AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1215220


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1215220 MtrunA17_Chr4g0064601 98.630 292 4 0 1 292 1 292 0.0 592
Msa1215220 MtrunA17_Chr4g0034391 35.185 270 140 9 42 289 70 326 1.76e-32 126
Msa1215220 MtrunA17_Chr4g0009941 27.715 267 147 11 56 292 4 254 3.16e-13 68.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1215220 AT2G34460.1 72.963 270 65 3 22 289 14 277 2.17e-141 399
Msa1215220 AT3G18890.1 33.453 278 149 11 41 292 62 329 3.75e-30 120
Msa1215220 AT2G37660.1 30.952 168 99 7 135 292 164 324 1.36e-12 67.4
Msa1215220 AT4G31530.1 31.746 315 158 17 8 286 25 318 5.66e-11 62.8

Find 97 sgRNAs with CRISPR-Local

Find 177 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATTATGCAGGTTGACAATTT+TGG 0.186826 8_1:-76499013 Msa1215220:intron
TGATATCACGATCCATATTT+AGG 0.198059 8_1:+76498179 None:intergenic
TGACGTGTTAAACCTAAATA+TGG 0.250892 8_1:-76498191 Msa1215220:three_prime_UTR
AGCGGCTCCATTGACTAAAA+TGG 0.269340 8_1:+76498928 None:intergenic
TCACAGTGGAAGAGCTTAAA+TGG 0.290715 8_1:-76500671 Msa1215220:exon
CACCTTAGTGGCAAAATTAC+AGG 0.310873 8_1:-76498855 Msa1215220:CDS
CCACAGGCTTTCGGCCAGGC+TGG 0.324155 8_1:-76499812 Msa1215220:CDS
AGCAACTTGATCTCTGGATA+TGG 0.327489 8_1:+76498606 None:intergenic
AATTCTATACTAACCTTCAA+TGG 0.346061 8_1:+76498274 None:intergenic
GTTGAGGAAGGGAAGAGATT+TGG 0.346298 8_1:+76500564 None:intergenic
CGCGCATACCATGATCTCTT+TGG 0.346559 8_1:-76498502 Msa1215220:CDS
TAGTTTGTGCCACAGGCTTT+CGG 0.360254 8_1:-76499821 Msa1215220:CDS
CAGATATTATCGCTGAACTA+TGG 0.361240 8_1:+76498477 None:intergenic
CAGAGTTGTAGCGCCTTGTT+TGG 0.372065 8_1:-76500724 Msa1215220:five_prime_UTR
GAAAATCATATCAGGAAATC+TGG 0.374335 8_1:-76498830 Msa1215220:CDS
TATTCTATCTTCCCCATTGA+AGG 0.378846 8_1:-76498287 Msa1215220:three_prime_UTR
GATAAGCTAGCTGAAGCAAT+TGG 0.379075 8_1:-76499861 Msa1215220:CDS
TAGCGCCTTGTTTGGTAACC+TGG 0.381119 8_1:-76500716 Msa1215220:five_prime_UTR
TGGATATGGAACCTTCATAA+AGG 0.390225 8_1:+76498620 None:intergenic
TACAGGCAGAAAATCATATC+AGG 0.402158 8_1:-76498838 Msa1215220:CDS
ATTCTATACTAACCTTCAAT+GGG 0.408965 8_1:+76498275 None:intergenic
TCCTACTGGAAATGTTGTTA+TGG 0.413074 8_1:-76498762 Msa1215220:CDS
CACAGGCTTTCGGCCAGGCT+GGG 0.417213 8_1:-76499811 Msa1215220:CDS
GATATTTACTCACATTACTT+TGG 0.417773 8_1:+76498337 None:intergenic
ATAAGCTAGCTGAAGCAATT+GGG 0.423531 8_1:-76499860 Msa1215220:CDS
AGGAAGAGGGAGCGGTGAAT+TGG 0.428132 8_1:+76500593 None:intergenic
AGATTTGGTTCTGAAGGAAG+AGG 0.436139 8_1:+76500579 None:intergenic
GTAGGGTTTCTTGCAATAAG+AGG 0.436214 8_1:+76500643 None:intergenic
TGTGCCACAGGCTTTCGGCC+AGG 0.448901 8_1:-76499816 Msa1215220:CDS
AGCAAGAGATGATGGCATAA+TGG 0.456815 8_1:+76498230 None:intergenic
TTAGTCAATGGAGCCGCTAT+GGG 0.459534 8_1:-76498923 Msa1215220:CDS
TTTAGTCAATGGAGCCGCTA+TGG 0.462769 8_1:-76498924 Msa1215220:CDS
AAACTTACAAATTGAAGAGA+TGG 0.465083 8_1:+76500270 None:intergenic
TTGGTTGCAGATTAGCAAAT+CGG 0.469195 8_1:-76498444 Msa1215220:three_prime_UTR
GCTGGAGCTACTGGTAGTAC+TGG 0.469225 8_1:-76500387 Msa1215220:CDS
GATGGGAAAGTGTGGAATGT+AGG 0.469287 8_1:+76500625 None:intergenic
TACTTCAGCAACTTGATCTC+TGG 0.470399 8_1:+76498600 None:intergenic
CAGCGATAATATCTGAGATT+CGG 0.474779 8_1:-76498469 Msa1215220:exon
GGGAAGAGATTTGGTTCTGA+AGG 0.477299 8_1:+76500573 None:intergenic
GATAACATGAAAGGTATGCT+TGG 0.478300 8_1:+76498315 None:intergenic
GGATTTGCTTGCCCCATGGA+AGG 0.484251 8_1:-76499790 Msa1215220:intron
AGATCATGGTATGCGCGCTT+AGG 0.484675 8_1:+76498508 None:intergenic
ATGGGAAAGTGTGGAATGTA+GGG 0.487437 8_1:+76500626 None:intergenic
GGATATGGAACCTTCATAAA+GGG 0.488764 8_1:+76498621 None:intergenic
TAAAGCTGGGGTTAGAGACT+TGG 0.490510 8_1:-76500322 Msa1215220:CDS
CTATGGAACCAAAGAGATCA+TGG 0.496271 8_1:+76498494 None:intergenic
GAAGCAGTAGTTTGTGCCAC+AGG 0.496380 8_1:-76499828 Msa1215220:CDS
GAGCGGTGAATTGGTGAGTG+TGG 0.497827 8_1:+76500602 None:intergenic
TATCAGGACACCCTTTATGA+AGG 0.503153 8_1:-76498631 Msa1215220:intron
TGAATTGGTGAGTGTGGGAT+GGG 0.506487 8_1:+76500608 None:intergenic
GCTGGGATTTGCTTGCCCCA+TGG 0.510222 8_1:-76499794 Msa1215220:CDS
GTGGAACAGTTACTTGCAAA+GGG 0.511281 8_1:-76500354 Msa1215220:CDS
TAGAAGAAAGCAAGAGATGA+TGG 0.513897 8_1:+76498222 None:intergenic
AAAATTAACAAACCTTCCAT+GGG 0.515977 8_1:+76499778 None:intergenic
AATTTCCAGGTTACCAAACA+AGG 0.518947 8_1:+76500711 None:intergenic
CGTGGAACAGTTACTTGCAA+AGG 0.522560 8_1:-76500355 Msa1215220:CDS
GTGAATTGGTGAGTGTGGGA+TGG 0.525508 8_1:+76500607 None:intergenic
CTTTCCTGCATGCTTCAACA+AGG 0.527070 8_1:+76498981 None:intergenic
ACAACTTTGTAAGATGCCTC+AGG 0.530129 8_1:+76498556 None:intergenic
TAAACCTTGTTGAAGCATGC+AGG 0.536699 8_1:-76498985 Msa1215220:CDS
AGCGGTGAATTGGTGAGTGT+GGG 0.541130 8_1:+76500603 None:intergenic
TAATATCTGAGATTCGGACT+TGG 0.548694 8_1:-76498463 Msa1215220:three_prime_UTR
GGGGCAAGCAAATCCCAGCC+TGG 0.552735 8_1:+76499798 None:intergenic
AACTTACAAATTGAAGAGAT+GGG 0.553213 8_1:+76500271 None:intergenic
TACCTTTGCGAAGTTGAGGA+AGG 0.555784 8_1:+76500552 None:intergenic
CTGGAAATTACAAGAAAACT+CGG 0.557430 8_1:-76500697 Msa1215220:five_prime_UTR
GAGTGTGGGATGGGAAAGTG+TGG 0.558741 8_1:+76500617 None:intergenic
GTGTTACCTTTGCGAAGTTG+AGG 0.563021 8_1:+76500548 None:intergenic
CTGGAGCTACTGGTAGTACT+GGG 0.565656 8_1:-76500386 Msa1215220:CDS
TGAGGCATCTTACAAAGTTG+TGG 0.567286 8_1:-76498554 Msa1215220:CDS
TATGGGGCAGCTACTCAATC+CGG 0.569169 8_1:-76498906 Msa1215220:CDS
AATAGAAATGATAACATGAA+AGG 0.570329 8_1:+76498306 None:intergenic
GGTTCTGAAGGAAGAGGGAG+CGG 0.573272 8_1:+76500585 None:intergenic
GATTTGGTTCTGAAGGAAGA+GGG 0.577302 8_1:+76500580 None:intergenic
ACCTTTGCGAAGTTGAGGAA+GGG 0.578834 8_1:+76500553 None:intergenic
TGAAGTAGCTGTGGAATCGT+TGG 0.581550 8_1:-76498584 Msa1215220:CDS
CCAGCCTGGCCGAAAGCCTG+TGG 0.586862 8_1:+76499812 None:intergenic
ATAACAACATTTCCAGTAGG+AGG 0.590217 8_1:+76498764 None:intergenic
ACGTTGAGAAAGATGTAAGC+CGG 0.592173 8_1:+76498887 None:intergenic
TCCCTTCCTCAACTTCGCAA+AGG 0.592473 8_1:-76500554 Msa1215220:intron
TAAGCTAGCTGAAGCAATTG+GGG 0.593302 8_1:-76499859 Msa1215220:CDS
TGAAATCACTCAACAAGCAG+TGG 0.599254 8_1:-76500445 Msa1215220:CDS
TCAAGTTGCTGAAGTAGCTG+TGG 0.611865 8_1:-76498593 Msa1215220:CDS
CACGTTGGCAAGTGAATACG+TGG 0.616116 8_1:-76500747 None:intergenic
GTTAAAGTTGATGTCACAGA+GGG 0.630073 8_1:-76499888 Msa1215220:CDS
ATTGAGTAGCTGCCCCATAG+CGG 0.638328 8_1:+76498910 None:intergenic
AATTACACAATCATAAGACC+TGG 0.643894 8_1:-76498803 Msa1215220:CDS
TAGTCAATGGAGCCGCTATG+GGG 0.647798 8_1:-76498922 Msa1215220:CDS
TACACAATCATAAGACCTGG+AGG 0.652611 8_1:-76498800 Msa1215220:CDS
TCCATAACAACATTTCCAGT+AGG 0.656385 8_1:+76498761 None:intergenic
TTCTATACTAACCTTCAATG+GGG 0.673477 8_1:+76498276 None:intergenic
GGAATCGTTGGCTTATCCTG+AGG 0.676950 8_1:-76498572 Msa1215220:CDS
TAGTACTGGGAAAAGAATCG+TGG 0.683015 8_1:-76500373 Msa1215220:CDS
ACACAATCATAAGACCTGGA+GGG 0.693729 8_1:-76498799 Msa1215220:CDS
AAATGTTGTTATGGAGCCAG+AGG 0.716025 8_1:-76498753 Msa1215220:intron
AAATTAACAAACCTTCCATG+GGG 0.740909 8_1:+76499779 None:intergenic
GGTTAAAGTTGATGTCACAG+AGG 0.749642 8_1:-76499889 Msa1215220:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATAAAACTTAAAATTAAGT+CGG - chr8_1:76498812-76498831 Msa1215220:CDS 10.0%
!!! TAATTATTTTTATGTTAGTA+TGG - chr8_1:76499218-76499237 Msa1215220:intron 10.0%
!! TATAACAAAATATTGTATAC+TGG + chr8_1:76499874-76499893 None:intergenic 15.0%
!!! ACAATATTTTGTTATAACAA+AGG - chr8_1:76499878-76499897 Msa1215220:CDS 15.0%
!!! CAATATTTTGTTATAACAAA+GGG - chr8_1:76499879-76499898 Msa1215220:CDS 15.0%
!!! AATTTAATTTTCTATGTATC+AGG - chr8_1:76500272-76500291 Msa1215220:intron 15.0%
!!! TTTTCTTTGTTTTTGTTAGA+TGG - chr8_1:76498444-76498463 Msa1215220:three_prime_UTR 20.0%
!!! ATAGTCCAATTTAAGATTAT+TGG - chr8_1:76498699-76498718 Msa1215220:intron 20.0%
!!! TAGTCCAATTTAAGATTATT+GGG - chr8_1:76498700-76498719 Msa1215220:intron 20.0%
!! TTTAAATCTAAACCAAGTTA+AGG + chr8_1:76499282-76499301 None:intergenic 20.0%
!!! TATAATCTGATGCTATTTAA+AGG + chr8_1:76499765-76499784 None:intergenic 20.0%
!!! CTCAATTTTTTATATGTTTG+TGG - chr8_1:76500235-76500254 Msa1215220:intron 20.0%
!! AATAGAAATGATAACATGAA+AGG + chr8_1:76500616-76500635 None:intergenic 20.0%
! AAAAAATGCTAGTATTAACG+CGG + chr8_1:76498425-76498444 None:intergenic 25.0%
! AACTTACAAATTGAAGAGAT+GGG + chr8_1:76498651-76498670 None:intergenic 25.0%
! AAACTTACAAATTGAAGAGA+TGG + chr8_1:76498652-76498671 None:intergenic 25.0%
!! GGACTATTTTGCAATATAAT+GGG + chr8_1:76498686-76498705 None:intergenic 25.0%
!! TGGACTATTTTGCAATATAA+TGG + chr8_1:76498687-76498706 None:intergenic 25.0%
! TCAAATAAACCAATTCAAAC+AGG - chr8_1:76498947-76498966 Msa1215220:CDS 25.0%
! CAAATAAACCAATTCAAACA+GGG - chr8_1:76498948-76498967 Msa1215220:CDS 25.0%
! AAAATTAACAAACCTTCCAT+GGG + chr8_1:76499144-76499163 None:intergenic 25.0%
! AAAAATTAACAAACCTTCCA+TGG + chr8_1:76499145-76499164 None:intergenic 25.0%
! ATGGTAGTAGAATATTAGAA+TGG - chr8_1:76499175-76499194 Msa1215220:intron 25.0%
!!! AAAATGATCTCTAGAACTTA+CGG - chr8_1:76499307-76499326 Msa1215220:intron 25.0%
! ACTGTAACACTAATATAATC+AGG - chr8_1:76499491-76499510 Msa1215220:intron 25.0%
! TTTAGATTCTTCACTAGTAA+AGG - chr8_1:76499695-76499714 Msa1215220:intron 25.0%
! TTAGATTCTTCACTAGTAAA+GGG - chr8_1:76499696-76499715 Msa1215220:intron 25.0%
!!! ACAATTGTGTTTTGATTCAT+TGG + chr8_1:76499819-76499838 None:intergenic 25.0%
! ATGAATCAAAACACAATTGT+TGG - chr8_1:76499819-76499838 Msa1215220:CDS 25.0%
!!! ATAAGTTCCATTTTAGTCAA+TGG - chr8_1:76499984-76500003 Msa1215220:intron 25.0%
! GATATTTACTCACATTACTT+TGG + chr8_1:76500585-76500604 None:intergenic 25.0%
! ATTCTATACTAACCTTCAAT+GGG + chr8_1:76500647-76500666 None:intergenic 25.0%
! AATTCTATACTAACCTTCAA+TGG + chr8_1:76500648-76500667 None:intergenic 25.0%
CTGGAAATTACAAGAAAACT+CGG - chr8_1:76498222-76498241 Msa1215220:three_prime_UTR 30.0%
!!! CTTTGTTTTTGTTAGATGGA+AGG - chr8_1:76498448-76498467 Msa1215220:three_prime_UTR 30.0%
! AAGAAGAAAGTTTTTGTTGC+TGG - chr8_1:76498514-76498533 Msa1215220:CDS 30.0%
CAGACCCAATAATCTTAAAT+TGG + chr8_1:76498707-76498726 None:intergenic 30.0%
TATAAACAATTTGCCCTGTT+TGG - chr8_1:76498727-76498746 Msa1215220:intron 30.0%
! TTAAGTTGTTGATCCAAACA+GGG + chr8_1:76498743-76498762 None:intergenic 30.0%
! ATTAAGTTGTTGATCCAAAC+AGG + chr8_1:76498744-76498763 None:intergenic 30.0%
GAATGACATGATGTGTAATT+TGG - chr8_1:76498983-76499002 Msa1215220:CDS 30.0%
AAATTAACAAACCTTCCATG+GGG + chr8_1:76499143-76499162 None:intergenic 30.0%
TAGAACTTACGGTGATTATT+GGG - chr8_1:76499318-76499337 Msa1215220:intron 30.0%
GTACAAGTTCTGTAAATGTT+TGG - chr8_1:76499376-76499395 Msa1215220:intron 30.0%
!!! GTGTTTGATACTTTTGAAGT+AGG - chr8_1:76499398-76499417 Msa1215220:intron 30.0%
AGTAGGCTACATTATATACA+TGG - chr8_1:76499415-76499434 Msa1215220:intron 30.0%
ACTCTATCTAATATCCAGAA+TGG + chr8_1:76499581-76499600 None:intergenic 30.0%
ACTAGTGAAGAATCTAAACT+TGG + chr8_1:76499693-76499712 None:intergenic 30.0%
ATCAAAACACAATTGTTGGT+TGG - chr8_1:76499823-76499842 Msa1215220:CDS 30.0%
! TCAAAACACAATTGTTGGTT+GGG - chr8_1:76499824-76499843 Msa1215220:CDS 30.0%
AACAAAGGGATATATTATGC+AGG - chr8_1:76499893-76499912 Msa1215220:intron 30.0%
!! ATTATGCAGGTTGACAATTT+TGG - chr8_1:76499906-76499925 Msa1215220:intron 30.0%
! TACATCTTTCTCAACGTTTT+CGG - chr8_1:76500038-76500057 Msa1215220:intron 30.0%
GAAAATCATATCAGGAAATC+TGG - chr8_1:76500089-76500108 Msa1215220:intron 30.0%
AATTACACAATCATAAGACC+TGG - chr8_1:76500116-76500135 Msa1215220:intron 30.0%
CCAAAAATCCAAGAAAAACA+AGG + chr8_1:76500504-76500523 None:intergenic 30.0%
!!! CCTTGTTTTTCTTGGATTTT+TGG - chr8_1:76500501-76500520 Msa1215220:intron 30.0%
TTCTATACTAACCTTCAATG+GGG + chr8_1:76500646-76500665 None:intergenic 30.0%
TGACGTGTTAAACCTAAATA+TGG - chr8_1:76500728-76500747 Msa1215220:five_prime_UTR 30.0%
TGATATCACGATCCATATTT+AGG + chr8_1:76500743-76500762 None:intergenic 30.0%
AATTTCCAGGTTACCAAACA+AGG + chr8_1:76498211-76498230 None:intergenic 35.0%
! CGAGTTTTCTTGTAATTTCC+AGG + chr8_1:76498224-76498243 None:intergenic 35.0%
AAGCTATCATGTAGAGCTTA+TGG - chr8_1:76498845-76498864 Msa1215220:CDS 35.0%
ATATGTGTGAGTTCATATGC+AGG - chr8_1:76499009-76499028 Msa1215220:intron 35.0%
!! GTTAAAGTTGATGTCACAGA+GGG - chr8_1:76499031-76499050 Msa1215220:intron 35.0%
ATAAGCTAGCTGAAGCAATT+GGG - chr8_1:76499059-76499078 Msa1215220:intron 35.0%
CTAGAACTTACGGTGATTAT+TGG - chr8_1:76499317-76499336 Msa1215220:intron 35.0%
! TGGGTGCAACATATTTTCAT+TGG - chr8_1:76499337-76499356 Msa1215220:intron 35.0%
GGTTACTAAAACAAGAACCA+CGG + chr8_1:76499554-76499573 None:intergenic 35.0%
CTGGATATTAGATAGAGTTG+AGG - chr8_1:76499583-76499602 Msa1215220:intron 35.0%
TACAGGCAGAAAATCATATC+AGG - chr8_1:76500081-76500100 Msa1215220:intron 35.0%
ATAACAACATTTCCAGTAGG+AGG + chr8_1:76500158-76500177 None:intergenic 35.0%
TCCTACTGGAAATGTTGTTA+TGG - chr8_1:76500157-76500176 Msa1215220:intron 35.0%
TCCATAACAACATTTCCAGT+AGG + chr8_1:76500161-76500180 None:intergenic 35.0%
GAAATTTAAGCAAACACCTC+TGG + chr8_1:76500185-76500204 None:intergenic 35.0%
GGATATGGAACCTTCATAAA+GGG + chr8_1:76500301-76500320 None:intergenic 35.0%
TGGATATGGAACCTTCATAA+AGG + chr8_1:76500302-76500321 None:intergenic 35.0%
CAGATATTATCGCTGAACTA+TGG + chr8_1:76500445-76500464 None:intergenic 35.0%
! CAGCGATAATATCTGAGATT+CGG - chr8_1:76500450-76500469 Msa1215220:CDS 35.0%
! TAATATCTGAGATTCGGACT+TGG - chr8_1:76500456-76500475 Msa1215220:CDS 35.0%
TTGGTTGCAGATTAGCAAAT+CGG - chr8_1:76500475-76500494 Msa1215220:intron 35.0%
!!! ATCGGTTTCCTTGTTTTTCT+TGG - chr8_1:76500493-76500512 Msa1215220:intron 35.0%
! GATAACATGAAAGGTATGCT+TGG + chr8_1:76500607-76500626 None:intergenic 35.0%
TATTCTATCTTCCCCATTGA+AGG - chr8_1:76500632-76500651 Msa1215220:CDS 35.0%
TAGAAGAAAGCAAGAGATGA+TGG + chr8_1:76500700-76500719 None:intergenic 35.0%
! AGAAAACTCGGTTTTCACAG+TGG - chr8_1:76498234-76498253 Msa1215220:three_prime_UTR 40.0%
TCACAGTGGAAGAGCTTAAA+TGG - chr8_1:76498248-76498267 Msa1215220:three_prime_UTR 40.0%
GTAGGGTTTCTTGCAATAAG+AGG + chr8_1:76498279-76498298 None:intergenic 40.0%
! ATGGGAAAGTGTGGAATGTA+GGG + chr8_1:76498296-76498315 None:intergenic 40.0%
!! GATTTGGTTCTGAAGGAAGA+GGG + chr8_1:76498342-76498361 None:intergenic 40.0%
!! AGATTTGGTTCTGAAGGAAG+AGG + chr8_1:76498343-76498362 None:intergenic 40.0%
TGAAATCACTCAACAAGCAG+TGG - chr8_1:76498474-76498493 Msa1215220:exon 40.0%
! TAGTACTGGGAAAAGAATCG+TGG - chr8_1:76498546-76498565 Msa1215220:CDS 40.0%
GTGGAACAGTTACTTGCAAA+GGG - chr8_1:76498565-76498584 Msa1215220:CDS 40.0%
!!! AAGGGTTTTGCTGTTAAAGC+TGG - chr8_1:76498583-76498602 Msa1215220:CDS 40.0%
!!! AGGGTTTTGCTGTTAAAGCT+GGG - chr8_1:76498584-76498603 Msa1215220:CDS 40.0%
!! CAAGTACTTCTGAGACTCTA+TGG + chr8_1:76498912-76498931 None:intergenic 40.0%
!! GGTTAAAGTTGATGTCACAG+AGG - chr8_1:76499030-76499049 Msa1215220:intron 40.0%
GATAAGCTAGCTGAAGCAAT+TGG - chr8_1:76499058-76499077 Msa1215220:intron 40.0%
TAAGCTAGCTGAAGCAATTG+GGG - chr8_1:76499060-76499079 Msa1215220:intron 40.0%
! GTTAATGAGTGGCCTTAACT+TGG - chr8_1:76499267-76499286 Msa1215220:intron 40.0%
! TTGATTCCACATTTTCCCTC+CGG - chr8_1:76499454-76499473 Msa1215220:intron 40.0%
ACAGTTTAACACGCAGAAAC+CGG + chr8_1:76499476-76499495 None:intergenic 40.0%
TTTAGTAACCAACGCCATTC+TGG - chr8_1:76499564-76499583 Msa1215220:intron 40.0%
TCTAATATCCAGAATGGCGT+TGG + chr8_1:76499575-76499594 None:intergenic 40.0%
TAAACCTTGTTGAAGCATGC+AGG - chr8_1:76499934-76499953 Msa1215220:intron 40.0%
ACGTTGAGAAAGATGTAAGC+CGG + chr8_1:76500035-76500054 None:intergenic 40.0%
CACCTTAGTGGCAAAATTAC+AGG - chr8_1:76500064-76500083 Msa1215220:intron 40.0%
! TGCCTGTAATTTTGCCACTA+AGG + chr8_1:76500069-76500088 None:intergenic 40.0%
TACACAATCATAAGACCTGG+AGG - chr8_1:76500119-76500138 Msa1215220:intron 40.0%
ACACAATCATAAGACCTGGA+GGG - chr8_1:76500120-76500139 Msa1215220:intron 40.0%
TTGAAAAACGATCCTCCTAC+TGG - chr8_1:76500143-76500162 Msa1215220:intron 40.0%
AAATGTTGTTATGGAGCCAG+AGG - chr8_1:76500166-76500185 Msa1215220:intron 40.0%
TATCAGGACACCCTTTATGA+AGG - chr8_1:76500288-76500307 Msa1215220:CDS 40.0%
AGCAACTTGATCTCTGGATA+TGG + chr8_1:76500316-76500335 None:intergenic 40.0%
TACTTCAGCAACTTGATCTC+TGG + chr8_1:76500322-76500341 None:intergenic 40.0%
ACAACTTTGTAAGATGCCTC+AGG + chr8_1:76500366-76500385 None:intergenic 40.0%
! TGAGGCATCTTACAAAGTTG+TGG - chr8_1:76500365-76500384 Msa1215220:CDS 40.0%
CTATGGAACCAAAGAGATCA+TGG + chr8_1:76500428-76500447 None:intergenic 40.0%
! AGCAAGAGATGATGGCATAA+TGG + chr8_1:76500692-76500711 None:intergenic 40.0%
! GATGGGAAAGTGTGGAATGT+AGG + chr8_1:76498297-76498316 None:intergenic 45.0%
TGAATTGGTGAGTGTGGGAT+GGG + chr8_1:76498314-76498333 None:intergenic 45.0%
!! GGGAAGAGATTTGGTTCTGA+AGG + chr8_1:76498349-76498368 None:intergenic 45.0%
GTTGAGGAAGGGAAGAGATT+TGG + chr8_1:76498358-76498377 None:intergenic 45.0%
ACCTTTGCGAAGTTGAGGAA+GGG + chr8_1:76498369-76498388 None:intergenic 45.0%
TACCTTTGCGAAGTTGAGGA+AGG + chr8_1:76498370-76498389 None:intergenic 45.0%
GTGTTACCTTTGCGAAGTTG+AGG + chr8_1:76498374-76498393 None:intergenic 45.0%
! GTTTTTGTTGCTGGAGCTAC+TGG - chr8_1:76498523-76498542 Msa1215220:CDS 45.0%
CGTGGAACAGTTACTTGCAA+AGG - chr8_1:76498564-76498583 Msa1215220:CDS 45.0%
!!! GGGTTTTGCTGTTAAAGCTG+GGG - chr8_1:76498585-76498604 Msa1215220:CDS 45.0%
TAAAGCTGGGGTTAGAGACT+TGG - chr8_1:76498597-76498616 Msa1215220:CDS 45.0%
ACACACAGCCCTGTTTGAAT+TGG + chr8_1:76498959-76498978 None:intergenic 45.0%
! TAGTTTGTGCCACAGGCTTT+CGG - chr8_1:76499098-76499117 Msa1215220:intron 45.0%
!! GTTTTGATATCAGCTGCCAC+TGG - chr8_1:76499245-76499264 Msa1215220:intron 45.0%
TAAGGCCACTCATTAACCAG+TGG + chr8_1:76499264-76499283 None:intergenic 45.0%
TTTAACACGCAGAAACCGGA+GGG + chr8_1:76499472-76499491 None:intergenic 45.0%
GATAGCTTTCATTCATGCCG+TGG - chr8_1:76499534-76499553 Msa1215220:intron 45.0%
! ATTGTTGGTTGGGACTTCAG+TGG - chr8_1:76499834-76499853 Msa1215220:CDS 45.0%
!! CTTCAGTGGATTATTCTCGC+TGG - chr8_1:76499848-76499867 Msa1215220:CDS 45.0%
CTTTCCTGCATGCTTCAACA+AGG + chr8_1:76499941-76499960 None:intergenic 45.0%
! AGCGGCTCCATTGACTAAAA+TGG + chr8_1:76499994-76500013 None:intergenic 45.0%
TTTAGTCAATGGAGCCGCTA+TGG - chr8_1:76499995-76500014 Msa1215220:intron 45.0%
TTAGTCAATGGAGCCGCTAT+GGG - chr8_1:76499996-76500015 Msa1215220:intron 45.0%
! TCAAGTTGCTGAAGTAGCTG+TGG - chr8_1:76500326-76500345 Msa1215220:CDS 45.0%
TGAAGTAGCTGTGGAATCGT+TGG - chr8_1:76500335-76500354 Msa1215220:CDS 45.0%
!!! TTAATTTTTTGTTTATATTA+TGG - chr8_1:76499156-76499175 Msa1215220:intron 5.0%
! CAGAGTTGTAGCGCCTTGTT+TGG - chr8_1:76498195-76498214 Msa1215220:three_prime_UTR 50.0%
!! TAGCGCCTTGTTTGGTAACC+TGG - chr8_1:76498203-76498222 Msa1215220:three_prime_UTR 50.0%
GTGAATTGGTGAGTGTGGGA+TGG + chr8_1:76498315-76498334 None:intergenic 50.0%
AGCGGTGAATTGGTGAGTGT+GGG + chr8_1:76498319-76498338 None:intergenic 50.0%
TCCCTTCCTCAACTTCGCAA+AGG - chr8_1:76498365-76498384 Msa1215220:three_prime_UTR 50.0%
CTGGAGCTACTGGTAGTACT+GGG - chr8_1:76498533-76498552 Msa1215220:CDS 50.0%
! GAAGCAGTAGTTTGTGCCAC+AGG - chr8_1:76499091-76499110 Msa1215220:intron 50.0%
! AGCTGCCACTGGTTAATGAG+TGG - chr8_1:76499256-76499275 Msa1215220:intron 50.0%
CAGAAACCGGAGGGAAAATG+TGG + chr8_1:76499463-76499482 None:intergenic 50.0%
GTTTAACACGCAGAAACCGG+AGG + chr8_1:76499473-76499492 None:intergenic 50.0%
TAGTCAATGGAGCCGCTATG+GGG - chr8_1:76499997-76500016 Msa1215220:intron 50.0%
ATTGAGTAGCTGCCCCATAG+CGG + chr8_1:76500012-76500031 None:intergenic 50.0%
TATGGGGCAGCTACTCAATC+CGG - chr8_1:76500013-76500032 Msa1215220:intron 50.0%
! CGTTTTCGGACTCACCTTAG+TGG - chr8_1:76500052-76500071 Msa1215220:intron 50.0%
!! GGATCGTTTTTCAACCCTCC+AGG + chr8_1:76500137-76500156 None:intergenic 50.0%
!! GGAATCGTTGGCTTATCCTG+AGG - chr8_1:76500347-76500366 Msa1215220:CDS 50.0%
AGATCATGGTATGCGCGCTT+AGG + chr8_1:76500414-76500433 None:intergenic 50.0%
CGCGCATACCATGATCTCTT+TGG - chr8_1:76500417-76500436 Msa1215220:CDS 50.0%
GAGTGTGGGATGGGAAAGTG+TGG + chr8_1:76498305-76498324 None:intergenic 55.0%
GAGCGGTGAATTGGTGAGTG+TGG + chr8_1:76498320-76498339 None:intergenic 55.0%
AGGAAGAGGGAGCGGTGAAT+TGG + chr8_1:76498329-76498348 None:intergenic 55.0%
!! GGTTCTGAAGGAAGAGGGAG+CGG + chr8_1:76498337-76498356 None:intergenic 55.0%
GCTGGAGCTACTGGTAGTAC+TGG - chr8_1:76498532-76498551 Msa1215220:CDS 55.0%
! GGATTTGCTTGCCCCATGGA+AGG - chr8_1:76499129-76499148 Msa1215220:intron 55.0%
!! TATGCGCGCTTAGGAGCATC+AGG + chr8_1:76500405-76500424 None:intergenic 55.0%
! GCTGGGATTTGCTTGCCCCA+TGG - chr8_1:76499125-76499144 Msa1215220:intron 60.0%
TGTGCCACAGGCTTTCGGCC+AGG - chr8_1:76499103-76499122 Msa1215220:intron 65.0%
CACAGGCTTTCGGCCAGGCT+GGG - chr8_1:76499108-76499127 Msa1215220:intron 65.0%
GGGGCAAGCAAATCCCAGCC+TGG + chr8_1:76499124-76499143 None:intergenic 65.0%
CCAGCCTGGCCGAAAGCCTG+TGG + chr8_1:76499110-76499129 None:intergenic 70.0%
CCACAGGCTTTCGGCCAGGC+TGG - chr8_1:76499107-76499126 Msa1215220:intron 70.0%
Chromosome Type Strat End Strand Name
chr8_1 gene 76498177 76500764 76498177 ID=Msa1215220;Name=Msa1215220
chr8_1 mRNA 76498177 76500764 76498177 ID=Msa1215220-mRNA-1;Parent=Msa1215220;Name=Msa1215220-mRNA-1;_AED=0.04;_eAED=0.04;_QI=90|1|1|1|1|1|5|306|292
chr8_1 exon 76498177 76498647 76498177 ID=Msa1215220-mRNA-1:exon:26286;Parent=Msa1215220-mRNA-1
chr8_1 exon 76498754 76499026 76498754 ID=Msa1215220-mRNA-1:exon:26285;Parent=Msa1215220-mRNA-1
chr8_1 exon 76499791 76499910 76499791 ID=Msa1215220-mRNA-1:exon:26284;Parent=Msa1215220-mRNA-1
chr8_1 exon 76500278 76500478 76500278 ID=Msa1215220-mRNA-1:exon:26283;Parent=Msa1215220-mRNA-1
chr8_1 exon 76500555 76500764 76500555 ID=Msa1215220-mRNA-1:exon:26282;Parent=Msa1215220-mRNA-1
chr8_1 five_prime_UTR 76500675 76500764 76500675 ID=Msa1215220-mRNA-1:five_prime_utr;Parent=Msa1215220-mRNA-1
chr8_1 CDS 76500555 76500674 76500555 ID=Msa1215220-mRNA-1:cds;Parent=Msa1215220-mRNA-1
chr8_1 CDS 76500278 76500478 76500278 ID=Msa1215220-mRNA-1:cds;Parent=Msa1215220-mRNA-1
chr8_1 CDS 76499791 76499910 76499791 ID=Msa1215220-mRNA-1:cds;Parent=Msa1215220-mRNA-1
chr8_1 CDS 76498754 76499026 76498754 ID=Msa1215220-mRNA-1:cds;Parent=Msa1215220-mRNA-1
chr8_1 CDS 76498483 76498647 76498483 ID=Msa1215220-mRNA-1:cds;Parent=Msa1215220-mRNA-1
chr8_1 three_prime_UTR 76498177 76498482 76498177 ID=Msa1215220-mRNA-1:three_prime_utr;Parent=Msa1215220-mRNA-1
Gene Sequence

>Msa1215220

ATGGCTTTTCCTCTTATTGCAAGAAACCCTACATTCCACACTTTCCCATCCCACACTCACCAATTCACCGCTCCCTCTTCCTTCAGAACCAAATCTCTTCCCTTCCTCAACTTCGCAAAGATGGAAGGAAGTGAAATCACTCAACAAGCAGTGGATGATGATTTGAGTTTGAAGAAGAAAGTTTTTGTTGCTGGAGCTACTGGTAGTACTGGGAAAAGAATCGTGGAACAGTTACTTGCAAAGGGTTTTGCTGTTAAAGCTGGGGTTAGAGACTTGGACAAAGCAAAAACTTCACTTTCTGCTAACCCATCTCTTCAATTTGTTAAAGTTGATGTCACAGAGGGTTCTGATAAGCTAGCTGAAGCAATTGGGGATGATACAGAAGCAGTAGTTTGTGCCACAGGCTTTCGGCCAGGCTGGGATTTGCTTGCCCCATGGAAGGTTGACAATTTTGGCACTGTAAACCTTGTTGAAGCATGCAGGAAAGTCAACGTTAACAGATTCATTCTTATAAGTTCCATTTTAGTCAATGGAGCCGCTATGGGGCAGCTACTCAATCCGGCTTACATCTTTCTCAACGTTTTCGGACTCACCTTAGTGGCAAAATTACAGGCAGAAAATCATATCAGGAAATCTGGTATAAATTACACAATCATAAGACCTGGAGGGTTGAAAAACGATCCTCCTACTGGAAATGTTGTTATGGAGCCAGAGGACACCCTTTATGAAGGTTCCATATCCAGAGATCAAGTTGCTGAAGTAGCTGTGGAATCGTTGGCTTATCCTGAGGCATCTTACAAAGTTGTGGAGATAGTCGCTCGACCTGATGCTCCTAAGCGCGCATACCATGATCTCTTTGGTTCCATAGTTCAGCGATAA

Protein sequence

>Msa1215220

MAFPLIARNPTFHTFPSHTHQFTAPSSFRTKSLPFLNFAKMEGSEITQQAVDDDLSLKKKVFVAGATGSTGKRIVEQLLAKGFAVKAGVRDLDKAKTSLSANPSLQFVKVDVTEGSDKLAEAIGDDTEAVVCATGFRPGWDLLAPWKVDNFGTVNLVEACRKVNVNRFILISSILVNGAAMGQLLNPAYIFLNVFGLTLVAKLQAENHIRKSGINYTIIRPGGLKNDPPTGNVVMEPEDTLYEGSISRDQVAEVAVESLAYPEASYKVVEIVARPDAPKRAYHDLFGSIVQR*