AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0115010


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0115010 MtrunA17_Chr1g0161421 94.767 172 9 0 1 172 1 172 1.31e-113 320
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0115010 AT2G01755.1 57.627 118 50 0 54 171 56 173 2.98e-42 139
Msa0115010 AT2G01755.2 57.627 118 50 0 54 171 62 179 3.96e-42 139

Find 76 sgRNAs with CRISPR-Local

Find 176 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AAGTCTATAGATAGAATAAA+AGG 0.213144 1_3:-33516530 Msa0115010:CDS
TTTGGTTGTTTAAGCAAATA+AGG 0.229192 1_3:-33517255 Msa0115010:five_prime_UTR
ATGGTCCATTGCATCAAATT+TGG 0.268744 1_3:+33516210 None:intergenic
AACGTTGGGAATGGCACTTT+TGG 0.287641 1_3:+33517340 None:intergenic
AACCAAAGGTGGGAGGAATT+TGG 0.292113 1_3:+33517271 None:intergenic
ACCAAAGGCTTATACCTCTT+TGG 0.304276 1_3:+33517041 None:intergenic
TGCATATTGTATGGTAAATA+TGG 0.313570 1_3:+33517202 None:intergenic
TCAAATATTGGTCGCAACTA+TGG 0.319270 1_3:-33516308 Msa0115010:three_prime_UTR
TAAGTACTTCTACTTCATTT+TGG 0.333138 1_3:+33516876 None:intergenic
GGAAAGTTGTCAATTGATAA+TGG 0.357903 1_3:+33517115 None:intergenic
CCATGGCATCATTGTCCATT+TGG 0.363669 1_3:+33517153 None:intergenic
AAATTGTGTTCTTAAGCATA+TGG 0.369867 1_3:-33516164 Msa0115010:three_prime_UTR
AAATGTTCGACATCAAATAT+TGG 0.371113 1_3:-33516320 Msa0115010:three_prime_UTR
AGAATGCTTCTTGTTGGGTC+AGG 0.383377 1_3:+33516572 None:intergenic
TTCCAAATTCCTCCCACCTT+TGG 0.387105 1_3:-33517273 Msa0115010:five_prime_UTR
GAAGATAGAGATGATGAGTA+TGG 0.389990 1_3:-33516980 Msa0115010:CDS
TTGGAAATGTCTTGAAGATA+AGG 0.391167 1_3:+33517290 None:intergenic
GCTGGAAGAATGCTTCTTGT+TGG 0.394629 1_3:+33516566 None:intergenic
CTTCTGCAGATACTCAATAT+TGG 0.406034 1_3:+33516493 None:intergenic
CTGGAAGAATGCTTCTTGTT+GGG 0.406470 1_3:+33516567 None:intergenic
GACTTTATCACTGCCCTGGC+TGG 0.412026 1_3:+33516548 None:intergenic
TGTCCATTTGGCCATACCCT+TGG 0.430122 1_3:+33517165 None:intergenic
TCAATATTGGCAGGGTCAAA+AGG 0.439860 1_3:+33516506 None:intergenic
CAACGAGGAGATTTCAAAGT+TGG 0.440151 1_3:-33516954 Msa0115010:CDS
GTCCATTTGGCCATACCCTT+GGG 0.442034 1_3:+33517166 None:intergenic
CTCTATCTTCATCCTCATCT+TGG 0.448503 1_3:+33516993 None:intergenic
TTGTCAATTGATAATGGTAT+AGG 0.449082 1_3:+33517121 None:intergenic
TGCAGATACTCAATATTGGC+AGG 0.450870 1_3:+33516497 None:intergenic
AGTAGAAGTACTTATCTTCA+AGG 0.451782 1_3:-33516867 Msa0115010:intron
ATAAGGTTGGGATAGTGCTT+TGG 0.456496 1_3:+33517307 None:intergenic
AAATGTCTTGAAGATAAGGT+TGG 0.462844 1_3:+33517294 None:intergenic
TTCCCAAGGGTATGGCCAAA+TGG 0.469349 1_3:-33517168 Msa0115010:CDS
ACCAAAGAGGTATAAGCCTT+TGG 0.474169 1_3:-33517042 Msa0115010:CDS
ATACCCTTGGGAAGTGTAGT+AGG 0.478990 1_3:+33517178 None:intergenic
GGACAATGATGCCATGGCCT+AGG 0.481592 1_3:-33517147 Msa0115010:CDS
TTGAACCAAATTTGATGCAA+TGG 0.481681 1_3:-33516215 Msa0115010:three_prime_UTR
CAAGAAGCATTCTTCCAGCC+AGG 0.483504 1_3:-33516562 Msa0115010:CDS
TTGGCAATTACACAAACGTT+GGG 0.487876 1_3:+33517326 None:intergenic
GTAGTAGGATGCATATTGTA+TGG 0.494568 1_3:+33517193 None:intergenic
GAATGCTTCTTGTTGGGTCA+GGG 0.497042 1_3:+33516573 None:intergenic
CACAAGCTTACATTGTGAGT+TGG 0.506810 1_3:+33517094 None:intergenic
AATGTCTTGAAGATAAGGTT+GGG 0.509719 1_3:+33517295 None:intergenic
AGTCTATAGATAGAATAAAA+GGG 0.523947 1_3:-33516529 Msa0115010:CDS
TTTGCTTAAACAACCAAAGG+TGG 0.530223 1_3:+33517260 None:intergenic
GCCTCCTTGCACCACACCAA+AGG 0.530257 1_3:+33517026 None:intergenic
AATGCTTCTTGTTGGGTCAG+GGG 0.544161 1_3:+33516574 None:intergenic
TACTACACTTCCCAAGGGTA+TGG 0.545556 1_3:-33517176 Msa0115010:CDS
AATTACACAAACGTTGGGAA+TGG 0.552362 1_3:+33517331 None:intergenic
TTTGTCTTGAATTCTTCCCA+TGG 0.554335 1_3:+33516464 None:intergenic
ATCTGCAGAAGGATGTTCCA+TGG 0.555118 1_3:-33516481 Msa0115010:CDS
TCAACCATGCCACACAATGA+TGG 0.559292 1_3:+33516191 None:intergenic
GATAATGGTATAGGTAGCCT+AGG 0.559854 1_3:+33517130 None:intergenic
TTATTTGCTTAAACAACCAA+AGG 0.562137 1_3:+33517257 None:intergenic
TTGCTTAAACAACCAAAGGT+GGG 0.569736 1_3:+33517261 None:intergenic
TATAGACTTTATCACTGCCC+TGG 0.571801 1_3:+33516544 None:intergenic
TTTGGCAATTACACAAACGT+TGG 0.572622 1_3:+33517325 None:intergenic
TAAGCCTTTGGTGTGGTGCA+AGG 0.575947 1_3:-33517030 Msa0115010:CDS
ACTCATTGTTCATGCACTTG+TGG 0.576626 1_3:-33516900 Msa0115010:CDS
GCATCCTACTACACTTCCCA+AGG 0.594031 1_3:-33517182 Msa0115010:CDS
AAGAAGCATTCTTCCAGCCA+GGG 0.602074 1_3:-33516561 Msa0115010:CDS
TTCTATAGTCAATCAGCAAG+AGG 0.607447 1_3:-33516929 Msa0115010:CDS
AGGGGAAGTACCATAGCTCA+AGG 0.608247 1_3:+33516592 None:intergenic
TGGACCATCATTGTGTGGCA+TGG 0.612007 1_3:-33516195 Msa0115010:three_prime_UTR
TCTGCAGAAGGATGTTCCAT+GGG 0.613447 1_3:-33516480 Msa0115010:CDS
CAATATTGAGTATCTGCAGA+AGG 0.617485 1_3:-33516492 Msa0115010:CDS
CTTAAACAACCAAAGGTGGG+AGG 0.622050 1_3:+33517264 None:intergenic
CATCCTACTACACTTCCCAA+GGG 0.625588 1_3:-33517181 Msa0115010:CDS
CCAAATGGACAATGATGCCA+TGG 0.626699 1_3:-33517153 Msa0115010:CDS
GGTATAGGTAGCCTAGGCCA+TGG 0.632885 1_3:+33517136 None:intergenic
GCAAATTAGATACCAAGATG+AGG 0.635629 1_3:-33517005 Msa0115010:CDS
GCAGATACTCAATATTGGCA+GGG 0.648369 1_3:+33516498 None:intergenic
TTAGATTTGAGCAACCAAAG+AGG 0.657562 1_3:-33517055 Msa0115010:CDS
GCCTTTGGTGTGGTGCAAGG+AGG 0.677190 1_3:-33517027 Msa0115010:CDS
TGCAATGGACCATCATTGTG+TGG 0.707267 1_3:-33516200 Msa0115010:three_prime_UTR
AGAGGTATAAGCCTTTGGTG+TGG 0.717085 1_3:-33517037 Msa0115010:CDS
TGATGAGTATGGACACAACG+AGG 0.766111 1_3:-33516969 Msa0115010:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AAATAATTTGTTTGTTTTAT+TGG + chr1_3:33516732-33516751 None:intergenic 10.0%
!!! TTTTTTTTCTAATTAGAAAA+AGG - chr1_3:33516774-33516793 Msa0115010:intron 10.0%
!!! AAATAATTTGTTTGTTTTAT+TGG + chr1_3:33516732-33516751 None:intergenic 10.0%
!!! TTTTTTTTCTAATTAGAAAA+AGG - chr1_3:33516774-33516793 Msa0115010:intron 10.0%
!!! TTGTTTGTTTTATTGGTTAT+TGG + chr1_3:33516725-33516744 None:intergenic 20.0%
!! AAGTCTATAGATAGAATAAA+AGG - chr1_3:33516990-33517009 Msa0115010:CDS 20.0%
!! AGTCTATAGATAGAATAAAA+GGG - chr1_3:33516991-33517010 Msa0115010:CDS 20.0%
!!! TTGTTTGTTTTATTGGTTAT+TGG + chr1_3:33516725-33516744 None:intergenic 20.0%
!! AAGTCTATAGATAGAATAAA+AGG - chr1_3:33516990-33517009 Msa0115010:CDS 20.0%
!! AGTCTATAGATAGAATAAAA+GGG - chr1_3:33516991-33517010 Msa0115010:CDS 20.0%
! TTATTTGCTTAAACAACCAA+AGG + chr1_3:33516266-33516285 None:intergenic 25.0%
! TTTGGTTGTTTAAGCAAATA+AGG - chr1_3:33516265-33516284 Msa0115010:three_prime_UTR 25.0%
! TGCATATTGTATGGTAAATA+TGG + chr1_3:33516321-33516340 None:intergenic 25.0%
!!! TTGTCAATTGATAATGGTAT+AGG + chr1_3:33516402-33516421 None:intergenic 25.0%
!! TAAGTACTTCTACTTCATTT+TGG + chr1_3:33516647-33516666 None:intergenic 25.0%
! CCATTTGCAAAACAAAAATT+TGG + chr1_3:33516831-33516850 None:intergenic 25.0%
!!! CCAAATTTTTGTTTTGCAAA+TGG - chr1_3:33516828-33516847 Msa0115010:intron 25.0%
! AAATGTTCGACATCAAATAT+TGG - chr1_3:33517200-33517219 Msa0115010:exon 25.0%
! AAATTGTGTTCTTAAGCATA+TGG - chr1_3:33517356-33517375 Msa0115010:five_prime_UTR 25.0%
! TTATTTGCTTAAACAACCAA+AGG + chr1_3:33516266-33516285 None:intergenic 25.0%
! TTTGGTTGTTTAAGCAAATA+AGG - chr1_3:33516265-33516284 Msa0115010:three_prime_UTR 25.0%
! TGCATATTGTATGGTAAATA+TGG + chr1_3:33516321-33516340 None:intergenic 25.0%
!!! TTGTCAATTGATAATGGTAT+AGG + chr1_3:33516402-33516421 None:intergenic 25.0%
!! TAAGTACTTCTACTTCATTT+TGG + chr1_3:33516647-33516666 None:intergenic 25.0%
! CCATTTGCAAAACAAAAATT+TGG + chr1_3:33516831-33516850 None:intergenic 25.0%
!!! CCAAATTTTTGTTTTGCAAA+TGG - chr1_3:33516828-33516847 Msa0115010:intron 25.0%
! AAATGTTCGACATCAAATAT+TGG - chr1_3:33517200-33517219 Msa0115010:exon 25.0%
! AAATTGTGTTCTTAAGCATA+TGG - chr1_3:33517356-33517375 Msa0115010:five_prime_UTR 25.0%
AATGTCTTGAAGATAAGGTT+GGG + chr1_3:33516228-33516247 None:intergenic 30.0%
AAATGTCTTGAAGATAAGGT+TGG + chr1_3:33516229-33516248 None:intergenic 30.0%
TTGGAAATGTCTTGAAGATA+AGG + chr1_3:33516233-33516252 None:intergenic 30.0%
GGAAAGTTGTCAATTGATAA+TGG + chr1_3:33516408-33516427 None:intergenic 30.0%
!! AGTAGAAGTACTTATCTTCA+AGG - chr1_3:33516653-33516672 Msa0115010:intron 30.0%
ACTTATCTTCAAGGTAAGTT+TGG - chr1_3:33516662-33516681 Msa0115010:intron 30.0%
TGACAAACCATTTCATTTCA+GGG - chr1_3:33516894-33516913 Msa0115010:CDS 30.0%
TTGAACCAAATTTGATGCAA+TGG - chr1_3:33517305-33517324 Msa0115010:five_prime_UTR 30.0%
AATGTCTTGAAGATAAGGTT+GGG + chr1_3:33516228-33516247 None:intergenic 30.0%
AAATGTCTTGAAGATAAGGT+TGG + chr1_3:33516229-33516248 None:intergenic 30.0%
TTGGAAATGTCTTGAAGATA+AGG + chr1_3:33516233-33516252 None:intergenic 30.0%
GGAAAGTTGTCAATTGATAA+TGG + chr1_3:33516408-33516427 None:intergenic 30.0%
!! AGTAGAAGTACTTATCTTCA+AGG - chr1_3:33516653-33516672 Msa0115010:intron 30.0%
ACTTATCTTCAAGGTAAGTT+TGG - chr1_3:33516662-33516681 Msa0115010:intron 30.0%
TGACAAACCATTTCATTTCA+GGG - chr1_3:33516894-33516913 Msa0115010:CDS 30.0%
TTGAACCAAATTTGATGCAA+TGG - chr1_3:33517305-33517324 Msa0115010:five_prime_UTR 30.0%
AATTACACAAACGTTGGGAA+TGG + chr1_3:33516192-33516211 None:intergenic 35.0%
TTGGCAATTACACAAACGTT+GGG + chr1_3:33516197-33516216 None:intergenic 35.0%
TTTGGCAATTACACAAACGT+TGG + chr1_3:33516198-33516217 None:intergenic 35.0%
TTGCTTAAACAACCAAAGGT+GGG + chr1_3:33516262-33516281 None:intergenic 35.0%
TTTGCTTAAACAACCAAAGG+TGG + chr1_3:33516263-33516282 None:intergenic 35.0%
GTAGTAGGATGCATATTGTA+TGG + chr1_3:33516330-33516349 None:intergenic 35.0%
TTAGATTTGAGCAACCAAAG+AGG - chr1_3:33516465-33516484 Msa0115010:CDS 35.0%
GCAAATTAGATACCAAGATG+AGG - chr1_3:33516515-33516534 Msa0115010:CDS 35.0%
GAAGATAGAGATGATGAGTA+TGG - chr1_3:33516540-33516559 Msa0115010:CDS 35.0%
TTCTATAGTCAATCAGCAAG+AGG - chr1_3:33516591-33516610 Msa0115010:CDS 35.0%
GTGACAAACCATTTCATTTC+AGG - chr1_3:33516893-33516912 Msa0115010:CDS 35.0%
GACAAACCATTTCATTTCAG+GGG - chr1_3:33516895-33516914 Msa0115010:CDS 35.0%
AGAAAACCCCTGAAATGAAA+TGG + chr1_3:33516904-33516923 None:intergenic 35.0%
! TTTTCTTCATCCTTGAGCTA+TGG - chr1_3:33516918-33516937 Msa0115010:CDS 35.0%
CTTCTGCAGATACTCAATAT+TGG + chr1_3:33517030-33517049 None:intergenic 35.0%
CAATATTGAGTATCTGCAGA+AGG - chr1_3:33517028-33517047 Msa0115010:CDS 35.0%
TTTGTCTTGAATTCTTCCCA+TGG + chr1_3:33517059-33517078 None:intergenic 35.0%
TCAAATATTGGTCGCAACTA+TGG - chr1_3:33517212-33517231 Msa0115010:five_prime_UTR 35.0%
ATGGTCCATTGCATCAAATT+TGG + chr1_3:33517313-33517332 None:intergenic 35.0%
AATTACACAAACGTTGGGAA+TGG + chr1_3:33516192-33516211 None:intergenic 35.0%
TTGGCAATTACACAAACGTT+GGG + chr1_3:33516197-33516216 None:intergenic 35.0%
TTTGGCAATTACACAAACGT+TGG + chr1_3:33516198-33516217 None:intergenic 35.0%
TTGCTTAAACAACCAAAGGT+GGG + chr1_3:33516262-33516281 None:intergenic 35.0%
TTTGCTTAAACAACCAAAGG+TGG + chr1_3:33516263-33516282 None:intergenic 35.0%
GTAGTAGGATGCATATTGTA+TGG + chr1_3:33516330-33516349 None:intergenic 35.0%
TTAGATTTGAGCAACCAAAG+AGG - chr1_3:33516465-33516484 Msa0115010:CDS 35.0%
GCAAATTAGATACCAAGATG+AGG - chr1_3:33516515-33516534 Msa0115010:CDS 35.0%
GAAGATAGAGATGATGAGTA+TGG - chr1_3:33516540-33516559 Msa0115010:CDS 35.0%
TTCTATAGTCAATCAGCAAG+AGG - chr1_3:33516591-33516610 Msa0115010:CDS 35.0%
GTGACAAACCATTTCATTTC+AGG - chr1_3:33516893-33516912 Msa0115010:CDS 35.0%
GACAAACCATTTCATTTCAG+GGG - chr1_3:33516895-33516914 Msa0115010:CDS 35.0%
AGAAAACCCCTGAAATGAAA+TGG + chr1_3:33516904-33516923 None:intergenic 35.0%
! TTTTCTTCATCCTTGAGCTA+TGG - chr1_3:33516918-33516937 Msa0115010:CDS 35.0%
CTTCTGCAGATACTCAATAT+TGG + chr1_3:33517030-33517049 None:intergenic 35.0%
CAATATTGAGTATCTGCAGA+AGG - chr1_3:33517028-33517047 Msa0115010:CDS 35.0%
TTTGTCTTGAATTCTTCCCA+TGG + chr1_3:33517059-33517078 None:intergenic 35.0%
TCAAATATTGGTCGCAACTA+TGG - chr1_3:33517212-33517231 Msa0115010:five_prime_UTR 35.0%
ATGGTCCATTGCATCAAATT+TGG + chr1_3:33517313-33517332 None:intergenic 35.0%
ATAAGGTTGGGATAGTGCTT+TGG + chr1_3:33516216-33516235 None:intergenic 40.0%
! GATAATGGTATAGGTAGCCT+AGG + chr1_3:33516393-33516412 None:intergenic 40.0%
CACAAGCTTACATTGTGAGT+TGG + chr1_3:33516429-33516448 None:intergenic 40.0%
! ACCAAAGAGGTATAAGCCTT+TGG - chr1_3:33516478-33516497 Msa0115010:CDS 40.0%
ACCAAAGGCTTATACCTCTT+TGG + chr1_3:33516482-33516501 None:intergenic 40.0%
CTCTATCTTCATCCTCATCT+TGG + chr1_3:33516530-33516549 None:intergenic 40.0%
CAACGAGGAGATTTCAAAGT+TGG - chr1_3:33516566-33516585 Msa0115010:CDS 40.0%
ACTCATTGTTCATGCACTTG+TGG - chr1_3:33516620-33516639 Msa0115010:intron 40.0%
CTGGAAGAATGCTTCTTGTT+GGG + chr1_3:33516956-33516975 None:intergenic 40.0%
TATAGACTTTATCACTGCCC+TGG + chr1_3:33516979-33516998 None:intergenic 40.0%
TCAATATTGGCAGGGTCAAA+AGG + chr1_3:33517017-33517036 None:intergenic 40.0%
GCAGATACTCAATATTGGCA+GGG + chr1_3:33517025-33517044 None:intergenic 40.0%
TGCAGATACTCAATATTGGC+AGG + chr1_3:33517026-33517045 None:intergenic 40.0%
ATAAGGTTGGGATAGTGCTT+TGG + chr1_3:33516216-33516235 None:intergenic 40.0%
! GATAATGGTATAGGTAGCCT+AGG + chr1_3:33516393-33516412 None:intergenic 40.0%
CACAAGCTTACATTGTGAGT+TGG + chr1_3:33516429-33516448 None:intergenic 40.0%
! ACCAAAGAGGTATAAGCCTT+TGG - chr1_3:33516478-33516497 Msa0115010:CDS 40.0%
ACCAAAGGCTTATACCTCTT+TGG + chr1_3:33516482-33516501 None:intergenic 40.0%
CTCTATCTTCATCCTCATCT+TGG + chr1_3:33516530-33516549 None:intergenic 40.0%
CAACGAGGAGATTTCAAAGT+TGG - chr1_3:33516566-33516585 Msa0115010:CDS 40.0%
ACTCATTGTTCATGCACTTG+TGG - chr1_3:33516620-33516639 Msa0115010:intron 40.0%
CTGGAAGAATGCTTCTTGTT+GGG + chr1_3:33516956-33516975 None:intergenic 40.0%
TATAGACTTTATCACTGCCC+TGG + chr1_3:33516979-33516998 None:intergenic 40.0%
TCAATATTGGCAGGGTCAAA+AGG + chr1_3:33517017-33517036 None:intergenic 40.0%
GCAGATACTCAATATTGGCA+GGG + chr1_3:33517025-33517044 None:intergenic 40.0%
TGCAGATACTCAATATTGGC+AGG + chr1_3:33517026-33517045 None:intergenic 40.0%
! ACGTTGGGAATGGCACTTTT+GGG + chr1_3:33516182-33516201 None:intergenic 45.0%
! AACGTTGGGAATGGCACTTT+TGG + chr1_3:33516183-33516202 None:intergenic 45.0%
TTCCAAATTCCTCCCACCTT+TGG - chr1_3:33516247-33516266 Msa0115010:three_prime_UTR 45.0%
AACCAAAGGTGGGAGGAATT+TGG + chr1_3:33516252-33516271 None:intergenic 45.0%
CTTAAACAACCAAAGGTGGG+AGG + chr1_3:33516259-33516278 None:intergenic 45.0%
CATCCTACTACACTTCCCAA+GGG - chr1_3:33516339-33516358 Msa0115010:three_prime_UTR 45.0%
! ATACCCTTGGGAAGTGTAGT+AGG + chr1_3:33516345-33516364 None:intergenic 45.0%
TACTACACTTCCCAAGGGTA+TGG - chr1_3:33516344-33516363 Msa0115010:three_prime_UTR 45.0%
CCATGGCATCATTGTCCATT+TGG + chr1_3:33516370-33516389 None:intergenic 45.0%
CCAAATGGACAATGATGCCA+TGG - chr1_3:33516367-33516386 Msa0115010:three_prime_UTR 45.0%
! AGAGGTATAAGCCTTTGGTG+TGG - chr1_3:33516483-33516502 Msa0115010:CDS 45.0%
TGATGAGTATGGACACAACG+AGG - chr1_3:33516551-33516570 Msa0115010:CDS 45.0%
AATGCTTCTTGTTGGGTCAG+GGG + chr1_3:33516949-33516968 None:intergenic 45.0%
GAATGCTTCTTGTTGGGTCA+GGG + chr1_3:33516950-33516969 None:intergenic 45.0%
AGAATGCTTCTTGTTGGGTC+AGG + chr1_3:33516951-33516970 None:intergenic 45.0%
GCTGGAAGAATGCTTCTTGT+TGG + chr1_3:33516957-33516976 None:intergenic 45.0%
!! AAGAAGCATTCTTCCAGCCA+GGG - chr1_3:33516959-33516978 Msa0115010:CDS 45.0%
ATCTGCAGAAGGATGTTCCA+TGG - chr1_3:33517039-33517058 Msa0115010:CDS 45.0%
TCTGCAGAAGGATGTTCCAT+GGG - chr1_3:33517040-33517059 Msa0115010:CDS 45.0%
TGCAATGGACCATCATTGTG+TGG - chr1_3:33517320-33517339 Msa0115010:five_prime_UTR 45.0%
TCAACCATGCCACACAATGA+TGG + chr1_3:33517332-33517351 None:intergenic 45.0%
! ACGTTGGGAATGGCACTTTT+GGG + chr1_3:33516182-33516201 None:intergenic 45.0%
! AACGTTGGGAATGGCACTTT+TGG + chr1_3:33516183-33516202 None:intergenic 45.0%
TTCCAAATTCCTCCCACCTT+TGG - chr1_3:33516247-33516266 Msa0115010:three_prime_UTR 45.0%
AACCAAAGGTGGGAGGAATT+TGG + chr1_3:33516252-33516271 None:intergenic 45.0%
CTTAAACAACCAAAGGTGGG+AGG + chr1_3:33516259-33516278 None:intergenic 45.0%
CATCCTACTACACTTCCCAA+GGG - chr1_3:33516339-33516358 Msa0115010:three_prime_UTR 45.0%
! ATACCCTTGGGAAGTGTAGT+AGG + chr1_3:33516345-33516364 None:intergenic 45.0%
TACTACACTTCCCAAGGGTA+TGG - chr1_3:33516344-33516363 Msa0115010:three_prime_UTR 45.0%
CCATGGCATCATTGTCCATT+TGG + chr1_3:33516370-33516389 None:intergenic 45.0%
CCAAATGGACAATGATGCCA+TGG - chr1_3:33516367-33516386 Msa0115010:three_prime_UTR 45.0%
! AGAGGTATAAGCCTTTGGTG+TGG - chr1_3:33516483-33516502 Msa0115010:CDS 45.0%
TGATGAGTATGGACACAACG+AGG - chr1_3:33516551-33516570 Msa0115010:CDS 45.0%
AATGCTTCTTGTTGGGTCAG+GGG + chr1_3:33516949-33516968 None:intergenic 45.0%
GAATGCTTCTTGTTGGGTCA+GGG + chr1_3:33516950-33516969 None:intergenic 45.0%
AGAATGCTTCTTGTTGGGTC+AGG + chr1_3:33516951-33516970 None:intergenic 45.0%
GCTGGAAGAATGCTTCTTGT+TGG + chr1_3:33516957-33516976 None:intergenic 45.0%
!! AAGAAGCATTCTTCCAGCCA+GGG - chr1_3:33516959-33516978 Msa0115010:CDS 45.0%
ATCTGCAGAAGGATGTTCCA+TGG - chr1_3:33517039-33517058 Msa0115010:CDS 45.0%
TCTGCAGAAGGATGTTCCAT+GGG - chr1_3:33517040-33517059 Msa0115010:CDS 45.0%
TGCAATGGACCATCATTGTG+TGG - chr1_3:33517320-33517339 Msa0115010:five_prime_UTR 45.0%
TCAACCATGCCACACAATGA+TGG + chr1_3:33517332-33517351 None:intergenic 45.0%
GCATCCTACTACACTTCCCA+AGG - chr1_3:33516338-33516357 Msa0115010:three_prime_UTR 50.0%
! TTCCCAAGGGTATGGCCAAA+TGG - chr1_3:33516352-33516371 Msa0115010:three_prime_UTR 50.0%
GTCCATTTGGCCATACCCTT+GGG + chr1_3:33516357-33516376 None:intergenic 50.0%
TGTCCATTTGGCCATACCCT+TGG + chr1_3:33516358-33516377 None:intergenic 50.0%
! TAAGCCTTTGGTGTGGTGCA+AGG - chr1_3:33516490-33516509 Msa0115010:CDS 50.0%
!! AGGGGAAGTACCATAGCTCA+AGG + chr1_3:33516931-33516950 None:intergenic 50.0%
!! CAAGAAGCATTCTTCCAGCC+AGG - chr1_3:33516958-33516977 Msa0115010:CDS 50.0%
TGGACCATCATTGTGTGGCA+TGG - chr1_3:33517325-33517344 Msa0115010:five_prime_UTR 50.0%
GCATCCTACTACACTTCCCA+AGG - chr1_3:33516338-33516357 Msa0115010:three_prime_UTR 50.0%
! TTCCCAAGGGTATGGCCAAA+TGG - chr1_3:33516352-33516371 Msa0115010:three_prime_UTR 50.0%
GTCCATTTGGCCATACCCTT+GGG + chr1_3:33516357-33516376 None:intergenic 50.0%
TGTCCATTTGGCCATACCCT+TGG + chr1_3:33516358-33516377 None:intergenic 50.0%
! TAAGCCTTTGGTGTGGTGCA+AGG - chr1_3:33516490-33516509 Msa0115010:CDS 50.0%
!! AGGGGAAGTACCATAGCTCA+AGG + chr1_3:33516931-33516950 None:intergenic 50.0%
!! CAAGAAGCATTCTTCCAGCC+AGG - chr1_3:33516958-33516977 Msa0115010:CDS 50.0%
TGGACCATCATTGTGTGGCA+TGG - chr1_3:33517325-33517344 Msa0115010:five_prime_UTR 50.0%
GGACAATGATGCCATGGCCT+AGG - chr1_3:33516373-33516392 Msa0115010:three_prime_UTR 55.0%
GGTATAGGTAGCCTAGGCCA+TGG + chr1_3:33516387-33516406 None:intergenic 55.0%
GACTTTATCACTGCCCTGGC+TGG + chr1_3:33516975-33516994 None:intergenic 55.0%
GGACAATGATGCCATGGCCT+AGG - chr1_3:33516373-33516392 Msa0115010:three_prime_UTR 55.0%
GGTATAGGTAGCCTAGGCCA+TGG + chr1_3:33516387-33516406 None:intergenic 55.0%
GACTTTATCACTGCCCTGGC+TGG + chr1_3:33516975-33516994 None:intergenic 55.0%
! GCCTTTGGTGTGGTGCAAGG+AGG - chr1_3:33516493-33516512 Msa0115010:CDS 60.0%
GCCTCCTTGCACCACACCAA+AGG + chr1_3:33516497-33516516 None:intergenic 60.0%
! GCCTTTGGTGTGGTGCAAGG+AGG - chr1_3:33516493-33516512 Msa0115010:CDS 60.0%
GCCTCCTTGCACCACACCAA+AGG + chr1_3:33516497-33516516 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
chr1_3 gene 33516158 33517384 33516158 ID=Msa0115010;Name=Msa0115010
chr1_3 mRNA 33516158 33517384 33516158 ID=Msa0115010-mRNA-1;Parent=Msa0115010;Name=Msa0115010-mRNA-1;_AED=0.01;_eAED=0.01;_QI=178|1|1|1|1|1|2|290|172
chr1_3 exon 33516158 33516627 33516158 ID=Msa0115010-mRNA-1:exon:10510;Parent=Msa0115010-mRNA-1
chr1_3 exon 33516868 33517384 33516868 ID=Msa0115010-mRNA-1:exon:10509;Parent=Msa0115010-mRNA-1
chr1_3 five_prime_UTR 33517207 33517384 33517207 ID=Msa0115010-mRNA-1:five_prime_utr;Parent=Msa0115010-mRNA-1
chr1_3 CDS 33516868 33517206 33516868 ID=Msa0115010-mRNA-1:cds;Parent=Msa0115010-mRNA-1
chr1_3 CDS 33516448 33516627 33516448 ID=Msa0115010-mRNA-1:cds;Parent=Msa0115010-mRNA-1
chr1_3 three_prime_UTR 33516158 33516447 33516158 ID=Msa0115010-mRNA-1:three_prime_utr;Parent=Msa0115010-mRNA-1
Gene Sequence

>Msa0115010

ATGCATCCTACTACACTTCCCAAGGGTATGGCCAAATGGACAATGATGCCATGGCCTAGGCTACCTATACCATTATCAATTGACAACTTTCCAACTCACAATGTAAGCTTGTGTTTTGACTTGAAAGAATTAGATTTGAGCAACCAAAGAGGTATAAGCCTTTGGTGTGGTGCAAGGAGGCAAATTAGATACCAAGATGAGGATGAAGATAGAGATGATGAGTATGGACACAACGAGGAGATTTCAAAGTTGGAATTCTATAGTCAATCAGCAAGAGGAGAAGCACTCATTGTTCATGCACTTGTGGACCAAAATGAAGTAGAAGTACTTATCTTCAAGGGGTTTTCTTCATCCTTGAGCTATGGTACTTCCCCTGACCCAACAAGAAGCATTCTTCCAGCCAGGGCAGTGATAAAGTCTATAGATAGAATAAAAGGGCCTTTTGACCCTGCCAATATTGAGTATCTGCAGAAGGATGTTCCATGGGAAGAATTCAAGACAAATATTCTTTCTAGCTAA

Protein sequence

>Msa0115010

MHPTTLPKGMAKWTMMPWPRLPIPLSIDNFPTHNVSLCFDLKELDLSNQRGISLWCGARRQIRYQDEDEDRDDEYGHNEEISKLEFYSQSARGEALIVHALVDQNEVEVLIFKGFSSSLSYGTSPDPTRSILPARAVIKSIDRIKGPFDPANIEYLQKDVPWEEFKTNILSS*