AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0380520


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0380520 MtrunA17_Chr3g0133941 94.495 218 6 1 1 212 1 218 9.37e-151 417
Msa0380520 MtrunA17_Chr3g0142051 37.719 114 61 3 95 207 13 117 9.23e-15 67.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0380520 AT1G07700.1 76.515 132 30 1 76 207 74 204 9.52e-71 214
Msa0380520 AT1G07700.4 76.515 132 30 1 76 207 74 204 9.52e-71 214
Msa0380520 AT1G07700.2 76.515 132 30 1 76 207 74 204 9.52e-71 214
Msa0380520 AT1G07700.3 76.515 132 30 1 76 207 87 217 3.43e-70 213
Msa0380520 AT5G42980.1 33.628 113 67 2 95 207 12 116 6.29e-12 60.8
Msa0380520 AT3G51030.1 36.697 109 59 3 95 202 13 112 1.37e-11 59.7

Find 65 sgRNAs with CRISPR-Local

Find 187 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CAAAGGCAAAAGCGCGGTTT+TGG 0.277958 3_1:+82168134 None:intergenic
TCCTTTCTTTGTCTCTGGTT+GGG 0.298576 3_1:-82169488 None:intergenic
TAGTATCCGCAAACATTAAA+AGG 0.305832 3_1:-82169767 None:intergenic
ACTTCCCAACAAAGTGAATT+AGG 0.309838 3_1:-82169702 None:intergenic
AACAATCCTTTCTTTGTCTC+TGG 0.330128 3_1:-82169493 None:intergenic
TATGTTCGGGAAATTCATTT+TGG 0.341748 3_1:+82168204 Msa0380520:five_prime_UTR
GTCAGCCTAATTCACTTTGT+TGG 0.358599 3_1:+82169697 Msa0380520:three_prime_UTR
CTAGATAAGTCTAAAGGAAC+TGG 0.380813 3_1:+82168635 Msa0380520:CDS
GCAAAGTTGTGCAAGAAATC+TGG 0.381106 3_1:+82168725 Msa0380520:CDS
CTTCCATTGAATCATATGTT+CGG 0.383395 3_1:+82168190 Msa0380520:five_prime_UTR
TCAGCCTAATTCACTTTGTT+GGG 0.398705 3_1:+82169698 Msa0380520:three_prime_UTR
TTGCGGAACGACTTAGAATC+AGG 0.406477 3_1:+82169096 Msa0380520:CDS
TTCCATTGAATCATATGTTC+GGG 0.409729 3_1:+82168191 Msa0380520:five_prime_UTR
AATTCTCTCACACATTCAAC+AGG 0.416746 3_1:-82168584 None:intergenic
TTATGCTTTAGAAAGATAAC+AGG 0.421854 3_1:-82168761 None:intergenic
TATTGATAAGCTAAGGGATA+AGG 0.422341 3_1:-82168279 None:intergenic
CAGTGTAAAACAAGGATCAT+AGG 0.422790 3_1:-82168253 None:intergenic
AACTAGTGACATACCTTGTA+TGG 0.427244 3_1:-82168318 None:intergenic
ATCCTTTCTTTGTCTCTGGT+TGG 0.431773 3_1:-82169489 None:intergenic
TGCAACTTCCACAAGAGGTT+CGG 0.443956 3_1:-82168682 None:intergenic
TTCCCGAACATATGATTCAA+TGG 0.444857 3_1:-82168193 None:intergenic
AATAATTTATTGATAAGCTA+AGG 0.448915 3_1:-82168286 None:intergenic
CTCTTCCACTTCTACAAAGA+TGG 0.449719 3_1:+82169447 Msa0380520:CDS
GATTTCTTCCGAACCTCTTG+TGG 0.457067 3_1:+82168674 Msa0380520:CDS
GATATGTATACTTTCCATGT+AGG 0.472363 3_1:+82169892 Msa0380520:three_prime_UTR
AGTCATAGAAAACTATATCT+TGG 0.473717 3_1:+82168464 Msa0380520:CDS
TATTGATTATTAACCATACA+AGG 0.478364 3_1:+82168305 Msa0380520:five_prime_UTR
AAGCCTTGTTGACATTCAAC+GGG 0.478995 3_1:-82168533 None:intergenic
ACATCATCATCATCTTCATC+AGG 0.492703 3_1:-82168557 None:intergenic
TTGAGCTAACTTCGAGCTCA+AGG 0.494823 3_1:+82169558 Msa0380520:exon
TGACTGTTGTACGTATAAAT+CGG 0.500257 3_1:+82169603 Msa0380520:three_prime_UTR
ACTAGATTAGTAGATGAGTC+TGG 0.500815 3_1:+82169786 Msa0380520:three_prime_UTR
CAAGCCTTGTTGACATTCAA+CGG 0.505128 3_1:-82168534 None:intergenic
AAGTTGCAAGTATATTGAGC+AGG 0.512637 3_1:+82168697 Msa0380520:CDS
CTACAAAGATGGAAAACTGT+TGG 0.519244 3_1:+82169458 Msa0380520:CDS
AAAATTCTAGATAAGTCTAA+AGG 0.519884 3_1:+82168629 Msa0380520:CDS
TCTAAGTCGTTCCGCAACCT+CGG 0.520659 3_1:-82169090 None:intergenic
AGTGTAAAACAAGGATCATA+GGG 0.526894 3_1:-82168252 None:intergenic
AACTGGATCTCTTGTTGTGG+TGG 0.529192 3_1:+82168652 Msa0380520:CDS
TGATGAAGAATCCGAGGTTG+CGG 0.530168 3_1:+82169079 Msa0380520:CDS
TATGATTCAATGGAAGAAGA+AGG 0.550164 3_1:-82168183 None:intergenic
AATACAGAAATCATGACAGC+TGG 0.550199 3_1:-82169868 None:intergenic
ATCTAATCTGACACTTAGAA+AGG 0.556672 3_1:-82168375 None:intergenic
ATAATTTATTGATAAGCTAA+GGG 0.559409 3_1:-82168285 None:intergenic
CATAGAAAACTATATCTTGG+TGG 0.559490 3_1:+82168467 Msa0380520:CDS
ACAAAGTGAATTAGGCTGAC+AGG 0.560513 3_1:-82169694 None:intergenic
TCCCAACCAGAGACAAAGAA+AGG 0.565898 3_1:+82169487 Msa0380520:CDS
ATACTTGCAACTTCCACAAG+AGG 0.567703 3_1:-82168687 None:intergenic
ATAGAAAACTATATCTTGGT+GGG 0.574832 3_1:+82168468 Msa0380520:CDS
TGGTACCTATTAATAAAATG+AGG 0.575324 3_1:+82168498 Msa0380520:CDS
AGTTGCAAGTATATTGAGCA+GGG 0.585364 3_1:+82168698 Msa0380520:CDS
TGAGCTAACTTCGAGCTCAA+GGG 0.585733 3_1:+82169559 Msa0380520:exon
CTTCAAGAGATGAGTACTTG+AGG 0.592510 3_1:-82169524 None:intergenic
AAGAGATGAGTACTTGAGGA+TGG 0.618825 3_1:-82169520 None:intergenic
TGAACTTAGAGCGTTCATGT+TGG 0.620966 3_1:-82168160 None:intergenic
TGCGGAACGACTTAGAATCA+GGG 0.632999 3_1:+82169097 Msa0380520:CDS
CTAACTTCGAGCTCAAGGGA+TGG 0.651893 3_1:+82169563 Msa0380520:exon
TCTTTGTAGAAGTGGAAGAG+AGG 0.655662 3_1:-82169444 None:intergenic
AGGAACTGGATCTCTTGTTG+TGG 0.658617 3_1:+82168649 Msa0380520:CDS
TATCCCGTTGAATGTCAACA+AGG 0.662409 3_1:+82168530 Msa0380520:CDS
ATACGTACAACAGTCATCGA+AGG 0.671294 3_1:-82169596 None:intergenic
AGATTGGAAATTCTAGACTG+AGG 0.672668 3_1:-82168416 None:intergenic
TAAGGTGTCAGTGTAAAACA+AGG 0.672939 3_1:-82168261 None:intergenic
TGAGTATGATGAAGAATCCG+AGG 0.729308 3_1:+82169073 Msa0380520:CDS
ATATCACAAAGGCAAAAGCG+CGG 0.738438 3_1:+82168128 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATAATTTATTGATAAGCTAA+GGG - chr3_1:82168288-82168307 None:intergenic 15.0%
!! AATAATTTATTGATAAGCTA+AGG - chr3_1:82168289-82168308 None:intergenic 15.0%
!!! ATTATTCAATAAGTTGATTT+TGG - chr3_1:82169400-82169419 None:intergenic 15.0%
!! ATAATTTATTGATAAGCTAA+GGG - chr3_1:82168288-82168307 None:intergenic 15.0%
!! AATAATTTATTGATAAGCTA+AGG - chr3_1:82168289-82168308 None:intergenic 15.0%
!!! ATTATTCAATAAGTTGATTT+TGG - chr3_1:82169400-82169419 None:intergenic 15.0%
!!! TATTGATTATTAACCATACA+AGG + chr3_1:82168305-82168324 Msa0380520:five_prime_UTR 20.0%
!!! TTGTACCTCATTTTATTAAT+AGG - chr3_1:82168506-82168525 None:intergenic 20.0%
!! AAAATTCTAGATAAGTCTAA+AGG + chr3_1:82168629-82168648 Msa0380520:CDS 20.0%
!! ACTATTAGTTACAAATTAGT+TGG + chr3_1:82168835-82168854 Msa0380520:intron 20.0%
!! ATAATACAAATGTGATACAT+TGG - chr3_1:82168932-82168951 None:intergenic 20.0%
!! TTAGATATTTATAGCATGTA+GGG - chr3_1:82169361-82169380 None:intergenic 20.0%
!!! CTTTTGAAAAAGTTCTAATA+AGG - chr3_1:82169957-82169976 None:intergenic 20.0%
!!! TATTGATTATTAACCATACA+AGG + chr3_1:82168305-82168324 Msa0380520:five_prime_UTR 20.0%
!!! TTGTACCTCATTTTATTAAT+AGG - chr3_1:82168506-82168525 None:intergenic 20.0%
!! AAAATTCTAGATAAGTCTAA+AGG + chr3_1:82168629-82168648 Msa0380520:CDS 20.0%
!! ACTATTAGTTACAAATTAGT+TGG + chr3_1:82168835-82168854 Msa0380520:intron 20.0%
!! ATAATACAAATGTGATACAT+TGG - chr3_1:82168932-82168951 None:intergenic 20.0%
!! TTAGATATTTATAGCATGTA+GGG - chr3_1:82169361-82169380 None:intergenic 20.0%
!!! CTTTTGAAAAAGTTCTAATA+AGG - chr3_1:82169957-82169976 None:intergenic 20.0%
! AGTCATAGAAAACTATATCT+TGG + chr3_1:82168464-82168483 Msa0380520:CDS 25.0%
! ATAGAAAACTATATCTTGGT+GGG + chr3_1:82168468-82168487 Msa0380520:CDS 25.0%
! TGGTACCTATTAATAAAATG+AGG + chr3_1:82168498-82168517 Msa0380520:CDS 25.0%
!!! TTATGCTTTAGAAAGATAAC+AGG - chr3_1:82168764-82168783 None:intergenic 25.0%
!! TATGGATTAAAAACTGTTAG+CGG + chr3_1:82168863-82168882 Msa0380520:intron 25.0%
! GTTAGATATTTATAGCATGT+AGG - chr3_1:82169362-82169381 None:intergenic 25.0%
! TAATAATCACAAACTAATGC+AGG + chr3_1:82169416-82169435 Msa0380520:intron 25.0%
! TAAAACCAGAAAAAGAGTAA+TGG + chr3_1:82169742-82169761 Msa0380520:three_prime_UTR 25.0%
! CATATAAAAAAGAACCTACA+TGG - chr3_1:82169909-82169928 None:intergenic 25.0%
!!! GAACTTTTTCAAAAGTTAGA+AGG + chr3_1:82169962-82169981 Msa0380520:three_prime_UTR 25.0%
! AGTCATAGAAAACTATATCT+TGG + chr3_1:82168464-82168483 Msa0380520:CDS 25.0%
! ATAGAAAACTATATCTTGGT+GGG + chr3_1:82168468-82168487 Msa0380520:CDS 25.0%
! TGGTACCTATTAATAAAATG+AGG + chr3_1:82168498-82168517 Msa0380520:CDS 25.0%
!!! TTATGCTTTAGAAAGATAAC+AGG - chr3_1:82168764-82168783 None:intergenic 25.0%
!! TATGGATTAAAAACTGTTAG+CGG + chr3_1:82168863-82168882 Msa0380520:intron 25.0%
! GTTAGATATTTATAGCATGT+AGG - chr3_1:82169362-82169381 None:intergenic 25.0%
! TAATAATCACAAACTAATGC+AGG + chr3_1:82169416-82169435 Msa0380520:intron 25.0%
! TAAAACCAGAAAAAGAGTAA+TGG + chr3_1:82169742-82169761 Msa0380520:three_prime_UTR 25.0%
! CATATAAAAAAGAACCTACA+TGG - chr3_1:82169909-82169928 None:intergenic 25.0%
!!! GAACTTTTTCAAAAGTTAGA+AGG + chr3_1:82169962-82169981 Msa0380520:three_prime_UTR 25.0%
TATGATTCAATGGAAGAAGA+AGG - chr3_1:82168186-82168205 None:intergenic 30.0%
CTTCCATTGAATCATATGTT+CGG + chr3_1:82168190-82168209 Msa0380520:five_prime_UTR 30.0%
TTCCATTGAATCATATGTTC+GGG + chr3_1:82168191-82168210 Msa0380520:five_prime_UTR 30.0%
! TATGTTCGGGAAATTCATTT+TGG + chr3_1:82168204-82168223 Msa0380520:five_prime_UTR 30.0%
AGTGTAAAACAAGGATCATA+GGG - chr3_1:82168255-82168274 None:intergenic 30.0%
TATTGATAAGCTAAGGGATA+AGG - chr3_1:82168282-82168301 None:intergenic 30.0%
ATCTAATCTGACACTTAGAA+AGG - chr3_1:82168378-82168397 None:intergenic 30.0%
!!! TTCCAATCTAGTTTTTAGCT+TGG + chr3_1:82168430-82168449 Msa0380520:CDS 30.0%
AACCAAGCTAAAAACTAGAT+TGG - chr3_1:82168435-82168454 None:intergenic 30.0%
! GATATAGTTTTCTATGACTG+TGG - chr3_1:82168463-82168482 None:intergenic 30.0%
CATAGAAAACTATATCTTGG+TGG + chr3_1:82168467-82168486 Msa0380520:CDS 30.0%
TTAACTGTTCAGTTTGTCTA+TGG + chr3_1:82168806-82168825 Msa0380520:intron 30.0%
!! ACAAATTAGTTGGTGACTTA+TGG + chr3_1:82168845-82168864 Msa0380520:intron 30.0%
ATCAATTACCTGCAATAAGA+GGG - chr3_1:82169054-82169073 None:intergenic 30.0%
AAACATGAAGATGATACTGA+TGG - chr3_1:82169165-82169184 None:intergenic 30.0%
CTTAGTATGCATTCAATTGA+TGG + chr3_1:82169242-82169261 Msa0380520:intron 30.0%
! GATGGATAATCTTGTTTCTT+AGG + chr3_1:82169260-82169279 Msa0380520:intron 30.0%
TGACTGTTGTACGTATAAAT+CGG + chr3_1:82169603-82169622 Msa0380520:three_prime_UTR 30.0%
! ATGGTACCTTTTAATGTTTG+CGG + chr3_1:82169761-82169780 Msa0380520:three_prime_UTR 30.0%
TAGTATCCGCAAACATTAAA+AGG - chr3_1:82169770-82169789 None:intergenic 30.0%
GATATGTATACTTTCCATGT+AGG + chr3_1:82169892-82169911 Msa0380520:three_prime_UTR 30.0%
TATGATTCAATGGAAGAAGA+AGG - chr3_1:82168186-82168205 None:intergenic 30.0%
CTTCCATTGAATCATATGTT+CGG + chr3_1:82168190-82168209 Msa0380520:five_prime_UTR 30.0%
TTCCATTGAATCATATGTTC+GGG + chr3_1:82168191-82168210 Msa0380520:five_prime_UTR 30.0%
! TATGTTCGGGAAATTCATTT+TGG + chr3_1:82168204-82168223 Msa0380520:five_prime_UTR 30.0%
AGTGTAAAACAAGGATCATA+GGG - chr3_1:82168255-82168274 None:intergenic 30.0%
TATTGATAAGCTAAGGGATA+AGG - chr3_1:82168282-82168301 None:intergenic 30.0%
ATCTAATCTGACACTTAGAA+AGG - chr3_1:82168378-82168397 None:intergenic 30.0%
!!! TTCCAATCTAGTTTTTAGCT+TGG + chr3_1:82168430-82168449 Msa0380520:CDS 30.0%
AACCAAGCTAAAAACTAGAT+TGG - chr3_1:82168435-82168454 None:intergenic 30.0%
! GATATAGTTTTCTATGACTG+TGG - chr3_1:82168463-82168482 None:intergenic 30.0%
CATAGAAAACTATATCTTGG+TGG + chr3_1:82168467-82168486 Msa0380520:CDS 30.0%
TTAACTGTTCAGTTTGTCTA+TGG + chr3_1:82168806-82168825 Msa0380520:intron 30.0%
!! ACAAATTAGTTGGTGACTTA+TGG + chr3_1:82168845-82168864 Msa0380520:intron 30.0%
ATCAATTACCTGCAATAAGA+GGG - chr3_1:82169054-82169073 None:intergenic 30.0%
AAACATGAAGATGATACTGA+TGG - chr3_1:82169165-82169184 None:intergenic 30.0%
CTTAGTATGCATTCAATTGA+TGG + chr3_1:82169242-82169261 Msa0380520:intron 30.0%
! GATGGATAATCTTGTTTCTT+AGG + chr3_1:82169260-82169279 Msa0380520:intron 30.0%
TGACTGTTGTACGTATAAAT+CGG + chr3_1:82169603-82169622 Msa0380520:three_prime_UTR 30.0%
! ATGGTACCTTTTAATGTTTG+CGG + chr3_1:82169761-82169780 Msa0380520:three_prime_UTR 30.0%
TAGTATCCGCAAACATTAAA+AGG - chr3_1:82169770-82169789 None:intergenic 30.0%
GATATGTATACTTTCCATGT+AGG + chr3_1:82169892-82169911 Msa0380520:three_prime_UTR 30.0%
TTCCCGAACATATGATTCAA+TGG - chr3_1:82168196-82168215 None:intergenic 35.0%
CAGTGTAAAACAAGGATCAT+AGG - chr3_1:82168256-82168275 None:intergenic 35.0%
! TAAGGTGTCAGTGTAAAACA+AGG - chr3_1:82168264-82168283 None:intergenic 35.0%
AACTAGTGACATACCTTGTA+TGG - chr3_1:82168321-82168340 None:intergenic 35.0%
AGATTGGAAATTCTAGACTG+AGG - chr3_1:82168419-82168438 None:intergenic 35.0%
ATATCTTGGTGGGACAAAAA+TGG + chr3_1:82168478-82168497 Msa0380520:CDS 35.0%
ACATCATCATCATCTTCATC+AGG - chr3_1:82168560-82168579 None:intergenic 35.0%
AATTCTCTCACACATTCAAC+AGG - chr3_1:82168587-82168606 None:intergenic 35.0%
CTAGATAAGTCTAAAGGAAC+TGG + chr3_1:82168635-82168654 Msa0380520:CDS 35.0%
AAGTTGCAAGTATATTGAGC+AGG + chr3_1:82168697-82168716 Msa0380520:CDS 35.0%
AGTTGCAAGTATATTGAGCA+GGG + chr3_1:82168698-82168717 Msa0380520:CDS 35.0%
CATCAATTACCTGCAATAAG+AGG - chr3_1:82169055-82169074 None:intergenic 35.0%
! GTTTTCCATCTTTGTAGAAG+TGG - chr3_1:82169455-82169474 None:intergenic 35.0%
CTACAAAGATGGAAAACTGT+TGG + chr3_1:82169458-82169477 Msa0380520:CDS 35.0%
AACAATCCTTTCTTTGTCTC+TGG - chr3_1:82169496-82169515 None:intergenic 35.0%
TCAGCCTAATTCACTTTGTT+GGG + chr3_1:82169698-82169717 Msa0380520:three_prime_UTR 35.0%
ACTTCCCAACAAAGTGAATT+AGG - chr3_1:82169705-82169724 None:intergenic 35.0%
!! TGGTTTTACAAACTCTACAC+TGG - chr3_1:82169730-82169749 None:intergenic 35.0%
! AGGTACCATTACTCTTTTTC+TGG - chr3_1:82169750-82169769 None:intergenic 35.0%
ACTAGATTAGTAGATGAGTC+TGG + chr3_1:82169786-82169805 Msa0380520:three_prime_UTR 35.0%
AATACAGAAATCATGACAGC+TGG - chr3_1:82169871-82169890 None:intergenic 35.0%
TTCCCGAACATATGATTCAA+TGG - chr3_1:82168196-82168215 None:intergenic 35.0%
CAGTGTAAAACAAGGATCAT+AGG - chr3_1:82168256-82168275 None:intergenic 35.0%
! TAAGGTGTCAGTGTAAAACA+AGG - chr3_1:82168264-82168283 None:intergenic 35.0%
AACTAGTGACATACCTTGTA+TGG - chr3_1:82168321-82168340 None:intergenic 35.0%
AGATTGGAAATTCTAGACTG+AGG - chr3_1:82168419-82168438 None:intergenic 35.0%
ATATCTTGGTGGGACAAAAA+TGG + chr3_1:82168478-82168497 Msa0380520:CDS 35.0%
ACATCATCATCATCTTCATC+AGG - chr3_1:82168560-82168579 None:intergenic 35.0%
AATTCTCTCACACATTCAAC+AGG - chr3_1:82168587-82168606 None:intergenic 35.0%
CTAGATAAGTCTAAAGGAAC+TGG + chr3_1:82168635-82168654 Msa0380520:CDS 35.0%
AAGTTGCAAGTATATTGAGC+AGG + chr3_1:82168697-82168716 Msa0380520:CDS 35.0%
AGTTGCAAGTATATTGAGCA+GGG + chr3_1:82168698-82168717 Msa0380520:CDS 35.0%
CATCAATTACCTGCAATAAG+AGG - chr3_1:82169055-82169074 None:intergenic 35.0%
! GTTTTCCATCTTTGTAGAAG+TGG - chr3_1:82169455-82169474 None:intergenic 35.0%
CTACAAAGATGGAAAACTGT+TGG + chr3_1:82169458-82169477 Msa0380520:CDS 35.0%
AACAATCCTTTCTTTGTCTC+TGG - chr3_1:82169496-82169515 None:intergenic 35.0%
TCAGCCTAATTCACTTTGTT+GGG + chr3_1:82169698-82169717 Msa0380520:three_prime_UTR 35.0%
ACTTCCCAACAAAGTGAATT+AGG - chr3_1:82169705-82169724 None:intergenic 35.0%
!! TGGTTTTACAAACTCTACAC+TGG - chr3_1:82169730-82169749 None:intergenic 35.0%
! AGGTACCATTACTCTTTTTC+TGG - chr3_1:82169750-82169769 None:intergenic 35.0%
ACTAGATTAGTAGATGAGTC+TGG + chr3_1:82169786-82169805 Msa0380520:three_prime_UTR 35.0%
AATACAGAAATCATGACAGC+TGG - chr3_1:82169871-82169890 None:intergenic 35.0%
! TGAACTTAGAGCGTTCATGT+TGG - chr3_1:82168163-82168182 None:intergenic 40.0%
TATCCCGTTGAATGTCAACA+AGG + chr3_1:82168530-82168549 Msa0380520:CDS 40.0%
!! AAGCCTTGTTGACATTCAAC+GGG - chr3_1:82168536-82168555 None:intergenic 40.0%
!! CAAGCCTTGTTGACATTCAA+CGG - chr3_1:82168537-82168556 None:intergenic 40.0%
ATACTTGCAACTTCCACAAG+AGG - chr3_1:82168690-82168709 None:intergenic 40.0%
GCAAAGTTGTGCAAGAAATC+TGG + chr3_1:82168725-82168744 Msa0380520:CDS 40.0%
CTGTTCAGTTTGTCTATGGT+TGG + chr3_1:82168810-82168829 Msa0380520:intron 40.0%
TATCACTTCCCTCTTATTGC+AGG + chr3_1:82169043-82169062 Msa0380520:intron 40.0%
TGAGTATGATGAAGAATCCG+AGG + chr3_1:82169073-82169092 Msa0380520:CDS 40.0%
CATGAAGATGATACTGATGG+CGG - chr3_1:82169162-82169181 None:intergenic 40.0%
TCTTTGTAGAAGTGGAAGAG+AGG - chr3_1:82169447-82169466 None:intergenic 40.0%
CTCTTCCACTTCTACAAAGA+TGG + chr3_1:82169447-82169466 Msa0380520:CDS 40.0%
TCCTTTCTTTGTCTCTGGTT+GGG - chr3_1:82169491-82169510 None:intergenic 40.0%
ATCCTTTCTTTGTCTCTGGT+TGG - chr3_1:82169492-82169511 None:intergenic 40.0%
AAGAGATGAGTACTTGAGGA+TGG - chr3_1:82169523-82169542 None:intergenic 40.0%
CTTCAAGAGATGAGTACTTG+AGG - chr3_1:82169527-82169546 None:intergenic 40.0%
ATACGTACAACAGTCATCGA+AGG - chr3_1:82169599-82169618 None:intergenic 40.0%
ACAAAGTGAATTAGGCTGAC+AGG - chr3_1:82169697-82169716 None:intergenic 40.0%
GTCAGCCTAATTCACTTTGT+TGG + chr3_1:82169697-82169716 Msa0380520:three_prime_UTR 40.0%
! TGAACTTAGAGCGTTCATGT+TGG - chr3_1:82168163-82168182 None:intergenic 40.0%
TATCCCGTTGAATGTCAACA+AGG + chr3_1:82168530-82168549 Msa0380520:CDS 40.0%
!! AAGCCTTGTTGACATTCAAC+GGG - chr3_1:82168536-82168555 None:intergenic 40.0%
!! CAAGCCTTGTTGACATTCAA+CGG - chr3_1:82168537-82168556 None:intergenic 40.0%
ATACTTGCAACTTCCACAAG+AGG - chr3_1:82168690-82168709 None:intergenic 40.0%
GCAAAGTTGTGCAAGAAATC+TGG + chr3_1:82168725-82168744 Msa0380520:CDS 40.0%
CTGTTCAGTTTGTCTATGGT+TGG + chr3_1:82168810-82168829 Msa0380520:intron 40.0%
TATCACTTCCCTCTTATTGC+AGG + chr3_1:82169043-82169062 Msa0380520:intron 40.0%
TGAGTATGATGAAGAATCCG+AGG + chr3_1:82169073-82169092 Msa0380520:CDS 40.0%
CATGAAGATGATACTGATGG+CGG - chr3_1:82169162-82169181 None:intergenic 40.0%
TCTTTGTAGAAGTGGAAGAG+AGG - chr3_1:82169447-82169466 None:intergenic 40.0%
CTCTTCCACTTCTACAAAGA+TGG + chr3_1:82169447-82169466 Msa0380520:CDS 40.0%
TCCTTTCTTTGTCTCTGGTT+GGG - chr3_1:82169491-82169510 None:intergenic 40.0%
ATCCTTTCTTTGTCTCTGGT+TGG - chr3_1:82169492-82169511 None:intergenic 40.0%
AAGAGATGAGTACTTGAGGA+TGG - chr3_1:82169523-82169542 None:intergenic 40.0%
CTTCAAGAGATGAGTACTTG+AGG - chr3_1:82169527-82169546 None:intergenic 40.0%
ATACGTACAACAGTCATCGA+AGG - chr3_1:82169599-82169618 None:intergenic 40.0%
ACAAAGTGAATTAGGCTGAC+AGG - chr3_1:82169697-82169716 None:intergenic 40.0%
GTCAGCCTAATTCACTTTGT+TGG + chr3_1:82169697-82169716 Msa0380520:three_prime_UTR 40.0%
AGGAACTGGATCTCTTGTTG+TGG + chr3_1:82168649-82168668 Msa0380520:CDS 45.0%
! AACTGGATCTCTTGTTGTGG+TGG + chr3_1:82168652-82168671 Msa0380520:CDS 45.0%
GATTTCTTCCGAACCTCTTG+TGG + chr3_1:82168674-82168693 Msa0380520:CDS 45.0%
TGCAACTTCCACAAGAGGTT+CGG - chr3_1:82168685-82168704 None:intergenic 45.0%
TGATGAAGAATCCGAGGTTG+CGG + chr3_1:82169079-82169098 Msa0380520:CDS 45.0%
TTGCGGAACGACTTAGAATC+AGG + chr3_1:82169096-82169115 Msa0380520:CDS 45.0%
TGCGGAACGACTTAGAATCA+GGG + chr3_1:82169097-82169116 Msa0380520:CDS 45.0%
TCCCAACCAGAGACAAAGAA+AGG + chr3_1:82169487-82169506 Msa0380520:CDS 45.0%
TTGAGCTAACTTCGAGCTCA+AGG + chr3_1:82169558-82169577 Msa0380520:exon 45.0%
TGAGCTAACTTCGAGCTCAA+GGG + chr3_1:82169559-82169578 Msa0380520:exon 45.0%
! GAATCCAAAACCGCGCTTTT+TGG - chr3_1:82168141-82168160 None:intergenic 45.0%
AGGAACTGGATCTCTTGTTG+TGG + chr3_1:82168649-82168668 Msa0380520:CDS 45.0%
! AACTGGATCTCTTGTTGTGG+TGG + chr3_1:82168652-82168671 Msa0380520:CDS 45.0%
GATTTCTTCCGAACCTCTTG+TGG + chr3_1:82168674-82168693 Msa0380520:CDS 45.0%
TGCAACTTCCACAAGAGGTT+CGG - chr3_1:82168685-82168704 None:intergenic 45.0%
TGATGAAGAATCCGAGGTTG+CGG + chr3_1:82169079-82169098 Msa0380520:CDS 45.0%
TTGCGGAACGACTTAGAATC+AGG + chr3_1:82169096-82169115 Msa0380520:CDS 45.0%
TGCGGAACGACTTAGAATCA+GGG + chr3_1:82169097-82169116 Msa0380520:CDS 45.0%
TCCCAACCAGAGACAAAGAA+AGG + chr3_1:82169487-82169506 Msa0380520:CDS 45.0%
TTGAGCTAACTTCGAGCTCA+AGG + chr3_1:82169558-82169577 Msa0380520:exon 45.0%
TGAGCTAACTTCGAGCTCAA+GGG + chr3_1:82169559-82169578 Msa0380520:exon 45.0%
TCTAAGTCGTTCCGCAACCT+CGG - chr3_1:82169093-82169112 None:intergenic 50.0%
CTAACTTCGAGCTCAAGGGA+TGG + chr3_1:82169563-82169582 Msa0380520:exon 50.0%
TCTAAGTCGTTCCGCAACCT+CGG - chr3_1:82169093-82169112 None:intergenic 50.0%
CTAACTTCGAGCTCAAGGGA+TGG + chr3_1:82169563-82169582 Msa0380520:exon 50.0%
Chromosome Type Strat End Strand Name
chr3_1 gene 82168141 82169999 82168141 ID=Msa0380520;Name=Msa0380520
chr3_1 mRNA 82168141 82169999 82168141 ID=Msa0380520-mRNA-1;Parent=Msa0380520;Name=Msa0380520-mRNA-1;_AED=0.10;_eAED=0.10;_QI=188|1|1|1|1|1|3|433|212
chr3_1 exon 82168141 82168784 82168141 ID=Msa0380520-mRNA-1:exon:20939;Parent=Msa0380520-mRNA-1
chr3_1 exon 82169065 82169118 82169065 ID=Msa0380520-mRNA-1:exon:20940;Parent=Msa0380520-mRNA-1
chr3_1 exon 82169438 82169999 82169438 ID=Msa0380520-mRNA-1:exon:20941;Parent=Msa0380520-mRNA-1
chr3_1 five_prime_UTR 82168141 82168328 82168141 ID=Msa0380520-mRNA-1:five_prime_utr;Parent=Msa0380520-mRNA-1
chr3_1 CDS 82168329 82168784 82168329 ID=Msa0380520-mRNA-1:cds;Parent=Msa0380520-mRNA-1
chr3_1 CDS 82169065 82169118 82169065 ID=Msa0380520-mRNA-1:cds;Parent=Msa0380520-mRNA-1
chr3_1 CDS 82169438 82169566 82169438 ID=Msa0380520-mRNA-1:cds;Parent=Msa0380520-mRNA-1
chr3_1 three_prime_UTR 82169567 82169999 82169567 ID=Msa0380520-mRNA-1:three_prime_utr;Parent=Msa0380520-mRNA-1
Gene Sequence

>Msa0380520

ATGTCACTAGTTGTCATTCAGCAGCAGAATATTCTGCATACAAAGTCCTTTCTAAGTGTCAGATTAGATCTGTACTTAAACAAACAACCTCAGTCTAGAATTTCCAATCTAGTTTTTAGCTTGGTTTCTAACCACAGTCATAGAAAACTATATCTTGGTGGGACAAAAATGGTACCTATTAATAAAATGAGGTACAATTTCTATCCCGTTGAATGTCAACAAGGCTTGCCTGATGAAGATGATGATGATGTCTGTCCTGTTGAATGTGTGAGAGAATTCAAGACTGATGAAGAGTTCTTGAAAATTCTAGATAAGTCTAAAGGAACTGGATCTCTTGTTGTGGTGGATTTCTTCCGAACCTCTTGTGGAAGTTGCAAGTATATTGAGCAGGGTTTTGCAAAGTTGTGCAAGAAATCTGGTAGCAATGATGTTCCTGTTATCTTTCTAAAGCATAATGTAATTGATGAGTATGATGAAGAATCCGAGGTTGCGGAACGACTTAGAATCAGGGCAGTGCCTCTCTTCCACTTCTACAAAGATGGAAAACTGTTGGAAGCATTCCCAACCAGAGACAAAGAAAGGATTGTTGCTGCCATCCTCAAGTACTCATCTCTTGAAGCAGAAGATATTTTGAGCTAA

Protein sequence

>Msa0380520

MSLVVIQQQNILHTKSFLSVRLDLYLNKQPQSRISNLVFSLVSNHSHRKLYLGGTKMVPINKMRYNFYPVECQQGLPDEDDDDVCPVECVREFKTDEEFLKILDKSKGTGSLVVVDFFRTSCGSCKYIEQGFAKLCKKSGSNDVPVIFLKHNVIDEYDEESEVAERLRIRAVPLFHFYKDGKLLEAFPTRDKERIVAAILKYSSLEAEDILS*