AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0387120


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0387120 MtrunA17_Chr3g0140041 93.976 498 11 2 1 498 1 479 0.0 951
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0387120 AT4G32770.1 65.873 504 150 4 1 498 1 488 0.0 687

Find 162 sgRNAs with CRISPR-Local

Find 313 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTCCCCAATCACACAATTTC+TGG 0.153393 3_1:-90965436 Msa0387120:CDS
GGGAGGTGTAGGAGAGTAAA+TGG 0.240767 3_1:+90965781 None:intergenic
CGTTCCCGAGAAAATGGTTT+TGG 0.250397 3_1:-90963386 Msa0387120:CDS
TTTATTCGAAATCAATCAAT+AGG 0.272856 3_1:-90966206 Msa0387120:five_prime_UTR
ACTTTGGAATTGGCACAATA+TGG 0.276822 3_1:-90965524 Msa0387120:CDS
AAGTAGCTACTTGGGGTTAT+TGG 0.292450 3_1:-90962281 Msa0387120:CDS
GACCTAGGTTTACTGGTGTT+GGG 0.295673 3_1:-90965502 Msa0387120:CDS
CCTGTTCTTAGCCGTGCTAT+TGG 0.308781 3_1:-90961636 Msa0387120:CDS
GTGGAGCGTTCCCGAGAAAA+TGG 0.320779 3_1:-90963392 Msa0387120:CDS
CAATATGGACCTAGGTTTAC+TGG 0.328735 3_1:-90965509 Msa0387120:CDS
TCATGGTAAGTACAAACTTT+TGG 0.336719 3_1:-90961499 Msa0387120:three_prime_UTR
GTGAAAATGGCAGATAATAT+TGG 0.340328 3_1:-90961739 Msa0387120:intron
TTAATGTATAAGAATGTTCA+TGG 0.341375 3_1:-90961393 Msa0387120:three_prime_UTR
GTGTTTAGGTATCACTTTGA+TGG 0.344307 3_1:-90965662 Msa0387120:intron
TTCCAAAGTTGTCAATTCCT+TGG 0.350325 3_1:+90965538 None:intergenic
TTCCCCAGAAATTGTGTGAT+TGG 0.351635 3_1:+90965432 None:intergenic
GTCACTCCCCTTTGGAATCA+AGG 0.354231 3_1:-90964307 Msa0387120:CDS
CAAGGTTTCATTTGCGATGA+TGG 0.355793 3_1:-90964289 Msa0387120:CDS
GGAATTGACAACTTTGGAAT+TGG 0.357544 3_1:-90965534 Msa0387120:CDS
TGGTGGATTGAGACAAATTC+CGG 0.358362 3_1:-90962988 Msa0387120:CDS
TCCCCAGAAATTGTGTGATT+GGG 0.365123 3_1:+90965433 None:intergenic
TAGCCGTGCTATTGGATTAC+CGG 0.369394 3_1:-90961628 Msa0387120:CDS
GGTGTTGGGGCACAAATTCT+TGG 0.371589 3_1:-90965488 Msa0387120:CDS
CATCTTATTCAGAAAAGAAC+TGG 0.385152 3_1:-90963416 Msa0387120:CDS
TCCAAAGTTGTCAATTCCTT+GGG 0.386517 3_1:+90965539 None:intergenic
TCTCTTGGTACAGAGTTTCA+TGG 0.392959 3_1:-90961516 Msa0387120:three_prime_UTR
GGACCTAGGTTTACTGGTGT+TGG 0.399070 3_1:-90965503 Msa0387120:CDS
GCTTGTAAAGATACATGCTT+TGG 0.401985 3_1:-90961896 Msa0387120:CDS
TATAGTACACGTCCTGTATA+TGG 0.403430 3_1:-90964139 Msa0387120:CDS
TGTAGGAGAGTAAATGGGTT+TGG 0.412743 3_1:+90965787 None:intergenic
TACACGTCCTGTATATGGTT+GGG 0.419259 3_1:-90964134 Msa0387120:CDS
GAATACTAAAATTAAAATTG+TGG 0.423212 3_1:-90961874 Msa0387120:CDS
TATATGGTTGGGGTGATGTT+GGG 0.431491 3_1:-90964123 Msa0387120:CDS
TTATTCGAAATCAATCAATA+GGG 0.435300 3_1:-90966205 Msa0387120:five_prime_UTR
GTATATGGTTGGGGTGATGT+TGG 0.436667 3_1:-90964124 Msa0387120:CDS
ATTGTTAACGTGTGTTTAGT+TGG 0.440803 3_1:-90961369 Msa0387120:three_prime_UTR
AATACTAAAATTAAAATTGT+GGG 0.443751 3_1:-90961873 Msa0387120:CDS
TTAGGAGGAACCTCCTTGTT+CGG 0.446056 3_1:+90965239 None:intergenic
AGGTAGGAATGAATTGATGT+TGG 0.446287 3_1:-90965297 Msa0387120:CDS
TATCTTTACAAGCTTGAGAA+AGG 0.455604 3_1:+90961906 None:intergenic
TCCCAAGGAATTGACAACTT+TGG 0.457159 3_1:-90965540 Msa0387120:CDS
TCCCCAATCACACAATTTCT+GGG 0.459146 3_1:-90965435 Msa0387120:CDS
ATGGCCGGTGGCCTGTCAAC+AGG 0.465344 3_1:-90964031 Msa0387120:intron
GAAAGGCCAGCTTCTGATGT+TGG 0.465394 3_1:+90961923 None:intergenic
GCGCAGATTGGAATTCACTA+TGG 0.470754 3_1:-90962351 Msa0387120:intron
GGATTACCGGTAGATGTAGA+TGG 0.471198 3_1:-90961615 Msa0387120:CDS
GAAGAAGAAACAGAGGAGGA+AGG 0.472031 3_1:+90965914 None:intergenic
ATTCAATAGCTTGGTTTCCA+TGG 0.473175 3_1:+90965958 None:intergenic
AAAGAACGGTAGTGATGAAA+GGG 0.477792 3_1:+90965863 None:intergenic
ACATCACCCCAACCATATAC+AGG 0.478564 3_1:+90964127 None:intergenic
CCAATAGCACGGCTAAGAAC+AGG 0.479300 3_1:+90961636 None:intergenic
CATGGAATGGTGTTGTAAGC+TGG 0.479963 3_1:-90962305 Msa0387120:CDS
AAGAAAAGAACGTGTGATGT+TGG 0.482895 3_1:-90966076 Msa0387120:five_prime_UTR
TAAGCTGGGAAGTAGCTACT+TGG 0.490303 3_1:-90962290 Msa0387120:CDS
GGGGCACAAATTCTTGGTGC+TGG 0.494415 3_1:-90965482 Msa0387120:CDS
TTTCCTCTGTTTAAACCACC+TGG 0.496378 3_1:-90961579 Msa0387120:CDS
AAGCTGGGAAGTAGCTACTT+GGG 0.500867 3_1:-90962289 Msa0387120:CDS
AGATTGAGATTGTTGTTGTT+CGG 0.504947 3_1:+90965811 None:intergenic
GACATGGCAGCTCTAGAAGT+TGG 0.506366 3_1:-90961705 Msa0387120:CDS
GGTGGATTGAGACAAATTCC+GGG 0.506870 3_1:-90962987 Msa0387120:CDS
CACGCAAATTCTTCGAGGGT+TGG 0.507645 3_1:-90965634 Msa0387120:CDS
GACATTTGAAAATGCTGCAT+TGG 0.507859 3_1:-90962955 Msa0387120:intron
GGAGGTGTAGGAGAGTAAAT+GGG 0.508025 3_1:+90965782 None:intergenic
TCCATGTAAAACTTCTCTCT+TGG 0.509736 3_1:-90961531 Msa0387120:three_prime_UTR
GAGGGCCATGGTTTAACACT+TGG 0.509944 3_1:-90961680 Msa0387120:CDS
TAACGTGTGTTTAGTTGGAG+GGG 0.510042 3_1:-90961364 None:intergenic
AATGAAACCTTGATTCCAAA+GGG 0.511006 3_1:+90964300 None:intergenic
GGTAGGAATGAATTGATGTT+GGG 0.514349 3_1:-90965296 Msa0387120:CDS
TCAAATGTCTCAGTTAGTCC+CGG 0.515148 3_1:+90962969 None:intergenic
AGAAGGTGGATTCAATAGCT+TGG 0.516141 3_1:+90965949 None:intergenic
ACCTAGGTTTACTGGTGTTG+GGG 0.516777 3_1:-90965501 Msa0387120:CDS
AAGATAGTTACCCGCTATGA+GGG 0.516871 3_1:+90965741 None:intergenic
GGAAAGTGAATAAGAGAAGG+TGG 0.517764 3_1:+90965935 None:intergenic
AACTGCACGCAAATTCTTCG+AGG 0.519195 3_1:-90965639 Msa0387120:CDS
AACAGTAAAGACTGCTCGCT+GGG 0.520354 3_1:-90964164 Msa0387120:CDS
CACAGAAGTCAACTGCTGGC+TGG 0.521033 3_1:-90964096 Msa0387120:CDS
GGGGTGCGAAGTTGACGATT+GGG 0.522940 3_1:+90965761 None:intergenic
AAAGATAGTTACCCGCTATG+AGG 0.527165 3_1:+90965740 None:intergenic
TTAACGTGTGTTTAGTTGGA+GGG 0.528753 3_1:-90961365 Msa0387120:three_prime_UTR
GAACAAGGAGGTTCCTCCTA+AGG 0.529562 3_1:-90965237 Msa0387120:intron
AGGGGTGCGAAGTTGACGAT+TGG 0.530318 3_1:+90965760 None:intergenic
TACATAAAACCTACCTTAGG+AGG 0.531597 3_1:+90965224 None:intergenic
CGTGCTCCAACATCAGAAGC+TGG 0.533200 3_1:-90961929 Msa0387120:CDS
GAAATTGCACTTACAGCCGC+TGG 0.534354 3_1:-90963008 Msa0387120:CDS
TTTAATGATAAAGTGTTCGA+AGG 0.534535 3_1:-90964337 Msa0387120:CDS
TGTGTGATTGGGGAGTATAT+TGG 0.535186 3_1:+90965444 None:intergenic
ACAGAGGAAACAGATTATAG+AGG 0.536656 3_1:+90961592 None:intergenic
AACTTCGCACCCCTCATAGC+GGG 0.537198 3_1:-90965751 Msa0387120:intron
AAACAGTAAAGACTGCTCGC+TGG 0.537456 3_1:-90964165 Msa0387120:CDS
CGATGATTAGTTTGAAAGAA+CGG 0.544514 3_1:+90965849 None:intergenic
ACACGTCCTGTATATGGTTG+GGG 0.544633 3_1:-90964133 Msa0387120:CDS
TATGAATTTGTGCCATGGAA+TGG 0.547126 3_1:-90962318 Msa0387120:CDS
GAAAGAACGGTAGTGATGAA+AGG 0.547693 3_1:+90965862 None:intergenic
CAAGAATCATCATTCATCCA+TGG 0.547722 3_1:-90965975 Msa0387120:exon
GAAGGAAAGTGAATAAGAGA+AGG 0.549935 3_1:+90965932 None:intergenic
GACAGCACATACCTGTTGAC+AGG 0.550591 3_1:+90964020 None:intergenic
CATTGGCAAATATGCATGGC+CGG 0.551128 3_1:-90964046 Msa0387120:CDS
TAGAAGTTGGAGGAGGGCCA+TGG 0.552177 3_1:-90961692 Msa0387120:CDS
GAATCTCAGGTTGGATAGAG+TGG 0.554904 3_1:-90963470 Msa0387120:intron
AGTTGACGATTGGGAGGTGT+AGG 0.555006 3_1:+90965770 None:intergenic
GTTAACGTGTGTTTAGTTGG+AGG 0.556405 3_1:-90961366 Msa0387120:three_prime_UTR
AGAAGAAGAAGAAACAGAGG+AGG 0.556467 3_1:+90965910 None:intergenic
ATATGACGGCAGCAAGGGAA+AGG 0.557692 3_1:-90961843 Msa0387120:intron
CCCCAGAAATTGTGTGATTG+GGG 0.559399 3_1:+90965434 None:intergenic
AGAAGATATGACGGCAGCAA+GGG 0.559547 3_1:-90961848 Msa0387120:CDS
AAATGAAACCTTGATTCCAA+AGG 0.560360 3_1:+90964299 None:intergenic
GTCAATTCCTTGGGAAACGC+AGG 0.564340 3_1:+90965548 None:intergenic
CCATGGTTTAACACTTGGAA+GGG 0.565373 3_1:-90961675 Msa0387120:CDS
GCCATGCATATTTGCCAATG+TGG 0.566045 3_1:+90964049 None:intergenic
CCCTTCCAAGTGTTAAACCA+TGG 0.566770 3_1:+90961675 None:intergenic
GCCATGGTTTAACACTTGGA+AGG 0.567755 3_1:-90961676 Msa0387120:CDS
GTTTCATTTGCGATGATGGA+AGG 0.568224 3_1:-90964285 Msa0387120:intron
TAGAGGCCATCTACATCTAC+CGG 0.569072 3_1:+90961609 None:intergenic
GCAGCTCTAGAAGTTGGAGG+AGG 0.570437 3_1:-90961699 Msa0387120:CDS
CAGCTTACAACACCATTCCA+TGG 0.573304 3_1:+90962306 None:intergenic
ACAACAACATACTACAAGCC+AGG 0.575692 3_1:+90961561 None:intergenic
GGATAGAGTGGGATGGCGAG+AGG 0.577129 3_1:-90963458 Msa0387120:CDS
ATGGAATGGTGTTGTAAGCT+GGG 0.579542 3_1:-90962304 Msa0387120:CDS
GAAGCAACAACAGAGGATCA+AGG 0.583207 3_1:-90961962 Msa0387120:CDS
TGAGAATCCTGCGTTTCCCA+AGG 0.588380 3_1:-90965555 Msa0387120:CDS
GTACACGTCCTGTATATGGT+TGG 0.589209 3_1:-90964135 Msa0387120:CDS
AATTGGCACAATATGGACCT+AGG 0.592552 3_1:-90965517 Msa0387120:CDS
ATGGCAGCTCTAGAAGTTGG+AGG 0.592674 3_1:-90961702 Msa0387120:CDS
AAATTCGAAACCTCCGAACA+AGG 0.593736 3_1:-90965252 Msa0387120:CDS
CATACCTGTTGACAGGCCAC+CGG 0.595777 3_1:+90964027 None:intergenic
TGCAGACAACGGAAATTATG+TGG 0.596580 3_1:-90962250 Msa0387120:intron
AATCTCAGGTTGGATAGAGT+GGG 0.597137 3_1:-90963469 Msa0387120:intron
TTGTATCTCACATAGTGGAG+TGG 0.597174 3_1:-90963077 Msa0387120:intron
ATCTTATTCAGAAAAGAACT+GGG 0.601044 3_1:-90963415 Msa0387120:CDS
ATTGCACTTACAGCCGCTGG+TGG 0.602119 3_1:-90963005 Msa0387120:CDS
GGAGGAACCTCCTTGTTCGG+AGG 0.606309 3_1:+90965242 None:intergenic
TCTACACAGAAGTCAACTGC+TGG 0.606515 3_1:-90964100 Msa0387120:CDS
TTGTGGGAAAGAAGATATGA+CGG 0.606738 3_1:-90961857 Msa0387120:CDS
GTGGAGTGGATGTCTCATGC+AGG 0.608259 3_1:-90963063 Msa0387120:CDS
CAGATTGGAATTCACTATGG+TGG 0.609821 3_1:-90962348 Msa0387120:CDS
TGGTTTATGTCTGCAGACAA+CGG 0.617480 3_1:-90962261 Msa0387120:CDS
AAGAAGATATGACGGCAGCA+AGG 0.617497 3_1:-90961849 Msa0387120:CDS
ACTGCACGCAAATTCTTCGA+GGG 0.619317 3_1:-90965638 Msa0387120:CDS
TATTCAGAAAAGAACTGGGG+TGG 0.619500 3_1:-90963411 Msa0387120:CDS
ACCACATTGGCAAATATGCA+TGG 0.624184 3_1:-90964050 Msa0387120:CDS
AGCTGGGAAGTAGCTACTTG+GGG 0.631889 3_1:-90962288 Msa0387120:CDS
CCCCAATCACACAATTTCTG+GGG 0.639513 3_1:-90965434 Msa0387120:CDS
CAGCTCTAGAAGTTGGAGGA+GGG 0.650603 3_1:-90961698 Msa0387120:CDS
GTGCGAAGTTGACGATTGGG+AGG 0.658422 3_1:+90965764 None:intergenic
AAAGGGGAAGAATGTGCGTG+TGG 0.658861 3_1:+90965880 None:intergenic
ATAGCACGGCTAAGAACAGG+TGG 0.660468 3_1:+90961639 None:intergenic
AAGCCAGGTGGTTTAAACAG+AGG 0.667539 3_1:+90961576 None:intergenic
TGGCAAATATGCATGGCCGG+TGG 0.673011 3_1:-90964043 Msa0387120:CDS
TCAGGTTGGATAGAGTGGGA+TGG 0.674499 3_1:-90963465 Msa0387120:intron
AAGAACGGTAGTGATGAAAG+GGG 0.674727 3_1:+90965864 None:intergenic
CTACCGGTAATCCAATAGCA+CGG 0.689701 3_1:+90961625 None:intergenic
ATTGGACGTGACAAGTGACA+TGG 0.693270 3_1:-90961721 Msa0387120:CDS
AGATAGTTACCCGCTATGAG+GGG 0.698566 3_1:+90965742 None:intergenic
TGAATTAGAAGCAACAACAG+AGG 0.700490 3_1:-90961969 Msa0387120:CDS
CAACTTCGCACCCCTCATAG+CGG 0.701316 3_1:-90965752 Msa0387120:CDS
GCCCCAACACCAGTAAACCT+AGG 0.703555 3_1:+90965500 None:intergenic
AATTTGTCTCAATCCACCAG+CGG 0.711563 3_1:+90962992 None:intergenic
ATGAAACCTTGATTCCAAAG+GGG 0.725706 3_1:+90964301 None:intergenic
TTCGAAACCTCCGAACAAGG+AGG 0.737221 3_1:-90965249 Msa0387120:CDS
ACAACATACTACAAGCCAGG+TGG 0.761546 3_1:+90961564 None:intergenic
TCTTATTCAGAAAAGAACTG+GGG 0.762832 3_1:-90963414 Msa0387120:CDS
CATCAAAAGTTACTACACAG+CGG 0.801723 3_1:-90966143 Msa0387120:five_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATTTTTATGTAATTCTAATA+TGG - chr3_1:90962258-90962277 Msa0387120:CDS 10.0%
!! TAAAGAATAATAATTATTTC+TGG + chr3_1:90963228-90963247 None:intergenic 10.0%
!! TTGATACAAATTATAATTAT+AGG - chr3_1:90963428-90963447 Msa0387120:CDS 10.0%
!!! ATATAATTTTTTTGAACAAT+TGG - chr3_1:90963800-90963819 Msa0387120:intron 10.0%
!! AATACTAAAATTAAAATTGT+GGG - chr3_1:90965756-90965775 Msa0387120:CDS 10.0%
!! TTTATTCAATTTATGTGTTT+AGG - chr3_1:90961953-90961972 Msa0387120:CDS 15.0%
!!! TACAAGTTAATTTTTTTGAA+TGG - chr3_1:90962307-90962326 Msa0387120:CDS 15.0%
!! TACAAATTATAATTATAGGT+CGG - chr3_1:90963432-90963451 Msa0387120:CDS 15.0%
!!! TGTATTTTGATTGAAAATTA+TGG - chr3_1:90964387-90964406 Msa0387120:intron 15.0%
!!! AAATAAATGTTGATGATAAT+AGG - chr3_1:90964778-90964797 Msa0387120:intron 15.0%
!! AATATAATATACTGATAGAA+AGG + chr3_1:90965203-90965222 None:intergenic 15.0%
!! AACATAAAACATAATGTAAT+TGG + chr3_1:90965418-90965437 None:intergenic 15.0%
!!! TCAATTAATTATATTTTTGC+AGG - chr3_1:90965636-90965655 Msa0387120:CDS 15.0%
!! GAATACTAAAATTAAAATTG+TGG - chr3_1:90965755-90965774 Msa0387120:CDS 15.0%
!!! ATATTTTCTATGTATAAACA+TGG + chr3_1:90966180-90966199 None:intergenic 15.0%
!! TTTATTCGAAATCAATCAAT+AGG - chr3_1:90961423-90961442 Msa0387120:three_prime_UTR 20.0%
!! TTATTCGAAATCAATCAATA+GGG - chr3_1:90961424-90961443 Msa0387120:three_prime_UTR 20.0%
!!! GTTAATTTTTTTGAATGGTT+AGG - chr3_1:90962312-90962331 Msa0387120:CDS 20.0%
!!! CTTTACTTTATCTTTTGTAA+AGG + chr3_1:90962843-90962862 None:intergenic 20.0%
!!! ACTAGTTTTACTTATTTCAT+TGG - chr3_1:90963084-90963103 Msa0387120:intron 20.0%
!! ACTTTATCATTAAATTCCTA+TGG + chr3_1:90963286-90963305 None:intergenic 20.0%
!!! AATATTTTGTAGATATCAAG+TGG + chr3_1:90963750-90963769 None:intergenic 20.0%
!!! TATGATAATGAACATTTACA+AGG - chr3_1:90963878-90963897 Msa0387120:intron 20.0%
!! TATTAACAATATTGAATCTC+AGG - chr3_1:90964146-90964165 Msa0387120:CDS 20.0%
!!! TTTTCAATCAAAATACAAGA+AGG + chr3_1:90964384-90964403 None:intergenic 20.0%
!!! TTCTATTGTTCTTTTTGTTT+TGG - chr3_1:90964831-90964850 Msa0387120:intron 20.0%
!!! TACATTATGTTTTATGTTGA+TGG - chr3_1:90965420-90965439 Msa0387120:intron 20.0%
!! TTTGTCTTTGATTAGATTAA+TGG - chr3_1:90965847-90965866 Msa0387120:CDS 20.0%
!! TTAATGTATAAGAATGTTCA+TGG - chr3_1:90966236-90966255 Msa0387120:five_prime_UTR 20.0%
!!! ATTTTTTTGAATGGTTAGGT+AGG - chr3_1:90962316-90962335 Msa0387120:CDS 25.0%
!! TGTCATTTAAACATACATGA+GGG - chr3_1:90962625-90962644 Msa0387120:intron 25.0%
! TTGACTATTAAGACTCTATT+TGG - chr3_1:90962749-90962768 Msa0387120:intron 25.0%
! TCAAATAAGTCAATCCAAAT+AGG - chr3_1:90962969-90962988 Msa0387120:CDS 25.0%
!!! TCTGATTAGTCTAAATTTGT+TGG + chr3_1:90963154-90963173 None:intergenic 25.0%
! ATTTAGACTAATCAGACAAA+TGG - chr3_1:90963158-90963177 Msa0387120:intron 25.0%
!! TTTAATGATAAAGTGTTCGA+AGG - chr3_1:90963292-90963311 Msa0387120:intron 25.0%
! TAGACTAAAACTGAAATGAT+AGG - chr3_1:90963908-90963927 Msa0387120:intron 25.0%
! AATGAATATGAGACTTTAAG+AGG + chr3_1:90963993-90964012 None:intergenic 25.0%
! TAAAAGTTATTCACACTTGT+TGG - chr3_1:90964091-90964110 Msa0387120:CDS 25.0%
!! AGTTCTTTTCTGAATAAGAT+GGG + chr3_1:90964214-90964233 None:intergenic 25.0%
! ATCTTATTCAGAAAAGAACT+GGG - chr3_1:90964214-90964233 Msa0387120:intron 25.0%
! TATTAATCTACAATACTTGC+TGG + chr3_1:90964455-90964474 None:intergenic 25.0%
!!! TTTTTTTGTATCTCACATAG+TGG - chr3_1:90964547-90964566 Msa0387120:intron 25.0%
!!! AATGTTGATGATAATAGGAA+TGG - chr3_1:90964783-90964802 Msa0387120:intron 25.0%
! ATTTGACAAAATCTATAGTG+AGG - chr3_1:90964889-90964908 Msa0387120:intron 25.0%
! TGTTAAAATTTATTGTCGAG+TGG - chr3_1:90965017-90965036 Msa0387120:intron 25.0%
! GTTCTAATTTGAATGTCTAA+TGG - chr3_1:90965069-90965088 Msa0387120:intron 25.0%
! ATTTCATCTGTTTCAAATTG+TGG - chr3_1:90965101-90965120 Msa0387120:intron 25.0%
! ATGAATATACAACTCATACT+TGG - chr3_1:90965495-90965514 Msa0387120:CDS 25.0%
! TGAATATACAACTCATACTT+GGG - chr3_1:90965496-90965515 Msa0387120:CDS 25.0%
!! TTTTCTTAAAGTAAACATGC+TGG - chr3_1:90965593-90965612 Msa0387120:CDS 25.0%
! TGATGAATGTTATGTGAAAA+TGG - chr3_1:90965877-90965896 Msa0387120:CDS 25.0%
!! CGATGATTAGTTTGAAAGAA+CGG + chr3_1:90961783-90961802 None:intergenic 30.0%
! AGATTGAGATTGTTGTTGTT+CGG + chr3_1:90961821-90961840 None:intergenic 30.0%
GTATACATAAAACCTACCTT+AGG + chr3_1:90962411-90962430 None:intergenic 30.0%
! TTTAAAATATGCATGACGAC+AGG + chr3_1:90962501-90962520 None:intergenic 30.0%
! CTGTCATTTAAACATACATG+AGG - chr3_1:90962624-90962643 Msa0387120:intron 30.0%
ATTTAAACATACATGAGGGT+AGG - chr3_1:90962629-90962648 Msa0387120:intron 30.0%
! CACTTTTCCAATGAATAAGT+AGG - chr3_1:90962658-90962677 Msa0387120:intron 30.0%
! TTTTCCAATGAATAAGTAGG+TGG - chr3_1:90962661-90962680 Msa0387120:intron 30.0%
AATAAGCTGAAAGCAACTTA+TGG - chr3_1:90962878-90962897 Msa0387120:intron 30.0%
AAGTAGTTGCGAAATTGTTT+GGG + chr3_1:90962933-90962952 None:intergenic 30.0%
TAAGTAGTTGCGAAATTGTT+TGG + chr3_1:90962934-90962953 None:intergenic 30.0%
TTCTGTCACAATTACATTAC+TGG - chr3_1:90963187-90963206 Msa0387120:intron 30.0%
! TACATTACTGGTTATAAGAG+TGG - chr3_1:90963199-90963218 Msa0387120:intron 30.0%
GTTTGCAAATGCTTCTTATT+TGG - chr3_1:90963253-90963272 Msa0387120:intron 30.0%
AATGAAACCTTGATTCCAAA+GGG + chr3_1:90963332-90963351 None:intergenic 30.0%
AAATGAAACCTTGATTCCAA+AGG + chr3_1:90963333-90963352 None:intergenic 30.0%
CAGTTTATGTGAAGCTATTA+TGG - chr3_1:90963684-90963703 Msa0387120:intron 30.0%
! ATGTAATTTGCCAAAGTGAT+TGG - chr3_1:90963717-90963736 Msa0387120:intron 30.0%
ATGATGCTTGACAATTAGTT+TGG - chr3_1:90963931-90963950 Msa0387120:intron 30.0%
! TGATGCTTGACAATTAGTTT+GGG - chr3_1:90963932-90963951 Msa0387120:intron 30.0%
AACAATATTGAATCTCAGGT+TGG - chr3_1:90964150-90964169 Msa0387120:CDS 30.0%
! GTTCTTTTCTGAATAAGATG+GGG + chr3_1:90964213-90964232 None:intergenic 30.0%
! CAGTTCTTTTCTGAATAAGA+TGG + chr3_1:90964215-90964234 None:intergenic 30.0%
CATCTTATTCAGAAAAGAAC+TGG - chr3_1:90964213-90964232 Msa0387120:intron 30.0%
TCTTATTCAGAAAAGAACTG+GGG - chr3_1:90964215-90964234 Msa0387120:intron 30.0%
! TTTACCCAAAACCATTTTCT+CGG + chr3_1:90964251-90964270 None:intergenic 30.0%
ATTCAAGTAACCATAAAACG+AGG + chr3_1:90964429-90964448 None:intergenic 30.0%
ATGATAATAGGAATGGCTAA+AGG - chr3_1:90964790-90964809 Msa0387120:intron 30.0%
GCTTAAAATCATGAATGATG+TGG - chr3_1:90964989-90965008 Msa0387120:intron 30.0%
GAAACAGATGAAATCACTAA+CGG + chr3_1:90965095-90965114 None:intergenic 30.0%
TGTTTCAAATTGTGGTAACA+AGG - chr3_1:90965109-90965128 Msa0387120:intron 30.0%
!!! TCTTGTGTAGGATTAGTTTT+GGG - chr3_1:90965138-90965157 Msa0387120:intron 30.0%
!! AGTTTTATGAATTTGTGCCA+TGG - chr3_1:90965306-90965325 Msa0387120:intron 30.0%
GAATATACAACTCATACTTG+GGG - chr3_1:90965497-90965516 Msa0387120:CDS 30.0%
TATCTTTACAAGCTTGAGAA+AGG + chr3_1:90965726-90965745 None:intergenic 30.0%
GTGAAAATGGCAGATAATAT+TGG - chr3_1:90965890-90965909 Msa0387120:CDS 30.0%
! TCATGGTAAGTACAAACTTT+TGG - chr3_1:90966130-90966149 Msa0387120:five_prime_UTR 30.0%
!! GTAAGTACAAACTTTTGGAA+GGG - chr3_1:90966135-90966154 Msa0387120:five_prime_UTR 30.0%
ATTGTTAACGTGTGTTTAGT+TGG - chr3_1:90966260-90966279 Msa0387120:five_prime_UTR 30.0%
!!! TGTTCTTTTTCAGCTTCAGT+TGG + chr3_1:90961464-90961483 None:intergenic 35.0%
CATCAAAAGTTACTACACAG+CGG - chr3_1:90961486-90961505 Msa0387120:three_prime_UTR 35.0%
AAGAAAAGAACGTGTGATGT+TGG - chr3_1:90961553-90961572 Msa0387120:exon 35.0%
CAAGAATCATCATTCATCCA+TGG - chr3_1:90961654-90961673 Msa0387120:CDS 35.0%
ATTCAATAGCTTGGTTTCCA+TGG + chr3_1:90961674-90961693 None:intergenic 35.0%
GAAGGAAAGTGAATAAGAGA+AGG + chr3_1:90961700-90961719 None:intergenic 35.0%
AGAAGAAGAAGAAGAAACAG+AGG + chr3_1:90961725-90961744 None:intergenic 35.0%
AAAGAACGGTAGTGATGAAA+GGG + chr3_1:90961769-90961788 None:intergenic 35.0%
GTGTTTAGGTATCACTTTGA+TGG - chr3_1:90961967-90961986 Msa0387120:CDS 35.0%
!! CAAAAGCTTTGTCTCTTTTC+AGG + chr3_1:90962039-90962058 None:intergenic 35.0%
TCCAAAGTTGTCAATTCCTT+GGG + chr3_1:90962093-90962112 None:intergenic 35.0%
TTCCAAAGTTGTCAATTCCT+TGG + chr3_1:90962094-90962113 None:intergenic 35.0%
!! GGAATTGACAACTTTGGAAT+TGG - chr3_1:90962095-90962114 Msa0387120:intron 35.0%
!! ACTTTGGAATTGGCACAATA+TGG - chr3_1:90962105-90962124 Msa0387120:intron 35.0%
AGGTAGGAATGAATTGATGT+TGG - chr3_1:90962332-90962351 Msa0387120:CDS 35.0%
GGTAGGAATGAATTGATGTT+GGG - chr3_1:90962333-90962352 Msa0387120:CDS 35.0%
TACATAAAACCTACCTTAGG+AGG + chr3_1:90962408-90962427 None:intergenic 35.0%
AATTGAGCTACTGAACTGAA+GGG + chr3_1:90962575-90962594 None:intergenic 35.0%
TAATTGAGCTACTGAACTGA+AGG + chr3_1:90962576-90962595 None:intergenic 35.0%
ACACTCACTACAAATTAGAG+AGG - chr3_1:90962595-90962614 Msa0387120:intron 35.0%
CACTCACTACAAATTAGAGA+GGG - chr3_1:90962596-90962615 Msa0387120:intron 35.0%
GAGCTTATGAAAACTGTGTA+TGG + chr3_1:90962909-90962928 None:intergenic 35.0%
! CTTATTTGGTCACTTTCCAT+AGG - chr3_1:90963267-90963286 Msa0387120:intron 35.0%
ATGAAACCTTGATTCCAAAG+GGG + chr3_1:90963331-90963350 None:intergenic 35.0%
TATAGTACACGTCCTGTATA+TGG - chr3_1:90963490-90963509 Msa0387120:intron 35.0%
!!! TTCCTGTTTTTGAACCACAT+TGG - chr3_1:90963566-90963585 Msa0387120:intron 35.0%
ACTTTGGCAAATTACATGAG+TGG + chr3_1:90963714-90963733 None:intergenic 35.0%
ATTACATGCCAGTAGAATTG+TGG - chr3_1:90963767-90963786 Msa0387120:intron 35.0%
TAATTATTGCTAGAGCCATG+TGG - chr3_1:90963830-90963849 Msa0387120:intron 35.0%
! GACAATTAGTTTGGGAAGTA+TGG - chr3_1:90963940-90963959 Msa0387120:intron 35.0%
! TTACCCAAAACCATTTTCTC+GGG + chr3_1:90964250-90964269 None:intergenic 35.0%
CATAGAGTTTATCTGCACAT+CGG - chr3_1:90964301-90964320 Msa0387120:CDS 35.0%
!!! TGTTGCTTTTCCTCGTTTTA+TGG - chr3_1:90964416-90964435 Msa0387120:intron 35.0%
GACATTTGAAAATGCTGCAT+TGG - chr3_1:90964674-90964693 Msa0387120:intron 35.0%
TAATAGGAATGGCTAAAGGA+CGG - chr3_1:90964794-90964813 Msa0387120:intron 35.0%
TATTGCATTACTGACACTTC+AGG - chr3_1:90964950-90964969 Msa0387120:intron 35.0%
!!! CTCTTGTGTAGGATTAGTTT+TGG - chr3_1:90965137-90965156 Msa0387120:intron 35.0%
TATGAATTTGTGCCATGGAA+TGG - chr3_1:90965311-90965330 Msa0387120:intron 35.0%
AAGTAAACATGCTGGAATTC+TGG - chr3_1:90965601-90965620 Msa0387120:CDS 35.0%
TGAATTAGAAGCAACAACAG+AGG - chr3_1:90965660-90965679 Msa0387120:intron 35.0%
GCTTGTAAAGATACATGCTT+TGG - chr3_1:90965733-90965752 Msa0387120:intron 35.0%
TTGTGGGAAAGAAGATATGA+CGG - chr3_1:90965772-90965791 Msa0387120:CDS 35.0%
ACAGAGGAAACAGATTATAG+AGG + chr3_1:90966040-90966059 None:intergenic 35.0%
TCCATGTAAAACTTCTCTCT+TGG - chr3_1:90966098-90966117 Msa0387120:five_prime_UTR 35.0%
! ACCAAGAGAGAAGTTTTACA+TGG + chr3_1:90966102-90966121 None:intergenic 35.0%
! GGTAAGTACAAACTTTTGGA+AGG - chr3_1:90966134-90966153 Msa0387120:five_prime_UTR 35.0%
! AGAAGGTGGATTCAATAGCT+TGG + chr3_1:90961683-90961702 None:intergenic 40.0%
GGAAAGTGAATAAGAGAAGG+TGG + chr3_1:90961697-90961716 None:intergenic 40.0%
AGAAGAAGAAGAAACAGAGG+AGG + chr3_1:90961722-90961741 None:intergenic 40.0%
AAGAACGGTAGTGATGAAAG+GGG + chr3_1:90961768-90961787 None:intergenic 40.0%
GAAAGAACGGTAGTGATGAA+AGG + chr3_1:90961770-90961789 None:intergenic 40.0%
! TGTAGGAGAGTAAATGGGTT+TGG + chr3_1:90961845-90961864 None:intergenic 40.0%
AAGATAGTTACCCGCTATGA+GGG + chr3_1:90961891-90961910 None:intergenic 40.0%
AAAGATAGTTACCCGCTATG+AGG + chr3_1:90961892-90961911 None:intergenic 40.0%
!! GCTTTGTCTCTTTTCAGGAA+TGG + chr3_1:90962034-90962053 None:intergenic 40.0%
TCCCAAGGAATTGACAACTT+TGG - chr3_1:90962089-90962108 Msa0387120:intron 40.0%
AATTGGCACAATATGGACCT+AGG - chr3_1:90962112-90962131 Msa0387120:intron 40.0%
CAATATGGACCTAGGTTTAC+TGG - chr3_1:90962120-90962139 Msa0387120:intron 40.0%
! TGTGTGATTGGGGAGTATAT+TGG + chr3_1:90962188-90962207 None:intergenic 40.0%
TCCCCAATCACACAATTTCT+GGG - chr3_1:90962194-90962213 Msa0387120:intron 40.0%
TCCCCAGAAATTGTGTGATT+GGG + chr3_1:90962199-90962218 None:intergenic 40.0%
TTCCCCAGAAATTGTGTGAT+TGG + chr3_1:90962200-90962219 None:intergenic 40.0%
! GATGTTGGGTAACACTTTTG+CGG - chr3_1:90962347-90962366 Msa0387120:CDS 40.0%
AAATTCGAAACCTCCGAACA+AGG - chr3_1:90962377-90962396 Msa0387120:intron 40.0%
CTCACCACCTACTTATTCAT+TGG + chr3_1:90962668-90962687 None:intergenic 40.0%
AATAAGTAGGTGGTGAGTGT+TGG - chr3_1:90962671-90962690 Msa0387120:intron 40.0%
ATAAGTAGGTGGTGAGTGTT+GGG - chr3_1:90962672-90962691 Msa0387120:intron 40.0%
TGCGTCATTTAAGCATACCT+TGG - chr3_1:90962703-90962722 Msa0387120:intron 40.0%
GCGTCATTTAAGCATACCTT+GGG - chr3_1:90962704-90962723 Msa0387120:intron 40.0%
CGTCATTTAAGCATACCTTG+GGG - chr3_1:90962705-90962724 Msa0387120:intron 40.0%
GTCATTTAAGCATACCTTGG+GGG - chr3_1:90962706-90962725 Msa0387120:intron 40.0%
TAAGAAGAAAATGACCCCCA+AGG + chr3_1:90962723-90962742 None:intergenic 40.0%
ACTTATTTGAGCTCATCTGC+TGG + chr3_1:90962959-90962978 None:intergenic 40.0%
AGTCAATCCAAATAGGTCCT+AGG - chr3_1:90962976-90962995 Msa0387120:CDS 40.0%
GTTAACACCTAGGACCTATT+TGG + chr3_1:90962986-90963005 None:intergenic 40.0%
TAACAGGGAAGTTAACACCT+AGG + chr3_1:90962996-90963015 None:intergenic 40.0%
TAGTCGTTGACACTCTTTCA+AGG - chr3_1:90963107-90963126 Msa0387120:intron 40.0%
AGTCGTTGACACTCTTTCAA+GGG - chr3_1:90963108-90963127 Msa0387120:intron 40.0%
CAAGGTTTCATTTGCGATGA+TGG - chr3_1:90963340-90963359 Msa0387120:intron 40.0%
!! GTTTCATTTGCGATGATGGA+AGG - chr3_1:90963344-90963363 Msa0387120:intron 40.0%
TACACGTCCTGTATATGGTT+GGG - chr3_1:90963495-90963514 Msa0387120:intron 40.0%
TATATGGTTGGGGTGATGTT+GGG - chr3_1:90963506-90963525 Msa0387120:intron 40.0%
TGCCAATGTGGTTCAAAAAC+AGG + chr3_1:90963571-90963590 None:intergenic 40.0%
ACCACATTGGCAAATATGCA+TGG - chr3_1:90963579-90963598 Msa0387120:intron 40.0%
TGCCAGTAGAATTGTGGTAT+TGG - chr3_1:90963773-90963792 Msa0387120:intron 40.0%
GTCCAATACCACAATTCTAC+TGG + chr3_1:90963778-90963797 None:intergenic 40.0%
! TAGTTTGGGAAGTATGGTGT+TGG - chr3_1:90963946-90963965 Msa0387120:intron 40.0%
! TTTAAGAGGAGCACATTCCA+AGG + chr3_1:90963979-90963998 None:intergenic 40.0%
GTCTCATATTCATTTCTCGC+CGG - chr3_1:90963999-90964018 Msa0387120:intron 40.0%
!! AATCTCAGGTTGGATAGAGT+GGG - chr3_1:90964160-90964179 Msa0387120:CDS 40.0%
TATTCAGAAAAGAACTGGGG+TGG - chr3_1:90964218-90964237 Msa0387120:intron 40.0%
! GTTCCCGAGAAAATGGTTTT+GGG - chr3_1:90964244-90964263 Msa0387120:intron 40.0%
!! TTATCTGCACATCGGTTTCA+TGG - chr3_1:90964309-90964328 Msa0387120:CDS 40.0%
AACGAGGAAAAGCAACATTC+TGG + chr3_1:90964413-90964432 None:intergenic 40.0%
! TTGTATCTCACATAGTGGAG+TGG - chr3_1:90964552-90964571 Msa0387120:intron 40.0%
! GCTCAGTGTAATGTTTTCGA+AGG - chr3_1:90964588-90964607 Msa0387120:intron 40.0%
!!! AATGTTTTCGAAGGTGCTAG+TGG - chr3_1:90964597-90964616 Msa0387120:intron 40.0%
AATTTGTCTCAATCCACCAG+CGG + chr3_1:90964640-90964659 None:intergenic 40.0%
!! TGGTGGATTGAGACAAATTC+CGG - chr3_1:90964641-90964660 Msa0387120:intron 40.0%
TCAAATGTCTCAGTTAGTCC+CGG + chr3_1:90964663-90964682 None:intergenic 40.0%
! GCTGCATTGGTAACTTCATA+TGG - chr3_1:90964687-90964706 Msa0387120:intron 40.0%
AATAGGAATGGCTAAAGGAC+GGG - chr3_1:90964795-90964814 Msa0387120:intron 40.0%
GTCTATTTGCCTTCTTCTGT+TGG - chr3_1:90965160-90965179 Msa0387120:intron 40.0%
ATGTAGTGACCAACAGAAGA+AGG + chr3_1:90965172-90965191 None:intergenic 40.0%
TGTTGCAAATTAGCGCAGAT+TGG - chr3_1:90965266-90965285 Msa0387120:CDS 40.0%
CAGATTGGAATTCACTATGG+TGG - chr3_1:90965281-90965300 Msa0387120:CDS 40.0%
!! ATGGAATGGTGTTGTAAGCT+GGG - chr3_1:90965325-90965344 Msa0387120:intron 40.0%
AAGTAGCTACTTGGGGTTAT+TGG - chr3_1:90965348-90965367 Msa0387120:intron 40.0%
TGGTTTATGTCTGCAGACAA+CGG - chr3_1:90965368-90965387 Msa0387120:intron 40.0%
TGCAGACAACGGAAATTATG+TGG - chr3_1:90965379-90965398 Msa0387120:intron 40.0%
CAACTCATACTTGGGGTTAT+TGG - chr3_1:90965504-90965523 Msa0387120:CDS 40.0%
CCATGGTTTAACACTTGGAA+GGG - chr3_1:90965954-90965973 Msa0387120:CDS 40.0%
TTTCCTCTGTTTAAACCACC+TGG - chr3_1:90966050-90966069 Msa0387120:five_prime_UTR 40.0%
ACAACAACATACTACAAGCC+AGG + chr3_1:90966071-90966090 None:intergenic 40.0%
TCTCTTGGTACAGAGTTTCA+TGG - chr3_1:90966113-90966132 Msa0387120:five_prime_UTR 40.0%
GTTAACGTGTGTTTAGTTGG+AGG - chr3_1:90966263-90966282 Msa0387120:five_prime_UTR 40.0%
GAAGAAGAAACAGAGGAGGA+AGG + chr3_1:90961718-90961737 None:intergenic 45.0%
! GGAGGTGTAGGAGAGTAAAT+GGG + chr3_1:90961850-90961869 None:intergenic 45.0%
AGATAGTTACCCGCTATGAG+GGG + chr3_1:90961890-90961909 None:intergenic 45.0%
AACTGCACGCAAATTCTTCG+AGG - chr3_1:90961990-90962009 Msa0387120:intron 45.0%
ACTGCACGCAAATTCTTCGA+GGG - chr3_1:90961991-90962010 Msa0387120:intron 45.0%
GACCTAGGTTTACTGGTGTT+GGG - chr3_1:90962127-90962146 Msa0387120:intron 45.0%
! ACCTAGGTTTACTGGTGTTG+GGG - chr3_1:90962128-90962147 Msa0387120:intron 45.0%
CTCCCCAATCACACAATTTC+TGG - chr3_1:90962193-90962212 Msa0387120:intron 45.0%
CCCCAGAAATTGTGTGATTG+GGG + chr3_1:90962198-90962217 None:intergenic 45.0%
CCCCAATCACACAATTTCTG+GGG - chr3_1:90962195-90962214 Msa0387120:intron 45.0%
TTAGGAGGAACCTCCTTGTT+CGG + chr3_1:90962393-90962412 None:intergenic 45.0%
GCAAAGATGCAGCAGTAACA+GGG + chr3_1:90963011-90963030 None:intergenic 45.0%
AGCAAAGATGCAGCAGTAAC+AGG + chr3_1:90963012-90963031 None:intergenic 45.0%
!!! GTTTTCAAGTCACTCCCCTT+TGG - chr3_1:90963314-90963333 Msa0387120:intron 45.0%
AAACAGTAAAGACTGCTCGC+TGG - chr3_1:90963464-90963483 Msa0387120:CDS 45.0%
AACAGTAAAGACTGCTCGCT+GGG - chr3_1:90963465-90963484 Msa0387120:intron 45.0%
GTACACGTCCTGTATATGGT+TGG - chr3_1:90963494-90963513 Msa0387120:intron 45.0%
ACACGTCCTGTATATGGTTG+GGG - chr3_1:90963496-90963515 Msa0387120:intron 45.0%
ACATCACCCCAACCATATAC+AGG + chr3_1:90963505-90963524 None:intergenic 45.0%
GTATATGGTTGGGGTGATGT+TGG - chr3_1:90963505-90963524 Msa0387120:intron 45.0%
TCTACACAGAAGTCAACTGC+TGG - chr3_1:90963529-90963548 Msa0387120:intron 45.0%
GCCATGCATATTTGCCAATG+TGG + chr3_1:90963583-90963602 None:intergenic 45.0%
CATTGGCAAATATGCATGGC+CGG - chr3_1:90963583-90963602 Msa0387120:intron 45.0%
TGGCTAGATGCCAATCACTT+TGG + chr3_1:90963730-90963749 None:intergenic 45.0%
! TTTCTCGCCGGTGTCAATTT+CGG - chr3_1:90964011-90964030 Msa0387120:intron 45.0%
!! TCAATTTCGGTGGGCTAGTT+TGG - chr3_1:90964024-90964043 Msa0387120:intron 45.0%
!! GAATCTCAGGTTGGATAGAG+TGG - chr3_1:90964159-90964178 Msa0387120:CDS 45.0%
! CGTTCCCGAGAAAATGGTTT+TGG - chr3_1:90964243-90964262 Msa0387120:intron 45.0%
TGCAACACTCATCGAAACAC+TGG + chr3_1:90964516-90964535 None:intergenic 45.0%
!! GGTGGATTGAGACAAATTCC+GGG - chr3_1:90964642-90964661 Msa0387120:intron 45.0%
ATAGGAATGGCTAAAGGACG+GGG - chr3_1:90964796-90964815 Msa0387120:intron 45.0%
TATTGTCGAGTGGCTCAAGT+AGG - chr3_1:90965027-90965046 Msa0387120:intron 45.0%
!! ACAAGGTGTTGCTCTTGTGT+AGG - chr3_1:90965126-90965145 Msa0387120:intron 45.0%
GCGCAGATTGGAATTCACTA+TGG - chr3_1:90965278-90965297 Msa0387120:CDS 45.0%
CAGCTTACAACACCATTCCA+TGG + chr3_1:90965326-90965345 None:intergenic 45.0%
!! CATGGAATGGTGTTGTAAGC+TGG - chr3_1:90965324-90965343 Msa0387120:intron 45.0%
TAAGCTGGGAAGTAGCTACT+TGG - chr3_1:90965339-90965358 Msa0387120:intron 45.0%
AAGCTGGGAAGTAGCTACTT+GGG - chr3_1:90965340-90965359 Msa0387120:intron 45.0%
! CTGGAATTCTGGCTAATGAC+AGG - chr3_1:90965612-90965631 Msa0387120:CDS 45.0%
GAAGCAACAACAGAGGATCA+AGG - chr3_1:90965667-90965686 Msa0387120:intron 45.0%
AAGAAGATATGACGGCAGCA+AGG - chr3_1:90965780-90965799 Msa0387120:CDS 45.0%
AGAAGATATGACGGCAGCAA+GGG - chr3_1:90965781-90965800 Msa0387120:CDS 45.0%
ATTGGACGTGACAAGTGACA+TGG - chr3_1:90965908-90965927 Msa0387120:CDS 45.0%
GCCATGGTTTAACACTTGGA+AGG - chr3_1:90965953-90965972 Msa0387120:CDS 45.0%
CCCTTCCAAGTGTTAAACCA+TGG + chr3_1:90965957-90965976 None:intergenic 45.0%
! TAGCCGTGCTATTGGATTAC+CGG - chr3_1:90966001-90966020 Msa0387120:five_prime_UTR 45.0%
CTACCGGTAATCCAATAGCA+CGG + chr3_1:90966007-90966026 None:intergenic 45.0%
GGATTACCGGTAGATGTAGA+TGG - chr3_1:90966014-90966033 Msa0387120:five_prime_UTR 45.0%
TAGAGGCCATCTACATCTAC+CGG + chr3_1:90966023-90966042 None:intergenic 45.0%
AAGCCAGGTGGTTTAAACAG+AGG + chr3_1:90966056-90966075 None:intergenic 45.0%
ACAACATACTACAAGCCAGG+TGG + chr3_1:90966068-90966087 None:intergenic 45.0%
AAAGGGGAAGAATGTGCGTG+TGG + chr3_1:90961752-90961771 None:intergenic 50.0%
! GGGAGGTGTAGGAGAGTAAA+TGG + chr3_1:90961851-90961870 None:intergenic 50.0%
! AGTTGACGATTGGGAGGTGT+AGG + chr3_1:90961862-90961881 None:intergenic 50.0%
CACGCAAATTCTTCGAGGGT+TGG - chr3_1:90961995-90962014 Msa0387120:intron 50.0%
TGAGAATCCTGCGTTTCCCA+AGG - chr3_1:90962074-90962093 Msa0387120:intron 50.0%
GTCAATTCCTTGGGAAACGC+AGG + chr3_1:90962084-90962103 None:intergenic 50.0%
GGACCTAGGTTTACTGGTGT+TGG - chr3_1:90962126-90962145 Msa0387120:intron 50.0%
! GGTGTTGGGGCACAAATTCT+TGG - chr3_1:90962141-90962160 Msa0387120:intron 50.0%
TTCGAAACCTCCGAACAAGG+AGG - chr3_1:90962380-90962399 Msa0387120:intron 50.0%
GAACAAGGAGGTTCCTCCTA+AGG - chr3_1:90962392-90962411 Msa0387120:intron 50.0%
AAGGAGGTTCCTCCTAAGGT+AGG - chr3_1:90962396-90962415 Msa0387120:intron 50.0%
!! GTCACTCCCCTTTGGAATCA+AGG - chr3_1:90963322-90963341 Msa0387120:intron 50.0%
GACAGCACATACCTGTTGAC+AGG + chr3_1:90963612-90963631 None:intergenic 50.0%
!! TGGGAAGTATGGTGTTGGCT+TGG - chr3_1:90963951-90963970 Msa0387120:intron 50.0%
!! GGGAAGTATGGTGTTGGCTT+GGG - chr3_1:90963952-90963971 Msa0387120:intron 50.0%
!! GGAAGTATGGTGTTGGCTTG+GGG - chr3_1:90963953-90963972 Msa0387120:intron 50.0%
TAGCCCACCGAAATTGACAC+CGG + chr3_1:90964021-90964040 None:intergenic 50.0%
!! TCAGGTTGGATAGAGTGGGA+TGG - chr3_1:90964164-90964183 Msa0387120:CDS 50.0%
GAAATTGCACTTACAGCCGC+TGG - chr3_1:90964621-90964640 Msa0387120:intron 50.0%
AGCTGGGAAGTAGCTACTTG+GGG - chr3_1:90965341-90965360 Msa0387120:intron 50.0%
GAAAGGCCAGCTTCTGATGT+TGG + chr3_1:90965709-90965728 None:intergenic 50.0%
ATATGACGGCAGCAAGGGAA+AGG - chr3_1:90965786-90965805 Msa0387120:CDS 50.0%
!! GACATGGCAGCTCTAGAAGT+TGG - chr3_1:90965924-90965943 Msa0387120:CDS 50.0%
!! ATGGCAGCTCTAGAAGTTGG+AGG - chr3_1:90965927-90965946 Msa0387120:CDS 50.0%
!! CAGCTCTAGAAGTTGGAGGA+GGG - chr3_1:90965931-90965950 Msa0387120:CDS 50.0%
GAGGGCCATGGTTTAACACT+TGG - chr3_1:90965949-90965968 Msa0387120:CDS 50.0%
ATAGCACGGCTAAGAACAGG+TGG + chr3_1:90965993-90966012 None:intergenic 50.0%
CCAATAGCACGGCTAAGAAC+AGG + chr3_1:90965996-90966015 None:intergenic 50.0%
CCTGTTCTTAGCCGTGCTAT+TGG - chr3_1:90965993-90966012 Msa0387120:five_prime_UTR 50.0%
GTGCGAAGTTGACGATTGGG+AGG + chr3_1:90961868-90961887 None:intergenic 55.0%
GGGGTGCGAAGTTGACGATT+GGG + chr3_1:90961871-90961890 None:intergenic 55.0%
! AGGGGTGCGAAGTTGACGAT+TGG + chr3_1:90961872-90961891 None:intergenic 55.0%
CAACTTCGCACCCCTCATAG+CGG - chr3_1:90961877-90961896 Msa0387120:CDS 55.0%
AACTTCGCACCCCTCATAGC+GGG - chr3_1:90961878-90961897 Msa0387120:CDS 55.0%
GCCCCAACACCAGTAAACCT+AGG + chr3_1:90962132-90962151 None:intergenic 55.0%
! GGGGCACAAATTCTTGGTGC+TGG - chr3_1:90962147-90962166 Msa0387120:intron 55.0%
CACAGAAGTCAACTGCTGGC+TGG - chr3_1:90963533-90963552 Msa0387120:intron 55.0%
TGGCAAATATGCATGGCCGG+TGG - chr3_1:90963586-90963605 Msa0387120:intron 55.0%
CATACCTGTTGACAGGCCAC+CGG + chr3_1:90963605-90963624 None:intergenic 55.0%
GCTAGAGCCATGTGGTGAGT+CGG - chr3_1:90963838-90963857 Msa0387120:intron 55.0%
CTAGAGCCATGTGGTGAGTC+GGG - chr3_1:90963839-90963858 Msa0387120:intron 55.0%
CCTATTCCCGACTCACCACA+TGG + chr3_1:90963848-90963867 None:intergenic 55.0%
CCATGTGGTGAGTCGGGAAT+AGG - chr3_1:90963845-90963864 Msa0387120:intron 55.0%
! TCGCCGGTGTCAATTTCGGT+GGG - chr3_1:90964015-90964034 Msa0387120:intron 55.0%
! GTGGAGCGTTCCCGAGAAAA+TGG - chr3_1:90964237-90964256 Msa0387120:intron 55.0%
GTGGAGTGGATGTCTCATGC+AGG - chr3_1:90964566-90964585 Msa0387120:intron 55.0%
ATTGCACTTACAGCCGCTGG+TGG - chr3_1:90964624-90964643 Msa0387120:intron 55.0%
CGTGCTCCAACATCAGAAGC+TGG - chr3_1:90965700-90965719 Msa0387120:intron 55.0%
!! GCAGCTCTAGAAGTTGGAGG+AGG - chr3_1:90965930-90965949 Msa0387120:CDS 55.0%
TAGAAGTTGGAGGAGGGCCA+TGG - chr3_1:90965937-90965956 Msa0387120:CDS 55.0%
GGAGGAACCTCCTTGTTCGG+AGG + chr3_1:90962390-90962409 None:intergenic 60.0%
!! ATGGTGTTGGCTTGGGGCCT+TGG - chr3_1:90963959-90963978 Msa0387120:intron 60.0%
! CTCGCCGGTGTCAATTTCGG+TGG - chr3_1:90964014-90964033 Msa0387120:intron 60.0%
GGATAGAGTGGGATGGCGAG+AGG - chr3_1:90964171-90964190 Msa0387120:CDS 60.0%
ATGGCCGGTGGCCTGTCAAC+AGG - chr3_1:90963598-90963617 Msa0387120:intron 65.0%
Chromosome Type Strat End Strand Name
chr3_1 gene 90961365 90966286 90961365 ID=Msa0387120;Name=Msa0387120
chr3_1 mRNA 90961365 90966286 90961365 ID=Msa0387120-mRNA-1;Parent=Msa0387120;Name=Msa0387120-mRNA-1;_AED=0.23;_eAED=0.23;_QI=308|0.88|0.8|1|0.88|1|10|207|498
chr3_1 exon 90961365 90961748 90961365 ID=Msa0387120-mRNA-1:exon:25263;Parent=Msa0387120-mRNA-1
chr3_1 exon 90961844 90961993 90961844 ID=Msa0387120-mRNA-1:exon:25262;Parent=Msa0387120-mRNA-1
chr3_1 exon 90962251 90962367 90962251 ID=Msa0387120-mRNA-1:exon:25261;Parent=Msa0387120-mRNA-1
chr3_1 exon 90962956 90963084 90962956 ID=Msa0387120-mRNA-1:exon:25260;Parent=Msa0387120-mRNA-1
chr3_1 exon 90963359 90963483 90963359 ID=Msa0387120-mRNA-1:exon:25259;Parent=Msa0387120-mRNA-1
chr3_1 exon 90964032 90964201 90964032 ID=Msa0387120-mRNA-1:exon:25258;Parent=Msa0387120-mRNA-1
chr3_1 exon 90964286 90964362 90964286 ID=Msa0387120-mRNA-1:exon:25257;Parent=Msa0387120-mRNA-1
chr3_1 exon 90965238 90965317 90965238 ID=Msa0387120-mRNA-1:exon:25256;Parent=Msa0387120-mRNA-1
chr3_1 exon 90965432 90965676 90965432 ID=Msa0387120-mRNA-1:exon:25255;Parent=Msa0387120-mRNA-1
chr3_1 exon 90965752 90966286 90965752 ID=Msa0387120-mRNA-1:exon:25254;Parent=Msa0387120-mRNA-1
chr3_1 five_prime_UTR 90965979 90966286 90965979 ID=Msa0387120-mRNA-1:five_prime_utr;Parent=Msa0387120-mRNA-1
chr3_1 CDS 90965752 90965978 90965752 ID=Msa0387120-mRNA-1:cds;Parent=Msa0387120-mRNA-1
chr3_1 CDS 90965432 90965676 90965432 ID=Msa0387120-mRNA-1:cds;Parent=Msa0387120-mRNA-1
chr3_1 CDS 90965238 90965317 90965238 ID=Msa0387120-mRNA-1:cds;Parent=Msa0387120-mRNA-1
chr3_1 CDS 90964286 90964362 90964286 ID=Msa0387120-mRNA-1:cds;Parent=Msa0387120-mRNA-1
chr3_1 CDS 90964032 90964201 90964032 ID=Msa0387120-mRNA-1:cds;Parent=Msa0387120-mRNA-1
chr3_1 CDS 90963359 90963483 90963359 ID=Msa0387120-mRNA-1:cds;Parent=Msa0387120-mRNA-1
chr3_1 CDS 90962956 90963084 90962956 ID=Msa0387120-mRNA-1:cds;Parent=Msa0387120-mRNA-1
chr3_1 CDS 90962251 90962367 90962251 ID=Msa0387120-mRNA-1:cds;Parent=Msa0387120-mRNA-1
chr3_1 CDS 90961844 90961993 90961844 ID=Msa0387120-mRNA-1:cds;Parent=Msa0387120-mRNA-1
chr3_1 CDS 90961572 90961748 90961572 ID=Msa0387120-mRNA-1:cds;Parent=Msa0387120-mRNA-1
chr3_1 three_prime_UTR 90961365 90961571 90961365 ID=Msa0387120-mRNA-1:three_prime_utr;Parent=Msa0387120-mRNA-1
Gene Sequence

>Msa0387120

ATGGAAACCAAGCTATTGAATCCACCTTCTCTTATTCACTTTCCTTCCTCCTCTGTTTCTTCTTCTTCTTCTTTATCCACACGCACATTCTTCCCCTTTCATCACTACCGTTCTTTCAAACTAATCATCGCTCACAATTCACATACCGAACAACAACAATCTCAATCTTCCAAACCCATTTACTCTCCTACACCTCCCAATCGTCAACTTCGCACCCCTCATAGCGGGTATCACTTTGATGGAACTGCACGCAAATTCTTCGAGGGTTGGTACTTCAAAGTTTCCATTCCTGAAAAGAGACAAAGCTTTTGCTTTATGTATTCTGTTGAGAATCCTGCGTTTCCCAAGGAATTGACAACTTTGGAATTGGCACAATATGGACCTAGGTTTACTGGTGTTGGGGCACAAATTCTTGGTGCTGGTGATAAATACATTTGCCAATATACTCCCCAATCACACAATTTCTGGGGAAGTAGGAATGAATTGATGTTGGGTAACACTTTTGCGGCTAAGCAAAATTCGAAACCTCCGAACAAGGAGGTTCCTCCTAAGGAATTTAATGATAAAGTGTTCGAAGGTTTTCAAGTCACTCCCCTTTGGAATCAAGGTTTCATTTGCGATGATGGAAGGTCGGATTATGTAGAAACAGTAAAGACTGCTCGCTGGGAGTATAGTACACGTCCTGTATATGGTTGGGGTGATGTTGGGTCTACACAGAAGTCAACTGCTGGCTGGCTTGCAGCTTTTCCTGTTTTTGAACCACATTGGCAAATATGCATGGCCGGTGGCCTGTCAACAGGTTGGATAGAGTGGGATGGCGAGAGGATTGAGTTTGAAAATGCCCCATCTTATTCAGAAAAGAACTGGGGTGGAGCGTTCCCGAGAAAATGGTTTTGGGTAAAAAAACTCTCTTTCTTCACTGAATGGAGTGGATGTCTCATGCAGGCTCAGTGTAATGTTTTCGAAGGTGCTAGTGGAGAAATTGCACTTACAGCCGCTGGTGGATTGAGACAAATTCCGGGACTAACTGAGACATTTGAAAATGCTGCATTGATTGGAATTCACTATGGTGGAAAGTTTTATGAATTTGTGCCATGGAATGGTGTTGTAAGCTGGGAAGTAGCTACTTGGGGTTATTGGTTTATGTCTGCAGACAACGGAAATTATGTGGTTGAATTAGAAGCAACAACAGAGGATCAAGGTACTACATTGCGTGCTCCAACATCAGAAGCTGGCCTTTCTCAAGCTTGTAAAGATACATGCTTTGGAATACTAAAATTAAAATTGTGGGAAAGAAGATATGACGGCAGCAAGGGAAAGATAATATTGGACGTGACAAGTGACATGGCAGCTCTAGAAGTTGGAGGAGGGCCATGGTTTAACACTTGGAAGGGAAAAACATCAACTCCACCTGTTCTTAGCCGTGCTATTGGATTACCGGTAGATGTAGATGGCCTCTATAATCTGTTTCCTCTGTTTAAACCACCTGGCTTGTAG

Protein sequence

>Msa0387120

METKLLNPPSLIHFPSSSVSSSSSLSTRTFFPFHHYRSFKLIIAHNSHTEQQQSQSSKPIYSPTPPNRQLRTPHSGYHFDGTARKFFEGWYFKVSIPEKRQSFCFMYSVENPAFPKELTTLELAQYGPRFTGVGAQILGAGDKYICQYTPQSHNFWGSRNELMLGNTFAAKQNSKPPNKEVPPKEFNDKVFEGFQVTPLWNQGFICDDGRSDYVETVKTARWEYSTRPVYGWGDVGSTQKSTAGWLAAFPVFEPHWQICMAGGLSTGWIEWDGERIEFENAPSYSEKNWGGAFPRKWFWVKKLSFFTEWSGCLMQAQCNVFEGASGEIALTAAGGLRQIPGLTETFENAALIGIHYGGKFYEFVPWNGVVSWEVATWGYWFMSADNGNYVVELEATTEDQGTTLRAPTSEAGLSQACKDTCFGILKLKLWERRYDGSKGKIILDVTSDMAALEVGGGPWFNTWKGKTSTPPVLSRAIGLPVDVDGLYNLFPLFKPPGL*