Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0003890 | Msa1342840 | 0.803270 | 3.776642e-49 | -8.615850e-47 |
| Msa0006070 | Msa1342840 | 0.802903 | 4.498531e-49 | -8.615850e-47 |
| Msa0011170 | Msa1342840 | 0.807733 | 4.376717e-50 | -8.615850e-47 |
| Msa0017070 | Msa1342840 | 0.807043 | 6.129144e-50 | -8.615850e-47 |
| Msa0017510 | Msa1342840 | 0.828395 | 9.208592e-55 | -8.615850e-47 |
| Msa0107020 | Msa1342840 | 0.819757 | 9.822831e-53 | -8.615850e-47 |
| Msa0107180 | Msa1342840 | 0.806626 | 7.507551e-50 | -8.615850e-47 |
| Msa0107580 | Msa1342840 | 0.805466 | 1.316748e-49 | -8.615850e-47 |
| Msa0112750 | Msa1342840 | 0.812886 | 3.382234e-51 | -8.615850e-47 |
| Msa0119960 | Msa1342840 | 0.824424 | 8.134406e-54 | -8.615850e-47 |
| Msa0610430 | Msa1342840 | 0.817650 | 2.954420e-52 | -8.615850e-47 |
| Msa0611800 | Msa1342840 | 0.800030 | 1.745087e-48 | -8.615850e-47 |
| Msa0616160 | Msa1342840 | 0.809060 | 2.280515e-50 | -8.615850e-47 |
| Msa0625720 | Msa1342840 | 0.807262 | 5.506880e-50 | -8.615850e-47 |
| Msa0657970 | Msa1342840 | 0.830321 | 3.136179e-55 | -8.615850e-47 |
| Msa0661650 | Msa1342840 | 0.800549 | 1.367901e-48 | -8.615850e-47 |
| Msa0661870 | Msa1342840 | 0.811221 | 7.804254e-51 | -8.615850e-47 |
| Msa0663240 | Msa1342840 | 0.802687 | 4.984494e-49 | -8.615850e-47 |
| Msa0663380 | Msa1342840 | 0.802419 | 5.661598e-49 | -8.615850e-47 |
| Msa0673450 | Msa1342840 | 0.827670 | 1.375901e-54 | -8.615850e-47 |
| Msa0673460 | Msa1342840 | 0.832709 | 8.096596e-56 | -8.615850e-47 |
| Msa0678930 | Msa1342840 | 0.806039 | 9.983976e-50 | -8.615850e-47 |
| Msa0681250 | Msa1342840 | 0.816121 | 6.511823e-52 | -8.615850e-47 |
| Msa0681270 | Msa1342840 | 0.834457 | 2.964979e-56 | -8.615850e-47 |
| Msa0687070 | Msa1342840 | 0.872565 | 2.884585e-67 | -8.615850e-47 |
| Msa0692950 | Msa1342840 | 0.811922 | 5.493138e-51 | -8.615850e-47 |
| Msa0726140 | Msa1342840 | 0.801332 | 9.467632e-49 | -8.615850e-47 |
| Msa0731550 | Msa1342840 | 0.801673 | 8.059620e-49 | -8.615850e-47 |
| Msa0735170 | Msa1342840 | 0.825890 | 3.662815e-54 | -8.615850e-47 |
| Msa0743720 | Msa1342840 | 0.818768 | 1.649682e-52 | -8.615850e-47 |
| Msa0743950 | Msa1342840 | 0.800505 | 1.396844e-48 | -8.615850e-47 |
| Msa0745790 | Msa1342840 | 0.807156 | 5.799278e-50 | -8.615850e-47 |
| Msa0766630 | Msa1342840 | 0.851575 | 8.114697e-61 | -8.615850e-47 |
| Msa0768310 | Msa1342840 | 0.802142 | 6.456478e-49 | -8.615850e-47 |
| Msa0769920 | Msa1342840 | 0.845888 | 3.066948e-59 | -8.615850e-47 |
| Msa0777790 | Msa1342840 | 0.800669 | 1.292863e-48 | -8.615850e-47 |
| Msa0806090 | Msa1342840 | 0.828478 | 8.792237e-55 | -8.615850e-47 |
| Msa0813400 | Msa1342840 | 0.800870 | 1.176684e-48 | -8.615850e-47 |
| Msa0822870 | Msa1342840 | 0.802379 | 5.768431e-49 | -8.615850e-47 |
| Msa0122590 | Msa1342840 | 0.803970 | 2.702983e-49 | -8.615850e-47 |
| Msa0131770 | Msa1342840 | 0.849865 | 2.456884e-60 | -8.615850e-47 |
| Msa0139060 | Msa1342840 | 0.807082 | 6.014025e-50 | -8.615850e-47 |
| Msa0142220 | Msa1342840 | 0.819673 | 1.026695e-52 | -8.615850e-47 |
| Msa0153910 | Msa1342840 | 0.846118 | 2.655246e-59 | -8.615850e-47 |
| Msa0157290 | Msa1342840 | 0.827982 | 1.157939e-54 | -8.615850e-47 |
| Msa0158480 | Msa1342840 | 0.800446 | 1.436074e-48 | -8.615850e-47 |
| Msa0165210 | Msa1342840 | 0.811587 | 6.499614e-51 | -8.615850e-47 |
| Msa0166870 | Msa1342840 | 0.801580 | 8.421641e-49 | -8.615850e-47 |
| Msa0178930 | Msa1342840 | 0.824709 | 6.968653e-54 | -8.615850e-47 |
| Msa0188830 | Msa1342840 | 0.802073 | 6.670411e-49 | -8.615850e-47 |
| Msa0215320 | Msa1342840 | -0.807245 | 5.555196e-50 | -8.615850e-47 |
| Msa0215680 | Msa1342840 | 0.800093 | 1.694401e-48 | -8.615850e-47 |
| Msa0220580 | Msa1342840 | 0.800094 | 1.693111e-48 | -8.615850e-47 |
| Msa0223010 | Msa1342840 | 0.806994 | 6.276864e-50 | -8.615850e-47 |
| Msa0223260 | Msa1342840 | 0.801370 | 9.298062e-49 | -8.615850e-47 |
| Msa0226890 | Msa1342840 | 0.812070 | 5.100888e-51 | -8.615850e-47 |
| Msa0233300 | Msa1342840 | 0.827766 | 1.305072e-54 | -8.615850e-47 |
| Msa1226660 | Msa1342840 | 0.803885 | 2.815688e-49 | -8.615850e-47 |
| Msa1228590 | Msa1342840 | 0.802466 | 5.536641e-49 | -8.615850e-47 |
| Msa1244250 | Msa1342840 | 0.808672 | 2.760463e-50 | -8.615850e-47 |
| Msa1246510 | Msa1342840 | 0.805288 | 1.435365e-49 | -8.615850e-47 |
| Msa1249490 | Msa1342840 | 0.805617 | 1.224596e-49 | -8.615850e-47 |
| Msa1253000 | Msa1342840 | 0.801283 | 9.687689e-49 | -8.615850e-47 |
| Msa1253020 | Msa1342840 | 0.812380 | 4.365871e-51 | -8.615850e-47 |
| Msa1269230 | Msa1342840 | 0.804599 | 1.999135e-49 | -8.615850e-47 |
| Msa1277660 | Msa1342840 | 0.817758 | 2.792648e-52 | -8.615850e-47 |
| Msa1283860 | Msa1342840 | 0.811291 | 7.535587e-51 | -8.615850e-47 |
| Msa1284680 | Msa1342840 | 0.829061 | 6.355465e-55 | -8.615850e-47 |
| Msa1302830 | Msa1342840 | 0.802837 | 4.641193e-49 | -8.615850e-47 |
| Msa1318990 | Msa1342840 | 0.803758 | 2.992068e-49 | -8.615850e-47 |
| Msa1322890 | Msa1342840 | 0.805312 | 1.418853e-49 | -8.615850e-47 |
| Msa1327680 | Msa1342840 | 0.813208 | 2.875435e-51 | -8.615850e-47 |
| Msa1342840 | Msa1359040 | 0.840617 | 7.807835e-58 | -8.615850e-47 |
| Msa1342840 | Msa1366810 | 0.808713 | 2.705160e-50 | -8.615850e-47 |
| Msa1342840 | Msa1372760 | 0.812530 | 4.047791e-51 | -8.615850e-47 |
| Msa1342840 | Msa1373030 | 0.807054 | 6.095919e-50 | -8.615850e-47 |
| Msa1342840 | Msa1390050 | 0.809748 | 1.623456e-50 | -8.615850e-47 |
| Msa1342840 | Msa1392260 | 0.807933 | 3.968665e-50 | -8.615850e-47 |
| Msa1342840 | Msa1397860 | 0.800631 | 1.316241e-48 | -8.615850e-47 |
| Msa1342840 | Msa1403480 | 0.803151 | 3.996841e-49 | -8.615850e-47 |
| Msa1342840 | Msa1409870 | 0.809024 | 2.321297e-50 | -8.615850e-47 |
| Msa1342840 | Msa1411020 | 0.813558 | 2.408544e-51 | -8.615850e-47 |
| Msa1342840 | Msa1415910 | 0.808895 | 2.474053e-50 | -8.615850e-47 |
| Msa1342840 | Msa1424290 | 0.810617 | 1.054528e-50 | -8.615850e-47 |
| Msa1342840 | Msa1427230 | 0.812989 | 3.211945e-51 | -8.615850e-47 |
| Msa1342840 | Msa1429900 | 0.800449 | 1.433857e-48 | -8.615850e-47 |
| Msa1342840 | Msa1434350 | 0.810128 | 1.344560e-50 | -8.615850e-47 |
| Msa1342840 | Msa1435650 | 0.804147 | 2.483957e-49 | -8.615850e-47 |
| Msa1342840 | Msa1439320 | 0.813775 | 2.157778e-51 | -8.615850e-47 |
| Msa1342840 | Msa1440370 | 0.802120 | 6.524127e-49 | -8.615850e-47 |
| Msa1342840 | Msa1440810 | 0.802923 | 4.456455e-49 | -8.615850e-47 |
| Msa1342840 | Msa1451620 | -0.808041 | 3.763893e-50 | -8.615850e-47 |
| Msa1342840 | Msa1452240 | 0.806326 | 8.684869e-50 | -8.615850e-47 |
| Msa1342840 | Msa1460830 | 0.818864 | 1.569255e-52 | -8.615850e-47 |
| Msa1342840 | Msa1464940 | 0.826399 | 2.771725e-54 | -8.615850e-47 |
| Msa1342840 | Msa1466540 | 0.830151 | 3.451152e-55 | -8.615850e-47 |
| Msa0371730 | Msa1342840 | 0.809213 | 2.114989e-50 | -8.615850e-47 |
| Msa0397750 | Msa1342840 | 0.815789 | 7.722955e-52 | -8.615850e-47 |
| Msa0402290 | Msa1342840 | 0.801870 | 7.343703e-49 | -8.615850e-47 |
| Msa0417080 | Msa1342840 | 0.802429 | 5.633433e-49 | -8.615850e-47 |
| Msa0431690 | Msa1342840 | 0.835883 | 1.294856e-56 | -8.615850e-47 |
| Msa0432290 | Msa1342840 | 0.816370 | 5.727314e-52 | -8.615850e-47 |
| Msa0432300 | Msa1342840 | 0.829254 | 5.706828e-55 | -8.615850e-47 |
| Msa0435230 | Msa1342840 | 0.827119 | 1.865145e-54 | -8.615850e-47 |
| Msa0436780 | Msa1342840 | 0.809289 | 2.036910e-50 | -8.615850e-47 |
| Msa0437990 | Msa1342840 | 0.809811 | 1.573107e-50 | -8.615850e-47 |
| Msa0444130 | Msa1342840 | 0.832252 | 1.050996e-55 | -8.615850e-47 |
| Msa0452620 | Msa1342840 | 0.836461 | 9.234685e-57 | -8.615850e-47 |
| Msa0453120 | Msa1342840 | 0.814762 | 1.306327e-51 | -8.615850e-47 |
| Msa0466120 | Msa1342840 | 0.806024 | 1.005491e-49 | -8.615850e-47 |
| Msa0467060 | Msa1342840 | 0.810502 | 1.116614e-50 | -8.615850e-47 |
| Msa0479340 | Msa1342840 | 0.801567 | 8.470685e-49 | -8.615850e-47 |
| Msa0983090 | Msa1342840 | 0.801562 | 8.490406e-49 | -8.615850e-47 |
| Msa1014540 | Msa1342840 | 0.845867 | 3.107086e-59 | -8.615850e-47 |
| Msa1014990 | Msa1342840 | 0.822248 | 2.622465e-53 | -8.615850e-47 |
| Msa1023950 | Msa1342840 | 0.809067 | 2.272743e-50 | -8.615850e-47 |
| Msa1030970 | Msa1342840 | 0.822599 | 2.173705e-53 | -8.615850e-47 |
| Msa1075220 | Msa1342840 | -0.836481 | 9.126580e-57 | -8.615850e-47 |
| Msa1075540 | Msa1342840 | 0.808286 | 3.336558e-50 | -8.615850e-47 |
| Msa1075650 | Msa1342840 | 0.810215 | 1.287882e-50 | -8.615850e-47 |
| Msa1082500 | Msa1342840 | 0.843477 | 1.367700e-58 | -8.615850e-47 |
| Msa1085740 | Msa1342840 | 0.804501 | 2.095910e-49 | -8.615850e-47 |
| Msa1104090 | Msa1342840 | 0.800236 | 1.584538e-48 | -8.615850e-47 |
| Msa0251320 | Msa1342840 | 0.810356 | 1.200858e-50 | -8.615850e-47 |
| Msa0262510 | Msa1342840 | 0.803811 | 2.917068e-49 | -8.615850e-47 |
| Msa0280090 | Msa1342840 | 0.801857 | 7.386149e-49 | -8.615850e-47 |
| Msa0283450 | Msa1342840 | 0.812310 | 4.520754e-51 | -8.615850e-47 |
| Msa0291540 | Msa1342840 | 0.800771 | 1.232699e-48 | -8.615850e-47 |
| Msa0309020 | Msa1342840 | 0.813031 | 3.144201e-51 | -8.615850e-47 |
| Msa0319170 | Msa1342840 | 0.805930 | 1.052303e-49 | -8.615850e-47 |
| Msa0339620 | Msa1342840 | 0.814757 | 1.309184e-51 | -8.615850e-47 |
| Msa0340450 | Msa1342840 | 0.805631 | 1.215893e-49 | -8.615850e-47 |
| Msa0344690 | Msa1342840 | -0.804449 | 2.148487e-49 | -8.615850e-47 |
| Msa0344910 | Msa1342840 | 0.826861 | 2.150400e-54 | -8.615850e-47 |
| Msa0344980 | Msa1342840 | 0.824583 | 7.462698e-54 | -8.615850e-47 |
| Msa0345970 | Msa1342840 | 0.801321 | 9.515899e-49 | -8.615850e-47 |
| Msa1116130 | Msa1342840 | -0.821314 | 4.313132e-53 | -8.615850e-47 |
| Msa1116260 | Msa1342840 | 0.804098 | 2.542967e-49 | -8.615850e-47 |
| Msa1121490 | Msa1342840 | 0.801956 | 7.048218e-49 | -8.615850e-47 |
| Msa1136090 | Msa1342840 | 0.839144 | 1.888978e-57 | -8.615850e-47 |
| Msa1139000 | Msa1342840 | -0.816521 | 5.297260e-52 | -8.615850e-47 |
| Msa1162550 | Msa1342840 | -0.832730 | 8.003023e-56 | -8.615850e-47 |
| Msa1174040 | Msa1342840 | 0.823648 | 1.237226e-53 | -8.615850e-47 |
| Msa1179770 | Msa1342840 | 0.800343 | 1.506922e-48 | -8.615850e-47 |
| Msa1186950 | Msa1342840 | -0.805510 | 1.289384e-49 | -8.615850e-47 |
| Msa1187950 | Msa1342840 | 0.800909 | 1.155155e-48 | -8.615850e-47 |
| Msa1205130 | Msa1342840 | 0.805663 | 1.197565e-49 | -8.615850e-47 |
| Msa0484780 | Msa1342840 | 0.824833 | 6.516204e-54 | -8.615850e-47 |
| Msa0502880 | Msa1342840 | 0.806437 | 8.228192e-50 | -8.615850e-47 |
| Msa0507440 | Msa1342840 | 0.800164 | 1.638330e-48 | -8.615850e-47 |
| Msa0512750 | Msa1342840 | 0.805654 | 1.202561e-49 | -8.615850e-47 |
| Msa0512900 | Msa1342840 | 0.810298 | 1.235955e-50 | -8.615850e-47 |
| Msa0513490 | Msa1342840 | 0.804868 | 1.756612e-49 | -8.615850e-47 |
| Msa0529890 | Msa1342840 | 0.804361 | 2.241315e-49 | -8.615850e-47 |
| Msa0531180 | Msa1342840 | 0.815313 | 9.856613e-52 | -8.615850e-47 |
| Msa0532350 | Msa1342840 | 0.825255 | 5.177802e-54 | -8.615850e-47 |
| Msa0536220 | Msa1342840 | 0.802525 | 5.382486e-49 | -8.615850e-47 |
| Msa0554740 | Msa1342840 | 0.800222 | 1.595048e-48 | -8.615850e-47 |
| Msa0575700 | Msa1342840 | 0.800991 | 1.111216e-48 | -8.615850e-47 |
| Msa0599890 | Msa1342840 | 0.816902 | 4.353028e-52 | -8.615850e-47 |
| Msa0600700 | Msa1342840 | 0.807389 | 5.176048e-50 | -8.615850e-47 |
| Msa0843260 | Msa1342840 | 0.807571 | 4.736596e-50 | -8.615850e-47 |
| Msa0880140 | Msa1342840 | 0.823950 | 1.051105e-53 | -8.615850e-47 |
| Msa0885280 | Msa1342840 | 0.842400 | 2.647160e-58 | -8.615850e-47 |
| Msa0897880 | Msa1342840 | 0.810964 | 8.872236e-51 | -8.615850e-47 |
| Msa0901400 | Msa1342840 | 0.808886 | 2.484606e-50 | -8.615850e-47 |
| Msa0907260 | Msa1342840 | 0.822241 | 2.632061e-53 | -8.615850e-47 |
| Msa0909140 | Msa1342840 | 0.818095 | 2.343854e-52 | -8.615850e-47 |
| Msa0918220 | Msa1342840 | 0.800909 | 1.155386e-48 | -8.615850e-47 |
| Msa0933100 | Msa1342840 | 0.813652 | 2.296633e-51 | -8.615850e-47 |
| Msa0935910 | Msa1342840 | 0.801007 | 1.103199e-48 | -8.615850e-47 |
| Msa0947660 | Msa1342840 | 0.827152 | 1.832315e-54 | -8.615850e-47 |
| Msa0954130 | Msa1342840 | 0.810329 | 1.217110e-50 | -8.615850e-47 |
| Msa0954910 | Msa1342840 | 0.832687 | 8.200686e-56 | -8.615850e-47 |
| Msa0956270 | Msa1342840 | 0.834925 | 2.260970e-56 | -8.615850e-47 |
| Msa0969450 | Msa1342840 | 0.811812 | 5.806794e-51 | -8.615850e-47 |
| Msa0969520 | Msa1342840 | 0.837393 | 5.338890e-57 | -8.615850e-47 |
| Msa0974070 | Msa1342840 | 0.804855 | 1.768011e-49 | -8.615850e-47 |
| Msa0975220 | Msa1342840 | 0.808370 | 3.201658e-50 | -8.615850e-47 |
| Msa0976670 | Msa1342840 | 0.803420 | 3.516370e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 22 sgRNAs with CRISPR-Local
Find 142 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTGTGCAGGGATGACGGTTT+GGG | 0.226189 | tig0006056:+79487 | Msa1342840:CDS |
| TCATTATACCTAACATAAAT+TGG | 0.230942 | tig0006056:-79579 | None:intergenic |
| CGTGTCAAGAGCGGGGTTCT+TGG | 0.312982 | tig0006056:+80515 | Msa1342840:CDS |
| TTTGTGCAGGGATGACGGTT+TGG | 0.330848 | tig0006056:+79486 | Msa1342840:CDS |
| GTGGATGTCCAATTTATGTT+AGG | 0.355114 | tig0006056:+79571 | Msa1342840:CDS |
| TGTGGCGCAACTCATGAAAT+TGG | 0.429611 | tig0006056:+79549 | Msa1342840:CDS |
| CAAGAAATCGTGTCAAGAGC+GGG | 0.461491 | tig0006056:+80507 | Msa1342840:CDS |
| GCATTGTCTCTGCCATCATA+TGG | 0.506035 | tig0006056:+79516 | Msa1342840:CDS |
| TGTGCAGGGATGACGGTTTG+GGG | 0.521080 | tig0006056:+79488 | Msa1342840:CDS |
| CATGAGTTGCGCCACATCAA+AGG | 0.541976 | tig0006056:-79542 | None:intergenic |
| CATCAAAGGCTACCATATGA+TGG | 0.567903 | tig0006056:-79528 | None:intergenic |
| CTCGTATCACTCTTCACCCA+CGG | 0.572581 | tig0006056:-80542 | None:intergenic |
| TTGTGTATAACAGTTCGTGA+TGG | 0.600002 | tig0006056:+80286 | Msa1342840:intron |
| TGTATAACAGTTCGTGATGG+AGG | 0.603492 | tig0006056:+80289 | Msa1342840:intron |
| GAGTGAACACGGTTGATGCT+TGG | 0.608303 | tig0006056:-80469 | None:intergenic |
| CGGGGTTCTTGGAACACCGT+GGG | 0.615525 | tig0006056:+80526 | Msa1342840:CDS |
| GGCGCAACTCATGAAATTGG+TGG | 0.617859 | tig0006056:+79552 | Msa1342840:CDS |
| TCAAGAAATCGTGTCAAGAG+CGG | 0.632895 | tig0006056:+80506 | Msa1342840:CDS |
| TCATATGGTAGCCTTTGATG+TGG | 0.643558 | tig0006056:+79531 | Msa1342840:CDS |
| AAGAAATCGTGTCAAGAGCG+GGG | 0.665713 | tig0006056:+80508 | Msa1342840:CDS |
| GCGGGGTTCTTGGAACACCG+TGG | 0.682296 | tig0006056:+80525 | Msa1342840:CDS |
| CGTGGGTGAAGAGTGATACG+AGG | 0.709427 | tig0006056:+80543 | Msa1342840:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATTTGTTTTAGTTCTATAAA+TGG | + | tig0006056:80013-80032 | Msa1342840:intron | 15.0% |
| !!! | ATTTGTTTTAGTTCTATAAA+TGG | + | tig0006056:80013-80032 | Msa1342840:intron | 15.0% |
| !! | TCATTATACCTAACATAAAT+TGG | - | tig0006056:79582-79601 | None:intergenic | 20.0% |
| !! | TTTATACACATTCATGAAAT+GGG | + | tig0006056:79623-79642 | Msa1342840:intron | 20.0% |
| !!! | TTTTGTTTTTATCTCTATGA+TGG | + | tig0006056:79665-79684 | Msa1342840:intron | 20.0% |
| !!! | TTCATGTTTCTTCAATTTTA+TGG | + | tig0006056:80045-80064 | Msa1342840:intron | 20.0% |
| !!! | AATAAACCTTTTTATGTCTA+TGG | + | tig0006056:80147-80166 | Msa1342840:intron | 20.0% |
| !! | GAAGAATAAAAATAATGTAG+TGG | + | tig0006056:80565-80584 | Msa1342840:CDS | 20.0% |
| !! | TCATTATACCTAACATAAAT+TGG | - | tig0006056:79582-79601 | None:intergenic | 20.0% |
| !! | TTTATACACATTCATGAAAT+GGG | + | tig0006056:79623-79642 | Msa1342840:intron | 20.0% |
| !!! | TTTTGTTTTTATCTCTATGA+TGG | + | tig0006056:79665-79684 | Msa1342840:intron | 20.0% |
| !!! | TTCATGTTTCTTCAATTTTA+TGG | + | tig0006056:80045-80064 | Msa1342840:intron | 20.0% |
| !!! | AATAAACCTTTTTATGTCTA+TGG | + | tig0006056:80147-80166 | Msa1342840:intron | 20.0% |
| !! | GAAGAATAAAAATAATGTAG+TGG | + | tig0006056:80565-80584 | Msa1342840:CDS | 20.0% |
| !!! | TTTTATTGTTGTTTCTAGAC+AGG | + | tig0006056:79462-79481 | Msa1342840:CDS | 25.0% |
| ! | CTTTATACACATTCATGAAA+TGG | + | tig0006056:79622-79641 | Msa1342840:intron | 25.0% |
| ! | ATTATTTGCTTAGAAACTCA+AGG | - | tig0006056:79888-79907 | None:intergenic | 25.0% |
| ! | TTGAGTTTCTAAGCAAATAA+TGG | + | tig0006056:79887-79906 | Msa1342840:intron | 25.0% |
| ! | TTGCTATGTACATAACTAAA+TGG | + | tig0006056:79962-79981 | Msa1342840:intron | 25.0% |
| !! | CTTTAGCATAATTGTTTTCA+AGG | - | tig0006056:79988-80007 | None:intergenic | 25.0% |
| ! | TCAAATCCATAGACATAAAA+AGG | - | tig0006056:80156-80175 | None:intergenic | 25.0% |
| !!! | GATTTTTTATAGTGGAAGTT+TGG | + | tig0006056:80256-80275 | Msa1342840:intron | 25.0% |
| ! | TACAATATAATACCAAGCAA+AGG | + | tig0006056:80394-80413 | Msa1342840:intron | 25.0% |
| !!! | TTTTATTGTTGTTTCTAGAC+AGG | + | tig0006056:79462-79481 | Msa1342840:CDS | 25.0% |
| ! | CTTTATACACATTCATGAAA+TGG | + | tig0006056:79622-79641 | Msa1342840:intron | 25.0% |
| ! | ATTATTTGCTTAGAAACTCA+AGG | - | tig0006056:79888-79907 | None:intergenic | 25.0% |
| ! | TTGAGTTTCTAAGCAAATAA+TGG | + | tig0006056:79887-79906 | Msa1342840:intron | 25.0% |
| ! | TTGCTATGTACATAACTAAA+TGG | + | tig0006056:79962-79981 | Msa1342840:intron | 25.0% |
| !! | CTTTAGCATAATTGTTTTCA+AGG | - | tig0006056:79988-80007 | None:intergenic | 25.0% |
| ! | TCAAATCCATAGACATAAAA+AGG | - | tig0006056:80156-80175 | None:intergenic | 25.0% |
| !!! | GATTTTTTATAGTGGAAGTT+TGG | + | tig0006056:80256-80275 | Msa1342840:intron | 25.0% |
| ! | TACAATATAATACCAAGCAA+AGG | + | tig0006056:80394-80413 | Msa1342840:intron | 25.0% |
| !!! | TATGTTTTGATGACTCTTAC+TGG | + | tig0006056:79433-79452 | Msa1342840:exon | 30.0% |
| TGAAATGGGCATAGATTTAA+TGG | + | tig0006056:79637-79656 | Msa1342840:intron | 30.0% | |
| TCTTAAGAAGATCAAAGTTG+AGG | - | tig0006056:79714-79733 | None:intergenic | 30.0% | |
| TAGGTTTATGCATACAAATC+AGG | + | tig0006056:79787-79806 | Msa1342840:intron | 30.0% | |
| AGAAACTATCTAATGTTTCC+AGG | + | tig0006056:79850-79869 | Msa1342840:intron | 30.0% | |
| GAAACTATCTAATGTTTCCA+GGG | + | tig0006056:79851-79870 | Msa1342840:intron | 30.0% | |
| TGACAGACTAACATAAAGAA+TGG | - | tig0006056:79934-79953 | None:intergenic | 30.0% | |
| TATGGATAACAACACATGAT+TGG | + | tig0006056:80063-80082 | Msa1342840:intron | 30.0% | |
| ATGGATAACAACACATGATT+GGG | + | tig0006056:80064-80083 | Msa1342840:intron | 30.0% | |
| TTCAAATTGCTATCTTCACA+TGG | - | tig0006056:80096-80115 | None:intergenic | 30.0% | |
| GAACTACAATCTCATACAAA+GGG | - | tig0006056:80120-80139 | None:intergenic | 30.0% | |
| TGAACTACAATCTCATACAA+AGG | - | tig0006056:80121-80140 | None:intergenic | 30.0% | |
| !!! | CAGTTCGTGATTTTTTATAG+TGG | + | tig0006056:80248-80267 | Msa1342840:intron | 30.0% |
| TCTACAATATTGTTGTAGCT+TGG | + | tig0006056:80365-80384 | Msa1342840:intron | 30.0% | |
| CTACAATATTGTTGTAGCTT+GGG | + | tig0006056:80366-80385 | Msa1342840:intron | 30.0% | |
| TATAATACCAAGCAAAGGTT+CGG | + | tig0006056:80399-80418 | Msa1342840:intron | 30.0% | |
| !!! | TATGTTTTGATGACTCTTAC+TGG | + | tig0006056:79433-79452 | Msa1342840:exon | 30.0% |
| TGAAATGGGCATAGATTTAA+TGG | + | tig0006056:79637-79656 | Msa1342840:intron | 30.0% | |
| TCTTAAGAAGATCAAAGTTG+AGG | - | tig0006056:79714-79733 | None:intergenic | 30.0% | |
| TAGGTTTATGCATACAAATC+AGG | + | tig0006056:79787-79806 | Msa1342840:intron | 30.0% | |
| AGAAACTATCTAATGTTTCC+AGG | + | tig0006056:79850-79869 | Msa1342840:intron | 30.0% | |
| GAAACTATCTAATGTTTCCA+GGG | + | tig0006056:79851-79870 | Msa1342840:intron | 30.0% | |
| TGACAGACTAACATAAAGAA+TGG | - | tig0006056:79934-79953 | None:intergenic | 30.0% | |
| TATGGATAACAACACATGAT+TGG | + | tig0006056:80063-80082 | Msa1342840:intron | 30.0% | |
| ATGGATAACAACACATGATT+GGG | + | tig0006056:80064-80083 | Msa1342840:intron | 30.0% | |
| TTCAAATTGCTATCTTCACA+TGG | - | tig0006056:80096-80115 | None:intergenic | 30.0% | |
| GAACTACAATCTCATACAAA+GGG | - | tig0006056:80120-80139 | None:intergenic | 30.0% | |
| TGAACTACAATCTCATACAA+AGG | - | tig0006056:80121-80140 | None:intergenic | 30.0% | |
| !!! | CAGTTCGTGATTTTTTATAG+TGG | + | tig0006056:80248-80267 | Msa1342840:intron | 30.0% |
| TCTACAATATTGTTGTAGCT+TGG | + | tig0006056:80365-80384 | Msa1342840:intron | 30.0% | |
| CTACAATATTGTTGTAGCTT+GGG | + | tig0006056:80366-80385 | Msa1342840:intron | 30.0% | |
| TATAATACCAAGCAAAGGTT+CGG | + | tig0006056:80399-80418 | Msa1342840:intron | 30.0% | |
| GTGGATGTCCAATTTATGTT+AGG | + | tig0006056:79571-79590 | Msa1342840:CDS | 35.0% | |
| AATGGGCATAGATTTAATGG+AGG | + | tig0006056:79640-79659 | Msa1342840:intron | 35.0% | |
| CTTTGATCTTCTTAAGAAGC+TGG | + | tig0006056:79717-79736 | Msa1342840:intron | 35.0% | |
| ACAAAAAGAGAGTCATGTGT+AGG | - | tig0006056:79747-79766 | None:intergenic | 35.0% | |
| TTGTGTATAACAGTTCGTGA+TGG | + | tig0006056:80286-80305 | Msa1342840:intron | 35.0% | |
| ATAATACCAAGCAAAGGTTC+GGG | + | tig0006056:80400-80419 | Msa1342840:intron | 35.0% | |
| ATTTGACGATCTTCTTCATG+TGG | - | tig0006056:80429-80448 | None:intergenic | 35.0% | |
| ! | GTCTTTTATTCGAGTGAACA+CGG | - | tig0006056:80483-80502 | None:intergenic | 35.0% |
| GTGGATGTCCAATTTATGTT+AGG | + | tig0006056:79571-79590 | Msa1342840:CDS | 35.0% | |
| AATGGGCATAGATTTAATGG+AGG | + | tig0006056:79640-79659 | Msa1342840:intron | 35.0% | |
| CTTTGATCTTCTTAAGAAGC+TGG | + | tig0006056:79717-79736 | Msa1342840:intron | 35.0% | |
| ACAAAAAGAGAGTCATGTGT+AGG | - | tig0006056:79747-79766 | None:intergenic | 35.0% | |
| TTGTGTATAACAGTTCGTGA+TGG | + | tig0006056:80286-80305 | Msa1342840:intron | 35.0% | |
| ATAATACCAAGCAAAGGTTC+GGG | + | tig0006056:80400-80419 | Msa1342840:intron | 35.0% | |
| ATTTGACGATCTTCTTCATG+TGG | - | tig0006056:80429-80448 | None:intergenic | 35.0% | |
| ! | GTCTTTTATTCGAGTGAACA+CGG | - | tig0006056:80483-80502 | None:intergenic | 35.0% |
| !! | TTTCTAGACAGGTTTTGTGC+AGG | + | tig0006056:79473-79492 | Msa1342840:CDS | 40.0% |
| !! | TTCTAGACAGGTTTTGTGCA+GGG | + | tig0006056:79474-79493 | Msa1342840:CDS | 40.0% |
| CATCAAAGGCTACCATATGA+TGG | - | tig0006056:79531-79550 | None:intergenic | 40.0% | |
| TCATATGGTAGCCTTTGATG+TGG | + | tig0006056:79531-79550 | Msa1342840:CDS | 40.0% | |
| !! | ACAAATCAGGTGCTATTAGC+TGG | + | tig0006056:79800-79819 | Msa1342840:intron | 40.0% |
| TGTATAACAGTTCGTGATGG+AGG | + | tig0006056:80289-80308 | Msa1342840:intron | 40.0% | |
| ! | CGTGATGGAGGTAAAAAAGA+AGG | + | tig0006056:80301-80320 | Msa1342840:CDS | 40.0% |
| TCAAGAAATCGTGTCAAGAG+CGG | + | tig0006056:80506-80525 | Msa1342840:CDS | 40.0% | |
| !! | TTTCTAGACAGGTTTTGTGC+AGG | + | tig0006056:79473-79492 | Msa1342840:CDS | 40.0% |
| !! | TTCTAGACAGGTTTTGTGCA+GGG | + | tig0006056:79474-79493 | Msa1342840:CDS | 40.0% |
| CATCAAAGGCTACCATATGA+TGG | - | tig0006056:79531-79550 | None:intergenic | 40.0% | |
| TCATATGGTAGCCTTTGATG+TGG | + | tig0006056:79531-79550 | Msa1342840:CDS | 40.0% | |
| !! | ACAAATCAGGTGCTATTAGC+TGG | + | tig0006056:79800-79819 | Msa1342840:intron | 40.0% |
| TGTATAACAGTTCGTGATGG+AGG | + | tig0006056:80289-80308 | Msa1342840:intron | 40.0% | |
| ! | CGTGATGGAGGTAAAAAAGA+AGG | + | tig0006056:80301-80320 | Msa1342840:CDS | 40.0% |
| TCAAGAAATCGTGTCAAGAG+CGG | + | tig0006056:80506-80525 | Msa1342840:CDS | 40.0% | |
| GCATTGTCTCTGCCATCATA+TGG | + | tig0006056:79516-79535 | Msa1342840:CDS | 45.0% | |
| TGTGGCGCAACTCATGAAAT+TGG | + | tig0006056:79549-79568 | Msa1342840:CDS | 45.0% | |
| AGATCAAAGTTGAGGTTGCG+TGG | - | tig0006056:79706-79725 | None:intergenic | 45.0% | |
| GATCTTCTTAAGAAGCTGGC+AGG | + | tig0006056:79721-79740 | Msa1342840:intron | 45.0% | |
| ATCTGACGAGAGATACGACT+AGG | + | tig0006056:79768-79787 | Msa1342840:intron | 45.0% | |
| !! | TGCTATTAGCTGGTGTTGGT+TGG | + | tig0006056:79810-79829 | Msa1342840:intron | 45.0% |
| TCAAGGATCTTTAGATGCCC+TGG | - | tig0006056:79871-79890 | None:intergenic | 45.0% | |
| CAAGAAATCGTGTCAAGAGC+GGG | + | tig0006056:80507-80526 | Msa1342840:CDS | 45.0% | |
| AAGAAATCGTGTCAAGAGCG+GGG | + | tig0006056:80508-80527 | Msa1342840:CDS | 45.0% | |
| GCATTGTCTCTGCCATCATA+TGG | + | tig0006056:79516-79535 | Msa1342840:CDS | 45.0% | |
| TGTGGCGCAACTCATGAAAT+TGG | + | tig0006056:79549-79568 | Msa1342840:CDS | 45.0% | |
| AGATCAAAGTTGAGGTTGCG+TGG | - | tig0006056:79706-79725 | None:intergenic | 45.0% | |
| GATCTTCTTAAGAAGCTGGC+AGG | + | tig0006056:79721-79740 | Msa1342840:intron | 45.0% | |
| ATCTGACGAGAGATACGACT+AGG | + | tig0006056:79768-79787 | Msa1342840:intron | 45.0% | |
| !! | TGCTATTAGCTGGTGTTGGT+TGG | + | tig0006056:79810-79829 | Msa1342840:intron | 45.0% |
| TCAAGGATCTTTAGATGCCC+TGG | - | tig0006056:79871-79890 | None:intergenic | 45.0% | |
| CAAGAAATCGTGTCAAGAGC+GGG | + | tig0006056:80507-80526 | Msa1342840:CDS | 45.0% | |
| AAGAAATCGTGTCAAGAGCG+GGG | + | tig0006056:80508-80527 | Msa1342840:CDS | 45.0% | |
| !! | CAGGTTTTGTGCAGGGATGA+CGG | + | tig0006056:79481-79500 | Msa1342840:CDS | 50.0% |
| ! | TTTGTGCAGGGATGACGGTT+TGG | + | tig0006056:79486-79505 | Msa1342840:CDS | 50.0% |
| ! | TTGTGCAGGGATGACGGTTT+GGG | + | tig0006056:79487-79506 | Msa1342840:CDS | 50.0% |
| CATGAGTTGCGCCACATCAA+AGG | - | tig0006056:79545-79564 | None:intergenic | 50.0% | |
| GGCGCAACTCATGAAATTGG+TGG | + | tig0006056:79552-79571 | Msa1342840:CDS | 50.0% | |
| !! | CAGGTGCTATTAGCTGGTGT+TGG | + | tig0006056:79806-79825 | Msa1342840:intron | 50.0% |
| TGGATACCCGAACCTTTGCT+TGG | - | tig0006056:80409-80428 | None:intergenic | 50.0% | |
| ! | GAGTGAACACGGTTGATGCT+TGG | - | tig0006056:80472-80491 | None:intergenic | 50.0% |
| CTCGTATCACTCTTCACCCA+CGG | - | tig0006056:80545-80564 | None:intergenic | 50.0% | |
| !! | CAGGTTTTGTGCAGGGATGA+CGG | + | tig0006056:79481-79500 | Msa1342840:CDS | 50.0% |
| ! | TTTGTGCAGGGATGACGGTT+TGG | + | tig0006056:79486-79505 | Msa1342840:CDS | 50.0% |
| ! | TTGTGCAGGGATGACGGTTT+GGG | + | tig0006056:79487-79506 | Msa1342840:CDS | 50.0% |
| CATGAGTTGCGCCACATCAA+AGG | - | tig0006056:79545-79564 | None:intergenic | 50.0% | |
| GGCGCAACTCATGAAATTGG+TGG | + | tig0006056:79552-79571 | Msa1342840:CDS | 50.0% | |
| !! | CAGGTGCTATTAGCTGGTGT+TGG | + | tig0006056:79806-79825 | Msa1342840:intron | 50.0% |
| TGGATACCCGAACCTTTGCT+TGG | - | tig0006056:80409-80428 | None:intergenic | 50.0% | |
| ! | GAGTGAACACGGTTGATGCT+TGG | - | tig0006056:80472-80491 | None:intergenic | 50.0% |
| CTCGTATCACTCTTCACCCA+CGG | - | tig0006056:80545-80564 | None:intergenic | 50.0% | |
| ! | TGTGCAGGGATGACGGTTTG+GGG | + | tig0006056:79488-79507 | Msa1342840:CDS | 55.0% |
| CGTGGGTGAAGAGTGATACG+AGG | + | tig0006056:80543-80562 | Msa1342840:CDS | 55.0% | |
| ! | TGTGCAGGGATGACGGTTTG+GGG | + | tig0006056:79488-79507 | Msa1342840:CDS | 55.0% |
| CGTGGGTGAAGAGTGATACG+AGG | + | tig0006056:80543-80562 | Msa1342840:CDS | 55.0% | |
| CGTGTCAAGAGCGGGGTTCT+TGG | + | tig0006056:80515-80534 | Msa1342840:CDS | 60.0% | |
| CGGGGTTCTTGGAACACCGT+GGG | + | tig0006056:80526-80545 | Msa1342840:CDS | 60.0% | |
| CGTGTCAAGAGCGGGGTTCT+TGG | + | tig0006056:80515-80534 | Msa1342840:CDS | 60.0% | |
| CGGGGTTCTTGGAACACCGT+GGG | + | tig0006056:80526-80545 | Msa1342840:CDS | 60.0% | |
| GCGGGGTTCTTGGAACACCG+TGG | + | tig0006056:80525-80544 | Msa1342840:CDS | 65.0% | |
| GCGGGGTTCTTGGAACACCG+TGG | + | tig0006056:80525-80544 | Msa1342840:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0006056 | gene | 79431 | 80592 | 79431 | ID=Msa1342840;Name=Msa1342840 |
| tig0006056 | mRNA | 79431 | 80592 | 79431 | ID=Msa1342840-mRNA-1;Parent=Msa1342840;Name=Msa1342840-mRNA-1;_AED=0.59;_eAED=0.59;_QI=11|0|0.33|0.33|1|1|3|0|114 |
| tig0006056 | exon | 79431 | 79592 | 79431 | ID=Msa1342840-mRNA-1:exon:3803;Parent=Msa1342840-mRNA-1 |
| tig0006056 | exon | 80299 | 80335 | 80299 | ID=Msa1342840-mRNA-1:exon:3804;Parent=Msa1342840-mRNA-1 |
| tig0006056 | exon | 80436 | 80592 | 80436 | ID=Msa1342840-mRNA-1:exon:3805;Parent=Msa1342840-mRNA-1 |
| tig0006056 | five_prime_UTR | 79431 | 79441 | 79431 | ID=Msa1342840-mRNA-1:five_prime_utr;Parent=Msa1342840-mRNA-1 |
| tig0006056 | CDS | 79442 | 79592 | 79442 | ID=Msa1342840-mRNA-1:cds;Parent=Msa1342840-mRNA-1 |
| tig0006056 | CDS | 80299 | 80335 | 80299 | ID=Msa1342840-mRNA-1:cds;Parent=Msa1342840-mRNA-1 |
| tig0006056 | CDS | 80436 | 80592 | 80436 | ID=Msa1342840-mRNA-1:cds;Parent=Msa1342840-mRNA-1 |
| Gene Sequence |
| Protein sequence |
