Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1400300 | XP_003591393.1 | 98.649 | 296 | 4 | 0 | 1 | 296 | 1 | 296 | 0.0 | 593 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1400300 | G7ICX3 | 98.649 | 296 | 4 | 0 | 1 | 296 | 1 | 296 | 0.0 | 593 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0011040 | Msa1400300 | 0.801830 | 7.482353e-49 | -8.615850e-47 |
| Msa0013270 | Msa1400300 | 0.859597 | 3.706246e-63 | -8.615850e-47 |
| Msa0024650 | Msa1400300 | 0.804799 | 1.816310e-49 | -8.615850e-47 |
| Msa0030090 | Msa1400300 | 0.804198 | 2.423839e-49 | -8.615850e-47 |
| Msa0037180 | Msa1400300 | 0.810834 | 9.464967e-51 | -8.615850e-47 |
| Msa0040930 | Msa1400300 | 0.802521 | 5.392458e-49 | -8.615850e-47 |
| Msa0045810 | Msa1400300 | 0.803987 | 2.681232e-49 | -8.615850e-47 |
| Msa0062190 | Msa1400300 | 0.827744 | 1.320951e-54 | -8.615850e-47 |
| Msa0072180 | Msa1400300 | 0.805424 | 1.343866e-49 | -8.615850e-47 |
| Msa0106540 | Msa1400300 | 0.841744 | 3.945889e-58 | -8.615850e-47 |
| Msa0120450 | Msa1400300 | 0.801416 | 9.096189e-49 | -8.615850e-47 |
| Msa1400300 | Msa1405830 | 0.841892 | 3.606224e-58 | -8.615850e-47 |
| Msa1400300 | Msa1407810 | 0.829860 | 4.063757e-55 | -8.615850e-47 |
| Msa1400300 | Msa1433360 | 0.809173 | 2.157132e-50 | -8.615850e-47 |
| Msa1400300 | Msa1437780 | 0.829729 | 4.373544e-55 | -8.615850e-47 |
| Msa1400300 | Msa1455360 | 0.836620 | 8.409690e-57 | -8.615850e-47 |
| Msa1400300 | Msa1462610 | 0.804282 | 2.328237e-49 | -8.615850e-47 |
| Msa0610700 | Msa1400300 | -0.825968 | 3.508704e-54 | -8.615850e-47 |
| Msa0618680 | Msa1400300 | 0.832284 | 1.032033e-55 | -8.615850e-47 |
| Msa0618700 | Msa1400300 | 0.808116 | 3.627781e-50 | -8.615850e-47 |
| Msa0629160 | Msa1400300 | 0.817488 | 3.213207e-52 | -8.615850e-47 |
| Msa0685060 | Msa1400300 | 0.805344 | 1.396998e-49 | -8.615850e-47 |
| Msa0701660 | Msa1400300 | 0.803560 | 3.289433e-49 | -8.615850e-47 |
| Msa0739720 | Msa1400300 | 0.809482 | 1.851590e-50 | -8.615850e-47 |
| Msa0766170 | Msa1400300 | 0.813799 | 2.132146e-51 | -8.615850e-47 |
| Msa0773960 | Msa1400300 | 0.808080 | 3.692110e-50 | -8.615850e-47 |
| Msa0792410 | Msa1400300 | 0.803743 | 3.013417e-49 | -8.615850e-47 |
| Msa0841520 | Msa1400300 | 0.815860 | 7.445632e-52 | -8.615850e-47 |
| Msa0143590 | Msa1400300 | 0.805097 | 1.573788e-49 | -8.615850e-47 |
| Msa0170080 | Msa1400300 | 0.804567 | 2.030423e-49 | -8.615850e-47 |
| Msa0177320 | Msa1400300 | 0.817160 | 3.808075e-52 | -8.615850e-47 |
| Msa1240490 | Msa1400300 | 0.807615 | 4.635688e-50 | -8.615850e-47 |
| Msa1242490 | Msa1400300 | 0.805665 | 1.196144e-49 | -8.615850e-47 |
| Msa1263110 | Msa1400300 | 0.840504 | 8.356764e-58 | -8.615850e-47 |
| Msa1266120 | Msa1400300 | -0.802023 | 6.830694e-49 | -8.615850e-47 |
| Msa1273320 | Msa1400300 | 0.827373 | 1.621964e-54 | -8.615850e-47 |
| Msa1281780 | Msa1400300 | 0.838791 | 2.331691e-57 | -8.615850e-47 |
| Msa1295210 | Msa1400300 | -0.805145 | 1.537244e-49 | -8.615850e-47 |
| Msa1321010 | Msa1400300 | 0.816154 | 6.399583e-52 | -8.615850e-47 |
| Msa1342360 | Msa1400300 | -0.802040 | 6.773286e-49 | -8.615850e-47 |
| Msa0386880 | Msa1400300 | 0.825836 | 3.771900e-54 | -8.615850e-47 |
| Msa0403740 | Msa1400300 | -0.802934 | 4.432671e-49 | -8.615850e-47 |
| Msa0412560 | Msa1400300 | 0.806289 | 8.844415e-50 | -8.615850e-47 |
| Msa0456450 | Msa1400300 | -0.803077 | 4.140437e-49 | -8.615850e-47 |
| Msa1013190 | Msa1400300 | 0.808257 | 3.385071e-50 | -8.615850e-47 |
| Msa1029780 | Msa1400300 | 0.806793 | 6.922832e-50 | -8.615850e-47 |
| Msa1029830 | Msa1400300 | 0.818484 | 1.913233e-52 | -8.615850e-47 |
| Msa1029840 | Msa1400300 | 0.816095 | 6.598101e-52 | -8.615850e-47 |
| Msa1029860 | Msa1400300 | 0.824002 | 1.021910e-53 | -8.615850e-47 |
| Msa1068710 | Msa1400300 | 0.814207 | 1.732360e-51 | -8.615850e-47 |
| Msa1068730 | Msa1400300 | 0.813726 | 2.212657e-51 | -8.615850e-47 |
| Msa1068950 | Msa1400300 | 0.816908 | 4.339617e-52 | -8.615850e-47 |
| Msa1103450 | Msa1400300 | 0.814825 | 1.264490e-51 | -8.615850e-47 |
| Msa0241750 | Msa1400300 | 0.801960 | 7.034502e-49 | -8.615850e-47 |
| Msa0264230 | Msa1400300 | 0.824758 | 6.785382e-54 | -8.615850e-47 |
| Msa0267450 | Msa1400300 | -0.802499 | 5.448896e-49 | -8.615850e-47 |
| Msa0267510 | Msa1400300 | -0.802160 | 6.400669e-49 | -8.615850e-47 |
| Msa0279810 | Msa1400300 | 0.829676 | 4.505185e-55 | -8.615850e-47 |
| Msa0302200 | Msa1400300 | 0.831367 | 1.738001e-55 | -8.615850e-47 |
| Msa0307630 | Msa1400300 | 0.807601 | 4.668412e-50 | -8.615850e-47 |
| Msa0316020 | Msa1400300 | 0.800565 | 1.357852e-48 | -8.615850e-47 |
| Msa0319220 | Msa1400300 | 0.838837 | 2.268308e-57 | -8.615850e-47 |
| Msa0339530 | Msa1400300 | 0.832064 | 1.170099e-55 | -8.615850e-47 |
| Msa0354600 | Msa1400300 | 0.819078 | 1.402551e-52 | -8.615850e-47 |
| Msa0364030 | Msa1400300 | -0.802910 | 4.483358e-49 | -8.615850e-47 |
| Msa1120960 | Msa1400300 | 0.827678 | 1.369998e-54 | -8.615850e-47 |
| Msa1147010 | Msa1400300 | 0.823543 | 1.308698e-53 | -8.615850e-47 |
| Msa1156720 | Msa1400300 | 0.810740 | 9.917013e-51 | -8.615850e-47 |
| Msa1156730 | Msa1400300 | 0.825621 | 4.243140e-54 | -8.615850e-47 |
| Msa1156740 | Msa1400300 | 0.801848 | 7.419722e-49 | -8.615850e-47 |
| Msa1223960 | Msa1400300 | 0.825543 | 4.426219e-54 | -8.615850e-47 |
| Msa1223990 | Msa1400300 | 0.815982 | 6.992876e-52 | -8.615850e-47 |
| Msa0565700 | Msa1400300 | 0.846705 | 1.835937e-59 | -8.615850e-47 |
| Msa0567330 | Msa1400300 | 0.831662 | 1.470416e-55 | -8.615850e-47 |
| Msa0567570 | Msa1400300 | 0.825809 | 3.828152e-54 | -8.615850e-47 |
| Msa0576320 | Msa1400300 | 0.825473 | 4.599769e-54 | -8.615850e-47 |
| Msa0579070 | Msa1400300 | -0.806995 | 6.275177e-50 | -8.615850e-47 |
| Msa0842750 | Msa1400300 | 0.834525 | 2.850371e-56 | -8.615850e-47 |
| Msa0903020 | Msa1400300 | 0.814165 | 1.770036e-51 | -8.615850e-47 |
| Msa0931680 | Msa1400300 | 0.805074 | 1.590697e-49 | -8.615850e-47 |
| Msa0932140 | Msa1400300 | 0.814024 | 1.901964e-51 | -8.615850e-47 |
| Msa0964400 | Msa1400300 | -0.804886 | 1.741571e-49 | -8.615850e-47 |
| Msa0967210 | Msa1400300 | 0.804790 | 1.824120e-49 | -8.615850e-47 |
| Msa0970270 | Msa1400300 | 0.814866 | 1.238682e-51 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1400300 | MtrunA17_Chr1g0194611 | 98.649 | 296 | 4 | 0 | 1 | 296 | 1 | 296 | 0.0 | 593 |
| Msa1400300 | MtrunA17_Chr7g0270041 | 52.244 | 312 | 121 | 7 | 1 | 296 | 1 | 300 | 1.19e-90 | 271 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1400300 | AT2G47360.1 | 42.553 | 235 | 100 | 6 | 63 | 278 | 63 | 281 | 3.85e-50 | 168 |
| Msa1400300 | AT1G02570.1 | 38.559 | 236 | 129 | 5 | 64 | 296 | 56 | 278 | 5.96e-44 | 151 |
| Msa1400300 | AT1G02575.1 | 37.755 | 196 | 102 | 8 | 75 | 267 | 67 | 245 | 2.67e-31 | 118 |
Find 76 sgRNAs with CRISPR-Local
Find 158 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AGAGAGGAAGTTGAGAATTT+AGG | 0.190418 | tig0022428:+95251 | Msa1400300:CDS |
| TACATGAAACAACACAAATT+TGG | 0.272884 | tig0022428:+95105 | Msa1400300:CDS |
| TTTCAAATATGTGTTGGTTT+AGG | 0.275769 | tig0022428:+94963 | Msa1400300:CDS |
| ATAGTTGAAGAAGAAATCTT+TGG | 0.285743 | tig0022428:-94613 | None:intergenic |
| ATGGATTTGAAGGTAGAATT+TGG | 0.286827 | tig0022428:-94739 | None:intergenic |
| GACGATGGTTCTAGTAGTTT+TGG | 0.302357 | tig0022428:+95038 | Msa1400300:CDS |
| AGTTGAGAATTTAGGTGTTA+TGG | 0.309415 | tig0022428:+95259 | Msa1400300:CDS |
| ACAGATTAATGAGGTGGAAT+TGG | 0.353558 | tig0022428:+95433 | Msa1400300:CDS |
| TACTTTGATCAATGGTTTGA+TGG | 0.354298 | tig0022428:+94851 | Msa1400300:CDS |
| GCTAAGAGAAGAAAAGATAG+AGG | 0.357745 | tig0022428:-94702 | None:intergenic |
| GTCTTTACATGTCATGGAAA+TGG | 0.358547 | tig0022428:+94925 | Msa1400300:CDS |
| GAGATTATGGATTGAGAAAG+TGG | 0.371004 | tig0022428:+95187 | Msa1400300:CDS |
| CTTCTCTTAGCTAGTCTCTC+TGG | 0.372938 | tig0022428:+94714 | Msa1400300:CDS |
| GTGGTTGTGGCAGGTAGTTT+AGG | 0.376947 | tig0022428:+95206 | Msa1400300:CDS |
| ATGACATGTAAAGACGAGTT+TGG | 0.390360 | tig0022428:-94917 | None:intergenic |
| GGTATGGTGAGGATTGTTAA+AGG | 0.394274 | tig0022428:+95365 | Msa1400300:CDS |
| AAAAGAGAAAAGATAAGGTA+AGG | 0.399838 | tig0022428:-94772 | None:intergenic |
| AGGAGGTGGAAGATCCTTGC+AGG | 0.405724 | tig0022428:-94651 | None:intergenic |
| AAGGTAAGGGTTGTTGTGAA+TGG | 0.409710 | tig0022428:-94758 | None:intergenic |
| AGTGTAGCTACTTTGATCAA+TGG | 0.424175 | tig0022428:+94843 | Msa1400300:CDS |
| AGTTTGGAGAAGAATAGAAT+TGG | 0.429200 | tig0022428:-94901 | None:intergenic |
| GAAAAGATAGAGGGAGGAGA+AGG | 0.430845 | tig0022428:-94692 | None:intergenic |
| AAGCAGAATGATATTTCTGT+TGG | 0.438907 | tig0022428:+95079 | Msa1400300:CDS |
| GTGGGAATAGAAGAATTTGT+TGG | 0.445922 | tig0022428:+95311 | Msa1400300:CDS |
| TGATTTCTCTATGTAGAAGA+AGG | 0.454333 | tig0022428:+95405 | Msa1400300:CDS |
| TATTATCTAACTGTCACAAT+TGG | 0.461048 | tig0022428:+95344 | Msa1400300:CDS |
| GGATTGTTAAAGGTCTTATG+TGG | 0.482472 | tig0022428:+95375 | Msa1400300:CDS |
| AATTGGATGAATCATTCATA+AGG | 0.483645 | tig0022428:-94884 | None:intergenic |
| AACAAAGAAAGATGAAATGA+TGG | 0.484417 | tig0022428:+95286 | Msa1400300:CDS |
| AAAAGATAGAGGGAGGAGAA+GGG | 0.494482 | tig0022428:-94691 | None:intergenic |
| GTTGTTGTGAATGGATTTGA+AGG | 0.496977 | tig0022428:-94749 | None:intergenic |
| GTTTAGGAACATTGTGGTGG+TGG | 0.497414 | tig0022428:+95222 | Msa1400300:CDS |
| ATGGATTGAGAAAGTGGTTG+TGG | 0.498685 | tig0022428:+95193 | Msa1400300:CDS |
| TCATTCTACACAAAATGGAT+TGG | 0.502402 | tig0022428:+94580 | None:intergenic |
| GAAAGATGAAATGATGGAGG+TGG | 0.504281 | tig0022428:+95292 | Msa1400300:CDS |
| GGATAGTGATGGTGAGGAGG+TGG | 0.504511 | tig0022428:-94665 | None:intergenic |
| ACTTTGATCAATGGTTTGAT+GGG | 0.504932 | tig0022428:+94852 | Msa1400300:CDS |
| GGGTGAGGATAGTGATGGTG+AGG | 0.507453 | tig0022428:-94671 | None:intergenic |
| GTGGTGGATGACACTATATT+TGG | 0.509880 | tig0022428:+95149 | Msa1400300:CDS |
| AAAGAGAAAAGATAAGGTAA+GGG | 0.510747 | tig0022428:-94771 | None:intergenic |
| AGCAGAATGATATTTCTGTT+GGG | 0.516467 | tig0022428:+95080 | Msa1400300:CDS |
| ATAGAGGGAGGAGAAGGGTG+AGG | 0.523270 | tig0022428:-94686 | None:intergenic |
| TGAGGATAGTGATGGTGAGG+AGG | 0.526694 | tig0022428:-94668 | None:intergenic |
| ACAAGAACATAGAGAATACA+TGG | 0.527333 | tig0022428:-94810 | None:intergenic |
| TAGAAGAATTTGTTGGATGG+TGG | 0.527444 | tig0022428:+95318 | Msa1400300:CDS |
| AAACTCGTCTTTACATGTCA+TGG | 0.528069 | tig0022428:+94919 | Msa1400300:CDS |
| ATAGCAAAAGAGAAAAGATA+AGG | 0.540841 | tig0022428:-94777 | None:intergenic |
| GATGACACTATATTTGGTGT+TGG | 0.542896 | tig0022428:+95155 | Msa1400300:CDS |
| ATTGAAGCAAGCATTGCAGC+TGG | 0.549729 | tig0022428:+94987 | Msa1400300:CDS |
| TCTAACTGTCACAATTGGTA+TGG | 0.554472 | tig0022428:+95349 | Msa1400300:CDS |
| AAAGATGAAATGATGGAGGT+GGG | 0.557012 | tig0022428:+95293 | Msa1400300:CDS |
| CAAAGTAGCTACACTTACAA+TGG | 0.557980 | tig0022428:-94835 | None:intergenic |
| ATTGAGAAAGTGGTTGTGGC+AGG | 0.560585 | tig0022428:+95197 | Msa1400300:CDS |
| GAGAAGGGTGAGGATAGTGA+TGG | 0.583678 | tig0022428:-94676 | None:intergenic |
| AGAGAAGAAAAGATAGAGGG+AGG | 0.590383 | tig0022428:-94698 | None:intergenic |
| AAAGAAAGATGAAATGATGG+AGG | 0.600117 | tig0022428:+95289 | Msa1400300:CDS |
| CTAAGAGAAGAAAAGATAGA+GGG | 0.601150 | tig0022428:-94701 | None:intergenic |
| TTGCTATCTACACCCCTGCA+AGG | 0.606162 | tig0022428:+94637 | Msa1400300:CDS |
| GGTAACACAGATTAATGAGG+TGG | 0.609717 | tig0022428:+95427 | Msa1400300:CDS |
| CTGTCACAATTGGTATGGTG+AGG | 0.612817 | tig0022428:+95354 | Msa1400300:CDS |
| GATTTCTCTATGTAGAAGAA+GGG | 0.614319 | tig0022428:+95406 | Msa1400300:CDS |
| AATATAGTGTCATCCACCAC+TGG | 0.619508 | tig0022428:-95146 | None:intergenic |
| GAATAGAAGAATTTGTTGGA+TGG | 0.624191 | tig0022428:+95315 | Msa1400300:CDS |
| GATTGTTAAAGGTCTTATGT+GGG | 0.625679 | tig0022428:+95376 | Msa1400300:CDS |
| AACATAGAGAATACATGGGG+AGG | 0.632641 | tig0022428:-94805 | None:intergenic |
| AAGGGTAACACAGATTAATG+AGG | 0.632667 | tig0022428:+95424 | Msa1400300:CDS |
| GGAGGTGGAAGATCCTTGCA+GGG | 0.633817 | tig0022428:-94650 | None:intergenic |
| GTGGTGGTGGAAGTTGAGAG+AGG | 0.639795 | tig0022428:+95235 | Msa1400300:CDS |
| CAAGAACATAGAGAATACAT+GGG | 0.640474 | tig0022428:-94809 | None:intergenic |
| AGTTGTTGTGAGACCAGTGG+TGG | 0.655710 | tig0022428:+95133 | Msa1400300:CDS |
| GTAGTTTAGGAACATTGTGG+TGG | 0.662467 | tig0022428:+95219 | Msa1400300:CDS |
| CAGGTAGTTTAGGAACATTG+TGG | 0.681497 | tig0022428:+95216 | Msa1400300:CDS |
| GAGGTGGAAGATCCTTGCAG+GGG | 0.700426 | tig0022428:-94649 | None:intergenic |
| AAGAGTTGTTGTGAGACCAG+TGG | 0.721375 | tig0022428:+95130 | Msa1400300:CDS |
| AAGAACATAGAGAATACATG+GGG | 0.725668 | tig0022428:-94808 | None:intergenic |
| ACTGAGTCAGAATGATGACA+AGG | 0.757755 | tig0022428:+95457 | Msa1400300:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| ! | ATAGTTGAAGAAGAAATCTT+TGG | - | tig0022428:94616-94635 | None:intergenic | 25.0% |
| ! | AAAGAGAAAAGATAAGGTAA+GGG | - | tig0022428:94774-94793 | None:intergenic | 25.0% |
| ! | AAAAGAGAAAAGATAAGGTA+AGG | - | tig0022428:94775-94794 | None:intergenic | 25.0% |
| ! | ATAGCAAAAGAGAAAAGATA+AGG | - | tig0022428:94780-94799 | None:intergenic | 25.0% |
| ! | AATTGGATGAATCATTCATA+AGG | - | tig0022428:94887-94906 | None:intergenic | 25.0% |
| !!! | TTCACTTTTCAAATATGTGT+TGG | + | tig0022428:94957-94976 | Msa1400300:CDS | 25.0% |
| !!! | TTTCAAATATGTGTTGGTTT+AGG | + | tig0022428:94963-94982 | Msa1400300:CDS | 25.0% |
| ! | TACATGAAACAACACAAATT+TGG | + | tig0022428:95105-95124 | Msa1400300:CDS | 25.0% |
| ! | AACAAAGAAAGATGAAATGA+TGG | + | tig0022428:95286-95305 | Msa1400300:CDS | 25.0% |
| ! | TATTATCTAACTGTCACAAT+TGG | + | tig0022428:95344-95363 | Msa1400300:CDS | 25.0% |
| ! | ATAGTTGAAGAAGAAATCTT+TGG | - | tig0022428:94616-94635 | None:intergenic | 25.0% |
| ! | AAAGAGAAAAGATAAGGTAA+GGG | - | tig0022428:94774-94793 | None:intergenic | 25.0% |
| ! | AAAAGAGAAAAGATAAGGTA+AGG | - | tig0022428:94775-94794 | None:intergenic | 25.0% |
| ! | ATAGCAAAAGAGAAAAGATA+AGG | - | tig0022428:94780-94799 | None:intergenic | 25.0% |
| ! | AATTGGATGAATCATTCATA+AGG | - | tig0022428:94887-94906 | None:intergenic | 25.0% |
| !!! | TTCACTTTTCAAATATGTGT+TGG | + | tig0022428:94957-94976 | Msa1400300:CDS | 25.0% |
| !!! | TTTCAAATATGTGTTGGTTT+AGG | + | tig0022428:94963-94982 | Msa1400300:CDS | 25.0% |
| ! | TACATGAAACAACACAAATT+TGG | + | tig0022428:95105-95124 | Msa1400300:CDS | 25.0% |
| ! | AACAAAGAAAGATGAAATGA+TGG | + | tig0022428:95286-95305 | Msa1400300:CDS | 25.0% |
| ! | TATTATCTAACTGTCACAAT+TGG | + | tig0022428:95344-95363 | Msa1400300:CDS | 25.0% |
| CTAAGAGAAGAAAAGATAGA+GGG | - | tig0022428:94704-94723 | None:intergenic | 30.0% | |
| ATGGATTTGAAGGTAGAATT+TGG | - | tig0022428:94742-94761 | None:intergenic | 30.0% | |
| AAGAACATAGAGAATACATG+GGG | - | tig0022428:94811-94830 | None:intergenic | 30.0% | |
| CAAGAACATAGAGAATACAT+GGG | - | tig0022428:94812-94831 | None:intergenic | 30.0% | |
| ACAAGAACATAGAGAATACA+TGG | - | tig0022428:94813-94832 | None:intergenic | 30.0% | |
| TACTTTGATCAATGGTTTGA+TGG | + | tig0022428:94851-94870 | Msa1400300:CDS | 30.0% | |
| ACTTTGATCAATGGTTTGAT+GGG | + | tig0022428:94852-94871 | Msa1400300:CDS | 30.0% | |
| AGTTTGGAGAAGAATAGAAT+TGG | - | tig0022428:94904-94923 | None:intergenic | 30.0% | |
| ! | AAGCAGAATGATATTTCTGT+TGG | + | tig0022428:95079-95098 | Msa1400300:CDS | 30.0% |
| ! | AGCAGAATGATATTTCTGTT+GGG | + | tig0022428:95080-95099 | Msa1400300:CDS | 30.0% |
| TTGGAAAAAGAGAGAGATTA+TGG | + | tig0022428:95174-95193 | Msa1400300:CDS | 30.0% | |
| AGTTGAGAATTTAGGTGTTA+TGG | + | tig0022428:95259-95278 | Msa1400300:CDS | 30.0% | |
| AAAGAAAGATGAAATGATGG+AGG | + | tig0022428:95289-95308 | Msa1400300:CDS | 30.0% | |
| !! | GAATAGAAGAATTTGTTGGA+TGG | + | tig0022428:95315-95334 | Msa1400300:CDS | 30.0% |
| ! | GATTGTTAAAGGTCTTATGT+GGG | + | tig0022428:95376-95395 | Msa1400300:CDS | 30.0% |
| TGATTTCTCTATGTAGAAGA+AGG | + | tig0022428:95405-95424 | Msa1400300:CDS | 30.0% | |
| GATTTCTCTATGTAGAAGAA+GGG | + | tig0022428:95406-95425 | Msa1400300:CDS | 30.0% | |
| CTAAGAGAAGAAAAGATAGA+GGG | - | tig0022428:94704-94723 | None:intergenic | 30.0% | |
| ATGGATTTGAAGGTAGAATT+TGG | - | tig0022428:94742-94761 | None:intergenic | 30.0% | |
| AAGAACATAGAGAATACATG+GGG | - | tig0022428:94811-94830 | None:intergenic | 30.0% | |
| CAAGAACATAGAGAATACAT+GGG | - | tig0022428:94812-94831 | None:intergenic | 30.0% | |
| ACAAGAACATAGAGAATACA+TGG | - | tig0022428:94813-94832 | None:intergenic | 30.0% | |
| TACTTTGATCAATGGTTTGA+TGG | + | tig0022428:94851-94870 | Msa1400300:CDS | 30.0% | |
| ACTTTGATCAATGGTTTGAT+GGG | + | tig0022428:94852-94871 | Msa1400300:CDS | 30.0% | |
| AGTTTGGAGAAGAATAGAAT+TGG | - | tig0022428:94904-94923 | None:intergenic | 30.0% | |
| ! | AAGCAGAATGATATTTCTGT+TGG | + | tig0022428:95079-95098 | Msa1400300:CDS | 30.0% |
| ! | AGCAGAATGATATTTCTGTT+GGG | + | tig0022428:95080-95099 | Msa1400300:CDS | 30.0% |
| TTGGAAAAAGAGAGAGATTA+TGG | + | tig0022428:95174-95193 | Msa1400300:CDS | 30.0% | |
| AGTTGAGAATTTAGGTGTTA+TGG | + | tig0022428:95259-95278 | Msa1400300:CDS | 30.0% | |
| AAAGAAAGATGAAATGATGG+AGG | + | tig0022428:95289-95308 | Msa1400300:CDS | 30.0% | |
| !! | GAATAGAAGAATTTGTTGGA+TGG | + | tig0022428:95315-95334 | Msa1400300:CDS | 30.0% |
| ! | GATTGTTAAAGGTCTTATGT+GGG | + | tig0022428:95376-95395 | Msa1400300:CDS | 30.0% |
| TGATTTCTCTATGTAGAAGA+AGG | + | tig0022428:95405-95424 | Msa1400300:CDS | 30.0% | |
| GATTTCTCTATGTAGAAGAA+GGG | + | tig0022428:95406-95425 | Msa1400300:CDS | 30.0% | |
| GCTAAGAGAAGAAAAGATAG+AGG | - | tig0022428:94705-94724 | None:intergenic | 35.0% | |
| ! | GTTGTTGTGAATGGATTTGA+AGG | - | tig0022428:94752-94771 | None:intergenic | 35.0% |
| CAAAGTAGCTACACTTACAA+TGG | - | tig0022428:94838-94857 | None:intergenic | 35.0% | |
| ! | AGTGTAGCTACTTTGATCAA+TGG | + | tig0022428:94843-94862 | Msa1400300:CDS | 35.0% |
| ATGACATGTAAAGACGAGTT+TGG | - | tig0022428:94920-94939 | None:intergenic | 35.0% | |
| AAACTCGTCTTTACATGTCA+TGG | + | tig0022428:94919-94938 | Msa1400300:CDS | 35.0% | |
| GTCTTTACATGTCATGGAAA+TGG | + | tig0022428:94925-94944 | Msa1400300:CDS | 35.0% | |
| ATCGTCAAAAACATCGTTGT+CGG | - | tig0022428:95024-95043 | None:intergenic | 35.0% | |
| !! | GATGACACTATATTTGGTGT+TGG | + | tig0022428:95155-95174 | Msa1400300:CDS | 35.0% |
| ! | GAGATTATGGATTGAGAAAG+TGG | + | tig0022428:95187-95206 | Msa1400300:CDS | 35.0% |
| AGAGAGGAAGTTGAGAATTT+AGG | + | tig0022428:95251-95270 | Msa1400300:CDS | 35.0% | |
| ! | AAAGATGAAATGATGGAGGT+GGG | + | tig0022428:95293-95312 | Msa1400300:CDS | 35.0% |
| GTGGGAATAGAAGAATTTGT+TGG | + | tig0022428:95311-95330 | Msa1400300:CDS | 35.0% | |
| !! | TAGAAGAATTTGTTGGATGG+TGG | + | tig0022428:95318-95337 | Msa1400300:CDS | 35.0% |
| TCTAACTGTCACAATTGGTA+TGG | + | tig0022428:95349-95368 | Msa1400300:CDS | 35.0% | |
| ! | GGATTGTTAAAGGTCTTATG+TGG | + | tig0022428:95375-95394 | Msa1400300:CDS | 35.0% |
| AAGGGTAACACAGATTAATG+AGG | + | tig0022428:95424-95443 | Msa1400300:CDS | 35.0% | |
| ACAGATTAATGAGGTGGAAT+TGG | + | tig0022428:95433-95452 | Msa1400300:CDS | 35.0% | |
| GCTAAGAGAAGAAAAGATAG+AGG | - | tig0022428:94705-94724 | None:intergenic | 35.0% | |
| ! | GTTGTTGTGAATGGATTTGA+AGG | - | tig0022428:94752-94771 | None:intergenic | 35.0% |
| CAAAGTAGCTACACTTACAA+TGG | - | tig0022428:94838-94857 | None:intergenic | 35.0% | |
| ! | AGTGTAGCTACTTTGATCAA+TGG | + | tig0022428:94843-94862 | Msa1400300:CDS | 35.0% |
| ATGACATGTAAAGACGAGTT+TGG | - | tig0022428:94920-94939 | None:intergenic | 35.0% | |
| AAACTCGTCTTTACATGTCA+TGG | + | tig0022428:94919-94938 | Msa1400300:CDS | 35.0% | |
| GTCTTTACATGTCATGGAAA+TGG | + | tig0022428:94925-94944 | Msa1400300:CDS | 35.0% | |
| ATCGTCAAAAACATCGTTGT+CGG | - | tig0022428:95024-95043 | None:intergenic | 35.0% | |
| !! | GATGACACTATATTTGGTGT+TGG | + | tig0022428:95155-95174 | Msa1400300:CDS | 35.0% |
| ! | GAGATTATGGATTGAGAAAG+TGG | + | tig0022428:95187-95206 | Msa1400300:CDS | 35.0% |
| AGAGAGGAAGTTGAGAATTT+AGG | + | tig0022428:95251-95270 | Msa1400300:CDS | 35.0% | |
| ! | AAAGATGAAATGATGGAGGT+GGG | + | tig0022428:95293-95312 | Msa1400300:CDS | 35.0% |
| GTGGGAATAGAAGAATTTGT+TGG | + | tig0022428:95311-95330 | Msa1400300:CDS | 35.0% | |
| !! | TAGAAGAATTTGTTGGATGG+TGG | + | tig0022428:95318-95337 | Msa1400300:CDS | 35.0% |
| TCTAACTGTCACAATTGGTA+TGG | + | tig0022428:95349-95368 | Msa1400300:CDS | 35.0% | |
| ! | GGATTGTTAAAGGTCTTATG+TGG | + | tig0022428:95375-95394 | Msa1400300:CDS | 35.0% |
| AAGGGTAACACAGATTAATG+AGG | + | tig0022428:95424-95443 | Msa1400300:CDS | 35.0% | |
| ACAGATTAATGAGGTGGAAT+TGG | + | tig0022428:95433-95452 | Msa1400300:CDS | 35.0% | |
| AAAAGATAGAGGGAGGAGAA+GGG | - | tig0022428:94694-94713 | None:intergenic | 40.0% | |
| AGAGAAGAAAAGATAGAGGG+AGG | - | tig0022428:94701-94720 | None:intergenic | 40.0% | |
| AAGGTAAGGGTTGTTGTGAA+TGG | - | tig0022428:94761-94780 | None:intergenic | 40.0% | |
| AACATAGAGAATACATGGGG+AGG | - | tig0022428:94808-94827 | None:intergenic | 40.0% | |
| !! | GACAACGATGTTTTTGACGA+TGG | + | tig0022428:95023-95042 | Msa1400300:CDS | 40.0% |
| !!! | GACGATGGTTCTAGTAGTTT+TGG | + | tig0022428:95038-95057 | Msa1400300:CDS | 40.0% |
| AATATAGTGTCATCCACCAC+TGG | - | tig0022428:95149-95168 | None:intergenic | 40.0% | |
| !! | GTGGTGGATGACACTATATT+TGG | + | tig0022428:95149-95168 | Msa1400300:CDS | 40.0% |
| ! | ATGGATTGAGAAAGTGGTTG+TGG | + | tig0022428:95193-95212 | Msa1400300:CDS | 40.0% |
| CAGGTAGTTTAGGAACATTG+TGG | + | tig0022428:95216-95235 | Msa1400300:CDS | 40.0% | |
| GTAGTTTAGGAACATTGTGG+TGG | + | tig0022428:95219-95238 | Msa1400300:CDS | 40.0% | |
| ! | GAAAGATGAAATGATGGAGG+TGG | + | tig0022428:95292-95311 | Msa1400300:CDS | 40.0% |
| GGTATGGTGAGGATTGTTAA+AGG | + | tig0022428:95365-95384 | Msa1400300:CDS | 40.0% | |
| GGTAACACAGATTAATGAGG+TGG | + | tig0022428:95427-95446 | Msa1400300:CDS | 40.0% | |
| ACTGAGTCAGAATGATGACA+AGG | + | tig0022428:95457-95476 | Msa1400300:CDS | 40.0% | |
| AAAAGATAGAGGGAGGAGAA+GGG | - | tig0022428:94694-94713 | None:intergenic | 40.0% | |
| AGAGAAGAAAAGATAGAGGG+AGG | - | tig0022428:94701-94720 | None:intergenic | 40.0% | |
| AAGGTAAGGGTTGTTGTGAA+TGG | - | tig0022428:94761-94780 | None:intergenic | 40.0% | |
| AACATAGAGAATACATGGGG+AGG | - | tig0022428:94808-94827 | None:intergenic | 40.0% | |
| !! | GACAACGATGTTTTTGACGA+TGG | + | tig0022428:95023-95042 | Msa1400300:CDS | 40.0% |
| !!! | GACGATGGTTCTAGTAGTTT+TGG | + | tig0022428:95038-95057 | Msa1400300:CDS | 40.0% |
| AATATAGTGTCATCCACCAC+TGG | - | tig0022428:95149-95168 | None:intergenic | 40.0% | |
| !! | GTGGTGGATGACACTATATT+TGG | + | tig0022428:95149-95168 | Msa1400300:CDS | 40.0% |
| ! | ATGGATTGAGAAAGTGGTTG+TGG | + | tig0022428:95193-95212 | Msa1400300:CDS | 40.0% |
| CAGGTAGTTTAGGAACATTG+TGG | + | tig0022428:95216-95235 | Msa1400300:CDS | 40.0% | |
| GTAGTTTAGGAACATTGTGG+TGG | + | tig0022428:95219-95238 | Msa1400300:CDS | 40.0% | |
| ! | GAAAGATGAAATGATGGAGG+TGG | + | tig0022428:95292-95311 | Msa1400300:CDS | 40.0% |
| GGTATGGTGAGGATTGTTAA+AGG | + | tig0022428:95365-95384 | Msa1400300:CDS | 40.0% | |
| GGTAACACAGATTAATGAGG+TGG | + | tig0022428:95427-95446 | Msa1400300:CDS | 40.0% | |
| ACTGAGTCAGAATGATGACA+AGG | + | tig0022428:95457-95476 | Msa1400300:CDS | 40.0% | |
| GAAAAGATAGAGGGAGGAGA+AGG | - | tig0022428:94695-94714 | None:intergenic | 45.0% | |
| ! | CTTCTCTTAGCTAGTCTCTC+TGG | + | tig0022428:94714-94733 | Msa1400300:CDS | 45.0% |
| ! | ATTGAAGCAAGCATTGCAGC+TGG | + | tig0022428:94987-95006 | Msa1400300:CDS | 45.0% |
| AAGAGTTGTTGTGAGACCAG+TGG | + | tig0022428:95130-95149 | Msa1400300:CDS | 45.0% | |
| ATTGAGAAAGTGGTTGTGGC+AGG | + | tig0022428:95197-95216 | Msa1400300:CDS | 45.0% | |
| GTTTAGGAACATTGTGGTGG+TGG | + | tig0022428:95222-95241 | Msa1400300:CDS | 45.0% | |
| CTGTCACAATTGGTATGGTG+AGG | + | tig0022428:95354-95373 | Msa1400300:CDS | 45.0% | |
| GAAAAGATAGAGGGAGGAGA+AGG | - | tig0022428:94695-94714 | None:intergenic | 45.0% | |
| ! | CTTCTCTTAGCTAGTCTCTC+TGG | + | tig0022428:94714-94733 | Msa1400300:CDS | 45.0% |
| ! | ATTGAAGCAAGCATTGCAGC+TGG | + | tig0022428:94987-95006 | Msa1400300:CDS | 45.0% |
| AAGAGTTGTTGTGAGACCAG+TGG | + | tig0022428:95130-95149 | Msa1400300:CDS | 45.0% | |
| ATTGAGAAAGTGGTTGTGGC+AGG | + | tig0022428:95197-95216 | Msa1400300:CDS | 45.0% | |
| GTTTAGGAACATTGTGGTGG+TGG | + | tig0022428:95222-95241 | Msa1400300:CDS | 45.0% | |
| CTGTCACAATTGGTATGGTG+AGG | + | tig0022428:95354-95373 | Msa1400300:CDS | 45.0% | |
| TTGCTATCTACACCCCTGCA+AGG | + | tig0022428:94637-94656 | Msa1400300:CDS | 50.0% | |
| ! | TGAGGATAGTGATGGTGAGG+AGG | - | tig0022428:94671-94690 | None:intergenic | 50.0% |
| GAGAAGGGTGAGGATAGTGA+TGG | - | tig0022428:94679-94698 | None:intergenic | 50.0% | |
| AGTTGTTGTGAGACCAGTGG+TGG | + | tig0022428:95133-95152 | Msa1400300:CDS | 50.0% | |
| GTGGTTGTGGCAGGTAGTTT+AGG | + | tig0022428:95206-95225 | Msa1400300:CDS | 50.0% | |
| TTGCTATCTACACCCCTGCA+AGG | + | tig0022428:94637-94656 | Msa1400300:CDS | 50.0% | |
| ! | TGAGGATAGTGATGGTGAGG+AGG | - | tig0022428:94671-94690 | None:intergenic | 50.0% |
| GAGAAGGGTGAGGATAGTGA+TGG | - | tig0022428:94679-94698 | None:intergenic | 50.0% | |
| AGTTGTTGTGAGACCAGTGG+TGG | + | tig0022428:95133-95152 | Msa1400300:CDS | 50.0% | |
| GTGGTTGTGGCAGGTAGTTT+AGG | + | tig0022428:95206-95225 | Msa1400300:CDS | 50.0% | |
| GAGGTGGAAGATCCTTGCAG+GGG | - | tig0022428:94652-94671 | None:intergenic | 55.0% | |
| GGAGGTGGAAGATCCTTGCA+GGG | - | tig0022428:94653-94672 | None:intergenic | 55.0% | |
| AGGAGGTGGAAGATCCTTGC+AGG | - | tig0022428:94654-94673 | None:intergenic | 55.0% | |
| ! | GGATAGTGATGGTGAGGAGG+TGG | - | tig0022428:94668-94687 | None:intergenic | 55.0% |
| ! | GGGTGAGGATAGTGATGGTG+AGG | - | tig0022428:94674-94693 | None:intergenic | 55.0% |
| ATAGAGGGAGGAGAAGGGTG+AGG | - | tig0022428:94689-94708 | None:intergenic | 55.0% | |
| !! | GTGGTGGTGGAAGTTGAGAG+AGG | + | tig0022428:95235-95254 | Msa1400300:CDS | 55.0% |
| GAGGTGGAAGATCCTTGCAG+GGG | - | tig0022428:94652-94671 | None:intergenic | 55.0% | |
| GGAGGTGGAAGATCCTTGCA+GGG | - | tig0022428:94653-94672 | None:intergenic | 55.0% | |
| AGGAGGTGGAAGATCCTTGC+AGG | - | tig0022428:94654-94673 | None:intergenic | 55.0% | |
| ! | GGATAGTGATGGTGAGGAGG+TGG | - | tig0022428:94668-94687 | None:intergenic | 55.0% |
| ! | GGGTGAGGATAGTGATGGTG+AGG | - | tig0022428:94674-94693 | None:intergenic | 55.0% |
| ATAGAGGGAGGAGAAGGGTG+AGG | - | tig0022428:94689-94708 | None:intergenic | 55.0% | |
| !! | GTGGTGGTGGAAGTTGAGAG+AGG | + | tig0022428:95235-95254 | Msa1400300:CDS | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0022428 | gene | 94594 | 95484 | 94594 | ID=Msa1400300;Name=Msa1400300 |
| tig0022428 | mRNA | 94594 | 95484 | 94594 | ID=Msa1400300-mRNA-1;Parent=Msa1400300;Name=Msa1400300-mRNA-1;_AED=0.00;_eAED=0.00;_QI=0|-1|0|1|-1|1|1|0|296 |
| tig0022428 | exon | 94594 | 95484 | 94594 | ID=Msa1400300-mRNA-1:exon:17629;Parent=Msa1400300-mRNA-1 |
| tig0022428 | CDS | 94594 | 95484 | 94594 | ID=Msa1400300-mRNA-1:cds;Parent=Msa1400300-mRNA-1 |
| Gene Sequence |
| Protein sequence |
