AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1078120


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1078120 MtrunA17_Chr7g0262621 96.403 139 4 1 1 139 1 138 4.04e-94 268
Msa1078120 MtrunA17_Chr1g0182931 57.971 138 47 3 11 138 11 147 3.80e-34 116
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1078120 AT2G20260.1 52.667 150 48 3 6 139 3 145 1.62e-38 127
Msa1078120 AT4G28750.1 66.355 107 25 1 43 138 35 141 4.40e-32 111

Find 45 sgRNAs with CRISPR-Local

Find 158 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ACATTACTGCTATCAATTTA+AGG 0.157746 7_2:-77004578 Msa1078120:three_prime_UTR
GTGTTGCCTGAAACATTATT+AGG 0.211871 7_2:+77005648 None:intergenic
TAATTCAAGTTGCTAGATTA+AGG 0.232537 7_2:-77004768 Msa1078120:three_prime_UTR
CCAATTCTAGACTTGTTGTT+AGG 0.258382 7_2:-77005563 Msa1078120:CDS
TTGTCCCCTAATAATGTTTC+AGG 0.258400 7_2:-77005654 Msa1078120:CDS
ACACACCTTAGCACCTCTTT+TGG 0.283501 7_2:+77005464 None:intergenic
TTGTTGAATCTTACCACAAC+TGG 0.285947 7_2:+77004882 None:intergenic
TGTTGCCTGAAACATTATTA+GGG 0.305592 7_2:+77005649 None:intergenic
ACAACTGGGTAGCGAGTATT+AGG 0.348189 7_2:+77004897 None:intergenic
AACATAGCATCAGCAGCTTC+AGG 0.370983 7_2:-77005684 Msa1078120:CDS
TCCTACTGGTTCAATGGTAT+TGG 0.371489 7_2:-77005037 Msa1078120:CDS
TTCTGTTGTTGCTGTTGATC+AGG 0.388075 7_2:-77005014 Msa1078120:intron
TTAAGTATTATCTGTTTATG+AGG 0.388300 7_2:+77004646 None:intergenic
CCTAACAACAAGTCTAGAAT+TGG 0.406311 7_2:+77005563 None:intergenic
ATCAACAAACAACTATGCTT+TGG 0.412222 7_2:-77004841 Msa1078120:CDS
CATTACTGCTATCAATTTAA+GGG 0.415110 7_2:-77004577 Msa1078120:three_prime_UTR
TTGGTGTTCTTTGTAGTAGT+AGG 0.427451 7_2:+77005582 None:intergenic
ATTCATTTAAATTATAAAGA+GGG 0.435722 7_2:+77004609 None:intergenic
CTATGCTTTGGATGAGATTG+AGG 0.451083 7_2:-77004829 Msa1078120:CDS
CCACACTTTAGATTATATCA+TGG 0.463443 7_2:-77005715 Msa1078120:exon
CAATTCTAGACTTGTTGTTA+GGG 0.467358 7_2:-77005562 Msa1078120:CDS
AAAGAATCCTACTGGTTCAA+TGG 0.482430 7_2:-77005043 Msa1078120:CDS
TGGTGTTCTTTGTAGTAGTA+GGG 0.490325 7_2:+77005583 None:intergenic
TATTCATTTAAATTATAAAG+AGG 0.495397 7_2:+77004608 None:intergenic
TTCTTAGAAAAGAATCCTAC+TGG 0.502179 7_2:-77005051 Msa1078120:CDS
TTCATTTAAATTATAAAGAG+GGG 0.513168 7_2:+77004610 None:intergenic
TGTGTCATCAAGAGGTAGAA+TGG 0.521038 7_2:+77004690 None:intergenic
AAAGACAAGAACAAAGATTG+AGG 0.522834 7_2:+77005761 None:intergenic
CCACCAATTGGTCCCAAAAG+AGG 0.526898 7_2:-77005477 Msa1078120:CDS
ACATAGCATCAGCAGCTTCA+GGG 0.527887 7_2:-77005683 Msa1078120:CDS
AAGACAAGAACAAAGATTGA+GGG 0.540178 7_2:+77005762 None:intergenic
GCTGCAACACCTACTGTTGA+AGG 0.543802 7_2:-77005525 Msa1078120:CDS
ACTTGTTGTTAGGGCATCTG+AGG 0.546313 7_2:-77005553 Msa1078120:CDS
TGGTCCCAAAAGAGGTGCTA+AGG 0.552862 7_2:-77005469 Msa1078120:intron
TGTTGTTAGGGCATCTGAGG+AGG 0.552889 7_2:-77005550 Msa1078120:CDS
GTTGCCTGAAACATTATTAG+GGG 0.583630 7_2:+77005650 None:intergenic
TAATACTCGCTACCCAGTTG+TGG 0.602018 7_2:-77004895 Msa1078120:CDS
GTATATAATGTGTCATCAAG+AGG 0.613761 7_2:+77004682 None:intergenic
GCTGCCTCACCTTCAACAGT+AGG 0.614917 7_2:+77005516 None:intergenic
TGTTGAATCTTACCACAACT+GGG 0.616418 7_2:+77004883 None:intergenic
AACACCTACTGTTGAAGGTG+AGG 0.630753 7_2:-77005520 Msa1078120:CDS
CCATGATATAATCTAAAGTG+TGG 0.637013 7_2:+77005715 None:intergenic
ATTAGCATCTAGAATGAACA+TGG 0.637216 7_2:-77005613 Msa1078120:CDS
AGACAAGAACAAAGATTGAG+GGG 0.639133 7_2:+77005763 None:intergenic
ACCAATACCATTGAACCAGT+AGG 0.681839 7_2:+77005036 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATTCATTTAAATTATAAAGA+GGG + chr7_2:77005766-77005785 None:intergenic 10.0%
!! TATTCATTTAAATTATAAAG+AGG + chr7_2:77005767-77005786 None:intergenic 10.0%
!! ATTCATTTAAATTATAAAGA+GGG + chr7_2:77005766-77005785 None:intergenic 10.0%
!! TATTCATTTAAATTATAAAG+AGG + chr7_2:77005767-77005786 None:intergenic 10.0%
!! AATTAAAGTATACTTTCATA+CGG + chr7_2:77004973-77004992 None:intergenic 15.0%
!!! GTAGTTTTTTTTTAGAAATA+TGG - chr7_2:77004994-77005013 Msa1078120:intron 15.0%
!!! TTTTTTTAGAAATATGGAAT+TGG - chr7_2:77005000-77005019 Msa1078120:intron 15.0%
!!! TTTTTTAGAAATATGGAATT+GGG - chr7_2:77005001-77005020 Msa1078120:intron 15.0%
!!! CTAAGTTTTATTTATTTTGT+TGG - chr7_2:77005278-77005297 Msa1078120:intron 15.0%
!! TTCATTTAAATTATAAAGAG+GGG + chr7_2:77005765-77005784 None:intergenic 15.0%
!! AATTAAAGTATACTTTCATA+CGG + chr7_2:77004973-77004992 None:intergenic 15.0%
!!! GTAGTTTTTTTTTAGAAATA+TGG - chr7_2:77004994-77005013 Msa1078120:intron 15.0%
!!! TTTTTTTAGAAATATGGAAT+TGG - chr7_2:77005000-77005019 Msa1078120:intron 15.0%
!!! TTTTTTAGAAATATGGAATT+GGG - chr7_2:77005001-77005020 Msa1078120:intron 15.0%
!!! CTAAGTTTTATTTATTTTGT+TGG - chr7_2:77005278-77005297 Msa1078120:intron 15.0%
!! TTCATTTAAATTATAAAGAG+GGG + chr7_2:77005765-77005784 None:intergenic 15.0%
!!! GAACTAAATTTTGTTTGTTT+AGG + chr7_2:77004581-77004600 None:intergenic 20.0%
!! TTCTTACTAGAAAAAACTAA+GGG + chr7_2:77005036-77005055 None:intergenic 20.0%
!! ATTCTTACTAGAAAAAACTA+AGG + chr7_2:77005037-77005056 None:intergenic 20.0%
!!! GTTTTTTCTAGTAAGAATTA+TGG - chr7_2:77005039-77005058 Msa1078120:CDS 20.0%
!! ATTATAAACTGATAGTAACT+TGG - chr7_2:77005205-77005224 Msa1078120:intron 20.0%
!!! TGTTTTTCCTACTAAATTAT+TGG + chr7_2:77005246-77005265 None:intergenic 20.0%
!! TTAAGTATTATCTGTTTATG+AGG + chr7_2:77005729-77005748 None:intergenic 20.0%
!!! GAACTAAATTTTGTTTGTTT+AGG + chr7_2:77004581-77004600 None:intergenic 20.0%
!! TTCTTACTAGAAAAAACTAA+GGG + chr7_2:77005036-77005055 None:intergenic 20.0%
!! ATTCTTACTAGAAAAAACTA+AGG + chr7_2:77005037-77005056 None:intergenic 20.0%
!!! GTTTTTTCTAGTAAGAATTA+TGG - chr7_2:77005039-77005058 Msa1078120:CDS 20.0%
!! ATTATAAACTGATAGTAACT+TGG - chr7_2:77005205-77005224 Msa1078120:intron 20.0%
!!! TGTTTTTCCTACTAAATTAT+TGG + chr7_2:77005246-77005265 None:intergenic 20.0%
!! TTAAGTATTATCTGTTTATG+AGG + chr7_2:77005729-77005748 None:intergenic 20.0%
! TTCATACGGCATAATTTATT+TGG + chr7_2:77004959-77004978 None:intergenic 25.0%
! CAATTTCCAAATTACAACTA+GGG + chr7_2:77005065-77005084 None:intergenic 25.0%
! TTGTCAACCAATAATTTAGT+AGG - chr7_2:77005236-77005255 Msa1078120:intron 25.0%
!!! TAATTCAAGTTGCTAGATTA+AGG - chr7_2:77005604-77005623 Msa1078120:CDS 25.0%
! ACATTACTGCTATCAATTTA+AGG - chr7_2:77005794-77005813 Msa1078120:five_prime_UTR 25.0%
! CATTACTGCTATCAATTTAA+GGG - chr7_2:77005795-77005814 Msa1078120:five_prime_UTR 25.0%
! TTCATACGGCATAATTTATT+TGG + chr7_2:77004959-77004978 None:intergenic 25.0%
! CAATTTCCAAATTACAACTA+GGG + chr7_2:77005065-77005084 None:intergenic 25.0%
! TTGTCAACCAATAATTTAGT+AGG - chr7_2:77005236-77005255 Msa1078120:intron 25.0%
!!! TAATTCAAGTTGCTAGATTA+AGG - chr7_2:77005604-77005623 Msa1078120:CDS 25.0%
! ACATTACTGCTATCAATTTA+AGG - chr7_2:77005794-77005813 Msa1078120:five_prime_UTR 25.0%
! CATTACTGCTATCAATTTAA+GGG - chr7_2:77005795-77005814 Msa1078120:five_prime_UTR 25.0%
AAGACAAGAACAAAGATTGA+GGG + chr7_2:77004613-77004632 None:intergenic 30.0%
AAAGACAAGAACAAAGATTG+AGG + chr7_2:77004614-77004633 None:intergenic 30.0%
! CCATGATATAATCTAAAGTG+TGG + chr7_2:77004660-77004679 None:intergenic 30.0%
CCACACTTTAGATTATATCA+TGG - chr7_2:77004657-77004676 Msa1078120:three_prime_UTR 30.0%
TGTTGCCTGAAACATTATTA+GGG + chr7_2:77004726-77004745 None:intergenic 30.0%
! ATTAGCATCTAGAATGAACA+TGG - chr7_2:77004759-77004778 Msa1078120:three_prime_UTR 30.0%
!! CAATTCTAGACTTGTTGTTA+GGG - chr7_2:77004810-77004829 Msa1078120:exon 30.0%
GAAATATGGAATTGGGAAAA+TGG - chr7_2:77005008-77005027 Msa1078120:intron 30.0%
CCAATTTCCAAATTACAACT+AGG + chr7_2:77005066-77005085 None:intergenic 30.0%
CCTAGTTGTAATTTGGAAAT+TGG - chr7_2:77005063-77005082 Msa1078120:intron 30.0%
!!! TTTTGTTGGTTCTACTTAAC+AGG - chr7_2:77005292-77005311 Msa1078120:intron 30.0%
TTCTTAGAAAAGAATCCTAC+TGG - chr7_2:77005321-77005340 Msa1078120:intron 30.0%
!!! CACATGATTGATTTTGAAGT+AGG + chr7_2:77005395-77005414 None:intergenic 30.0%
CTACTTCAAAATCAATCATG+TGG - chr7_2:77005393-77005412 Msa1078120:intron 30.0%
! TTCCTTTTATTGTGTTGTGT+AGG - chr7_2:77005450-77005469 Msa1078120:intron 30.0%
ATCCTACACAACACAATAAA+AGG + chr7_2:77005455-77005474 None:intergenic 30.0%
ATCAACAAACAACTATGCTT+TGG - chr7_2:77005531-77005550 Msa1078120:CDS 30.0%
GTATATAATGTGTCATCAAG+AGG + chr7_2:77005693-77005712 None:intergenic 30.0%
AAGACAAGAACAAAGATTGA+GGG + chr7_2:77004613-77004632 None:intergenic 30.0%
AAAGACAAGAACAAAGATTG+AGG + chr7_2:77004614-77004633 None:intergenic 30.0%
! CCATGATATAATCTAAAGTG+TGG + chr7_2:77004660-77004679 None:intergenic 30.0%
CCACACTTTAGATTATATCA+TGG - chr7_2:77004657-77004676 Msa1078120:three_prime_UTR 30.0%
TGTTGCCTGAAACATTATTA+GGG + chr7_2:77004726-77004745 None:intergenic 30.0%
! ATTAGCATCTAGAATGAACA+TGG - chr7_2:77004759-77004778 Msa1078120:three_prime_UTR 30.0%
!! CAATTCTAGACTTGTTGTTA+GGG - chr7_2:77004810-77004829 Msa1078120:exon 30.0%
GAAATATGGAATTGGGAAAA+TGG - chr7_2:77005008-77005027 Msa1078120:intron 30.0%
CCAATTTCCAAATTACAACT+AGG + chr7_2:77005066-77005085 None:intergenic 30.0%
CCTAGTTGTAATTTGGAAAT+TGG - chr7_2:77005063-77005082 Msa1078120:intron 30.0%
!!! TTTTGTTGGTTCTACTTAAC+AGG - chr7_2:77005292-77005311 Msa1078120:intron 30.0%
TTCTTAGAAAAGAATCCTAC+TGG - chr7_2:77005321-77005340 Msa1078120:intron 30.0%
!!! CACATGATTGATTTTGAAGT+AGG + chr7_2:77005395-77005414 None:intergenic 30.0%
CTACTTCAAAATCAATCATG+TGG - chr7_2:77005393-77005412 Msa1078120:intron 30.0%
! TTCCTTTTATTGTGTTGTGT+AGG - chr7_2:77005450-77005469 Msa1078120:intron 30.0%
ATCCTACACAACACAATAAA+AGG + chr7_2:77005455-77005474 None:intergenic 30.0%
ATCAACAAACAACTATGCTT+TGG - chr7_2:77005531-77005550 Msa1078120:CDS 30.0%
GTATATAATGTGTCATCAAG+AGG + chr7_2:77005693-77005712 None:intergenic 30.0%
AGACAAGAACAAAGATTGAG+GGG + chr7_2:77004612-77004631 None:intergenic 35.0%
TTGTCCCCTAATAATGTTTC+AGG - chr7_2:77004718-77004737 Msa1078120:three_prime_UTR 35.0%
GTTGCCTGAAACATTATTAG+GGG + chr7_2:77004725-77004744 None:intergenic 35.0%
GTGTTGCCTGAAACATTATT+AGG + chr7_2:77004727-77004746 None:intergenic 35.0%
TGGTGTTCTTTGTAGTAGTA+GGG + chr7_2:77004792-77004811 None:intergenic 35.0%
! TTGGTGTTCTTTGTAGTAGT+AGG + chr7_2:77004793-77004812 None:intergenic 35.0%
! CCTAACAACAAGTCTAGAAT+TGG + chr7_2:77004812-77004831 None:intergenic 35.0%
!! CCAATTCTAGACTTGTTGTT+AGG - chr7_2:77004809-77004828 Msa1078120:exon 35.0%
TTATGGCCCTAGTTGTAATT+TGG - chr7_2:77005056-77005075 Msa1078120:CDS 35.0%
! TGGTTCTACTTAACAGGTTA+AGG - chr7_2:77005298-77005317 Msa1078120:intron 35.0%
!! AAAGAATCCTACTGGTTCAA+TGG - chr7_2:77005329-77005348 Msa1078120:intron 35.0%
TGTTGAATCTTACCACAACT+GGG + chr7_2:77005492-77005511 None:intergenic 35.0%
TTGTTGAATCTTACCACAAC+TGG + chr7_2:77005493-77005512 None:intergenic 35.0%
AGACAAGAACAAAGATTGAG+GGG + chr7_2:77004612-77004631 None:intergenic 35.0%
TTGTCCCCTAATAATGTTTC+AGG - chr7_2:77004718-77004737 Msa1078120:three_prime_UTR 35.0%
GTTGCCTGAAACATTATTAG+GGG + chr7_2:77004725-77004744 None:intergenic 35.0%
GTGTTGCCTGAAACATTATT+AGG + chr7_2:77004727-77004746 None:intergenic 35.0%
TGGTGTTCTTTGTAGTAGTA+GGG + chr7_2:77004792-77004811 None:intergenic 35.0%
! TTGGTGTTCTTTGTAGTAGT+AGG + chr7_2:77004793-77004812 None:intergenic 35.0%
! CCTAACAACAAGTCTAGAAT+TGG + chr7_2:77004812-77004831 None:intergenic 35.0%
!! CCAATTCTAGACTTGTTGTT+AGG - chr7_2:77004809-77004828 Msa1078120:exon 35.0%
TTATGGCCCTAGTTGTAATT+TGG - chr7_2:77005056-77005075 Msa1078120:CDS 35.0%
! TGGTTCTACTTAACAGGTTA+AGG - chr7_2:77005298-77005317 Msa1078120:intron 35.0%
!! AAAGAATCCTACTGGTTCAA+TGG - chr7_2:77005329-77005348 Msa1078120:intron 35.0%
TGTTGAATCTTACCACAACT+GGG + chr7_2:77005492-77005511 None:intergenic 35.0%
TTGTTGAATCTTACCACAAC+TGG + chr7_2:77005493-77005512 None:intergenic 35.0%
!! TCCTACTGGTTCAATGGTAT+TGG - chr7_2:77005335-77005354 Msa1078120:intron 40.0%
ACCAATACCATTGAACCAGT+AGG + chr7_2:77005339-77005358 None:intergenic 40.0%
! TTCTGTTGTTGCTGTTGATC+AGG - chr7_2:77005358-77005377 Msa1078120:intron 40.0%
! CTATGCTTTGGATGAGATTG+AGG - chr7_2:77005543-77005562 Msa1078120:CDS 40.0%
TGTGTCATCAAGAGGTAGAA+TGG + chr7_2:77005685-77005704 None:intergenic 40.0%
!! TCCTACTGGTTCAATGGTAT+TGG - chr7_2:77005335-77005354 Msa1078120:intron 40.0%
ACCAATACCATTGAACCAGT+AGG + chr7_2:77005339-77005358 None:intergenic 40.0%
! TTCTGTTGTTGCTGTTGATC+AGG - chr7_2:77005358-77005377 Msa1078120:intron 40.0%
! CTATGCTTTGGATGAGATTG+AGG - chr7_2:77005543-77005562 Msa1078120:CDS 40.0%
TGTGTCATCAAGAGGTAGAA+TGG + chr7_2:77005685-77005704 None:intergenic 40.0%
AACATAGCATCAGCAGCTTC+AGG - chr7_2:77004688-77004707 Msa1078120:three_prime_UTR 45.0%
ACATAGCATCAGCAGCTTCA+GGG - chr7_2:77004689-77004708 Msa1078120:three_prime_UTR 45.0%
!! ACTTGTTGTTAGGGCATCTG+AGG - chr7_2:77004819-77004838 Msa1078120:CDS 45.0%
AACACCTACTGTTGAAGGTG+AGG - chr7_2:77004852-77004871 Msa1078120:CDS 45.0%
! ATTGGTGGGGGCTTGATTTT+TGG + chr7_2:77004883-77004902 None:intergenic 45.0%
AAAATCAAGCCCCCACCAAT+TGG - chr7_2:77004883-77004902 Msa1078120:CDS 45.0%
!!! TCTTTTGGGACCAATTGGTG+GGG + chr7_2:77004896-77004915 None:intergenic 45.0%
!!! CTCTTTTGGGACCAATTGGT+GGG + chr7_2:77004897-77004916 None:intergenic 45.0%
! CACACCTTAGCACCTCTTTT+GGG + chr7_2:77004910-77004929 None:intergenic 45.0%
! ACACACCTTAGCACCTCTTT+TGG + chr7_2:77004911-77004930 None:intergenic 45.0%
ACAACTGGGTAGCGAGTATT+AGG + chr7_2:77005478-77005497 None:intergenic 45.0%
TAATACTCGCTACCCAGTTG+TGG - chr7_2:77005477-77005496 Msa1078120:CDS 45.0%
AACATAGCATCAGCAGCTTC+AGG - chr7_2:77004688-77004707 Msa1078120:three_prime_UTR 45.0%
ACATAGCATCAGCAGCTTCA+GGG - chr7_2:77004689-77004708 Msa1078120:three_prime_UTR 45.0%
!! ACTTGTTGTTAGGGCATCTG+AGG - chr7_2:77004819-77004838 Msa1078120:CDS 45.0%
AACACCTACTGTTGAAGGTG+AGG - chr7_2:77004852-77004871 Msa1078120:CDS 45.0%
! ATTGGTGGGGGCTTGATTTT+TGG + chr7_2:77004883-77004902 None:intergenic 45.0%
AAAATCAAGCCCCCACCAAT+TGG - chr7_2:77004883-77004902 Msa1078120:CDS 45.0%
!!! TCTTTTGGGACCAATTGGTG+GGG + chr7_2:77004896-77004915 None:intergenic 45.0%
!!! CTCTTTTGGGACCAATTGGT+GGG + chr7_2:77004897-77004916 None:intergenic 45.0%
! CACACCTTAGCACCTCTTTT+GGG + chr7_2:77004910-77004929 None:intergenic 45.0%
! ACACACCTTAGCACCTCTTT+TGG + chr7_2:77004911-77004930 None:intergenic 45.0%
ACAACTGGGTAGCGAGTATT+AGG + chr7_2:77005478-77005497 None:intergenic 45.0%
TAATACTCGCTACCCAGTTG+TGG - chr7_2:77005477-77005496 Msa1078120:CDS 45.0%
!! ATTATCATATAAATTAAAAA+GGG + chr7_2:77005108-77005127 None:intergenic 5.0%
!! AATTATCATATAAATTAAAA+AGG + chr7_2:77005109-77005128 None:intergenic 5.0%
!! ATTATCATATAAATTAAAAA+GGG + chr7_2:77005108-77005127 None:intergenic 5.0%
!! AATTATCATATAAATTAAAA+AGG + chr7_2:77005109-77005128 None:intergenic 5.0%
! TGTTGTTAGGGCATCTGAGG+AGG - chr7_2:77004822-77004841 Msa1078120:CDS 50.0%
GCTGCAACACCTACTGTTGA+AGG - chr7_2:77004847-77004866 Msa1078120:CDS 50.0%
!!! CTTTTGGGACCAATTGGTGG+GGG + chr7_2:77004895-77004914 None:intergenic 50.0%
!!! CCTCTTTTGGGACCAATTGG+TGG + chr7_2:77004898-77004917 None:intergenic 50.0%
CCACCAATTGGTCCCAAAAG+AGG - chr7_2:77004895-77004914 Msa1078120:CDS 50.0%
!!! GCACCTCTTTTGGGACCAAT+TGG + chr7_2:77004901-77004920 None:intergenic 50.0%
!! TGGTCCCAAAAGAGGTGCTA+AGG - chr7_2:77004903-77004922 Msa1078120:CDS 50.0%
! TGTTGTTAGGGCATCTGAGG+AGG - chr7_2:77004822-77004841 Msa1078120:CDS 50.0%
GCTGCAACACCTACTGTTGA+AGG - chr7_2:77004847-77004866 Msa1078120:CDS 50.0%
!!! CTTTTGGGACCAATTGGTGG+GGG + chr7_2:77004895-77004914 None:intergenic 50.0%
!!! CCTCTTTTGGGACCAATTGG+TGG + chr7_2:77004898-77004917 None:intergenic 50.0%
CCACCAATTGGTCCCAAAAG+AGG - chr7_2:77004895-77004914 Msa1078120:CDS 50.0%
!!! GCACCTCTTTTGGGACCAAT+TGG + chr7_2:77004901-77004920 None:intergenic 50.0%
!! TGGTCCCAAAAGAGGTGCTA+AGG - chr7_2:77004903-77004922 Msa1078120:CDS 50.0%
GCTGCCTCACCTTCAACAGT+AGG + chr7_2:77004859-77004878 None:intergenic 55.0%
GCTGCCTCACCTTCAACAGT+AGG + chr7_2:77004859-77004878 None:intergenic 55.0%
Chromosome Type Strat End Strand Name
chr7_2 gene 77004566 77005828 77004566 ID=Msa1078120;Name=Msa1078120
chr7_2 mRNA 77004566 77005828 77004566 ID=Msa1078120-mRNA-1;Parent=Msa1078120;Name=Msa1078120-mRNA-1;_AED=0.04;_eAED=0.04;_QI=110|1|1|1|1|1|3|252|139
chr7_2 exon 77004566 77004922 77004566 ID=Msa1078120-mRNA-1:exon:18831;Parent=Msa1078120-mRNA-1
chr7_2 exon 77005015 77005080 77005015 ID=Msa1078120-mRNA-1:exon:18830;Parent=Msa1078120-mRNA-1
chr7_2 exon 77005470 77005828 77005470 ID=Msa1078120-mRNA-1:exon:18829;Parent=Msa1078120-mRNA-1
chr7_2 five_prime_UTR 77005719 77005828 77005719 ID=Msa1078120-mRNA-1:five_prime_utr;Parent=Msa1078120-mRNA-1
chr7_2 CDS 77005470 77005718 77005470 ID=Msa1078120-mRNA-1:cds;Parent=Msa1078120-mRNA-1
chr7_2 CDS 77005015 77005080 77005015 ID=Msa1078120-mRNA-1:cds;Parent=Msa1078120-mRNA-1
chr7_2 CDS 77004818 77004922 77004818 ID=Msa1078120-mRNA-1:cds;Parent=Msa1078120-mRNA-1
chr7_2 three_prime_UTR 77004566 77004817 77004566 ID=Msa1078120-mRNA-1:three_prime_utr;Parent=Msa1078120-mRNA-1
Gene Sequence

>Msa1078120

ATGGCTAGTTGCAACATAGCATCAGCAGCTTCAGGGTTTGTGTTGTCCCCTAATAATGTTTCAGGCAACACAAACACTAATTTATTAGCATCTAGAATGAACATGGTGATGTACCCTACTACTACAAAGAACACCAATTCTAGACTTGTTGTTAGGGCATCTGAGGAGGCTGCTGCAACACCTACTGTTGAAGGTGAGGCAGCTCCAAAAATCAAGCCCCCACCAATTGGTCCCAAAAGAGGTGCTAAGGTTAAGGTTCTTAGAAAAGAATCCTACTGGTTCAATGGTATTGGTTCTGTTGTTGCTGTTGATCAGGATCCTAATACTCGCTACCCAGTTGTGGTAAGATTCAACAAAGTTAACTATGCAAATGTATCAACAAACAACTATGCTTTGGATGAGATTGAGGAAGTCAAATGA

Protein sequence

>Msa1078120

MASCNIASAASGFVLSPNNVSGNTNTNLLASRMNMVMYPTTTKNTNSRLVVRASEEAAATPTVEGEAAPKIKPPPIGPKRGAKVKVLRKESYWFNGIGSVVAVDQDPNTRYPVVVRFNKVNYANVSTNNYALDEIEEVK*