AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0036620


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0036620 MtrunA17_Chr1g0195451 98.649 148 2 0 1 148 309 456 1.58e-102 301
Msa0036620 MtrunA17_Chr3g0138841 35.780 109 56 3 23 131 318 412 4.30e-16 73.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0036620 AT2G47590.1 63.514 148 48 2 1 148 306 447 2.96e-60 192
Msa0036620 AT5G24850.1 30.435 138 71 3 1 127 259 382 9.13e-15 70.5

Find 66 sgRNAs with CRISPR-Local

Find 233 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTGATTATGGAGCATTAATT+AGG 0.204657 1_1:+65217113 None:intergenic
ATCTATGGGTCCAGAATTTA+TGG 0.205391 1_1:-65217310 Msa0036620:three_prime_UTR
AGAAGCTTCAAGTTTGATTA+TGG 0.215901 1_1:+65217100 None:intergenic
CTTAAGCTACAAGTTTCTTA+TGG 0.245703 1_1:-65217530 Msa0036620:exon
TCAGCCAAACAAGGGGTTTA+AGG 0.253932 1_1:-65219708 Msa0036620:CDS
TGCTATGGAGGGACTTCTTT+AGG 0.263132 1_1:-65219411 Msa0036620:intron
CAACCAATTAGTTCCAGTTT+TGG 0.285317 1_1:+65219444 None:intergenic
CATCCAAAACTGGAACTAAT+TGG 0.299631 1_1:-65219447 Msa0036620:CDS
CCTCCTGTCATGGAAGAATT+AGG 0.313996 1_1:+65219782 None:intergenic
ACAGAAACACCCCTTCAATA+AGG 0.315520 1_1:+65217048 None:intergenic
TTGTTCATCTTACTATGTTA+TGG 0.315772 1_1:-65217137 Msa0036620:three_prime_UTR
CCATCCTTAAACCCCTTGTT+TGG 0.330178 1_1:+65219704 None:intergenic
TGAGGAAGAGCCATAAATTC+TGG 0.334279 1_1:+65217300 None:intergenic
TGATTATGGAGCATTAATTA+GGG 0.367147 1_1:+65217114 None:intergenic
GCAATCACATTATATCAATA+TGG 0.374605 1_1:-65217442 Msa0036620:three_prime_UTR
TGCTCCAGCCACTGCTTGTA+CGG 0.374998 1_1:-65217562 Msa0036620:CDS
TCCTCAATAACACGATACTT+TGG 0.396953 1_1:-65217283 Msa0036620:three_prime_UTR
GGGGCACAAGATAGTATATA+TGG 0.403980 1_1:-65219683 Msa0036620:CDS
CCTCAATAACACGATACTTT+GGG 0.412537 1_1:-65217282 Msa0036620:three_prime_UTR
GATGGTGGCTCATCCAAAAC+TGG 0.418194 1_1:-65219457 Msa0036620:CDS
CAGAAACACCCCTTCAATAA+GGG 0.446870 1_1:+65217049 None:intergenic
TATTAGTGTTCCCTTATTGA+AGG 0.449077 1_1:-65217059 Msa0036620:three_prime_UTR
CCAAACAAGGGGTTTAAGGA+TGG 0.450067 1_1:-65219704 Msa0036620:CDS
GCTCCAGCCACTGCTTGTAC+GGG 0.464062 1_1:-65217561 Msa0036620:CDS
ATTAGTGTTCCCTTATTGAA+GGG 0.467319 1_1:-65217058 Msa0036620:three_prime_UTR
TAGTTCTACTAAGAAACAAC+TGG 0.469217 1_1:-65217589 Msa0036620:CDS
AATTTCTCCATGGTTGGCAA+TGG 0.472113 1_1:-65219642 Msa0036620:CDS
ATTTCTCCATGGTTGGCAAT+GGG 0.474742 1_1:-65219641 Msa0036620:CDS
ATGCAAAATTTCTCCATGGT+TGG 0.479998 1_1:-65219648 Msa0036620:CDS
ACAGAGGCTTAAAAGATTTG+CGG 0.483489 1_1:-65219744 Msa0036620:CDS
TTCAGTCTCCCCTCCTGTCA+TGG 0.502535 1_1:+65219772 None:intergenic
GGTTGATGTTTGAGTTGCTA+TGG 0.503481 1_1:-65219426 Msa0036620:CDS
TATTGAAGGGGTGTTTCTGT+TGG 0.519103 1_1:-65217045 Msa0036620:three_prime_UTR
CCCAAAGTATCGTGTTATTG+AGG 0.520052 1_1:+65217282 None:intergenic
CAGCTCATCAAACATTGCGC+GGG 0.522820 1_1:+65219607 None:intergenic
TCCATCTGCCACAATGTCAC+AGG 0.531575 1_1:-65220517 Msa0036620:intron
GTGCCTAATTCTTCCATGAC+AGG 0.539757 1_1:-65219785 Msa0036620:CDS
ACCTGTGACATTGTGGCAGA+TGG 0.543053 1_1:+65220516 None:intergenic
TTTCATGCAAAATTTCTCCA+TGG 0.544798 1_1:-65219652 Msa0036620:CDS
TTAGTGTTCCCTTATTGAAG+GGG 0.546127 1_1:-65217057 Msa0036620:three_prime_UTR
GCACCCGTACAAGCAGTGGC+TGG 0.547932 1_1:+65217558 None:intergenic
CTCATCAAACATTGCGCGGG+GGG 0.548029 1_1:+65219610 None:intergenic
CAAACAAGGGGTTTAAGGAT+GGG 0.554665 1_1:-65219703 Msa0036620:CDS
AGGCATCCCATTGCCAACCA+TGG 0.557353 1_1:+65219635 None:intergenic
AAACAAGGGGTTTAAGGATG+GGG 0.564416 1_1:-65219702 Msa0036620:CDS
TAAGTTGTGAAGAATAAAGG+AGG 0.568916 1_1:-65217175 Msa0036620:three_prime_UTR
GTGTGAAGCTCAGCCAAACA+AGG 0.570307 1_1:-65219717 Msa0036620:CDS
GTCATGGAAGAATTAGGCAC+TGG 0.572317 1_1:+65219788 None:intergenic
AAGCGCACCCGTACAAGCAG+TGG 0.573556 1_1:+65217554 None:intergenic
TCAGCTCATCAAACATTGCG+CGG 0.578227 1_1:+65219606 None:intergenic
AGCTGAAGAAAACTGCAAGC+AGG 0.580374 1_1:-65219589 Msa0036620:intron
GATGTTTGAGTTGCTATGGA+GGG 0.589463 1_1:-65219422 Msa0036620:CDS
TGATGTTTGAGTTGCTATGG+AGG 0.595257 1_1:-65219423 Msa0036620:CDS
AGCTCATCAAACATTGCGCG+GGG 0.598803 1_1:+65219608 None:intergenic
ACATACAACAGAACTTGTGA+AGG 0.600612 1_1:+65217471 None:intergenic
TAATTCTTCCATGACAGGAG+GGG 0.608540 1_1:-65219780 Msa0036620:CDS
ATAGATCTAGTTAGAAAAGA+CGG 0.611599 1_1:+65217327 None:intergenic
CTAATTCTTCCATGACAGGA+GGG 0.619336 1_1:-65219781 Msa0036620:CDS
CCTAATTCTTCCATGACAGG+AGG 0.628725 1_1:-65219782 Msa0036620:CDS
TGTGAAGCTCAGCCAAACAA+GGG 0.637459 1_1:-65219716 Msa0036620:CDS
CATACAACAGAACTTGTGAA+GGG 0.641338 1_1:+65217472 None:intergenic
TGGCAGATGGATTAAGACCA+AGG 0.660136 1_1:+65220529 None:intergenic
ATACAACAGAACTTGTGAAG+GGG 0.661152 1_1:+65217473 None:intergenic
GTGAAGCTCAGCCAAACAAG+GGG 0.683998 1_1:-65219715 Msa0036620:CDS
GGGAGACTGAAGCACTACAG+AGG 0.688139 1_1:-65219760 Msa0036620:CDS
GCTCATCAAACATTGCGCGG+GGG 0.698836 1_1:+65219609 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTTCTGTTTAAAAATATT+AGG - chr1_1:65218024-65218043 Msa0036620:intron 10.0%
!!! AAAGTTATAATTTTCTAATT+AGG + chr1_1:65218292-65218311 None:intergenic 10.0%
!!! AATACATTTTAAAAAAGTTA+TGG + chr1_1:65218413-65218432 None:intergenic 10.0%
!! TAAAATGTATTTAACTAAAA+AGG - chr1_1:65218422-65218441 Msa0036620:intron 10.0%
!!! TTGTAATCATAATATTTTCA+TGG - chr1_1:65217164-65217183 Msa0036620:three_prime_UTR 15.0%
!! TAAGAAATATTATTATGATG+CGG - chr1_1:65219596-65219615 Msa0036620:CDS 15.0%
!! TGTTAAAATCTAATTTGATT+AGG + chr1_1:65219813-65219832 None:intergenic 15.0%
!!! AAGCTTTTTACATTATTTTT+TGG - chr1_1:65220157-65220176 Msa0036620:intron 15.0%
!!! TTTTTACATTATTTTTTGGA+TGG - chr1_1:65220161-65220180 Msa0036620:intron 15.0%
!!! TCTTTGATTAGATTTTATGT+TGG - chr1_1:65217358-65217377 Msa0036620:three_prime_UTR 20.0%
!!! TTTTAAACAGAAAAACATCT+GGG + chr1_1:65218019-65218038 None:intergenic 20.0%
!!! TTTTTAAACAGAAAAACATC+TGG + chr1_1:65218020-65218039 None:intergenic 20.0%
!!! TTTTCTTTTCCCAATATATA+CGG - chr1_1:65218234-65218253 Msa0036620:intron 20.0%
!! TTTATCATAGTAGTTTATGA+TGG - chr1_1:65218329-65218348 Msa0036620:intron 20.0%
!! TTATCATAGTAGTTTATGAT+GGG - chr1_1:65218330-65218349 Msa0036620:intron 20.0%
!!! ACATGTTTAAATCTTTAAAG+AGG + chr1_1:65218597-65218616 None:intergenic 20.0%
!! CGGTTAATTTATTTAACAAT+AGG - chr1_1:65218639-65218658 Msa0036620:intron 20.0%
!! ACATTATTACAAACTAAACT+AGG - chr1_1:65218680-65218699 Msa0036620:intron 20.0%
!!! TTTTGAGTTTTCATTGTATT+AGG - chr1_1:65219096-65219115 Msa0036620:intron 20.0%
!!! TCATTACTTTTAAGATTTGA+TGG - chr1_1:65219387-65219406 Msa0036620:intron 20.0%
!!! CATTACTTTTAAGATTTGAT+GGG - chr1_1:65219388-65219407 Msa0036620:intron 20.0%
!! AAAAGATTTAAATGGTAAGT+AGG - chr1_1:65219422-65219441 Msa0036620:CDS 20.0%
!! AAAGATTTAAATGGTAAGTA+GGG - chr1_1:65219423-65219442 Msa0036620:CDS 20.0%
!! AGATATAGAGAAAATATGAT+CGG + chr1_1:65219555-65219574 None:intergenic 20.0%
!!! ATATTTTTTGGTAATAAACC+TGG + chr1_1:65219968-65219987 None:intergenic 20.0%
!!! CTTAGTAGAACTATATTTTT+TGG + chr1_1:65219980-65219999 None:intergenic 20.0%
!!! TTTTAAGTTGTGAAGAATAA+AGG - chr1_1:65220398-65220417 Msa0036620:intron 20.0%
!!! ATACATTTTATGAGAAGTGT+TGG - chr1_1:65217283-65217302 Msa0036620:three_prime_UTR 25.0%
!!! GTTATGGAATTCAGTTTTAA+TGG - chr1_1:65217398-65217417 Msa0036620:three_prime_UTR 25.0%
! CATCAACAATGAATCTATAT+TGG - chr1_1:65217740-65217759 Msa0036620:intron 25.0%
!! AGAAATTTTGCATGAAAAGT+TGG + chr1_1:65217921-65217940 None:intergenic 25.0%
!! TAGTTTTCTCCGTATATATT+GGG + chr1_1:65218246-65218265 None:intergenic 25.0%
! CCTAATTTAATGAATAAGTC+TGG + chr1_1:65218390-65218409 None:intergenic 25.0%
! CCAGACTTATTCATTAAATT+AGG - chr1_1:65218387-65218406 Msa0036620:intron 25.0%
! TCATATTTACATGAACTAAC+TGG + chr1_1:65218490-65218509 None:intergenic 25.0%
! AAAGAAAAAAAAAAAGCCAG+CGG + chr1_1:65219177-65219196 None:intergenic 25.0%
! AGAACAAAAAGAAGTAGAAA+AGG + chr1_1:65219221-65219240 None:intergenic 25.0%
! CTGTCTGAAAAAGATTTAAA+TGG - chr1_1:65219414-65219433 Msa0036620:CDS 25.0%
! ATTATTATGATGCGGTAAAA+TGG - chr1_1:65219604-65219623 Msa0036620:CDS 25.0%
! TTATTATGATGCGGTAAAAT+GGG - chr1_1:65219605-65219624 Msa0036620:CDS 25.0%
!!! ATTGTTATGGATTTAGTTCT+AGG - chr1_1:65219724-65219743 Msa0036620:CDS 25.0%
!!! TTGTTATGGATTTAGTTCTA+GGG - chr1_1:65219725-65219744 Msa0036620:CDS 25.0%
!! GTGTTTAGTGATAAAAGTTT+TGG + chr1_1:65219906-65219925 None:intergenic 25.0%
! GCAATCACATTATATCAATA+TGG - chr1_1:65220134-65220153 Msa0036620:intron 25.0%
!!! TTCAGAACAACACTTTTTTA+AGG + chr1_1:65220208-65220227 None:intergenic 25.0%
! ATAGATCTAGTTAGAAAAGA+CGG + chr1_1:65220252-65220271 None:intergenic 25.0%
!! TCTTTTCTAACTAGATCTAT+GGG - chr1_1:65220252-65220271 Msa0036620:intron 25.0%
! TTGTTCATCTTACTATGTTA+TGG - chr1_1:65220439-65220458 Msa0036620:intron 25.0%
!! TGATTATGGAGCATTAATTA+GGG + chr1_1:65220465-65220484 None:intergenic 25.0%
!! TTGATTATGGAGCATTAATT+AGG + chr1_1:65220466-65220485 None:intergenic 25.0%
!!! TTGTTTGTTTTATGCTGCAT+TGG - chr1_1:65217121-65217140 Msa0036620:three_prime_UTR 30.0%
TTAGAAATGATCGAGTGTTA+TGG - chr1_1:65217382-65217401 Msa0036620:three_prime_UTR 30.0%
!! ATGGAATTCAGTTTTAATGG+AGG - chr1_1:65217401-65217420 Msa0036620:three_prime_UTR 30.0%
!! TGGAATTCAGTTTTAATGGA+GGG - chr1_1:65217402-65217421 Msa0036620:three_prime_UTR 30.0%
TAATAGGTAGCCCAATATAT+CGG + chr1_1:65217507-65217526 None:intergenic 30.0%
CATTACTCAATCAAGCTAAT+AGG + chr1_1:65217523-65217542 None:intergenic 30.0%
GATATTAGTATACTACCTTG+AGG - chr1_1:65217549-65217568 Msa0036620:CDS 30.0%
! TGAATCTGTTGATGAAAAGT+AGG - chr1_1:65217574-65217593 Msa0036620:CDS 30.0%
TGATGAAAAGTAGGATTACT+AGG - chr1_1:65217583-65217602 Msa0036620:CDS 30.0%
TTCTAGCAATGCTTGAAAAA+TGG + chr1_1:65217713-65217732 None:intergenic 30.0%
TTTCATGCAAAATTTCTCCA+TGG - chr1_1:65217924-65217943 Msa0036620:intron 30.0%
AATTCATCAGTGAGTATTCA+TGG + chr1_1:65218058-65218077 None:intergenic 30.0%
!! ATCATTTTTGCTTGATGAAG+CGG + chr1_1:65218102-65218121 None:intergenic 30.0%
!! CTAGTTTTCTCCGTATATAT+TGG + chr1_1:65218247-65218266 None:intergenic 30.0%
TACAAACTAAACTAGGCTTT+CGG - chr1_1:65218687-65218706 Msa0036620:intron 30.0%
!! CTAGCTTGTTTATCTAGTAT+AGG + chr1_1:65218737-65218756 None:intergenic 30.0%
ATGAGTTCTGTACTTACAAT+TGG + chr1_1:65218949-65218968 None:intergenic 30.0%
ACGAAAAGGAAATTCTGTAA+TGG + chr1_1:65219002-65219021 None:intergenic 30.0%
AAACTCAAAACCTGAAAGTT+TGG + chr1_1:65219086-65219105 None:intergenic 30.0%
!! TACTGTTTTGTTGCCTTTTT+TGG - chr1_1:65219125-65219144 Msa0036620:intron 30.0%
!! ACTGTTTTGTTGCCTTTTTT+GGG - chr1_1:65219126-65219145 Msa0036620:intron 30.0%
AAAAGGACTTGCAATAGTTT+GGG + chr1_1:65219204-65219223 None:intergenic 30.0%
! AACGATTAACCTTTCTAGTA+TGG - chr1_1:65219357-65219376 Msa0036620:intron 30.0%
GATTCAAAACCATACTAGAA+AGG + chr1_1:65219369-65219388 None:intergenic 30.0%
TTAAATGGTAAGTAGGGATA+TGG - chr1_1:65219429-65219448 Msa0036620:CDS 30.0%
TATTATGATGCGGTAAAATG+GGG - chr1_1:65219606-65219625 Msa0036620:CDS 30.0%
GTAAAATGGGGAAATATGAA+CGG - chr1_1:65219618-65219637 Msa0036620:CDS 30.0%
CTAAATCCATAACAATGAGA+AGG + chr1_1:65219720-65219739 None:intergenic 30.0%
!! TAGTTCTAGGGAAAATTGAT+TGG - chr1_1:65219737-65219756 Msa0036620:CDS 30.0%
!! AGTTCTAGGGAAAATTGATT+GGG - chr1_1:65219738-65219757 Msa0036620:CDS 30.0%
AACTTCACAGTTGAATTTGT+GGG + chr1_1:65219882-65219901 None:intergenic 30.0%
AAACTTCACAGTTGAATTTG+TGG + chr1_1:65219883-65219902 None:intergenic 30.0%
! TAGTTCTACTAAGAAACAAC+TGG - chr1_1:65219987-65220006 Msa0036620:intron 30.0%
CTTAAGCTACAAGTTTCTTA+TGG - chr1_1:65220046-65220065 Msa0036620:intron 30.0%
! GTCTTTTCTAACTAGATCTA+TGG - chr1_1:65220251-65220270 Msa0036620:intron 30.0%
TGGGAGAGAAATTTGAAAAA+TGG - chr1_1:65220313-65220332 Msa0036620:intron 30.0%
GGGAGAGAAATTTGAAAAAT+GGG - chr1_1:65220314-65220333 Msa0036620:intron 30.0%
TAAGTTGTGAAGAATAAAGG+AGG - chr1_1:65220401-65220420 Msa0036620:intron 30.0%
! AGAAGCTTCAAGTTTGATTA+TGG + chr1_1:65220479-65220498 None:intergenic 30.0%
TATTAGTGTTCCCTTATTGA+AGG - chr1_1:65220517-65220536 Msa0036620:intron 30.0%
ATTAGTGTTCCCTTATTGAA+GGG - chr1_1:65220518-65220537 Msa0036620:CDS 30.0%
TTACATGTACCAATACGTGT+CGG - chr1_1:65217250-65217269 Msa0036620:three_prime_UTR 35.0%
!!! CATTTTATGAGAAGTGTTGG+TGG - chr1_1:65217286-65217305 Msa0036620:three_prime_UTR 35.0%
!! AATTCAGTTTTAATGGAGGG+AGG - chr1_1:65217405-65217424 Msa0036620:three_prime_UTR 35.0%
TAAAAAGCTGTCCTTTCACA+AGG - chr1_1:65217481-65217500 Msa0036620:three_prime_UTR 35.0%
TTTCACAAGGCCGATATATT+GGG - chr1_1:65217494-65217513 Msa0036620:three_prime_UTR 35.0%
ATCAACAGATTCAAACCTCA+AGG + chr1_1:65217567-65217586 None:intergenic 35.0%
ACTTGATAGATATCTGTGTG+TGG - chr1_1:65217628-65217647 Msa0036620:intron 35.0%
CTTGATAGATATCTGTGTGT+GGG - chr1_1:65217629-65217648 Msa0036620:intron 35.0%
GCAATGCTTGAAAAATGGAA+AGG + chr1_1:65217708-65217727 None:intergenic 35.0%
ACAGAGGCTTAAAAGATTTG+CGG - chr1_1:65217832-65217851 Msa0036620:intron 35.0%
ATGCAAAATTTCTCCATGGT+TGG - chr1_1:65217928-65217947 Msa0036620:intron 35.0%
GCTTCATCAAGCAAAAATGA+TGG - chr1_1:65218101-65218120 Msa0036620:intron 35.0%
TCATCAAGCAAAAATGATGG+TGG - chr1_1:65218104-65218123 Msa0036620:intron 35.0%
CATCCAAAACTGGAACTAAT+TGG - chr1_1:65218129-65218148 Msa0036620:intron 35.0%
! CAACCAATTAGTTCCAGTTT+TGG + chr1_1:65218135-65218154 None:intergenic 35.0%
GACTTCTTTAGGTAATGTTC+TGG - chr1_1:65218176-65218195 Msa0036620:intron 35.0%
!! CATGAACTAACTGGTTTGTT+TGG + chr1_1:65218481-65218500 None:intergenic 35.0%
GACTACATGTAGAGTTTAGT+CGG - chr1_1:65218619-65218638 Msa0036620:intron 35.0%
ACAAACTAAACTAGGCTTTC+GGG - chr1_1:65218688-65218707 Msa0036620:intron 35.0%
AATCAAAACTAACTGATGCC+AGG + chr1_1:65218860-65218879 None:intergenic 35.0%
TTGCTGTAAGAGAAACGAAA+AGG + chr1_1:65219016-65219035 None:intergenic 35.0%
CTATTTAAACCCCTACATTC+TGG - chr1_1:65219038-65219057 Msa0036620:intron 35.0%
!! CATTTTCTAGCCAAACTTTC+AGG - chr1_1:65219073-65219092 Msa0036620:intron 35.0%
!! CTGTTTTGTTGCCTTTTTTG+GGG - chr1_1:65219127-65219146 Msa0036620:intron 35.0%
GAAAAGGACTTGCAATAGTT+TGG + chr1_1:65219205-65219224 None:intergenic 35.0%
TGATAAGTACAAACTCGACT+GGG + chr1_1:65219292-65219311 None:intergenic 35.0%
TTCCTCTTTCCTAGAAATGT+AGG - chr1_1:65219452-65219471 Msa0036620:CDS 35.0%
TCCTCTTTCCTAGAAATGTA+GGG - chr1_1:65219453-65219472 Msa0036620:CDS 35.0%
! GTTATTGTTCTTGGTAGCAT+AGG - chr1_1:65219486-65219505 Msa0036620:CDS 35.0%
GCACAATCTAGTTATACTGT+CGG - chr1_1:65219649-65219668 Msa0036620:CDS 35.0%
TCTCTTCCTTCTCATTGTTA+TGG - chr1_1:65219711-65219730 Msa0036620:CDS 35.0%
ACCTTACTCAATTGTGTGAT+TGG - chr1_1:65219924-65219943 Msa0036620:intron 35.0%
ACCAATCACACAATTGAGTA+AGG + chr1_1:65219928-65219947 None:intergenic 35.0%
!! ATTGTGTGATTGGTGTTATC+TGG - chr1_1:65219934-65219953 Msa0036620:intron 35.0%
TGTTATCTGGTTAATTGTCC+AGG - chr1_1:65219947-65219966 Msa0036620:intron 35.0%
ATACAACAGAACTTGTGAAG+GGG + chr1_1:65220106-65220125 None:intergenic 35.0%
CATACAACAGAACTTGTGAA+GGG + chr1_1:65220107-65220126 None:intergenic 35.0%
ACATACAACAGAACTTGTGA+AGG + chr1_1:65220108-65220127 None:intergenic 35.0%
ATCTATGGGTCCAGAATTTA+TGG - chr1_1:65220266-65220285 Msa0036620:intron 35.0%
TCCTCAATAACACGATACTT+TGG - chr1_1:65220293-65220312 Msa0036620:intron 35.0%
CCTCAATAACACGATACTTT+GGG - chr1_1:65220294-65220313 Msa0036620:intron 35.0%
AGAAATTTGAAAAATGGGCG+AGG - chr1_1:65220319-65220338 Msa0036620:intron 35.0%
TTAGTGTTCCCTTATTGAAG+GGG - chr1_1:65220519-65220538 Msa0036620:CDS 35.0%
GAAAAACACCTGTGACATTG+TGG + chr1_1:65217070-65217089 None:intergenic 40.0%
TACATGTACCAATACGTGTC+GGG - chr1_1:65217251-65217270 Msa0036620:three_prime_UTR 40.0%
! CAATATATCGGCCTTGTGAA+AGG + chr1_1:65217495-65217514 None:intergenic 40.0%
CTTTCACAAGGCCGATATAT+TGG - chr1_1:65217493-65217512 Msa0036620:three_prime_UTR 40.0%
! TATTGGTTGTAACCTTGTGC+AGG - chr1_1:65217757-65217776 Msa0036620:intron 40.0%
CTAATTCTTCCATGACAGGA+GGG - chr1_1:65217795-65217814 Msa0036620:intron 40.0%
TAATTCTTCCATGACAGGAG+GGG - chr1_1:65217796-65217815 Msa0036620:intron 40.0%
CAAACAAGGGGTTTAAGGAT+GGG - chr1_1:65217873-65217892 Msa0036620:intron 40.0%
AAACAAGGGGTTTAAGGATG+GGG - chr1_1:65217874-65217893 Msa0036620:intron 40.0%
GGGGCACAAGATAGTATATA+TGG - chr1_1:65217893-65217912 Msa0036620:intron 40.0%
AATTTCTCCATGGTTGGCAA+TGG - chr1_1:65217934-65217953 Msa0036620:intron 40.0%
ATTTCTCCATGGTTGGCAAT+GGG - chr1_1:65217935-65217954 Msa0036620:intron 40.0%
!! GGTTGATGTTTGAGTTGCTA+TGG - chr1_1:65218150-65218169 Msa0036620:intron 40.0%
!! TGATGTTTGAGTTGCTATGG+AGG - chr1_1:65218153-65218172 Msa0036620:intron 40.0%
!! GATGTTTGAGTTGCTATGGA+GGG - chr1_1:65218154-65218173 Msa0036620:intron 40.0%
! GCTGTGTTGCATCATACTTT+TGG - chr1_1:65218352-65218371 Msa0036620:intron 40.0%
GACCGTTCAGATATTCTCTT+AGG - chr1_1:65218455-65218474 Msa0036620:intron 40.0%
GGCCTAAGAGAATATCTGAA+CGG + chr1_1:65218460-65218479 None:intergenic 40.0%
AGTTGTCCAAGACTTGAATC+GGG + chr1_1:65218787-65218806 None:intergenic 40.0%
CAGTTGTCCAAGACTTGAAT+CGG + chr1_1:65218788-65218807 None:intergenic 40.0%
TATAGCTAGCATTGCTTAGC+TGG - chr1_1:65218833-65218852 Msa0036620:intron 40.0%
ATAGCTAGCATTGCTTAGCT+GGG - chr1_1:65218834-65218853 Msa0036620:intron 40.0%
CATGCTGAACTGTATCAAAC+TGG + chr1_1:65218915-65218934 None:intergenic 40.0%
TTGGCTAGAAAATGCAGAGA+CGG + chr1_1:65219067-65219086 None:intergenic 40.0%
GAAAAAAAAAAAGCCAGCGG+TGG + chr1_1:65219174-65219193 None:intergenic 40.0%
GTGATAAGTACAAACTCGAC+TGG + chr1_1:65219293-65219312 None:intergenic 40.0%
CCTCTTTCCTAGAAATGTAG+GGG - chr1_1:65219454-65219473 Msa0036620:CDS 40.0%
CTAGGGAAAATTGATTGGGT+TGG - chr1_1:65219742-65219761 Msa0036620:CDS 40.0%
TGAGGAAGAGCCATAAATTC+TGG + chr1_1:65220279-65220298 None:intergenic 40.0%
!! CCCAAAGTATCGTGTTATTG+AGG + chr1_1:65220297-65220316 None:intergenic 40.0%
CAGAAACACCCCTTCAATAA+GGG + chr1_1:65220530-65220549 None:intergenic 40.0%
ACAGAAACACCCCTTCAATA+AGG + chr1_1:65220531-65220550 None:intergenic 40.0%
!! TATTGAAGGGGTGTTTCTGT+TGG - chr1_1:65220531-65220550 Msa0036620:CDS 40.0%
!! TGGCAGATGGATTAAGACCA+AGG + chr1_1:65217050-65217069 None:intergenic 45.0%
!! ATGCTGCATTGGCTCATTCT+TGG - chr1_1:65217132-65217151 Msa0036620:three_prime_UTR 45.0%
!! TGCATTGGCTCATTCTTGGA+TGG - chr1_1:65217136-65217155 Msa0036620:three_prime_UTR 45.0%
GTTGTAACCTTGTGCAGGAT+GGG - chr1_1:65217762-65217781 Msa0036620:intron 45.0%
GTCATGGAAGAATTAGGCAC+TGG + chr1_1:65217791-65217810 None:intergenic 45.0%
GTGCCTAATTCTTCCATGAC+AGG - chr1_1:65217791-65217810 Msa0036620:intron 45.0%
CCTCCTGTCATGGAAGAATT+AGG + chr1_1:65217797-65217816 None:intergenic 45.0%
CCTAATTCTTCCATGACAGG+AGG - chr1_1:65217794-65217813 Msa0036620:intron 45.0%
TGTGAAGCTCAGCCAAACAA+GGG - chr1_1:65217860-65217879 Msa0036620:intron 45.0%
TCAGCCAAACAAGGGGTTTA+AGG - chr1_1:65217868-65217887 Msa0036620:intron 45.0%
CCATCCTTAAACCCCTTGTT+TGG + chr1_1:65217875-65217894 None:intergenic 45.0%
CCAAACAAGGGGTTTAAGGA+TGG - chr1_1:65217872-65217891 Msa0036620:intron 45.0%
TCAGCTCATCAAACATTGCG+CGG + chr1_1:65217973-65217992 None:intergenic 45.0%
AGCTGAAGAAAACTGCAAGC+AGG - chr1_1:65217987-65218006 Msa0036620:intron 45.0%
TGCTATGGAGGGACTTCTTT+AGG - chr1_1:65218165-65218184 Msa0036620:intron 45.0%
TAGACCCATGCCCTAAGTTT+GGG - chr1_1:65218754-65218773 Msa0036620:intron 45.0%
ATGTCCCAAACTTAGGGCAT+GGG + chr1_1:65218761-65218780 None:intergenic 45.0%
AAGTACAAACTCGACTGGGT+GGG + chr1_1:65219288-65219307 None:intergenic 45.0%
TAAGTACAAACTCGACTGGG+TGG + chr1_1:65219289-65219308 None:intergenic 45.0%
! CCCCTACATTTCTAGGAAAG+AGG + chr1_1:65219457-65219476 None:intergenic 45.0%
! GGTTGGCTCTTTCAGTGAAA+GGG - chr1_1:65219759-65219778 Msa0036620:CDS 45.0%
TCCATCTGCCACAATGTCAC+AGG - chr1_1:65217059-65217078 Msa0036620:three_prime_UTR 50.0%
ACCTGTGACATTGTGGCAGA+TGG + chr1_1:65217063-65217082 None:intergenic 50.0%
ACCAATACGTGTCGGGACAT+TGG - chr1_1:65217258-65217277 Msa0036620:three_prime_UTR 50.0%
TCCAATGTCCCGACACGTAT+TGG + chr1_1:65217262-65217281 None:intergenic 50.0%
AGCATGCAGCAGAAACAAGC+AGG + chr1_1:65217664-65217683 None:intergenic 50.0%
GGTTGTAACCTTGTGCAGGA+TGG - chr1_1:65217761-65217780 Msa0036620:intron 50.0%
GTGTGAAGCTCAGCCAAACA+AGG - chr1_1:65217859-65217878 Msa0036620:intron 50.0%
GTGAAGCTCAGCCAAACAAG+GGG - chr1_1:65217861-65217880 Msa0036620:intron 50.0%
AGCTCATCAAACATTGCGCG+GGG + chr1_1:65217971-65217990 None:intergenic 50.0%
CAGCTCATCAAACATTGCGC+GGG + chr1_1:65217972-65217991 None:intergenic 50.0%
! GATGGTGGCTCATCCAAAAC+TGG - chr1_1:65218119-65218138 Msa0036620:intron 50.0%
CTAAACTAGGCTTTCGGGCT+AGG - chr1_1:65218693-65218712 Msa0036620:intron 50.0%
CTAGACCCATGCCCTAAGTT+TGG - chr1_1:65218753-65218772 Msa0036620:intron 50.0%
CATGTCCCAAACTTAGGGCA+TGG + chr1_1:65218762-65218781 None:intergenic 50.0%
GGGCTCATGTCCCAAACTTA+GGG + chr1_1:65218767-65218786 None:intergenic 50.0%
CATGAGCCCGATTCAAGTCT+TGG - chr1_1:65218778-65218797 Msa0036620:intron 50.0%
GCTAGAAAATGCAGAGACGG+TGG + chr1_1:65219064-65219083 None:intergenic 50.0%
!!! CCTTTTTTGGGGTCTGCAGA+CGG - chr1_1:65219138-65219157 Msa0036620:intron 50.0%
TTCCTAGAAATGTAGGGGCC+AGG - chr1_1:65219459-65219478 Msa0036620:CDS 50.0%
TCCTAGAAATGTAGGGGCCA+GGG - chr1_1:65219460-65219479 Msa0036620:CDS 50.0%
CCAAGAACAATAACACCCCC+TGG + chr1_1:65219480-65219499 None:intergenic 50.0%
!! CCAGGGGGTGTTATTGTTCT+TGG - chr1_1:65219477-65219496 Msa0036620:CDS 50.0%
!! GGGTTGGCTCTTTCAGTGAA+AGG - chr1_1:65219758-65219777 Msa0036620:CDS 50.0%
TTCAGTCTCCCCTCCTGTCA+TGG + chr1_1:65217807-65217826 None:intergenic 55.0%
! GGGAGACTGAAGCACTACAG+AGG - chr1_1:65217816-65217835 Msa0036620:intron 55.0%
AGGCATCCCATTGCCAACCA+TGG + chr1_1:65217944-65217963 None:intergenic 55.0%
CTCATCAAACATTGCGCGGG+GGG + chr1_1:65217969-65217988 None:intergenic 55.0%
GCTCATCAAACATTGCGCGG+GGG + chr1_1:65217970-65217989 None:intergenic 55.0%
CGGGCTCATGTCCCAAACTT+AGG + chr1_1:65218768-65218787 None:intergenic 55.0%
TAGCATTGCTTAGCTGGGCC+TGG - chr1_1:65218839-65218858 Msa0036620:intron 55.0%
AGACGGTGGCCAGAATGTAG+GGG + chr1_1:65219050-65219069 None:intergenic 55.0%
GAGACGGTGGCCAGAATGTA+GGG + chr1_1:65219051-65219070 None:intergenic 55.0%
AGAGACGGTGGCCAGAATGT+AGG + chr1_1:65219052-65219071 None:intergenic 55.0%
CCGTCTGCAGACCCCAAAAA+AGG + chr1_1:65219141-65219160 None:intergenic 55.0%
CCTAGAAATGTAGGGGCCAG+GGG - chr1_1:65219461-65219480 Msa0036620:CDS 55.0%
CTAGAAATGTAGGGGCCAGG+GGG - chr1_1:65219462-65219481 Msa0036620:CDS 55.0%
TGCTCCAGCCACTGCTTGTA+CGG - chr1_1:65220014-65220033 Msa0036620:intron 55.0%
CTGGCTTCCCATCCTGCACA+AGG + chr1_1:65217772-65217791 None:intergenic 60.0%
! CTAGGCTTTCGGGCTAGGTC+AGG - chr1_1:65218698-65218717 Msa0036620:intron 60.0%
CCCCTGGCCCCTACATTTCT+AGG + chr1_1:65219464-65219483 None:intergenic 60.0%
GCTCCAGCCACTGCTTGTAC+GGG - chr1_1:65220015-65220034 Msa0036620:intron 60.0%
AAGCGCACCCGTACAAGCAG+TGG + chr1_1:65220025-65220044 None:intergenic 60.0%
CAAACATTGCGCGGGGGGAG+AGG + chr1_1:65217964-65217983 None:intergenic 65.0%
GCACCCGTACAAGCAGTGGC+TGG + chr1_1:65220021-65220040 None:intergenic 65.0%
CGGAGTGCAAGCACCACCGC+TGG - chr1_1:65219158-65219177 Msa0036620:intron 70.0%
Chromosome Type Strat End Strand Name
chr1_1 gene 65217038 65220560 65217038 ID=Msa0036620;Name=Msa0036620
chr1_1 mRNA 65217038 65220560 65217038 ID=Msa0036620-mRNA-1;Parent=Msa0036620;Name=Msa0036620-mRNA-1;_AED=0.00;_eAED=0.00;_QI=4|1|1|1|1|1|4|510|148
chr1_1 exon 65217038 65217629 65217038 ID=Msa0036620-mRNA-1:exon:20997;Parent=Msa0036620-mRNA-1
chr1_1 exon 65219412 65219507 65219412 ID=Msa0036620-mRNA-1:exon:20996;Parent=Msa0036620-mRNA-1
chr1_1 exon 65219590 65219819 65219590 ID=Msa0036620-mRNA-1:exon:20995;Parent=Msa0036620-mRNA-1
chr1_1 exon 65220518 65220560 65220518 ID=Msa0036620-mRNA-1:exon:20994;Parent=Msa0036620-mRNA-1
chr1_1 five_prime_UTR 65220557 65220560 65220557 ID=Msa0036620-mRNA-1:five_prime_utr;Parent=Msa0036620-mRNA-1
chr1_1 CDS 65220518 65220556 65220518 ID=Msa0036620-mRNA-1:cds;Parent=Msa0036620-mRNA-1
chr1_1 CDS 65219590 65219819 65219590 ID=Msa0036620-mRNA-1:cds;Parent=Msa0036620-mRNA-1
chr1_1 CDS 65219412 65219507 65219412 ID=Msa0036620-mRNA-1:cds;Parent=Msa0036620-mRNA-1
chr1_1 CDS 65217548 65217629 65217548 ID=Msa0036620-mRNA-1:cds;Parent=Msa0036620-mRNA-1
chr1_1 three_prime_UTR 65217038 65217547 65217038 ID=Msa0036620-mRNA-1:three_prime_utr;Parent=Msa0036620-mRNA-1
Gene Sequence

>Msa0036620

ATGGACCTTGGTCTTAATCCATCTGCCACAATGTCACAGGATGGGAAGCCAGTGCCTAATTCTTCCATGACAGGAGGGGAGACTGAAGCACTACAGAGGCTTAAAAGATTTGCGGCTGAGTGTGAAGCTCAGCCAAACAAGGGGTTTAAGGATGGGGCACAAGATAGTATATATGGTGCCAACTTTTCATGCAAAATTTCTCCATGGTTGGCAATGGGATGCCTCTCCCCCCGCGCAATGTTTGATGAGCTGAAGAAAACTGCAAGCAGTGCTGTTTCCGCTTCATCAAGCAAAAATGATGGTGGCTCATCCAAAACTGGAACTAATTGGTTGATGTTTGAGTTGCTATGGAGGGACTTCTTTAGGTTTATTACCAAAAAATATAGTTCTACTAAGAAACAACTGGAAGCTGCTCCAGCCACTGCTTGTACGGGTGCGCTTGCTTAA

Protein sequence

>Msa0036620

MDLGLNPSATMSQDGKPVPNSSMTGGETEALQRLKRFAAECEAQPNKGFKDGAQDSIYGANFSCKISPWLAMGCLSPRAMFDELKKTASSAVSASSSKNDGGSSKTGTNWLMFELLWRDFFRFITKKYSSTKKQLEAAPATACTGALA*