AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0061320


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0061320 MtrunA17_Chr1g0161421 94.767 172 9 0 1 172 1 172 1.31e-113 320
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0061320 AT2G01755.1 57.627 118 50 0 54 171 56 173 2.98e-42 139
Msa0061320 AT2G01755.2 57.627 118 50 0 54 171 62 179 3.96e-42 139

Find 76 sgRNAs with CRISPR-Local

Find 176 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AAGTCTATAGATAGAATAAA+AGG 0.213144 1_2:+19392409 Msa0061320:CDS
TTTGGTTGTTTAAGCAAATA+AGG 0.229192 1_2:+19391684 Msa0061320:five_prime_UTR
ATGGTCCATTGCATCAAATT+TGG 0.268744 1_2:-19392729 None:intergenic
AACGTTGGGAATGGCACTTT+TGG 0.287641 1_2:-19391599 None:intergenic
AACCAAAGGTGGGAGGAATT+TGG 0.292113 1_2:-19391668 None:intergenic
ACCAAAGGCTTATACCTCTT+TGG 0.304276 1_2:-19391898 None:intergenic
TGCATATTGTATGGTAAATA+TGG 0.313570 1_2:-19391737 None:intergenic
TCAAATATTGGTCGCAACTA+TGG 0.319270 1_2:+19392631 Msa0061320:three_prime_UTR
TAAGTACTTCTACTTCATTT+TGG 0.333138 1_2:-19392063 None:intergenic
GGAAAGTTGTCAATTGATAA+TGG 0.357903 1_2:-19391824 None:intergenic
CCATGGCATCATTGTCCATT+TGG 0.363669 1_2:-19391786 None:intergenic
AAATTGTGTTCTTAAGCATA+TGG 0.369867 1_2:+19392775 Msa0061320:three_prime_UTR
AAATGTTCGACATCAAATAT+TGG 0.371113 1_2:+19392619 Msa0061320:three_prime_UTR
AGAATGCTTCTTGTTGGGTC+AGG 0.383377 1_2:-19392367 None:intergenic
TTCCAAATTCCTCCCACCTT+TGG 0.387105 1_2:+19391666 Msa0061320:five_prime_UTR
GAAGATAGAGATGATGAGTA+TGG 0.389990 1_2:+19391959 Msa0061320:CDS
TTGGAAATGTCTTGAAGATA+AGG 0.391167 1_2:-19391649 None:intergenic
GCTGGAAGAATGCTTCTTGT+TGG 0.394629 1_2:-19392373 None:intergenic
CTTCTGCAGATACTCAATAT+TGG 0.406034 1_2:-19392446 None:intergenic
CTGGAAGAATGCTTCTTGTT+GGG 0.406470 1_2:-19392372 None:intergenic
GACTTTATCACTGCCCTGGC+TGG 0.412026 1_2:-19392391 None:intergenic
TGTCCATTTGGCCATACCCT+TGG 0.430122 1_2:-19391774 None:intergenic
TCAATATTGGCAGGGTCAAA+AGG 0.439860 1_2:-19392433 None:intergenic
CAACGAGGAGATTTCAAAGT+TGG 0.440151 1_2:+19391985 Msa0061320:CDS
GTCCATTTGGCCATACCCTT+GGG 0.442034 1_2:-19391773 None:intergenic
CTCTATCTTCATCCTCATCT+TGG 0.448503 1_2:-19391946 None:intergenic
TTGTCAATTGATAATGGTAT+AGG 0.449082 1_2:-19391818 None:intergenic
TGCAGATACTCAATATTGGC+AGG 0.450870 1_2:-19392442 None:intergenic
AGTAGAAGTACTTATCTTCA+AGG 0.451782 1_2:+19392072 Msa0061320:CDS
ATAAGGTTGGGATAGTGCTT+TGG 0.456496 1_2:-19391632 None:intergenic
AAATGTCTTGAAGATAAGGT+TGG 0.462844 1_2:-19391645 None:intergenic
TTCCCAAGGGTATGGCCAAA+TGG 0.469349 1_2:+19391771 Msa0061320:CDS
ACCAAAGAGGTATAAGCCTT+TGG 0.474169 1_2:+19391897 Msa0061320:CDS
ATACCCTTGGGAAGTGTAGT+AGG 0.478990 1_2:-19391761 None:intergenic
GGACAATGATGCCATGGCCT+AGG 0.481592 1_2:+19391792 Msa0061320:CDS
TTGAACCAAATTTGATGCAA+TGG 0.481681 1_2:+19392724 Msa0061320:three_prime_UTR
CAAGAAGCATTCTTCCAGCC+AGG 0.483504 1_2:+19392377 Msa0061320:CDS
TTGGCAATTACACAAACGTT+GGG 0.487876 1_2:-19391613 None:intergenic
GTAGTAGGATGCATATTGTA+TGG 0.494568 1_2:-19391746 None:intergenic
GAATGCTTCTTGTTGGGTCA+GGG 0.497042 1_2:-19392366 None:intergenic
CACAAGCTTACATTGTGAGT+TGG 0.506810 1_2:-19391845 None:intergenic
AATGTCTTGAAGATAAGGTT+GGG 0.509719 1_2:-19391644 None:intergenic
AGTCTATAGATAGAATAAAA+GGG 0.523947 1_2:+19392410 Msa0061320:CDS
TTTGCTTAAACAACCAAAGG+TGG 0.530223 1_2:-19391679 None:intergenic
GCCTCCTTGCACCACACCAA+AGG 0.530257 1_2:-19391913 None:intergenic
AATGCTTCTTGTTGGGTCAG+GGG 0.544161 1_2:-19392365 None:intergenic
TACTACACTTCCCAAGGGTA+TGG 0.545556 1_2:+19391763 Msa0061320:CDS
AATTACACAAACGTTGGGAA+TGG 0.552362 1_2:-19391608 None:intergenic
TTTGTCTTGAATTCTTCCCA+TGG 0.554335 1_2:-19392475 None:intergenic
ATCTGCAGAAGGATGTTCCA+TGG 0.555118 1_2:+19392458 Msa0061320:CDS
TCAACCATGCCACACAATGA+TGG 0.559292 1_2:-19392748 None:intergenic
GATAATGGTATAGGTAGCCT+AGG 0.559854 1_2:-19391809 None:intergenic
TTATTTGCTTAAACAACCAA+AGG 0.562137 1_2:-19391682 None:intergenic
TTGCTTAAACAACCAAAGGT+GGG 0.569736 1_2:-19391678 None:intergenic
TATAGACTTTATCACTGCCC+TGG 0.571801 1_2:-19392395 None:intergenic
TTTGGCAATTACACAAACGT+TGG 0.572622 1_2:-19391614 None:intergenic
TAAGCCTTTGGTGTGGTGCA+AGG 0.575947 1_2:+19391909 Msa0061320:CDS
ACTCATTGTTCATGCACTTG+TGG 0.576626 1_2:+19392039 Msa0061320:CDS
GCATCCTACTACACTTCCCA+AGG 0.594031 1_2:+19391757 Msa0061320:CDS
AAGAAGCATTCTTCCAGCCA+GGG 0.602074 1_2:+19392378 Msa0061320:CDS
TTCTATAGTCAATCAGCAAG+AGG 0.607447 1_2:+19392010 Msa0061320:CDS
AGGGGAAGTACCATAGCTCA+AGG 0.608247 1_2:-19392347 None:intergenic
TGGACCATCATTGTGTGGCA+TGG 0.612007 1_2:+19392744 Msa0061320:three_prime_UTR
TCTGCAGAAGGATGTTCCAT+GGG 0.613447 1_2:+19392459 Msa0061320:CDS
CAATATTGAGTATCTGCAGA+AGG 0.617485 1_2:+19392447 Msa0061320:CDS
CTTAAACAACCAAAGGTGGG+AGG 0.622050 1_2:-19391675 None:intergenic
CATCCTACTACACTTCCCAA+GGG 0.625588 1_2:+19391758 Msa0061320:CDS
CCAAATGGACAATGATGCCA+TGG 0.626699 1_2:+19391786 Msa0061320:CDS
GGTATAGGTAGCCTAGGCCA+TGG 0.632885 1_2:-19391803 None:intergenic
GCAAATTAGATACCAAGATG+AGG 0.635629 1_2:+19391934 Msa0061320:CDS
GCAGATACTCAATATTGGCA+GGG 0.648369 1_2:-19392441 None:intergenic
TTAGATTTGAGCAACCAAAG+AGG 0.657562 1_2:+19391884 Msa0061320:CDS
GCCTTTGGTGTGGTGCAAGG+AGG 0.677190 1_2:+19391912 Msa0061320:CDS
TGCAATGGACCATCATTGTG+TGG 0.707267 1_2:+19392739 Msa0061320:three_prime_UTR
AGAGGTATAAGCCTTTGGTG+TGG 0.717085 1_2:+19391902 Msa0061320:CDS
TGATGAGTATGGACACAACG+AGG 0.766111 1_2:+19391970 Msa0061320:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AAATAATTTGTTTGTTTTAT+TGG - chr1_2:19392151-19392170 None:intergenic 10.0%
!!! TTTTTTTTCTAATTAGAAAA+AGG + chr1_2:19392193-19392212 Msa0061320:intron 10.0%
!!! AAATAATTTGTTTGTTTTAT+TGG - chr1_2:19392151-19392170 None:intergenic 10.0%
!!! TTTTTTTTCTAATTAGAAAA+AGG + chr1_2:19392193-19392212 Msa0061320:intron 10.0%
!!! TTGTTTGTTTTATTGGTTAT+TGG - chr1_2:19392144-19392163 None:intergenic 20.0%
!! AAGTCTATAGATAGAATAAA+AGG + chr1_2:19392409-19392428 Msa0061320:CDS 20.0%
!! AGTCTATAGATAGAATAAAA+GGG + chr1_2:19392410-19392429 Msa0061320:CDS 20.0%
!!! TTGTTTGTTTTATTGGTTAT+TGG - chr1_2:19392144-19392163 None:intergenic 20.0%
!! AAGTCTATAGATAGAATAAA+AGG + chr1_2:19392409-19392428 Msa0061320:CDS 20.0%
!! AGTCTATAGATAGAATAAAA+GGG + chr1_2:19392410-19392429 Msa0061320:CDS 20.0%
! TTATTTGCTTAAACAACCAA+AGG - chr1_2:19391685-19391704 None:intergenic 25.0%
! TTTGGTTGTTTAAGCAAATA+AGG + chr1_2:19391684-19391703 Msa0061320:five_prime_UTR 25.0%
! TGCATATTGTATGGTAAATA+TGG - chr1_2:19391740-19391759 None:intergenic 25.0%
!!! TTGTCAATTGATAATGGTAT+AGG - chr1_2:19391821-19391840 None:intergenic 25.0%
!! TAAGTACTTCTACTTCATTT+TGG - chr1_2:19392066-19392085 None:intergenic 25.0%
! CCATTTGCAAAACAAAAATT+TGG - chr1_2:19392250-19392269 None:intergenic 25.0%
!!! CCAAATTTTTGTTTTGCAAA+TGG + chr1_2:19392247-19392266 Msa0061320:intron 25.0%
! AAATGTTCGACATCAAATAT+TGG + chr1_2:19392619-19392638 Msa0061320:three_prime_UTR 25.0%
! AAATTGTGTTCTTAAGCATA+TGG + chr1_2:19392775-19392794 Msa0061320:three_prime_UTR 25.0%
! TTATTTGCTTAAACAACCAA+AGG - chr1_2:19391685-19391704 None:intergenic 25.0%
! TTTGGTTGTTTAAGCAAATA+AGG + chr1_2:19391684-19391703 Msa0061320:five_prime_UTR 25.0%
! TGCATATTGTATGGTAAATA+TGG - chr1_2:19391740-19391759 None:intergenic 25.0%
!!! TTGTCAATTGATAATGGTAT+AGG - chr1_2:19391821-19391840 None:intergenic 25.0%
!! TAAGTACTTCTACTTCATTT+TGG - chr1_2:19392066-19392085 None:intergenic 25.0%
! CCATTTGCAAAACAAAAATT+TGG - chr1_2:19392250-19392269 None:intergenic 25.0%
!!! CCAAATTTTTGTTTTGCAAA+TGG + chr1_2:19392247-19392266 Msa0061320:intron 25.0%
! AAATGTTCGACATCAAATAT+TGG + chr1_2:19392619-19392638 Msa0061320:three_prime_UTR 25.0%
! AAATTGTGTTCTTAAGCATA+TGG + chr1_2:19392775-19392794 Msa0061320:three_prime_UTR 25.0%
AATGTCTTGAAGATAAGGTT+GGG - chr1_2:19391647-19391666 None:intergenic 30.0%
AAATGTCTTGAAGATAAGGT+TGG - chr1_2:19391648-19391667 None:intergenic 30.0%
TTGGAAATGTCTTGAAGATA+AGG - chr1_2:19391652-19391671 None:intergenic 30.0%
GGAAAGTTGTCAATTGATAA+TGG - chr1_2:19391827-19391846 None:intergenic 30.0%
!! AGTAGAAGTACTTATCTTCA+AGG + chr1_2:19392072-19392091 Msa0061320:CDS 30.0%
ACTTATCTTCAAGGTAAGTT+TGG + chr1_2:19392081-19392100 Msa0061320:intron 30.0%
TGACAAACCATTTCATTTCA+GGG + chr1_2:19392313-19392332 Msa0061320:intron 30.0%
TTGAACCAAATTTGATGCAA+TGG + chr1_2:19392724-19392743 Msa0061320:three_prime_UTR 30.0%
AATGTCTTGAAGATAAGGTT+GGG - chr1_2:19391647-19391666 None:intergenic 30.0%
AAATGTCTTGAAGATAAGGT+TGG - chr1_2:19391648-19391667 None:intergenic 30.0%
TTGGAAATGTCTTGAAGATA+AGG - chr1_2:19391652-19391671 None:intergenic 30.0%
GGAAAGTTGTCAATTGATAA+TGG - chr1_2:19391827-19391846 None:intergenic 30.0%
!! AGTAGAAGTACTTATCTTCA+AGG + chr1_2:19392072-19392091 Msa0061320:CDS 30.0%
ACTTATCTTCAAGGTAAGTT+TGG + chr1_2:19392081-19392100 Msa0061320:intron 30.0%
TGACAAACCATTTCATTTCA+GGG + chr1_2:19392313-19392332 Msa0061320:intron 30.0%
TTGAACCAAATTTGATGCAA+TGG + chr1_2:19392724-19392743 Msa0061320:three_prime_UTR 30.0%
AATTACACAAACGTTGGGAA+TGG - chr1_2:19391611-19391630 None:intergenic 35.0%
TTGGCAATTACACAAACGTT+GGG - chr1_2:19391616-19391635 None:intergenic 35.0%
TTTGGCAATTACACAAACGT+TGG - chr1_2:19391617-19391636 None:intergenic 35.0%
TTGCTTAAACAACCAAAGGT+GGG - chr1_2:19391681-19391700 None:intergenic 35.0%
TTTGCTTAAACAACCAAAGG+TGG - chr1_2:19391682-19391701 None:intergenic 35.0%
GTAGTAGGATGCATATTGTA+TGG - chr1_2:19391749-19391768 None:intergenic 35.0%
TTAGATTTGAGCAACCAAAG+AGG + chr1_2:19391884-19391903 Msa0061320:CDS 35.0%
GCAAATTAGATACCAAGATG+AGG + chr1_2:19391934-19391953 Msa0061320:CDS 35.0%
GAAGATAGAGATGATGAGTA+TGG + chr1_2:19391959-19391978 Msa0061320:CDS 35.0%
TTCTATAGTCAATCAGCAAG+AGG + chr1_2:19392010-19392029 Msa0061320:CDS 35.0%
GTGACAAACCATTTCATTTC+AGG + chr1_2:19392312-19392331 Msa0061320:intron 35.0%
GACAAACCATTTCATTTCAG+GGG + chr1_2:19392314-19392333 Msa0061320:intron 35.0%
AGAAAACCCCTGAAATGAAA+TGG - chr1_2:19392323-19392342 None:intergenic 35.0%
! TTTTCTTCATCCTTGAGCTA+TGG + chr1_2:19392337-19392356 Msa0061320:CDS 35.0%
CTTCTGCAGATACTCAATAT+TGG - chr1_2:19392449-19392468 None:intergenic 35.0%
CAATATTGAGTATCTGCAGA+AGG + chr1_2:19392447-19392466 Msa0061320:CDS 35.0%
TTTGTCTTGAATTCTTCCCA+TGG - chr1_2:19392478-19392497 None:intergenic 35.0%
TCAAATATTGGTCGCAACTA+TGG + chr1_2:19392631-19392650 Msa0061320:three_prime_UTR 35.0%
ATGGTCCATTGCATCAAATT+TGG - chr1_2:19392732-19392751 None:intergenic 35.0%
AATTACACAAACGTTGGGAA+TGG - chr1_2:19391611-19391630 None:intergenic 35.0%
TTGGCAATTACACAAACGTT+GGG - chr1_2:19391616-19391635 None:intergenic 35.0%
TTTGGCAATTACACAAACGT+TGG - chr1_2:19391617-19391636 None:intergenic 35.0%
TTGCTTAAACAACCAAAGGT+GGG - chr1_2:19391681-19391700 None:intergenic 35.0%
TTTGCTTAAACAACCAAAGG+TGG - chr1_2:19391682-19391701 None:intergenic 35.0%
GTAGTAGGATGCATATTGTA+TGG - chr1_2:19391749-19391768 None:intergenic 35.0%
TTAGATTTGAGCAACCAAAG+AGG + chr1_2:19391884-19391903 Msa0061320:CDS 35.0%
GCAAATTAGATACCAAGATG+AGG + chr1_2:19391934-19391953 Msa0061320:CDS 35.0%
GAAGATAGAGATGATGAGTA+TGG + chr1_2:19391959-19391978 Msa0061320:CDS 35.0%
TTCTATAGTCAATCAGCAAG+AGG + chr1_2:19392010-19392029 Msa0061320:CDS 35.0%
GTGACAAACCATTTCATTTC+AGG + chr1_2:19392312-19392331 Msa0061320:intron 35.0%
GACAAACCATTTCATTTCAG+GGG + chr1_2:19392314-19392333 Msa0061320:intron 35.0%
AGAAAACCCCTGAAATGAAA+TGG - chr1_2:19392323-19392342 None:intergenic 35.0%
! TTTTCTTCATCCTTGAGCTA+TGG + chr1_2:19392337-19392356 Msa0061320:CDS 35.0%
CTTCTGCAGATACTCAATAT+TGG - chr1_2:19392449-19392468 None:intergenic 35.0%
CAATATTGAGTATCTGCAGA+AGG + chr1_2:19392447-19392466 Msa0061320:CDS 35.0%
TTTGTCTTGAATTCTTCCCA+TGG - chr1_2:19392478-19392497 None:intergenic 35.0%
TCAAATATTGGTCGCAACTA+TGG + chr1_2:19392631-19392650 Msa0061320:three_prime_UTR 35.0%
ATGGTCCATTGCATCAAATT+TGG - chr1_2:19392732-19392751 None:intergenic 35.0%
ATAAGGTTGGGATAGTGCTT+TGG - chr1_2:19391635-19391654 None:intergenic 40.0%
! GATAATGGTATAGGTAGCCT+AGG - chr1_2:19391812-19391831 None:intergenic 40.0%
CACAAGCTTACATTGTGAGT+TGG - chr1_2:19391848-19391867 None:intergenic 40.0%
! ACCAAAGAGGTATAAGCCTT+TGG + chr1_2:19391897-19391916 Msa0061320:CDS 40.0%
ACCAAAGGCTTATACCTCTT+TGG - chr1_2:19391901-19391920 None:intergenic 40.0%
CTCTATCTTCATCCTCATCT+TGG - chr1_2:19391949-19391968 None:intergenic 40.0%
CAACGAGGAGATTTCAAAGT+TGG + chr1_2:19391985-19392004 Msa0061320:CDS 40.0%
ACTCATTGTTCATGCACTTG+TGG + chr1_2:19392039-19392058 Msa0061320:CDS 40.0%
CTGGAAGAATGCTTCTTGTT+GGG - chr1_2:19392375-19392394 None:intergenic 40.0%
TATAGACTTTATCACTGCCC+TGG - chr1_2:19392398-19392417 None:intergenic 40.0%
TCAATATTGGCAGGGTCAAA+AGG - chr1_2:19392436-19392455 None:intergenic 40.0%
GCAGATACTCAATATTGGCA+GGG - chr1_2:19392444-19392463 None:intergenic 40.0%
TGCAGATACTCAATATTGGC+AGG - chr1_2:19392445-19392464 None:intergenic 40.0%
ATAAGGTTGGGATAGTGCTT+TGG - chr1_2:19391635-19391654 None:intergenic 40.0%
! GATAATGGTATAGGTAGCCT+AGG - chr1_2:19391812-19391831 None:intergenic 40.0%
CACAAGCTTACATTGTGAGT+TGG - chr1_2:19391848-19391867 None:intergenic 40.0%
! ACCAAAGAGGTATAAGCCTT+TGG + chr1_2:19391897-19391916 Msa0061320:CDS 40.0%
ACCAAAGGCTTATACCTCTT+TGG - chr1_2:19391901-19391920 None:intergenic 40.0%
CTCTATCTTCATCCTCATCT+TGG - chr1_2:19391949-19391968 None:intergenic 40.0%
CAACGAGGAGATTTCAAAGT+TGG + chr1_2:19391985-19392004 Msa0061320:CDS 40.0%
ACTCATTGTTCATGCACTTG+TGG + chr1_2:19392039-19392058 Msa0061320:CDS 40.0%
CTGGAAGAATGCTTCTTGTT+GGG - chr1_2:19392375-19392394 None:intergenic 40.0%
TATAGACTTTATCACTGCCC+TGG - chr1_2:19392398-19392417 None:intergenic 40.0%
TCAATATTGGCAGGGTCAAA+AGG - chr1_2:19392436-19392455 None:intergenic 40.0%
GCAGATACTCAATATTGGCA+GGG - chr1_2:19392444-19392463 None:intergenic 40.0%
TGCAGATACTCAATATTGGC+AGG - chr1_2:19392445-19392464 None:intergenic 40.0%
! ACGTTGGGAATGGCACTTTT+GGG - chr1_2:19391601-19391620 None:intergenic 45.0%
! AACGTTGGGAATGGCACTTT+TGG - chr1_2:19391602-19391621 None:intergenic 45.0%
TTCCAAATTCCTCCCACCTT+TGG + chr1_2:19391666-19391685 Msa0061320:five_prime_UTR 45.0%
AACCAAAGGTGGGAGGAATT+TGG - chr1_2:19391671-19391690 None:intergenic 45.0%
CTTAAACAACCAAAGGTGGG+AGG - chr1_2:19391678-19391697 None:intergenic 45.0%
CATCCTACTACACTTCCCAA+GGG + chr1_2:19391758-19391777 Msa0061320:CDS 45.0%
! ATACCCTTGGGAAGTGTAGT+AGG - chr1_2:19391764-19391783 None:intergenic 45.0%
TACTACACTTCCCAAGGGTA+TGG + chr1_2:19391763-19391782 Msa0061320:CDS 45.0%
CCATGGCATCATTGTCCATT+TGG - chr1_2:19391789-19391808 None:intergenic 45.0%
CCAAATGGACAATGATGCCA+TGG + chr1_2:19391786-19391805 Msa0061320:CDS 45.0%
! AGAGGTATAAGCCTTTGGTG+TGG + chr1_2:19391902-19391921 Msa0061320:CDS 45.0%
TGATGAGTATGGACACAACG+AGG + chr1_2:19391970-19391989 Msa0061320:CDS 45.0%
AATGCTTCTTGTTGGGTCAG+GGG - chr1_2:19392368-19392387 None:intergenic 45.0%
GAATGCTTCTTGTTGGGTCA+GGG - chr1_2:19392369-19392388 None:intergenic 45.0%
AGAATGCTTCTTGTTGGGTC+AGG - chr1_2:19392370-19392389 None:intergenic 45.0%
GCTGGAAGAATGCTTCTTGT+TGG - chr1_2:19392376-19392395 None:intergenic 45.0%
!! AAGAAGCATTCTTCCAGCCA+GGG + chr1_2:19392378-19392397 Msa0061320:CDS 45.0%
ATCTGCAGAAGGATGTTCCA+TGG + chr1_2:19392458-19392477 Msa0061320:CDS 45.0%
TCTGCAGAAGGATGTTCCAT+GGG + chr1_2:19392459-19392478 Msa0061320:CDS 45.0%
TGCAATGGACCATCATTGTG+TGG + chr1_2:19392739-19392758 Msa0061320:three_prime_UTR 45.0%
TCAACCATGCCACACAATGA+TGG - chr1_2:19392751-19392770 None:intergenic 45.0%
! ACGTTGGGAATGGCACTTTT+GGG - chr1_2:19391601-19391620 None:intergenic 45.0%
! AACGTTGGGAATGGCACTTT+TGG - chr1_2:19391602-19391621 None:intergenic 45.0%
TTCCAAATTCCTCCCACCTT+TGG + chr1_2:19391666-19391685 Msa0061320:five_prime_UTR 45.0%
AACCAAAGGTGGGAGGAATT+TGG - chr1_2:19391671-19391690 None:intergenic 45.0%
CTTAAACAACCAAAGGTGGG+AGG - chr1_2:19391678-19391697 None:intergenic 45.0%
CATCCTACTACACTTCCCAA+GGG + chr1_2:19391758-19391777 Msa0061320:CDS 45.0%
! ATACCCTTGGGAAGTGTAGT+AGG - chr1_2:19391764-19391783 None:intergenic 45.0%
TACTACACTTCCCAAGGGTA+TGG + chr1_2:19391763-19391782 Msa0061320:CDS 45.0%
CCATGGCATCATTGTCCATT+TGG - chr1_2:19391789-19391808 None:intergenic 45.0%
CCAAATGGACAATGATGCCA+TGG + chr1_2:19391786-19391805 Msa0061320:CDS 45.0%
! AGAGGTATAAGCCTTTGGTG+TGG + chr1_2:19391902-19391921 Msa0061320:CDS 45.0%
TGATGAGTATGGACACAACG+AGG + chr1_2:19391970-19391989 Msa0061320:CDS 45.0%
AATGCTTCTTGTTGGGTCAG+GGG - chr1_2:19392368-19392387 None:intergenic 45.0%
GAATGCTTCTTGTTGGGTCA+GGG - chr1_2:19392369-19392388 None:intergenic 45.0%
AGAATGCTTCTTGTTGGGTC+AGG - chr1_2:19392370-19392389 None:intergenic 45.0%
GCTGGAAGAATGCTTCTTGT+TGG - chr1_2:19392376-19392395 None:intergenic 45.0%
!! AAGAAGCATTCTTCCAGCCA+GGG + chr1_2:19392378-19392397 Msa0061320:CDS 45.0%
ATCTGCAGAAGGATGTTCCA+TGG + chr1_2:19392458-19392477 Msa0061320:CDS 45.0%
TCTGCAGAAGGATGTTCCAT+GGG + chr1_2:19392459-19392478 Msa0061320:CDS 45.0%
TGCAATGGACCATCATTGTG+TGG + chr1_2:19392739-19392758 Msa0061320:three_prime_UTR 45.0%
TCAACCATGCCACACAATGA+TGG - chr1_2:19392751-19392770 None:intergenic 45.0%
GCATCCTACTACACTTCCCA+AGG + chr1_2:19391757-19391776 Msa0061320:CDS 50.0%
! TTCCCAAGGGTATGGCCAAA+TGG + chr1_2:19391771-19391790 Msa0061320:CDS 50.0%
GTCCATTTGGCCATACCCTT+GGG - chr1_2:19391776-19391795 None:intergenic 50.0%
TGTCCATTTGGCCATACCCT+TGG - chr1_2:19391777-19391796 None:intergenic 50.0%
! TAAGCCTTTGGTGTGGTGCA+AGG + chr1_2:19391909-19391928 Msa0061320:CDS 50.0%
!! AGGGGAAGTACCATAGCTCA+AGG - chr1_2:19392350-19392369 None:intergenic 50.0%
!! CAAGAAGCATTCTTCCAGCC+AGG + chr1_2:19392377-19392396 Msa0061320:CDS 50.0%
TGGACCATCATTGTGTGGCA+TGG + chr1_2:19392744-19392763 Msa0061320:three_prime_UTR 50.0%
GCATCCTACTACACTTCCCA+AGG + chr1_2:19391757-19391776 Msa0061320:CDS 50.0%
! TTCCCAAGGGTATGGCCAAA+TGG + chr1_2:19391771-19391790 Msa0061320:CDS 50.0%
GTCCATTTGGCCATACCCTT+GGG - chr1_2:19391776-19391795 None:intergenic 50.0%
TGTCCATTTGGCCATACCCT+TGG - chr1_2:19391777-19391796 None:intergenic 50.0%
! TAAGCCTTTGGTGTGGTGCA+AGG + chr1_2:19391909-19391928 Msa0061320:CDS 50.0%
!! AGGGGAAGTACCATAGCTCA+AGG - chr1_2:19392350-19392369 None:intergenic 50.0%
!! CAAGAAGCATTCTTCCAGCC+AGG + chr1_2:19392377-19392396 Msa0061320:CDS 50.0%
TGGACCATCATTGTGTGGCA+TGG + chr1_2:19392744-19392763 Msa0061320:three_prime_UTR 50.0%
GGACAATGATGCCATGGCCT+AGG + chr1_2:19391792-19391811 Msa0061320:CDS 55.0%
GGTATAGGTAGCCTAGGCCA+TGG - chr1_2:19391806-19391825 None:intergenic 55.0%
GACTTTATCACTGCCCTGGC+TGG - chr1_2:19392394-19392413 None:intergenic 55.0%
GGACAATGATGCCATGGCCT+AGG + chr1_2:19391792-19391811 Msa0061320:CDS 55.0%
GGTATAGGTAGCCTAGGCCA+TGG - chr1_2:19391806-19391825 None:intergenic 55.0%
GACTTTATCACTGCCCTGGC+TGG - chr1_2:19392394-19392413 None:intergenic 55.0%
! GCCTTTGGTGTGGTGCAAGG+AGG + chr1_2:19391912-19391931 Msa0061320:CDS 60.0%
GCCTCCTTGCACCACACCAA+AGG - chr1_2:19391916-19391935 None:intergenic 60.0%
! GCCTTTGGTGTGGTGCAAGG+AGG + chr1_2:19391912-19391931 Msa0061320:CDS 60.0%
GCCTCCTTGCACCACACCAA+AGG - chr1_2:19391916-19391935 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
chr1_2 gene 19391577 19392803 19391577 ID=Msa0061320;Name=Msa0061320
chr1_2 mRNA 19391577 19392803 19391577 ID=Msa0061320-mRNA-1;Parent=Msa0061320;Name=Msa0061320-mRNA-1;_AED=0.01;_eAED=0.01;_QI=178|1|1|1|1|1|2|290|172
chr1_2 exon 19391577 19392093 19391577 ID=Msa0061320-mRNA-1:exon:7527;Parent=Msa0061320-mRNA-1
chr1_2 exon 19392334 19392803 19392334 ID=Msa0061320-mRNA-1:exon:7528;Parent=Msa0061320-mRNA-1
chr1_2 five_prime_UTR 19391577 19391754 19391577 ID=Msa0061320-mRNA-1:five_prime_utr;Parent=Msa0061320-mRNA-1
chr1_2 CDS 19391755 19392093 19391755 ID=Msa0061320-mRNA-1:cds;Parent=Msa0061320-mRNA-1
chr1_2 CDS 19392334 19392513 19392334 ID=Msa0061320-mRNA-1:cds;Parent=Msa0061320-mRNA-1
chr1_2 three_prime_UTR 19392514 19392803 19392514 ID=Msa0061320-mRNA-1:three_prime_utr;Parent=Msa0061320-mRNA-1
Gene Sequence

>Msa0061320

ATGCATCCTACTACACTTCCCAAGGGTATGGCCAAATGGACAATGATGCCATGGCCTAGGCTACCTATACCATTATCAATTGACAACTTTCCAACTCACAATGTAAGCTTGTGTTTTGACTTGAAAGAATTAGATTTGAGCAACCAAAGAGGTATAAGCCTTTGGTGTGGTGCAAGGAGGCAAATTAGATACCAAGATGAGGATGAAGATAGAGATGATGAGTATGGACACAACGAGGAGATTTCAAAGTTGGAATTCTATAGTCAATCAGCAAGAGGAGAAGCACTCATTGTTCATGCACTTGTGGACCAAAATGAAGTAGAAGTACTTATCTTCAAGGGGTTTTCTTCATCCTTGAGCTATGGTACTTCCCCTGACCCAACAAGAAGCATTCTTCCAGCCAGGGCAGTGATAAAGTCTATAGATAGAATAAAAGGGCCTTTTGACCCTGCCAATATTGAGTATCTGCAGAAGGATGTTCCATGGGAAGAATTCAAGACAAATATTCTTTCTAGCTAA

Protein sequence

>Msa0061320

MHPTTLPKGMAKWTMMPWPRLPIPLSIDNFPTHNVSLCFDLKELDLSNQRGISLWCGARRQIRYQDEDEDRDDEYGHNEEISKLEFYSQSARGEALIVHALVDQNEVEVLIFKGFSSSLSYGTSPDPTRSILPARAVIKSIDRIKGPFDPANIEYLQKDVPWEEFKTNILSS*