AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0365110


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0365110 MtrunA17_Chr3g0129351 96.096 333 13 0 1 333 1 333 0.0 661
Msa0365110 MtrunA17_Chr7g0263181 37.367 281 151 6 60 324 100 371 1.09e-51 175
Msa0365110 MtrunA17_Chr8g0375201 38.743 191 117 0 115 305 107 297 1.26e-41 147
Msa0365110 MtrunA17_Chr1g0182131 33.333 210 134 4 104 310 132 338 2.96e-26 107
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0365110 AT4G39470.1 54.513 277 120 2 62 333 66 341 6.31e-103 306
Msa0365110 AT3G18420.1 36.992 246 142 4 74 306 55 300 2.50e-42 149
Msa0365110 AT2G37400.1 39.896 193 115 1 123 314 129 321 9.99e-38 137
Msa0365110 AT3G53560.1 40.000 195 112 2 123 314 129 321 2.38e-37 137
Msa0365110 AT3G53560.2 39.320 206 119 3 112 314 167 369 4.91e-37 137
Msa0365110 AT5G02590.1 39.691 194 115 2 115 307 120 312 5.64e-37 135
Msa0365110 AT3G09490.1 35.814 215 130 3 92 303 84 293 1.68e-30 118

Find 89 sgRNAs with CRISPR-Local

Find 209 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AGGATTGTATTTGGAAATTT+TGG 0.111951 3_1:+58884003 Msa0365110:CDS
TGTTGATTCAGCTGAAATTT+TGG 0.183578 3_1:+58883784 Msa0365110:CDS
TAAGGCTAAAGGATTGTATT+TGG 0.219222 3_1:+58883994 Msa0365110:CDS
AACAAGTGCATAGTGATAAA+TGG 0.231649 3_1:-58883610 None:intergenic
AATTCCTTCTGAAACTTTAC+TGG 0.241171 3_1:-58885846 None:intergenic
ATACAGTCTTCTAGATAAAA+AGG 0.263949 3_1:+58885719 Msa0365110:CDS
AACTTTCTCCTATGGTGTTT+GGG 0.282658 3_1:-58886646 None:intergenic
GAACTTTCTCCTATGGTGTT+TGG 0.306676 3_1:-58886647 None:intergenic
AAGCAATCTGAATTGTGAAT+TGG 0.312107 3_1:+58886723 Msa0365110:three_prime_UTR
AAAATTGTGGAGGGTGTTAA+TGG 0.334111 3_1:-58883641 None:intergenic
AGAAGGGAATTGGGGAGATA+TGG 0.336995 3_1:-58883518 None:intergenic
TGGTTGTGTATGGGAAAATT+AGG 0.344777 3_1:+58883855 Msa0365110:CDS
GTGTGCTTTGCAGGGTGATT+TGG 0.355123 3_1:+58885427 Msa0365110:intron
CCCTTCTGTGGAAACTCTTC+AGG 0.358106 3_1:-58885783 None:intergenic
AGCCTCCACTCAACCTCATT+TGG 0.359412 3_1:-58883932 None:intergenic
TCGTGGCAAAAGAAGGGAAT+TGG 0.399875 3_1:-58883528 None:intergenic
CGTGGCAAAAGAAGGGAATT+GGG 0.418032 3_1:-58883527 None:intergenic
GAATTGGGATAGATATGTTA+TGG 0.437245 3_1:+58886739 Msa0365110:three_prime_UTR
GCAGGAAAGTGCAGATCAAT+TGG 0.442466 3_1:-58886579 None:intergenic
AGCAATCTGAATTGTGAATT+GGG 0.443446 3_1:+58886724 Msa0365110:three_prime_UTR
TGATGACCAGATTGGTTACC+AGG 0.455806 3_1:-58886684 None:intergenic
TATTTACTTGATGACCAGAT+TGG 0.467712 3_1:-58886692 None:intergenic
ACAAGTGCATAGTGATAAAT+GGG 0.468344 3_1:-58883609 None:intergenic
GCTCTTAAAGTGGTTGTGTA+TGG 0.470707 3_1:+58883845 Msa0365110:CDS
TTGCAGGGTGATTTGGAGGA+GGG 0.472903 3_1:+58885434 Msa0365110:intron
TTACGGAGGAGAGAAATATA+AGG 0.473332 3_1:+58885265 Msa0365110:CDS
TACGAATTCGTGGCAAAAGA+AGG 0.481369 3_1:-58883535 None:intergenic
TTTGCAGGGTGATTTGGAGG+AGG 0.482427 3_1:+58885433 Msa0365110:intron
GGTTGAAGTGAAATTGATAA+GGG 0.483895 3_1:-58883569 None:intergenic
AGTGAACCTGGTAACCAATC+TGG 0.485601 3_1:+58886678 Msa0365110:three_prime_UTR
TGCACAAATGCGTGTTGTAC+AGG 0.487235 3_1:+58885296 Msa0365110:CDS
TGCTTTGCAGGGTGATTTGG+AGG 0.487354 3_1:+58885430 Msa0365110:intron
AAAAGAGTGTAAAATCAATT+GGG 0.495076 3_1:-58886768 None:intergenic
GATATCACCTTAGCAGCAAA+AGG 0.497307 3_1:+58885816 Msa0365110:CDS
TTCAGCATTTCAAATACAGC+AGG 0.497693 3_1:-58885207 None:intergenic
GACAATGGGGTATTTGAGTA+AGG 0.500527 3_1:+58883976 Msa0365110:CDS
CTCTTAAAGTGGTTGTGTAT+GGG 0.502104 3_1:+58883846 Msa0365110:CDS
GATCCGCTGATGCGAGTCAA+GGG 0.502120 3_1:+58886543 Msa0365110:three_prime_UTR
AAGCTGAGAAGTTTGTGAAG+AGG 0.509773 3_1:+58883894 Msa0365110:CDS
CCAAGCTGAACTTTCTCCTA+TGG 0.510025 3_1:-58886654 None:intergenic
TGGTTGAAGTGAAATTGATA+AGG 0.510289 3_1:-58883570 None:intergenic
AATTGGGATAGATATGTTAT+GGG 0.523293 3_1:+58886740 Msa0365110:three_prime_UTR
ATTCCTTCTGAAACTTTACT+GGG 0.524396 3_1:-58885845 None:intergenic
GGATCCGCTGATGCGAGTCA+AGG 0.534583 3_1:+58886542 Msa0365110:three_prime_UTR
AAACTCACCTGGCAAAGATA+AGG 0.536373 3_1:-58885506 None:intergenic
GGGTATTTGAGTAAGGCTAA+AGG 0.536389 3_1:+58883983 Msa0365110:CDS
GCATTGTGTTATGAGACAAT+GGG 0.536548 3_1:+58883962 Msa0365110:CDS
AAACACAGTTGTTGTCAAAG+AGG 0.536808 3_1:+58886613 Msa0365110:three_prime_UTR
GCCTGAAGAGTTTCCACAGA+AGG 0.536929 3_1:+58885782 Msa0365110:CDS
GTTCAGCTTGGTAGTGAACC+TGG 0.541102 3_1:+58886666 Msa0365110:three_prime_UTR
AAATGTTGAGGCTCTTAAAG+TGG 0.543541 3_1:+58883835 Msa0365110:CDS
GGATAGATATGTTATGGGAT+AGG 0.544147 3_1:+58886745 Msa0365110:three_prime_UTR
TATTAATGAAAACAAAGTTA+CGG 0.545367 3_1:+58885248 Msa0365110:CDS
GGTACTGAAACTGCAAAAGC+GGG 0.549723 3_1:-58883758 None:intergenic
TAGTCTTTCCCAAACACCAT+AGG 0.557118 3_1:+58886638 Msa0365110:three_prime_UTR
CCTGAAGAGTTTCCACAGAA+GGG 0.557973 3_1:+58885783 Msa0365110:CDS
AAGTTGGTTAAAGTTGTTTG+AGG 0.558821 3_1:-58883668 None:intergenic
GGAGGGTGTTAATGGAGTGC+GGG 0.560063 3_1:-58883633 None:intergenic
TGCATTGTGTTATGAGACAA+TGG 0.562265 3_1:+58883961 Msa0365110:CDS
GATTGATGAGGAACCAAATG+AGG 0.565692 3_1:+58883919 Msa0365110:CDS
TGGAGGGTGTTAATGGAGTG+CGG 0.568184 3_1:-58883634 None:intergenic
TCATCAAGAAATCCCTTCTG+TGG 0.572197 3_1:-58885795 None:intergenic
TTGTTGCAGATACGAATTCG+TGG 0.574634 3_1:-58883545 None:intergenic
TGAAGAGCTCTAACAAGAAG+AGG 0.582607 3_1:-58884034 None:intergenic
AGGAACCAAATGAGGTTGAG+TGG 0.584513 3_1:+58883927 Msa0365110:CDS
ACGAATTCGTGGCAAAAGAA+GGG 0.586466 3_1:-58883534 None:intergenic
AACCCCTTGACTCGCATCAG+CGG 0.589559 3_1:-58886546 None:intergenic
ATCCCCAGTAAAGTTTCAGA+AGG 0.590040 3_1:+58885842 Msa0365110:CDS
AGGTACTGAAACTGCAAAAG+CGG 0.602398 3_1:-58883759 None:intergenic
TGTGAAGAGGTTGATTGATG+AGG 0.608344 3_1:+58883907 Msa0365110:CDS
TGTTTGAGGTGAGAAAATTG+TGG 0.610889 3_1:-58883654 None:intergenic
CCATAGGAGAAAGTTCAGCT+TGG 0.621544 3_1:+58886654 Msa0365110:three_prime_UTR
GAAGGATTCAAGAAATGTTG+AGG 0.622010 3_1:+58883823 Msa0365110:CDS
TGTATGGGAAAATTAGGAGA+GGG 0.623027 3_1:+58883861 Msa0365110:CDS
ATTTCAGCTGAATCAACAGA+AGG 0.625556 3_1:-58883779 None:intergenic
TGAGGTGAGAAAATTGTGGA+GGG 0.628555 3_1:-58883650 None:intergenic
ATCCGCTGATGCGAGTCAAG+GGG 0.635859 3_1:+58886544 Msa0365110:three_prime_UTR
GTGTATGGGAAAATTAGGAG+AGG 0.651978 3_1:+58883860 Msa0365110:CDS
AGATAAGGCCTAAAATCTCG+AGG 0.652081 3_1:-58885491 None:intergenic
TTCCTTCTGAAACTTTACTG+GGG 0.652971 3_1:-58885844 None:intergenic
GTGGCAAAAGAAGGGAATTG+GGG 0.656867 3_1:-58883526 None:intergenic
TGTATTTGAAATGCTGAACA+AGG 0.665874 3_1:+58885212 Msa0365110:CDS
TTGAGGTGAGAAAATTGTGG+AGG 0.671928 3_1:-58883651 None:intergenic
ATAGTGATAAATGGGTAGCA+CGG 0.676425 3_1:-58883601 None:intergenic
AACCAAATGAGGTTGAGTGG+AGG 0.677766 3_1:+58883930 Msa0365110:CDS
TAATGAAAACAAAGTTACGG+AGG 0.686188 3_1:+58885251 Msa0365110:CDS
GAGATATGGTTTGAACTCTG+AGG 0.695791 3_1:-58883504 None:intergenic
CTCTGAGGAGATGAAGAGAG+TGG 0.713127 3_1:-58883489 None:intergenic
CATTGTGTTATGAGACAATG+GGG 0.737873 3_1:+58883963 Msa0365110:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TCAAATTTTGATTAGAAATT+TGG + chr3_1:58884180-58884199 Msa0365110:intron 15.0%
!!! TAATACAATTACTATTTTGA+CGG - chr3_1:58885054-58885073 None:intergenic 15.0%
!! TATTAATGAAAACAAAGTTA+CGG + chr3_1:58885248-58885267 Msa0365110:CDS 15.0%
!!! TTATTTTCAAAACAATTTCT+TGG - chr3_1:58886301-58886320 None:intergenic 15.0%
!!! AAAGTTTCATTTTTTCTCAT+TGG + chr3_1:58883701-58883720 Msa0365110:CDS 20.0%
!!! AAGTTTCATTTTTTCTCATT+GGG + chr3_1:58883702-58883721 Msa0365110:CDS 20.0%
!!! TATATCTGTTTTTGTTTTGA+TGG + chr3_1:58884076-58884095 Msa0365110:intron 20.0%
!! TTTGATTATGATTGAAAAGT+TGG + chr3_1:58884130-58884149 Msa0365110:intron 20.0%
!!! ATATGAATGCTTTTTTGTTT+AGG + chr3_1:58884153-58884172 Msa0365110:intron 20.0%
!!! ACTAAGTTGAAAAGAATTTA+TGG - chr3_1:58884324-58884343 None:intergenic 20.0%
!! AATAAAGAGTTAAGAACTTA+GGG - chr3_1:58884636-58884655 None:intergenic 20.0%
!! AAATAAAGAGTTAAGAACTT+AGG - chr3_1:58884637-58884656 None:intergenic 20.0%
!! CAAAACAATATAAGCATAAT+AGG - chr3_1:58884741-58884760 None:intergenic 20.0%
!! TTTATGTGATGAATATTAGA+CGG + chr3_1:58884810-58884829 Msa0365110:intron 20.0%
!!! TAATATAGTTCTGTAAGATA+TGG + chr3_1:58885621-58885640 Msa0365110:intron 20.0%
!! CAATACAATAATTTCATGAA+TGG - chr3_1:58885667-58885686 None:intergenic 20.0%
!!! ATTTTTACCTTTCCTATTTT+TGG - chr3_1:58885890-58885909 None:intergenic 20.0%
!! AATAGGAAAGGTAAAAATAT+AGG + chr3_1:58885892-58885911 Msa0365110:intron 20.0%
!! AATAAAGAACTACTTATTGT+AGG + chr3_1:58886316-58886335 Msa0365110:intron 20.0%
!! AATAGTTGTAGAAAAAAACT+CGG + chr3_1:58886520-58886539 Msa0365110:intron 20.0%
!!! AAAAGAGTGTAAAATCAATT+GGG - chr3_1:58886771-58886790 None:intergenic 20.0%
!!! AAAAAGAGTGTAAAATCAAT+TGG - chr3_1:58886772-58886791 None:intergenic 20.0%
!! TTTTCGTCATTCATTCAAAA+TGG + chr3_1:58883451-58883470 Msa0365110:exon 25.0%
!! AACTTTTTGTGAAATGAAGT+TGG - chr3_1:58883687-58883706 None:intergenic 25.0%
!! AGGATTGTATTTGGAAATTT+TGG + chr3_1:58884003-58884022 Msa0365110:CDS 25.0%
!!! ATTTGGAAATTTTGGAGAAT+TGG + chr3_1:58884011-58884030 Msa0365110:CDS 25.0%
! TTTGATGGAATTATGAATGT+TGG + chr3_1:58884091-58884110 Msa0365110:intron 25.0%
!!! ACATTGATAATTGTTGACTT+AGG + chr3_1:58884216-58884235 Msa0365110:intron 25.0%
!!! CATTGATAATTGTTGACTTA+GGG + chr3_1:58884217-58884236 Msa0365110:intron 25.0%
!!! TAGTTGTGAGAATGTTTTAA+AGG + chr3_1:58884272-58884291 Msa0365110:intron 25.0%
!!! AGTTGTGAGAATGTTTTAAA+GGG + chr3_1:58884273-58884292 Msa0365110:intron 25.0%
! ATGCAATCATATTTGCATAA+AGG - chr3_1:58884585-58884604 None:intergenic 25.0%
!! TAAAACCCATGTATGAATTT+TGG + chr3_1:58884683-58884702 Msa0365110:intron 25.0%
! AACATCCAAAATTCATACAT+GGG - chr3_1:58884691-58884710 None:intergenic 25.0%
! TCACATAAATTTACAATCAC+AGG - chr3_1:58884799-58884818 None:intergenic 25.0%
! AATTGTCAAAATAACAGCTA+TGG + chr3_1:58884852-58884871 Msa0365110:intron 25.0%
! AATCTGAATCCAAAGTAAAA+TGG - chr3_1:58884950-58884969 None:intergenic 25.0%
!!! GTCTTTTTGGAGTAATTATT+TGG + chr3_1:58885390-58885409 Msa0365110:intron 25.0%
! AGAACAAAAATTAAAGTCAG+AGG - chr3_1:58885561-58885580 None:intergenic 25.0%
! ATGTTAAAAGAATATGTTGC+AGG + chr3_1:58885689-58885708 Msa0365110:intron 25.0%
! TGTTAAAAGAATATGTTGCA+GGG + chr3_1:58885690-58885709 Msa0365110:intron 25.0%
! ATACAGTCTTCTAGATAAAA+AGG + chr3_1:58885719-58885738 Msa0365110:CDS 25.0%
!! TCAATTTTCTGACCAAAAAT+AGG + chr3_1:58885875-58885894 Msa0365110:CDS 25.0%
!!! TGTGTTTCACATTTTTAAGT+AGG + chr3_1:58886151-58886170 Msa0365110:intron 25.0%
! AGGATTAGAAAGAATAAAAG+AGG + chr3_1:58886336-58886355 Msa0365110:intron 25.0%
! GGATTAGAAAGAATAAAAGA+GGG + chr3_1:58886337-58886356 Msa0365110:intron 25.0%
! ATAGTTGTAGAAAAAAACTC+GGG + chr3_1:58886521-58886540 Msa0365110:intron 25.0%
! AATTGGGATAGATATGTTAT+GGG + chr3_1:58886740-58886759 Msa0365110:three_prime_UTR 25.0%
!! AGTAGATTAAAAAGCATATG+CGG - chr3_1:58886797-58886816 None:intergenic 25.0%
GGTTGAAGTGAAATTGATAA+GGG - chr3_1:58883572-58883591 None:intergenic 30.0%
TGGTTGAAGTGAAATTGATA+AGG - chr3_1:58883573-58883592 None:intergenic 30.0%
ACAAGTGCATAGTGATAAAT+GGG - chr3_1:58883612-58883631 None:intergenic 30.0%
AACAAGTGCATAGTGATAAA+TGG - chr3_1:58883613-58883632 None:intergenic 30.0%
! AAGTTGGTTAAAGTTGTTTG+AGG - chr3_1:58883671-58883690 None:intergenic 30.0%
!!! TGTTGATTCAGCTGAAATTT+TGG + chr3_1:58883784-58883803 Msa0365110:CDS 30.0%
!! AATTTTGGAGGAGAAGATTT+TGG + chr3_1:58883799-58883818 Msa0365110:CDS 30.0%
TAAGGCTAAAGGATTGTATT+TGG + chr3_1:58883994-58884013 Msa0365110:CDS 30.0%
AATATGATTGCATGTTGACA+TGG + chr3_1:58884592-58884611 Msa0365110:intron 30.0%
CAACATCCAAAATTCATACA+TGG - chr3_1:58884692-58884711 None:intergenic 30.0%
TTGAGCCTTAGTATGTATTT+CGG + chr3_1:58884766-58884785 Msa0365110:intron 30.0%
TACTTTGGATTCAGATTTGA+AGG + chr3_1:58884953-58884972 Msa0365110:intron 30.0%
! GGTAAATTGATTTCATGACA+TGG - chr3_1:58885082-58885101 None:intergenic 30.0%
TGTCATGAAATCAATTTACC+AGG + chr3_1:58885082-58885101 Msa0365110:intron 30.0%
! TGTATTTGAAATGCTGAACA+AGG + chr3_1:58885212-58885231 Msa0365110:CDS 30.0%
TAATGAAAACAAAGTTACGG+AGG + chr3_1:58885251-58885270 Msa0365110:CDS 30.0%
! AACCATGAACAATGTCTTTT+TGG + chr3_1:58885377-58885396 Msa0365110:intron 30.0%
! ATCAAAATCCTCGAGATTTT+AGG + chr3_1:58885483-58885502 Msa0365110:CDS 30.0%
!! ATTCCTTCTGAAACTTTACT+GGG - chr3_1:58885848-58885867 None:intergenic 30.0%
!! AATTCCTTCTGAAACTTTAC+TGG - chr3_1:58885849-58885868 None:intergenic 30.0%
TTTCTGACCAAAAATAGGAA+AGG + chr3_1:58885880-58885899 Msa0365110:exon 30.0%
TAAAGTAAGATGTAGACAAG+AGG + chr3_1:58886015-58886034 Msa0365110:intron 30.0%
AAAGTAAGATGTAGACAAGA+GGG + chr3_1:58886016-58886035 Msa0365110:intron 30.0%
TCATAGCATTTCTCAATCAA+CGG - chr3_1:58886218-58886237 None:intergenic 30.0%
AGAAATGCTATGAGAAATGT+TGG + chr3_1:58886225-58886244 Msa0365110:intron 30.0%
TCAATGACTCTATTGTAGAA+GGG - chr3_1:58886384-58886403 None:intergenic 30.0%
ATCAATGACTCTATTGTAGA+AGG - chr3_1:58886385-58886404 None:intergenic 30.0%
! AGGACACAATTAATTTTGAG+GGG - chr3_1:58886467-58886486 None:intergenic 30.0%
! GAGGACACAATTAATTTTGA+GGG - chr3_1:58886468-58886487 None:intergenic 30.0%
! TGAGGACACAATTAATTTTG+AGG - chr3_1:58886469-58886488 None:intergenic 30.0%
CAAAATTAATTGTGTCCTCA+AGG + chr3_1:58886469-58886488 Msa0365110:intron 30.0%
TTTAATAGATTGCAACCTTG+AGG - chr3_1:58886487-58886506 None:intergenic 30.0%
!!! AACAACTGTGTTTTGATAAG+TGG - chr3_1:58886606-58886625 None:intergenic 30.0%
! TATTTACTTGATGACCAGAT+TGG - chr3_1:58886695-58886714 None:intergenic 30.0%
AAGCAATCTGAATTGTGAAT+TGG + chr3_1:58886723-58886742 Msa0365110:three_prime_UTR 30.0%
AGCAATCTGAATTGTGAATT+GGG + chr3_1:58886724-58886743 Msa0365110:three_prime_UTR 30.0%
GAATTGGGATAGATATGTTA+TGG + chr3_1:58886739-58886758 Msa0365110:three_prime_UTR 30.0%
ATAGTGATAAATGGGTAGCA+CGG - chr3_1:58883604-58883623 None:intergenic 35.0%
!! AAAATTGTGGAGGGTGTTAA+TGG - chr3_1:58883644-58883663 None:intergenic 35.0%
! TGTTTGAGGTGAGAAAATTG+TGG - chr3_1:58883657-58883676 None:intergenic 35.0%
ATTTCAGCTGAATCAACAGA+AGG - chr3_1:58883782-58883801 None:intergenic 35.0%
! TGATTCAGCTGAAATTTTGG+AGG + chr3_1:58883787-58883806 Msa0365110:CDS 35.0%
GAAGGATTCAAGAAATGTTG+AGG + chr3_1:58883823-58883842 Msa0365110:CDS 35.0%
AAATGTTGAGGCTCTTAAAG+TGG + chr3_1:58883835-58883854 Msa0365110:CDS 35.0%
CTCTTAAAGTGGTTGTGTAT+GGG + chr3_1:58883846-58883865 Msa0365110:CDS 35.0%
TGGTTGTGTATGGGAAAATT+AGG + chr3_1:58883855-58883874 Msa0365110:CDS 35.0%
TGTATGGGAAAATTAGGAGA+GGG + chr3_1:58883861-58883880 Msa0365110:CDS 35.0%
TGCATTGTGTTATGAGACAA+TGG + chr3_1:58883961-58883980 Msa0365110:CDS 35.0%
GCATTGTGTTATGAGACAAT+GGG + chr3_1:58883962-58883981 Msa0365110:CDS 35.0%
CATTGTGTTATGAGACAATG+GGG + chr3_1:58883963-58883982 Msa0365110:CDS 35.0%
! AAACAAGTTGTGTTGCTGAT+TGG + chr3_1:58884483-58884502 Msa0365110:intron 35.0%
! GATTGGTAATCATGGCTATT+AGG + chr3_1:58884500-58884519 Msa0365110:intron 35.0%
TGAGCCTTAGTATGTATTTC+GGG + chr3_1:58884767-58884786 Msa0365110:intron 35.0%
TCTTCCCGAAATACATACTA+AGG - chr3_1:58884774-58884793 None:intergenic 35.0%
TTAGTATGTATTTCGGGAAG+AGG + chr3_1:58884773-58884792 Msa0365110:intron 35.0%
! AACTGTGCAGTGTTGTTAAA+TGG + chr3_1:58884880-58884899 Msa0365110:intron 35.0%
! TGAACACCACCATTTTACTT+TGG + chr3_1:58884938-58884957 Msa0365110:intron 35.0%
CTGAATCCAAAGTAAAATGG+TGG - chr3_1:58884947-58884966 None:intergenic 35.0%
TTTGGATTCAGATTTGAAGG+TGG + chr3_1:58884956-58884975 Msa0365110:intron 35.0%
TTTGCTAGATGCTTCTTTGA+CGG + chr3_1:58884979-58884998 Msa0365110:intron 35.0%
!!! ACTATTTTGACGGCATTTTG+TGG - chr3_1:58885044-58885063 None:intergenic 35.0%
AACAAACAAATTGAGTGTCC+TGG - chr3_1:58885103-58885122 None:intergenic 35.0%
! AGTGATACTCTCTTTTCTAC+AGG + chr3_1:58885149-58885168 Msa0365110:intron 35.0%
! GTGATACTCTCTTTTCTACA+GGG + chr3_1:58885150-58885169 Msa0365110:intron 35.0%
GTGATGCACAAAAACAATGA+GGG + chr3_1:58885183-58885202 Msa0365110:CDS 35.0%
TTCAGCATTTCAAATACAGC+AGG - chr3_1:58885210-58885229 None:intergenic 35.0%
TTACGGAGGAGAGAAATATA+AGG + chr3_1:58885265-58885284 Msa0365110:CDS 35.0%
AACTCGTAGTAGATAAGCAA+AGG - chr3_1:58885350-58885369 None:intergenic 35.0%
CTCCAAAAAGACATTGTTCA+TGG - chr3_1:58885382-58885401 None:intergenic 35.0%
ATAACATATGTGTGCTTTGC+AGG + chr3_1:58885418-58885437 Msa0365110:intron 35.0%
TAACATATGTGTGCTTTGCA+GGG + chr3_1:58885419-58885438 Msa0365110:intron 35.0%
CAGTCTTCTAGATAAAAAGG+AGG + chr3_1:58885722-58885741 Msa0365110:CDS 35.0%
!! TTCCTTCTGAAACTTTACTG+GGG - chr3_1:58885847-58885866 None:intergenic 35.0%
ACTAACAACACACTCTTGTT+AGG + chr3_1:58886273-58886292 Msa0365110:intron 35.0%
TTCCCTTTATTCTAATGTCC+TGG + chr3_1:58886432-58886451 Msa0365110:intron 35.0%
CACCAGGACATTAGAATAAA+GGG - chr3_1:58886437-58886456 None:intergenic 35.0%
TCACCAGGACATTAGAATAA+AGG - chr3_1:58886438-58886457 None:intergenic 35.0%
AAACACAGTTGTTGTCAAAG+AGG + chr3_1:58886613-58886632 Msa0365110:three_prime_UTR 35.0%
AACTTTCTCCTATGGTGTTT+GGG - chr3_1:58886649-58886668 None:intergenic 35.0%
GGATAGATATGTTATGGGAT+AGG + chr3_1:58886745-58886764 Msa0365110:three_prime_UTR 35.0%
GAGATATGGTTTGAACTCTG+AGG - chr3_1:58883507-58883526 None:intergenic 40.0%
ACGAATTCGTGGCAAAAGAA+GGG - chr3_1:58883537-58883556 None:intergenic 40.0%
TACGAATTCGTGGCAAAAGA+AGG - chr3_1:58883538-58883557 None:intergenic 40.0%
TTGTTGCAGATACGAATTCG+TGG - chr3_1:58883548-58883567 None:intergenic 40.0%
TGAGGTGAGAAAATTGTGGA+GGG - chr3_1:58883653-58883672 None:intergenic 40.0%
TTGAGGTGAGAAAATTGTGG+AGG - chr3_1:58883654-58883673 None:intergenic 40.0%
!! AGGTACTGAAACTGCAAAAG+CGG - chr3_1:58883762-58883781 None:intergenic 40.0%
GCTCTTAAAGTGGTTGTGTA+TGG + chr3_1:58883845-58883864 Msa0365110:CDS 40.0%
GTGTATGGGAAAATTAGGAG+AGG + chr3_1:58883860-58883879 Msa0365110:CDS 40.0%
AAGCTGAGAAGTTTGTGAAG+AGG + chr3_1:58883894-58883913 Msa0365110:CDS 40.0%
! TGTGAAGAGGTTGATTGATG+AGG + chr3_1:58883907-58883926 Msa0365110:CDS 40.0%
GATTGATGAGGAACCAAATG+AGG + chr3_1:58883919-58883938 Msa0365110:CDS 40.0%
! GACAATGGGGTATTTGAGTA+AGG + chr3_1:58883976-58883995 Msa0365110:CDS 40.0%
GGGTATTTGAGTAAGGCTAA+AGG + chr3_1:58883983-58884002 Msa0365110:CDS 40.0%
! TGAAGAGCTCTAACAAGAAG+AGG - chr3_1:58884037-58884056 None:intergenic 40.0%
!! TTGTTGACTTAGGGTCTGTT+TGG + chr3_1:58884226-58884245 Msa0365110:intron 40.0%
AAGTTATCGCGAAGAGCTTA+TGG - chr3_1:58884348-58884367 None:intergenic 40.0%
! GTGTTGCTGATTGGTAATCA+TGG + chr3_1:58884492-58884511 Msa0365110:intron 40.0%
TATGACGCTTGTCAAAACAC+CGG - chr3_1:58884917-58884936 None:intergenic 40.0%
! ACTCTCTTTTCTACAGGGTT+TGG + chr3_1:58885155-58885174 Msa0365110:intron 40.0%
! TTTTCTACAGGGTTTGGCTA+TGG + chr3_1:58885161-58885180 Msa0365110:intron 40.0%
GGTGATGCACAAAAACAATG+AGG + chr3_1:58885182-58885201 Msa0365110:CDS 40.0%
AGATAAGGCCTAAAATCTCG+AGG - chr3_1:58885494-58885513 None:intergenic 40.0%
!! TTTTAGGCCTTATCTTTGCC+AGG + chr3_1:58885499-58885518 Msa0365110:CDS 40.0%
AAACTCACCTGGCAAAGATA+AGG - chr3_1:58885509-58885528 None:intergenic 40.0%
GATTTGCATACAAACTCACC+TGG - chr3_1:58885520-58885539 None:intergenic 40.0%
TCATCAAGAAATCCCTTCTG+TGG - chr3_1:58885798-58885817 None:intergenic 40.0%
GATATCACCTTAGCAGCAAA+AGG + chr3_1:58885816-58885835 Msa0365110:CDS 40.0%
ATCCCCAGTAAAGTTTCAGA+AGG + chr3_1:58885842-58885861 Msa0365110:CDS 40.0%
AGCACATCACACTCTTGTAA+AGG + chr3_1:58885963-58885982 Msa0365110:intron 40.0%
TGTAGAAGGGAAACCCATAA+AGG - chr3_1:58886371-58886390 None:intergenic 40.0%
TAGTCTTTCCCAAACACCAT+AGG + chr3_1:58886638-58886657 Msa0365110:three_prime_UTR 40.0%
GAACTTTCTCCTATGGTGTT+TGG - chr3_1:58886650-58886669 None:intergenic 40.0%
AGAAGGGAATTGGGGAGATA+TGG - chr3_1:58883521-58883540 None:intergenic 45.0%
GTGGCAAAAGAAGGGAATTG+GGG - chr3_1:58883529-58883548 None:intergenic 45.0%
CGTGGCAAAAGAAGGGAATT+GGG - chr3_1:58883530-58883549 None:intergenic 45.0%
TCGTGGCAAAAGAAGGGAAT+TGG - chr3_1:58883531-58883550 None:intergenic 45.0%
! TGGGTAGCACGGAATTTTGA+TGG - chr3_1:58883593-58883612 None:intergenic 45.0%
! GGTACTGAAACTGCAAAAGC+GGG - chr3_1:58883761-58883780 None:intergenic 45.0%
!! GGAGGAGAAGATTTTGGAGA+AGG + chr3_1:58883805-58883824 Msa0365110:CDS 45.0%
AGGAACCAAATGAGGTTGAG+TGG + chr3_1:58883927-58883946 Msa0365110:CDS 45.0%
AACCAAATGAGGTTGAGTGG+AGG + chr3_1:58883930-58883949 Msa0365110:CDS 45.0%
GATGAATATTAGACGGCGCT+AGG + chr3_1:58884817-58884836 Msa0365110:intron 45.0%
! GCTTCTTTGACGGCATTTTG+TGG + chr3_1:58884989-58885008 Msa0365110:intron 45.0%
TGCACAAATGCGTGTTGTAC+AGG + chr3_1:58885296-58885315 Msa0365110:CDS 45.0%
CCTGAAGAGTTTCCACAGAA+GGG + chr3_1:58885783-58885802 Msa0365110:CDS 45.0%
! GGATGTTCCTTTTGCTGCTA+AGG - chr3_1:58885826-58885845 None:intergenic 45.0%
! AGATGTAGACAAGAGGGTAC+TGG + chr3_1:58886022-58886041 Msa0365110:intron 45.0%
CTCCAAACCATGCACTACAA+GGG - chr3_1:58886092-58886111 None:intergenic 45.0%
ACTCCAAACCATGCACTACA+AGG - chr3_1:58886093-58886112 None:intergenic 45.0%
! AGTCCGAGATTTTGCTTGTC+TGG + chr3_1:58886110-58886129 Msa0365110:intron 45.0%
GAGCCAGACAAGCAAAATCT+CGG - chr3_1:58886116-58886135 None:intergenic 45.0%
AGAGGGAGATCTCTCCTTTA+TGG + chr3_1:58886354-58886373 Msa0365110:intron 45.0%
GAGGGAGATCTCTCCTTTAT+GGG + chr3_1:58886355-58886374 Msa0365110:intron 45.0%
TTTGAGGGGATTGTATCACC+AGG - chr3_1:58886453-58886472 None:intergenic 45.0%
! GCAGGAAAGTGCAGATCAAT+TGG - chr3_1:58886582-58886601 None:intergenic 45.0%
!!! TGTGTTTTGATAAGTGGCGC+AGG - chr3_1:58886600-58886619 None:intergenic 45.0%
CCAAGCTGAACTTTCTCCTA+TGG - chr3_1:58886657-58886676 None:intergenic 45.0%
CCATAGGAGAAAGTTCAGCT+TGG + chr3_1:58886654-58886673 Msa0365110:three_prime_UTR 45.0%
AGTGAACCTGGTAACCAATC+TGG + chr3_1:58886678-58886697 Msa0365110:three_prime_UTR 45.0%
! TGATGACCAGATTGGTTACC+AGG - chr3_1:58886687-58886706 None:intergenic 45.0%
! CTCTGAGGAGATGAAGAGAG+TGG - chr3_1:58883492-58883511 None:intergenic 50.0%
!! TGGAGGGTGTTAATGGAGTG+CGG - chr3_1:58883637-58883656 None:intergenic 50.0%
AGCCTCCACTCAACCTCATT+TGG - chr3_1:58883935-58883954 None:intergenic 50.0%
GCTTGTCAAAACACCGGTCA+CGG - chr3_1:58884911-58884930 None:intergenic 50.0%
GTGTGCTTTGCAGGGTGATT+TGG + chr3_1:58885427-58885446 Msa0365110:intron 50.0%
! TGCTTTGCAGGGTGATTTGG+AGG + chr3_1:58885430-58885449 Msa0365110:intron 50.0%
! TTTGCAGGGTGATTTGGAGG+AGG + chr3_1:58885433-58885452 Msa0365110:intron 50.0%
! TTGCAGGGTGATTTGGAGGA+GGG + chr3_1:58885434-58885453 Msa0365110:intron 50.0%
GCCTGAAGAGTTTCCACAGA+AGG + chr3_1:58885782-58885801 Msa0365110:CDS 50.0%
CCCTTCTGTGGAAACTCTTC+AGG - chr3_1:58885786-58885805 None:intergenic 50.0%
TTGCTAGCCCTTGTAGTGCA+TGG + chr3_1:58886082-58886101 Msa0365110:intron 50.0%
AGCCCTTGTAGTGCATGGTT+TGG + chr3_1:58886087-58886106 Msa0365110:intron 50.0%
!! GTTCAGCTTGGTAGTGAACC+TGG + chr3_1:58886666-58886685 Msa0365110:three_prime_UTR 50.0%
!! GGAGGGTGTTAATGGAGTGC+GGG - chr3_1:58883636-58883655 None:intergenic 55.0%
TTAAATGGCGACGCCGTGAC+CGG + chr3_1:58884895-58884914 Msa0365110:intron 55.0%
GATCCGCTGATGCGAGTCAA+GGG + chr3_1:58886543-58886562 Msa0365110:three_prime_UTR 55.0%
ATCCGCTGATGCGAGTCAAG+GGG + chr3_1:58886544-58886563 Msa0365110:three_prime_UTR 55.0%
! AACCCCTTGACTCGCATCAG+CGG - chr3_1:58886549-58886568 None:intergenic 55.0%
GGATCCGCTGATGCGAGTCA+AGG + chr3_1:58886542-58886561 Msa0365110:three_prime_UTR 60.0%
Chromosome Type Strat End Strand Name
chr3_1 gene 58883449 58886827 58883449 ID=Msa0365110;Name=Msa0365110
chr3_1 mRNA 58883449 58886827 58883449 ID=Msa0365110-mRNA-1;Parent=Msa0365110;Name=Msa0365110-mRNA-1;_AED=0.12;_eAED=0.12;_QI=21|1|1|1|0.75|0.6|5|302|333
chr3_1 exon 58883449 58884057 58883449 ID=Msa0365110-mRNA-1:exon:11166;Parent=Msa0365110-mRNA-1
chr3_1 exon 58885171 58885317 58885171 ID=Msa0365110-mRNA-1:exon:11167;Parent=Msa0365110-mRNA-1
chr3_1 exon 58885440 58885520 58885440 ID=Msa0365110-mRNA-1:exon:11168;Parent=Msa0365110-mRNA-1
chr3_1 exon 58885711 58885901 58885711 ID=Msa0365110-mRNA-1:exon:11169;Parent=Msa0365110-mRNA-1
chr3_1 exon 58886531 58886827 58886531 ID=Msa0365110-mRNA-1:exon:11170;Parent=Msa0365110-mRNA-1
chr3_1 five_prime_UTR 58883449 58883469 58883449 ID=Msa0365110-mRNA-1:five_prime_utr;Parent=Msa0365110-mRNA-1
chr3_1 CDS 58883470 58884057 58883470 ID=Msa0365110-mRNA-1:cds;Parent=Msa0365110-mRNA-1
chr3_1 CDS 58885171 58885317 58885171 ID=Msa0365110-mRNA-1:cds;Parent=Msa0365110-mRNA-1
chr3_1 CDS 58885440 58885520 58885440 ID=Msa0365110-mRNA-1:cds;Parent=Msa0365110-mRNA-1
chr3_1 CDS 58885711 58885896 58885711 ID=Msa0365110-mRNA-1:cds;Parent=Msa0365110-mRNA-1
chr3_1 three_prime_UTR 58885897 58885901 58885897 ID=Msa0365110-mRNA-1:three_prime_utr;Parent=Msa0365110-mRNA-1
chr3_1 three_prime_UTR 58886531 58886827 58886531 ID=Msa0365110-mRNA-1:three_prime_utr;Parent=Msa0365110-mRNA-1
Gene Sequence

>Msa0365110

ATGGCTTCTACTGCAACAACCACTCTCTTCATCTCCTCAGAGTTCAAACCATATCTCCCCAATTCCCTTCTTTTGCCACGAATTCGTATCTGCAACAAACCCTTATCAATTTCACTTCAACCATCAAAATTCCGTGCTACCCATTTATCACTATGCACTTGTTCCCGCACTCCATTAACACCCTCCACAATTTTCTCACCTCAAACAACTTTAACCAACTTCATTTCACAAAAAGTTTCATTTTTTCTCATTGGGTCGTTCATCTTCATCGCTTACTTCAGCAGAAAACCCGCTTTTGCAGTTTCAGTACCTTCTGTTGATTCAGCTGAAATTTTGGAGGAGAAGATTTTGGAGAAGGATTCAAGAAATGTTGAGGCTCTTAAAGTGGTTGTGTATGGGAAAATTAGGAGAGGGAAGTGTAAAGAAGCTGAGAAGTTTGTGAAGAGGTTGATTGATGAGGAACCAAATGAGGTTGAGTGGAGGCTTTTGCTTGCATTGTGTTATGAGACAATGGGGTATTTGAGTAAGGCTAAAGGATTGTATTTGGAAATTTTGGAGAATTGGCCTCTTCTTGTTAGAGCTCTTCATGGTTTGGCTATGGTGATGCACAAAAACAATGAGGGTCCTGCTGTATTTGAAATGCTGAACAAGGCTCTAGAGTTAGCTATTAATGAAAACAAAGTTACGGAGGAGAGAAATATAAGGATCTTAATTGCACAAATGCGTGTTGTACAGGGTGATTTGGAGGAGGGCTTGAAAAGATGTCAAGATTTGATTGATCAAAATCCTCGAGATTTTAGGCCTTATCTTTGCCAGGGAATAATATACAGTCTTCTAGATAAAAAGGAGGAAGCTGCAAAACAGTTTGAAACATATCAAGCTCTTGTGCCTGAAGAGTTTCCACAGAAGGGATTTCTTGATGATATCACCTTAGCAGCAAAAGGAACATCCCCAGTAAAGTTTCAGAAGGAATTCAGAAATCAATTTTCTGACCAAAAATAG

Protein sequence

>Msa0365110

MASTATTTLFISSEFKPYLPNSLLLPRIRICNKPLSISLQPSKFRATHLSLCTCSRTPLTPSTIFSPQTTLTNFISQKVSFFLIGSFIFIAYFSRKPAFAVSVPSVDSAEILEEKILEKDSRNVEALKVVVYGKIRRGKCKEAEKFVKRLIDEEPNEVEWRLLLALCYETMGYLSKAKGLYLEILENWPLLVRALHGLAMVMHKNNEGPAVFEMLNKALELAINENKVTEERNIRILIAQMRVVQGDLEEGLKRCQDLIDQNPRDFRPYLCQGIIYSLLDKKEEAAKQFETYQALVPEEFPQKGFLDDITLAAKGTSPVKFQKEFRNQFSDQK*