Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1124310 | XP_003625683.1 | 94.545 | 55 | 3 | 0 | 1 | 55 | 1 | 55 | 8.50e-28 | 106 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1124310 | sp|Q7XSQ7|TRL33_ORYSJ | 62.500 | 56 | 20 | 1 | 1 | 55 | 1 | 56 | 2.87e-16 | 69.7 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1124310 | G7L3W2 | 94.545 | 55 | 3 | 0 | 1 | 55 | 1 | 55 | 4.06e-28 | 106 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0002490 | Msa1124310 | 0.801506 | 8.721300e-49 | -8.615850e-47 |
| Msa0014710 | Msa1124310 | 0.819031 | 1.437998e-52 | -8.615850e-47 |
| Msa0045790 | Msa1124310 | 0.802534 | 5.361490e-49 | -8.615850e-47 |
| Msa0046160 | Msa1124310 | 0.801586 | 8.395326e-49 | -8.615850e-47 |
| Msa0076000 | Msa1124310 | 0.804808 | 1.808719e-49 | -8.615850e-47 |
| Msa0089380 | Msa1124310 | 0.801863 | 7.366804e-49 | -8.615850e-47 |
| Msa0094920 | Msa1124310 | 0.820087 | 8.254904e-53 | -8.615850e-47 |
| Msa0105420 | Msa1124310 | 0.807495 | 4.915593e-50 | -8.615850e-47 |
| Msa0115810 | Msa1124310 | 0.806275 | 8.903755e-50 | -8.615850e-47 |
| Msa0619070 | Msa1124310 | 0.800397 | 1.469289e-48 | -8.615850e-47 |
| Msa0619470 | Msa1124310 | 0.817051 | 4.030506e-52 | -8.615850e-47 |
| Msa0619510 | Msa1124310 | 0.803606 | 3.217012e-49 | -8.615850e-47 |
| Msa0623080 | Msa1124310 | 0.800505 | 1.396933e-48 | -8.615850e-47 |
| Msa0623700 | Msa1124310 | 0.808382 | 3.183296e-50 | -8.615850e-47 |
| Msa0633840 | Msa1124310 | 0.803105 | 4.085247e-49 | -8.615850e-47 |
| Msa0638070 | Msa1124310 | 0.807122 | 5.897824e-50 | -8.615850e-47 |
| Msa0638280 | Msa1124310 | 0.806708 | 7.214045e-50 | -8.615850e-47 |
| Msa0638320 | Msa1124310 | 0.802262 | 6.099439e-49 | -8.615850e-47 |
| Msa0644840 | Msa1124310 | 0.805302 | 1.425250e-49 | -8.615850e-47 |
| Msa0677270 | Msa1124310 | 0.810200 | 1.297587e-50 | -8.615850e-47 |
| Msa0682330 | Msa1124310 | 0.813097 | 3.041884e-51 | -8.615850e-47 |
| Msa0682550 | Msa1124310 | 0.824567 | 7.525355e-54 | -8.615850e-47 |
| Msa0682900 | Msa1124310 | 0.809820 | 1.566609e-50 | -8.615850e-47 |
| Msa0682950 | Msa1124310 | 0.801659 | 8.113439e-49 | -8.615850e-47 |
| Msa0684500 | Msa1124310 | 0.801800 | 7.588298e-49 | -8.615850e-47 |
| Msa0689010 | Msa1124310 | 0.811701 | 6.138927e-51 | -8.615850e-47 |
| Msa0691050 | Msa1124310 | 0.813955 | 1.969359e-51 | -8.615850e-47 |
| Msa0693380 | Msa1124310 | 0.846451 | 2.153761e-59 | -8.615850e-47 |
| Msa0698060 | Msa1124310 | 0.807807 | 4.221080e-50 | -8.615850e-47 |
| Msa0703230 | Msa1124310 | 0.823240 | 1.540460e-53 | -8.615850e-47 |
| Msa0704600 | Msa1124310 | 0.804638 | 1.962222e-49 | -8.615850e-47 |
| Msa0715110 | Msa1124310 | 0.824384 | 8.309333e-54 | -8.615850e-47 |
| Msa0744030 | Msa1124310 | 0.815086 | 1.107132e-51 | -8.615850e-47 |
| Msa0744040 | Msa1124310 | 0.805088 | 1.580287e-49 | -8.615850e-47 |
| Msa0750880 | Msa1124310 | 0.811656 | 6.278411e-51 | -8.615850e-47 |
| Msa0750920 | Msa1124310 | 0.810355 | 1.201376e-50 | -8.615850e-47 |
| Msa0756630 | Msa1124310 | -0.801959 | 7.038418e-49 | -8.615850e-47 |
| Msa0760380 | Msa1124310 | 0.814917 | 1.206461e-51 | -8.615850e-47 |
| Msa0770350 | Msa1124310 | 0.820661 | 6.095670e-53 | -8.615850e-47 |
| Msa0778320 | Msa1124310 | 0.811143 | 8.114616e-51 | -8.615850e-47 |
| Msa0825340 | Msa1124310 | 0.800342 | 1.507833e-48 | -8.615850e-47 |
| Msa0826190 | Msa1124310 | 0.802687 | 4.983810e-49 | -8.615850e-47 |
| Msa0124340 | Msa1124310 | 0.820293 | 7.404995e-53 | -8.615850e-47 |
| Msa0149000 | Msa1124310 | 0.818114 | 2.320336e-52 | -8.615850e-47 |
| Msa0166870 | Msa1124310 | 0.800174 | 1.631184e-48 | -8.615850e-47 |
| Msa0173990 | Msa1124310 | 0.802394 | 5.727073e-49 | -8.615850e-47 |
| Msa0181360 | Msa1124310 | 0.817388 | 3.383559e-52 | -8.615850e-47 |
| Msa0183590 | Msa1124310 | 0.803400 | 3.550428e-49 | -8.615850e-47 |
| Msa0185590 | Msa1124310 | 0.819294 | 1.252778e-52 | -8.615850e-47 |
| Msa0186890 | Msa1124310 | 0.823410 | 1.406179e-53 | -8.615850e-47 |
| Msa0188630 | Msa1124310 | 0.807036 | 6.148930e-50 | -8.615850e-47 |
| Msa0205850 | Msa1124310 | 0.824367 | 8.389014e-54 | -8.615850e-47 |
| Msa0217400 | Msa1124310 | 0.802195 | 6.294635e-49 | -8.615850e-47 |
| Msa0219070 | Msa1124310 | 0.804117 | 2.519211e-49 | -8.615850e-47 |
| Msa0223690 | Msa1124310 | 0.802690 | 4.976806e-49 | -8.615850e-47 |
| Msa0227400 | Msa1124310 | 0.812192 | 4.798098e-51 | -8.615850e-47 |
| Msa0235890 | Msa1124310 | 0.800415 | 1.457069e-48 | -8.615850e-47 |
| Msa0366240 | Msa1124310 | 0.806362 | 8.536926e-50 | -8.615850e-47 |
| Msa0372660 | Msa1124310 | 0.802678 | 5.006130e-49 | -8.615850e-47 |
| Msa0389340 | Msa1124310 | 0.813077 | 3.072556e-51 | -8.615850e-47 |
| Msa0393950 | Msa1124310 | 0.812284 | 4.580808e-51 | -8.615850e-47 |
| Msa0395870 | Msa1124310 | 0.809323 | 2.002881e-50 | -8.615850e-47 |
| Msa0402330 | Msa1124310 | 0.834173 | 3.492360e-56 | -8.615850e-47 |
| Msa0415810 | Msa1124310 | 0.820444 | 6.838914e-53 | -8.615850e-47 |
| Msa0417880 | Msa1124310 | 0.804065 | 2.582924e-49 | -8.615850e-47 |
| Msa0419820 | Msa1124310 | 0.811863 | 5.658049e-51 | -8.615850e-47 |
| Msa0423900 | Msa1124310 | 0.812098 | 5.029221e-51 | -8.615850e-47 |
| Msa0426330 | Msa1124310 | 0.814471 | 1.514635e-51 | -8.615850e-47 |
| Msa0452960 | Msa1124310 | 0.808757 | 2.647928e-50 | -8.615850e-47 |
| Msa0460930 | Msa1124310 | 0.824282 | 8.784299e-54 | -8.615850e-47 |
| Msa0467900 | Msa1124310 | -0.804405 | 2.194804e-49 | -8.615850e-47 |
| Msa0480320 | Msa1124310 | 0.810000 | 1.432912e-50 | -8.615850e-47 |
| Msa0993530 | Msa1124310 | 0.813988 | 1.936315e-51 | -8.615850e-47 |
| Msa1019020 | Msa1124310 | 0.804632 | 1.968243e-49 | -8.615850e-47 |
| Msa1040890 | Msa1124310 | 0.818471 | 1.926984e-52 | -8.615850e-47 |
| Msa1041520 | Msa1124310 | 0.808565 | 2.909673e-50 | -8.615850e-47 |
| Msa1046300 | Msa1124310 | 0.810859 | 9.348900e-51 | -8.615850e-47 |
| Msa1082500 | Msa1124310 | 0.849744 | 2.656854e-60 | -8.615850e-47 |
| Msa1082700 | Msa1124310 | 0.814522 | 1.476367e-51 | -8.615850e-47 |
| Msa1083210 | Msa1124310 | 0.825984 | 3.478371e-54 | -8.615850e-47 |
| Msa1087470 | Msa1124310 | 0.801479 | 8.832991e-49 | -8.615850e-47 |
| Msa1098400 | Msa1124310 | 0.805591 | 1.240004e-49 | -8.615850e-47 |
| Msa0239510 | Msa1124310 | 0.822287 | 2.567746e-53 | -8.615850e-47 |
| Msa0241640 | Msa1124310 | 0.804889 | 1.739083e-49 | -8.615850e-47 |
| Msa0248970 | Msa1124310 | 0.803372 | 3.597785e-49 | -8.615850e-47 |
| Msa0260210 | Msa1124310 | 0.817020 | 4.095157e-52 | -8.615850e-47 |
| Msa0260810 | Msa1124310 | 0.800048 | 1.729992e-48 | -8.615850e-47 |
| Msa0276920 | Msa1124310 | 0.840542 | 8.167166e-58 | -8.615850e-47 |
| Msa0287310 | Msa1124310 | 0.825619 | 4.246857e-54 | -8.615850e-47 |
| Msa0296560 | Msa1124310 | 0.800585 | 1.345384e-48 | -8.615850e-47 |
| Msa0299890 | Msa1124310 | 0.802122 | 6.517066e-49 | -8.615850e-47 |
| Msa0304290 | Msa1124310 | 0.815197 | 1.045775e-51 | -8.615850e-47 |
| Msa0304330 | Msa1124310 | 0.815391 | 9.471438e-52 | -8.615850e-47 |
| Msa0305890 | Msa1124310 | 0.816761 | 4.681515e-52 | -8.615850e-47 |
| Msa0311860 | Msa1124310 | 0.801873 | 7.332514e-49 | -8.615850e-47 |
| Msa0315240 | Msa1124310 | 0.808936 | 2.423644e-50 | -8.615850e-47 |
| Msa0317510 | Msa1124310 | 0.802721 | 4.905746e-49 | -8.615850e-47 |
| Msa0325850 | Msa1124310 | 0.826406 | 2.760884e-54 | -8.615850e-47 |
| Msa0333720 | Msa1124310 | -0.802155 | 6.414383e-49 | -8.615850e-47 |
| Msa0334040 | Msa1124310 | 0.806366 | 8.518495e-50 | -8.615850e-47 |
| Msa0334350 | Msa1124310 | 0.808902 | 2.465223e-50 | -8.615850e-47 |
| Msa0335040 | Msa1124310 | 0.840320 | 9.336007e-58 | -8.615850e-47 |
| Msa0340810 | Msa1124310 | 0.812739 | 3.643745e-51 | -8.615850e-47 |
| Msa0344870 | Msa1124310 | 0.811965 | 5.377877e-51 | -8.615850e-47 |
| Msa0350990 | Msa1124310 | 0.821027 | 5.021981e-53 | -8.615850e-47 |
| Msa0351030 | Msa1124310 | 0.821239 | 4.487367e-53 | -8.615850e-47 |
| Msa0351080 | Msa1124310 | 0.818986 | 1.472334e-52 | -8.615850e-47 |
| Msa0355270 | Msa1124310 | 0.830854 | 2.323238e-55 | -8.615850e-47 |
| Msa0356890 | Msa1124310 | -0.814740 | 1.321152e-51 | -8.615850e-47 |
| Msa1108790 | Msa1124310 | 0.801934 | 7.122652e-49 | -8.615850e-47 |
| Msa1124310 | Msa1127830 | 0.822379 | 2.445103e-53 | -8.615850e-47 |
| Msa1124310 | Msa1127890 | 0.814191 | 1.746957e-51 | -8.615850e-47 |
| Msa1124310 | Msa1151910 | 0.806465 | 8.120227e-50 | -8.615850e-47 |
| Msa1124310 | Msa1152510 | 0.828807 | 7.320607e-55 | -8.615850e-47 |
| Msa1124310 | Msa1152990 | 0.807763 | 4.312708e-50 | -8.615850e-47 |
| Msa1124310 | Msa1165520 | 0.815359 | 9.628120e-52 | -8.615850e-47 |
| Msa1124310 | Msa1166410 | 0.806386 | 8.435497e-50 | -8.615850e-47 |
| Msa1124310 | Msa1172670 | 0.813113 | 3.016905e-51 | -8.615850e-47 |
| Msa1124310 | Msa1178610 | 0.814929 | 1.199136e-51 | -8.615850e-47 |
| Msa1124310 | Msa1185540 | 0.824187 | 9.244860e-54 | -8.615850e-47 |
| Msa1124310 | Msa1187840 | 0.801984 | 6.955050e-49 | -8.615850e-47 |
| Msa1124310 | Msa1217860 | 0.812664 | 3.782827e-51 | -8.615850e-47 |
| Msa1124310 | Msa1231240 | 0.813527 | 2.446740e-51 | -8.615850e-47 |
| Msa1124310 | Msa1233890 | 0.811898 | 5.560309e-51 | -8.615850e-47 |
| Msa1124310 | Msa1249920 | 0.826130 | 3.211366e-54 | -8.615850e-47 |
| Msa1124310 | Msa1252190 | 0.811929 | 5.474661e-51 | -8.615850e-47 |
| Msa1124310 | Msa1267840 | 0.804293 | 2.315406e-49 | -8.615850e-47 |
| Msa1124310 | Msa1274060 | 0.804651 | 1.950173e-49 | -8.615850e-47 |
| Msa1124310 | Msa1276190 | 0.803676 | 3.111768e-49 | -8.615850e-47 |
| Msa1124310 | Msa1291350 | 0.817717 | 2.852796e-52 | -8.615850e-47 |
| Msa1124310 | Msa1292830 | 0.805225 | 1.479271e-49 | -8.615850e-47 |
| Msa1124310 | Msa1311960 | 0.814014 | 1.910945e-51 | -8.615850e-47 |
| Msa1124310 | Msa1314340 | 0.820017 | 8.566268e-53 | -8.615850e-47 |
| Msa1124310 | Msa1316830 | 0.800125 | 1.669032e-48 | -8.615850e-47 |
| Msa1124310 | Msa1340650 | 0.802658 | 5.054103e-49 | -8.615850e-47 |
| Msa1124310 | Msa1343070 | 0.819650 | 1.038963e-52 | -8.615850e-47 |
| Msa1124310 | Msa1346370 | 0.804097 | 2.544251e-49 | -8.615850e-47 |
| Msa1124310 | Msa1348880 | 0.814550 | 1.455011e-51 | -8.615850e-47 |
| Msa1124310 | Msa1353060 | 0.815869 | 7.411820e-52 | -8.615850e-47 |
| Msa1124310 | Msa1366600 | 0.812147 | 4.906131e-51 | -8.615850e-47 |
| Msa1124310 | Msa1371430 | 0.814169 | 1.767009e-51 | -8.615850e-47 |
| Msa1124310 | Msa1384350 | 0.808648 | 2.792770e-50 | -8.615850e-47 |
| Msa1124310 | Msa1390230 | 0.806728 | 7.143538e-50 | -8.615850e-47 |
| Msa1124310 | Msa1397810 | 0.809525 | 1.812150e-50 | -8.615850e-47 |
| Msa1124310 | Msa1404540 | 0.810942 | 8.969721e-51 | -8.615850e-47 |
| Msa1124310 | Msa1408790 | 0.809837 | 1.553282e-50 | -8.615850e-47 |
| Msa1124310 | Msa1415640 | 0.815975 | 7.018479e-52 | -8.615850e-47 |
| Msa1124310 | Msa1415940 | 0.815163 | 1.064451e-51 | -8.615850e-47 |
| Msa1124310 | Msa1424680 | 0.800855 | 1.184665e-48 | -8.615850e-47 |
| Msa1124310 | Msa1427060 | 0.835405 | 1.710464e-56 | -8.615850e-47 |
| Msa1124310 | Msa1436040 | 0.801283 | 9.688849e-49 | -8.615850e-47 |
| Msa1124310 | Msa1439960 | 0.813741 | 2.195287e-51 | -8.615850e-47 |
| Msa1124310 | Msa1460020 | 0.809836 | 1.554268e-50 | -8.615850e-47 |
| Msa1124310 | Msa1466460 | 0.806251 | 9.005642e-50 | -8.615850e-47 |
| Msa0484780 | Msa1124310 | 0.850189 | 1.994777e-60 | -8.615850e-47 |
| Msa0495320 | Msa1124310 | 0.804556 | 2.041354e-49 | -8.615850e-47 |
| Msa0505770 | Msa1124310 | 0.820060 | 8.373952e-53 | -8.615850e-47 |
| Msa0506890 | Msa1124310 | 0.841666 | 4.137538e-58 | -8.615850e-47 |
| Msa0506940 | Msa1124310 | 0.811454 | 6.945789e-51 | -8.615850e-47 |
| Msa0509610 | Msa1124310 | 0.803360 | 3.617751e-49 | -8.615850e-47 |
| Msa0516320 | Msa1124310 | 0.802726 | 4.893573e-49 | -8.615850e-47 |
| Msa0517490 | Msa1124310 | 0.803009 | 4.276243e-49 | -8.615850e-47 |
| Msa0521880 | Msa1124310 | 0.829740 | 4.346654e-55 | -8.615850e-47 |
| Msa0526890 | Msa1124310 | 0.841106 | 5.809142e-58 | -8.615850e-47 |
| Msa0541860 | Msa1124310 | 0.823602 | 1.268070e-53 | -8.615850e-47 |
| Msa0542160 | Msa1124310 | 0.808673 | 2.759134e-50 | -8.615850e-47 |
| Msa0545060 | Msa1124310 | 0.801959 | 7.039622e-49 | -8.615850e-47 |
| Msa0547360 | Msa1124310 | 0.818604 | 1.797725e-52 | -8.615850e-47 |
| Msa0547400 | Msa1124310 | 0.806156 | 9.433771e-50 | -8.615850e-47 |
| Msa0557070 | Msa1124310 | 0.815641 | 8.332634e-52 | -8.615850e-47 |
| Msa0587940 | Msa1124310 | 0.802443 | 5.598061e-49 | -8.615850e-47 |
| Msa0593650 | Msa1124310 | 0.811760 | 5.957648e-51 | -8.615850e-47 |
| Msa0850960 | Msa1124310 | 0.822638 | 2.128370e-53 | -8.615850e-47 |
| Msa0856920 | Msa1124310 | 0.804657 | 1.944177e-49 | -8.615850e-47 |
| Msa0863930 | Msa1124310 | 0.806807 | 6.875807e-50 | -8.615850e-47 |
| Msa0881020 | Msa1124310 | 0.824528 | 7.686492e-54 | -8.615850e-47 |
| Msa0881030 | Msa1124310 | 0.828290 | 9.759795e-55 | -8.615850e-47 |
| Msa0906690 | Msa1124310 | 0.806895 | 6.586020e-50 | -8.615850e-47 |
| Msa0908170 | Msa1124310 | 0.804480 | 2.116678e-49 | -8.615850e-47 |
| Msa0933440 | Msa1124310 | 0.847424 | 1.166761e-59 | -8.615850e-47 |
| Msa0954130 | Msa1124310 | 0.803109 | 4.077580e-49 | -8.615850e-47 |
| Msa0954550 | Msa1124310 | 0.821874 | 3.201897e-53 | -8.615850e-47 |
| Msa0976250 | Msa1124310 | 0.804592 | 2.006408e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1124310 | MtrunA17_Chr7g0264661 | 94.545 | 55 | 3 | 0 | 1 | 55 | 1 | 55 | 7.81e-32 | 106 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 16 sgRNAs with CRISPR-Local
Find 25 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTGCAGGCTGTTATCAATTA+TGG | 0.292579 | 7_3:-75499895 | Msa1124310:intron |
| ATGGTTGGTTACGGGAGTTT+TGG | 0.322877 | 7_3:+75499992 | None:intergenic |
| TCCCTTCTTCCATATCAAAA+TGG | 0.350979 | 7_3:+75500132 | None:intergenic |
| CAAGTTAGAGTGACGGTTGA+TGG | 0.369290 | 7_3:+75500070 | None:intergenic |
| TTATCAATTATGGCGCTTCA+TGG | 0.376385 | 7_3:-75499885 | None:intergenic |
| GAAGAAGGGAACACAAAGAA+AGG | 0.486998 | 7_3:-75500119 | Msa1124310:CDS |
| TCCATATCAAAATGGTGAAA+CGG | 0.490271 | 7_3:+75500140 | None:intergenic |
| AAGTTAGAGTGACGGTTGAT+GGG | 0.529250 | 7_3:+75500071 | None:intergenic |
| GAAATCATCATCGGAGGAAG+CGG | 0.552988 | 7_3:+75500043 | None:intergenic |
| AAGAAAGGGTTGGAAGGAAG+TGG | 0.557845 | 7_3:-75500104 | Msa1124310:CDS |
| CGGATTTCAAGTTAGAGTGA+CGG | 0.570849 | 7_3:+75500063 | None:intergenic |
| AGGGAACACAAAGAAAGGGT+TGG | 0.591036 | 7_3:-75500114 | Msa1124310:CDS |
| AACACAAAGAAAGGGTTGGA+AGG | 0.614375 | 7_3:-75500110 | Msa1124310:CDS |
| AAGAAGGGAACACAAAGAAA+GGG | 0.617658 | 7_3:-75500118 | Msa1124310:CDS |
| GATTTGTGTGAAATCATCAT+CGG | 0.655539 | 7_3:+75500034 | None:intergenic |
| TTGTGTGAAATCATCATCGG+AGG | 0.661069 | 7_3:+75500037 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATAAAAAAGTGTAGTAAGAA+TGG | + | chr7_3:75500108-75500127 | None:intergenic | 20.0% |
| TGAAAAACACGTTCAGATAA+AGG | + | chr7_3:75499915-75499934 | None:intergenic | 30.0% | |
| TCCATATCAAAATGGTGAAA+CGG | + | chr7_3:75499941-75499960 | None:intergenic | 30.0% | |
| !! | ACCATTTTGATATGGAAGAA+GGG | - | chr7_3:75499945-75499964 | Msa1124310:intron | 30.0% |
| GATTTGTGTGAAATCATCAT+CGG | + | chr7_3:75500047-75500066 | None:intergenic | 30.0% | |
| ! | AAAAGTGTAGTAAGAATGGT+TGG | + | chr7_3:75500104-75500123 | None:intergenic | 30.0% |
| !! | TCCGTTTCACCATTTTGATA+TGG | - | chr7_3:75499937-75499956 | Msa1124310:intron | 35.0% |
| !! | CACCATTTTGATATGGAAGA+AGG | - | chr7_3:75499944-75499963 | Msa1124310:intron | 35.0% |
| TCCCTTCTTCCATATCAAAA+TGG | + | chr7_3:75499949-75499968 | None:intergenic | 35.0% | |
| AAGAAGGGAACACAAAGAAA+GGG | - | chr7_3:75499960-75499979 | Msa1124310:intron | 35.0% | |
| ! | TAGTAAGAATGGTTGGTTAC+GGG | + | chr7_3:75500097-75500116 | None:intergenic | 35.0% |
| ! | GTAGTAAGAATGGTTGGTTA+CGG | + | chr7_3:75500098-75500117 | None:intergenic | 35.0% |
| CGTGTTTGAAAATTGTTTGC+AGG | - | chr7_3:75500167-75500186 | Msa1124310:five_prime_UTR | 35.0% | |
| TTGCAGGCTGTTATCAATTA+TGG | - | chr7_3:75500183-75500202 | Msa1124310:five_prime_UTR | 35.0% | |
| GAAGAAGGGAACACAAAGAA+AGG | - | chr7_3:75499959-75499978 | Msa1124310:intron | 40.0% | |
| AACACAAAGAAAGGGTTGGA+AGG | - | chr7_3:75499968-75499987 | Msa1124310:intron | 40.0% | |
| AAGTTAGAGTGACGGTTGAT+GGG | + | chr7_3:75500010-75500029 | None:intergenic | 40.0% | |
| !! | CGGATTTCAAGTTAGAGTGA+CGG | + | chr7_3:75500018-75500037 | None:intergenic | 40.0% |
| TTGTGTGAAATCATCATCGG+AGG | + | chr7_3:75500044-75500063 | None:intergenic | 40.0% | |
| AGGGAACACAAAGAAAGGGT+TGG | - | chr7_3:75499964-75499983 | Msa1124310:intron | 45.0% | |
| AAGAAAGGGTTGGAAGGAAG+TGG | - | chr7_3:75499974-75499993 | Msa1124310:intron | 45.0% | |
| CAAGTTAGAGTGACGGTTGA+TGG | + | chr7_3:75500011-75500030 | None:intergenic | 45.0% | |
| GAAATCATCATCGGAGGAAG+CGG | + | chr7_3:75500038-75500057 | None:intergenic | 45.0% | |
| !! | ATGGTTGGTTACGGGAGTTT+TGG | + | chr7_3:75500089-75500108 | None:intergenic | 45.0% |
| !! | GTTGGTTACGGGAGTTTTGG+AGG | + | chr7_3:75500086-75500105 | None:intergenic | 50.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7_3 | gene | 75499888 | 75500212 | 75499888 | ID=Msa1124310;Name=Msa1124310 |
| chr7_3 | mRNA | 75499888 | 75500212 | 75499888 | ID=Msa1124310-mRNA-1;Parent=Msa1124310;Name=Msa1124310-mRNA-1;_AED=0.00;_eAED=0.00;_QI=68|1|0.5|1|1|0.5|2|0|55 |
| chr7_3 | exon | 75499888 | 75499911 | 75499888 | ID=Msa1124310-mRNA-1:exon:20350;Parent=Msa1124310-mRNA-1 |
| chr7_3 | exon | 75500004 | 75500212 | 75500004 | ID=Msa1124310-mRNA-1:exon:20349;Parent=Msa1124310-mRNA-1 |
| chr7_3 | five_prime_UTR | 75500145 | 75500212 | 75500145 | ID=Msa1124310-mRNA-1:five_prime_utr;Parent=Msa1124310-mRNA-1 |
| chr7_3 | CDS | 75500004 | 75500144 | 75500004 | ID=Msa1124310-mRNA-1:cds;Parent=Msa1124310-mRNA-1 |
| chr7_3 | CDS | 75499888 | 75499911 | 75499888 | ID=Msa1124310-mRNA-1:cds;Parent=Msa1124310-mRNA-1 |
| Gene Sequence |
| Protein sequence |
