3:51238674-51238693 None:intergenic 65.0%
ACATTGGCAGACGCCGTGGC+TGG + chr3_3:51239236-51239255 Msa0456940:intron 65.0%
AGACGCCGTGGCTGGATCAG+AGG + chr3_3:51239244-51239263 Msa0456940:intron 65.0%
GCATCTCCGTCGGGGTGGTT+AGG + chr3_3:51238416-51238435 Msa0456940:CDS 65.0%
TCGGGACCTAACCACCCCGA+CGG - chr3_3:51238425-51238444 None:intergenic 65.0%
GGTGGTTAGGTCCCGAGGTG+TGG + chr3_3:51238429-51238448 Msa0456940:CDS 65.0%
GCCAAAGCCCTTCTCACCGG+TGG - chr3_3:51238674-51238693 None:intergenic 65.0%
ACATTGGCAGACGCCGTGGC+TGG + chr3_3:51239236-51239255 Msa0456940:intron 65.0%
AGACGCCGTGGCTGGATCAG+AGG + chr3_3:51239244-51239263 Msa0456940:intron 65.0%
GTCGGGGTGGTTAGGTCCCG+AGG + chr3_3:51238424-51238443 Msa0456940:CDS 70.0%
GTCGGGGTGGTTAGGTCCCG+AGG + chr3_3:51238424-51238443 Msa0456940:CDS 70.0%
Chromosome Type Strat End Strand Name
chr3_3 gene 51238031 51239804 51238031 ID=Msa0456940;Name=Msa0456940
chr3_3 mRNA 51238031 51239804 51238031 ID=Msa0456940-mRNA-1;Parent=Msa0456940;Name=Msa0456940-mRNA-1;_AED=0.16;_eAED=0.16;_QI=204|1|1|1|1|1|5|406|245
chr3_3 exon 51238031 51238285 51238031 ID=Msa0456940-mRNA-1:exon:9811;Parent=Msa0456940-mRNA-1
chr3_3 exon 51238373 51238765 51238373 ID=Msa0456940-mRNA-1:exon:9812;Parent=Msa0456940-mRNA-1
chr3_3 exon 51238838 51238892 51238838 ID=Msa0456940-mRNA-1:exon:9813;Parent=Msa0456940-mRNA-1
chr3_3 exon 51239067 51239152 51239067 ID=Msa0456940-mRNA-1:exon:9814;Parent=Msa0456940-mRNA-1
chr3_3 exon 51239246 51239804 51239246 ID=Msa0456940-mRNA-1:exon:9815;Parent=Msa0456940-mRNA-1
chr3_3 five_prime_UTR 51238031 51238234 51238031 ID=Msa0456940-mRNA-1:five_prime_utr;Parent=Msa0456940-mRNA-1
chr3_3 CDS 51238235 51238285 51238235 ID=Msa0456940-mRNA-1:cds;Parent=Msa0456940-mRNA-1
chr3_3 CDS 51238373 51238765 51238373 ID=Msa0456940-mRNA-1:cds;Parent=Msa0456940-mRNA-1
chr3_3 CDS 51238838 51238892 51238838 ID=Msa0456940-mRNA-1:cds;Parent=Msa0456940-mRNA-1
chr3_3 CDS 51239067 51239152 51239067 ID=Msa0456940-mRNA-1:cds;Parent=Msa0456940-mRNA-1
chr3_3 CDS 51239246 51239398 51239246 ID=Msa0456940-mRNA-1:cds;Parent=Msa0456940-mRNA-1
chr3_3 three_prime_UTR 51239399 51239804 51239399 ID=Msa0456940-mRNA-1:three_prime_utr;Parent=Msa0456940-mRNA-1
Gene Sequence

>Msa0456940

ATGGCTGCTGCTGCATTCAATGTTACTACAACACCGCCAATTTACTCACTGTCAAATGTTGTTGCTCTGAATCCTAATCCTAACCCTAAAAGAAGCATCTCCGTCGGGGTGGTTAGGTCCCGAGGTGTGGGTGTGAAACTAGCAGTAGGAGTACGACGACAAGTGAAAGTGAGGGCAGTGGAAAATGGTAGTAGTTCAGAGGAGAAAGTAATAGTACAGTCAAAAGTGACTCACAAAGTATTCTTTGATGTTAGTATTGGAAATCCAGTTGGGAAGCTGGTTGGAAGGATTGTGATAGGACTCTTTGGTGATGATGTCCCGCAAACTGTTGAGAACTTCCGTGCCCTTTCCACCGGTGAGAAGGGCTTTGGCTACAAGTCCTCCACCTTCCATCGCGTCATCAAGGACTTCATGATTCAAGGAGGAGACTTTGATAAAGGAAATGGAACTGGAGGCAAAAGTATCTATGGTCGTACTTTCAAAGATGAGAATTTTAATCTGTCTCATACCGGACCAGGAGCTGTTAGCATGGCAAATGCTGGTCCCAACACCAATGGGAGTCAGTTTTTCATATGCACTGTCAAGACGCCGTGGCTGGATCAGAGGCATGTTGTATTTGGCCAAGTTTTGGAAGGCATGGACATTGTTAGGTTGATTGAATCACAGGAGACTGATCGTGGTGATCGTCCCCTAAAGAAGGTGACAATCAGTGACTGTGGCGAGCTTCCAATTGCTTGA

Protein sequence

>Msa0456940

MAAAAFNVTTTPPIYSLSNVVALNPNPNPKRSISVGVVRSRGVGVKLAVGVRRQVKVRAVENGSSSEEKVIVQSKVTHKVFFDVSIGNPVGKLVGRIVIGLFGDDVPQTVENFRALSTGEKGFGYKSSTFHRVIKDFMIQGGDFDKGNGTGGKSIYGRTFKDENFNLSHTGPGAVSMANAGPNTNGSQFFICTVKTPWLDQRHVVFGQVLEGMDIVRLIESQETDRGDRPLKKVTISDCGELPIA*