AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0436260


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0436260 MtrunA17_Chr3g0143581 98.204 167 3 0 1 167 1 167 7.33e-121 345
Msa0436260 MtrunA17_Chr3g0143571 94.375 160 9 0 172 331 15 174 9.90e-103 299
Msa0436260 MtrunA17_Chr1g0213311 45.872 327 137 8 20 321 24 335 2.28e-90 276
Msa0436260 MtrunA17_Chr3g0079841 38.158 304 114 7 20 317 29 264 7.97e-52 172
Msa0436260 MtrunA17_Chr7g0214501 38.554 249 109 5 83 329 3 209 4.26e-49 166
Msa0436260 MtrunA17_Chr7g0214491 60.656 61 24 0 20 80 25 85 2.40e-19 82.0
Msa0436260 MtrunA17_Chr5g0445971 32.407 108 62 2 17 124 24 120 5.87e-11 60.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0436260 AT1G76110.1 63.636 308 104 5 18 322 25 327 1.80e-131 378
Msa0436260 AT1G04880.1 41.718 326 151 7 23 321 21 334 1.84e-78 247
Msa0436260 AT3G13350.1 40.476 294 152 4 25 317 34 305 9.68e-65 207
Msa0436260 AT1G55650.1 36.213 301 142 8 27 321 30 286 6.80e-54 180

Find 118 sgRNAs with CRISPR-Local

Find 174 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ACTAGTTAGTTACATGAATT+TGG 0.209705 3_2:+89693408 None:intergenic
CCAGGACTGACCAATCATTT+TGG 0.213880 3_2:+89691983 None:intergenic
AGACGATGATTCACGTCTTT+TGG 0.235818 3_2:-89692312 Msa0436260:CDS
GCACTATAATTTACCATCTT+AGG 0.243959 3_2:+89692825 None:intergenic
TTAACGACCCTACTCTCTTT+TGG 0.246597 3_2:-89693465 Msa0436260:CDS
GCTTAGAATTCTATTATAAT+TGG 0.250974 3_2:-89691646 Msa0436260:three_prime_UTR
TCCACTGGTCTGAGGTTTAC+AGG 0.256822 3_2:-89691587 Msa0436260:three_prime_UTR
TTATATAGTGTCAGTGAAAT+TGG 0.257424 3_2:-89692255 Msa0436260:CDS
GTAAACTCCCTTTCTCTGTT+TGG 0.269610 3_2:+89692005 None:intergenic
AAGTTATAGCCACTCCTATT+TGG 0.286925 3_2:+89692068 None:intergenic
TTCAGAGCTGAGACTATTCC+AGG 0.293074 3_2:+89691965 None:intergenic
GTAAAAGTACAAAGCAATTA+AGG 0.293418 3_2:+89693789 None:intergenic
AGTTCACTTCTTCAAAGTTC+AGG 0.296129 3_2:-89693030 Msa0436260:CDS
TAAACTCCCTTTCTCTGTTT+GGG 0.301975 3_2:+89692006 None:intergenic
CCAACTATCCAAAGCCAAAT+AGG 0.317522 3_2:-89692082 Msa0436260:CDS
TGCCAAAAGGGATAGATTTA+TGG 0.320764 3_2:+89691680 None:intergenic
TATTGAACAATAGCTAATTC+AGG 0.323525 3_2:+89692852 None:intergenic
TTTCATGTGGCAGATCCTTT+TGG 0.326269 3_2:-89691518 Msa0436260:three_prime_UTR
GTCCATAAATCTATCCCTTT+TGG 0.330743 3_2:-89691682 Msa0436260:exon
CTATTTGGCTTTGGATAGTT+GGG 0.336021 3_2:+89692083 None:intergenic
CCTATTTGGCTTTGGATAGT+TGG 0.350904 3_2:+89692082 None:intergenic
TTACCAAAACATTGGCTTAA+GGG 0.366684 3_2:-89691780 Msa0436260:CDS
TTTACCAAAACATTGGCTTA+AGG 0.369159 3_2:-89691781 Msa0436260:CDS
TAGCCACTCCTATTTGGCTT+TGG 0.371071 3_2:+89692074 None:intergenic
TTGGGAAAAGGAACAATAGA+AGG 0.380812 3_2:-89692293 Msa0436260:CDS
TAGCGTCTCTTTGCTTAAAC+AGG 0.381504 3_2:-89691456 Msa0436260:three_prime_UTR
AGCGGTTTCTCCTTCATCAT+TGG 0.385924 3_2:-89692192 Msa0436260:CDS
AGGTTGTTGCAGAGAAGAAA+TGG 0.399101 3_2:-89693151 Msa0436260:CDS
GCATATATTGTTGTGGATAA+TGG 0.400222 3_2:-89691610 Msa0436260:three_prime_UTR
TCCTACCCAAGCGATGAGTT+TGG 0.411390 3_2:+89692132 None:intergenic
TGGTGCAAATTCCTAAGTTA+AGG 0.421658 3_2:+89693927 None:intergenic
GAGAAGAAATGGAGAGAAGT+AGG 0.422027 3_2:-89693140 Msa0436260:CDS
TGTCCCTTAAGCCAATGTTT+TGG 0.427681 3_2:+89691777 None:intergenic
TGTTCAATATTCACCTAAGA+TGG 0.427917 3_2:-89692838 Msa0436260:CDS
AGGGAGTTTACCAAAATGAT+TGG 0.428453 3_2:-89691993 Msa0436260:CDS
CTCTTCTTCTGCTGCCAAAA+GGG 0.435265 3_2:+89691668 None:intergenic
AACTCTACCCAAACAGAGAA+AGG 0.437948 3_2:-89692013 Msa0436260:CDS
TATATAGTGTCAGTGAAATT+GGG 0.442454 3_2:-89692254 Msa0436260:CDS
CCAAAATGATTGGTCAGTCC+TGG 0.444792 3_2:-89691983 Msa0436260:CDS
TTGCATAGGATTCCTGTGAT+TGG 0.455163 3_2:-89693309 Msa0436260:intron
GTTCACTTCTTCAAAGTTCA+GGG 0.455272 3_2:-89693029 Msa0436260:CDS
CAATCACCAAACTCATCGCT+TGG 0.458935 3_2:-89692138 Msa0436260:CDS
TGGGTTCAGAAGTTCTCAAA+GGG 0.460026 3_2:-89692235 Msa0436260:CDS
TGGATGGGATGGCTTCACTA+TGG 0.463016 3_2:+89693907 None:intergenic
GCTCTTCTTCTGCTGCCAAA+AGG 0.465124 3_2:+89691667 None:intergenic
TCGTCGCTTTCACTTTCTCA+TGG 0.469995 3_2:-89693434 Msa0436260:CDS
TTTGCCTTCGTCGTCGTCGC+CGG 0.479624 3_2:+89693525 None:intergenic
AGAGCAGAGTTGTGGATGGA+TGG 0.490160 3_2:+89693891 None:intergenic
TCTCAGCTCTGAAGAAAGAA+TGG 0.490573 3_2:-89691955 Msa0436260:intron
AAGGTACAAAAGAGAGTTGA+CGG 0.495764 3_2:-89691750 Msa0436260:CDS
CGATGAGTTTGGTGATTGAA+TGG 0.504304 3_2:+89692143 None:intergenic
GATTCCTGTGATTGGTGGTA+AGG 0.506284 3_2:-89693301 Msa0436260:CDS
TTGCAGATTTACCAAAACAT+TGG 0.511934 3_2:-89691788 Msa0436260:intron
ATAGAAGGAAAATTTGATTG+TGG 0.518312 3_2:-89692278 Msa0436260:CDS
CCACTGGTCTGAGGTTTACA+GGG 0.518711 3_2:-89691586 Msa0436260:three_prime_UTR
AAACTCATCGCTTGGGTAGG+AGG 0.523054 3_2:-89692130 Msa0436260:CDS
TTCTCTACGTGGAAGTTACA+AGG 0.523185 3_2:-89693263 Msa0436260:CDS
TTGGCTTAAGGGACAAAGAA+AGG 0.525876 3_2:-89691769 Msa0436260:CDS
AGAGTGTCCCAAAAGAGAGT+AGG 0.527303 3_2:+89693457 None:intergenic
CAAGTGGGTACATACTAGAT+TGG 0.527598 3_2:+89691486 None:intergenic
ATTTGCCGCGTGGGAGGGAA+CGG 0.528414 3_2:+89693859 None:intergenic
GAGTGTCCCAAAAGAGAGTA+GGG 0.533581 3_2:+89693458 None:intergenic
AAGTACAAAGCAATTAAGGA+TGG 0.535270 3_2:+89693793 None:intergenic
TTTACATGCATATATTGTTG+TGG 0.536455 3_2:-89691617 Msa0436260:three_prime_UTR
AATCACCAAACTCATCGCTT+GGG 0.544065 3_2:-89692137 Msa0436260:CDS
GATTGGTTAAACAAACCAAA+AGG 0.548153 3_2:+89691503 None:intergenic
CATAGGATTCCTGTGATTGG+TGG 0.550359 3_2:-89693306 Msa0436260:intron
AGTGCTGAATCTCATGATGA+AGG 0.550456 3_2:-89692807 Msa0436260:intron
GTCGTTGTGAGAGGCGAGTG+GGG 0.551529 3_2:+89693492 None:intergenic
CGAAATAGTAATACCTGGTG+AGG 0.553336 3_2:+89692992 None:intergenic
TTGGTGATTGAATGGCTCAA+TGG 0.554617 3_2:+89692151 None:intergenic
AAAAGAAGCGCTTGTAGTGG+TGG 0.559395 3_2:+89693097 None:intergenic
AGATGATTTGCCGCGTGGGA+GGG 0.563653 3_2:+89693854 None:intergenic
CAATCTAGTATGTACCCACT+TGG 0.563932 3_2:-89691485 Msa0436260:three_prime_UTR
AAGATGATTTGCCGCGTGGG+AGG 0.565052 3_2:+89693853 None:intergenic
CGTCGTTGTGAGAGGCGAGT+GGG 0.567003 3_2:+89693491 None:intergenic
GAAATAGTAATACCTGGTGA+GGG 0.568622 3_2:+89692993 None:intergenic
ACTCTACCCAAACAGAGAAA+GGG 0.569820 3_2:-89692012 Msa0436260:CDS
TGTTGTGGATAATGGTCCAC+TGG 0.570827 3_2:-89691602 Msa0436260:three_prime_UTR
TACACAGCAGAGCAGAGTTG+TGG 0.575097 3_2:+89693883 None:intergenic
TTAATGTGTGTTTGATTGTG+AGG 0.580951 3_2:-89691368 Msa0436260:three_prime_UTR
ATGTGGCATTTAGTTTCATG+TGG 0.582340 3_2:-89691531 Msa0436260:three_prime_UTR
TTGGGTTCAGAAGTTCTCAA+AGG 0.586901 3_2:-89692236 Msa0436260:CDS
GGAGTACAAACAGAAAATGA+AGG 0.592924 3_2:-89691729 Msa0436260:CDS
AGTACAAAGCAATTAAGGAT+GGG 0.596058 3_2:+89693794 None:intergenic
GCTAATTCAGGTTTCCACGA+TGG 0.602804 3_2:+89692864 None:intergenic
AAGGAGAAGCGGTTATGAGA+AGG 0.604277 3_2:-89693244 Msa0436260:intron
AGCTCCTTACCACCAATCAC+AGG 0.612482 3_2:+89693297 None:intergenic
CAGCAGAGCAGAGTTGTGGA+TGG 0.612672 3_2:+89693887 None:intergenic
GTTAACGACGTCGTTGTGAG+AGG 0.614603 3_2:+89693483 None:intergenic
AAGAAGATGATTTGCCGCGT+GGG 0.614673 3_2:+89693850 None:intergenic
CCCTGTAAACCTCAGACCAG+TGG 0.615472 3_2:+89691586 None:intergenic
TCGTTGTGAGAGGCGAGTGG+GGG 0.615838 3_2:+89693493 None:intergenic
GAGCAGAGTTGTGGATGGAT+GGG 0.618143 3_2:+89693892 None:intergenic
ACGTCGTTGTGAGAGGCGAG+TGG 0.618608 3_2:+89693490 None:intergenic
GAGACGCTATGTGGACCAAG+TGG 0.619146 3_2:+89691470 None:intergenic
AGAGTTGTGGATGGATGGGA+TGG 0.623660 3_2:+89693896 None:intergenic
TTGTGCAGACAGAAGAACTC+GGG 0.623939 3_2:-89691706 Msa0436260:CDS
TACAAAAGAAGCGCTTGTAG+TGG 0.625201 3_2:+89693094 None:intergenic
TGTTGTGTAACCAATGATGA+AGG 0.625666 3_2:+89692182 None:intergenic
GATAATGGTCCACTGGTCTG+AGG 0.629424 3_2:-89691595 Msa0436260:three_prime_UTR
ATAAAAGATATAGTTTCATG+TGG 0.634865 3_2:-89691548 Msa0436260:three_prime_UTR
AACTCCGGCGACGACGACGA+AGG 0.636321 3_2:-89693529 Msa0436260:CDS
TTAAGCAAAGAGACGCTATG+TGG 0.643680 3_2:+89691461 None:intergenic
TATCCAAAGCCAAATAGGAG+TGG 0.645627 3_2:-89692077 Msa0436260:CDS
AAAGAAGATGATTTGCCGCG+TGG 0.646388 3_2:+89693849 None:intergenic
TGATTTGCACGTTCTCTACG+TGG 0.652993 3_2:-89693274 Msa0436260:CDS
AAATAGTAATACCTGGTGAG+GGG 0.654247 3_2:+89692994 None:intergenic
GCGGTGAGAAGCAAGAACTC+CGG 0.655187 3_2:-89693544 Msa0436260:CDS
ACCAAACTCATCGCTTGGGT+AGG 0.660160 3_2:-89692133 Msa0436260:CDS
GTGGAAGTTACAAGGAGAAG+CGG 0.661449 3_2:-89693255 Msa0436260:CDS
AATAGTAATACCTGGTGAGG+GGG 0.665808 3_2:+89692995 None:intergenic
GTTGTGCAGACAGAAGAACT+CGG 0.678933 3_2:-89691707 Msa0436260:CDS
AGACGCTATGTGGACCAAGT+GGG 0.696910 3_2:+89691471 None:intergenic
TTTCTGGTAACAGTCCATCG+TGG 0.712333 3_2:-89692878 Msa0436260:CDS
GGGTTCAGAAGTTCTCAAAG+GGG 0.716935 3_2:-89692234 Msa0436260:CDS
TCATTGGTTACACAACACAA+CGG 0.736779 3_2:-89692176 Msa0436260:CDS
TGTAACCGTTCCCTCCCACG+CGG 0.737322 3_2:-89693864 Msa0436260:five_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TAAATAGAATAGTAAAAAAA+AGG + chr3_2:89691568-89691587 None:intergenic 10.0%
!! TATTTAATAATTCAAATTTC+AGG - chr3_2:89692105-89692124 Msa0436260:CDS 10.0%
!! TTATAAAAATTCATTTAGTT+CGG + chr3_2:89693887-89693906 None:intergenic 10.0%
!! TTGAAAAAATAAATGAAGAA+AGG + chr3_2:89691901-89691920 None:intergenic 15.0%
!! AAATGAAATCACATTTATAA+TGG + chr3_2:89691948-89691967 None:intergenic 15.0%
!! CAAAAAATAGTATAAATGAA+GGG + chr3_2:89692068-89692087 None:intergenic 15.0%
!! ACAAAAAATAGTATAAATGA+AGG + chr3_2:89692069-89692088 None:intergenic 15.0%
!!! ATGAAACTATATCTTTTATA+AGG + chr3_2:89693727-89693746 None:intergenic 15.0%
!!! TATAAAAATTCATTTAGTTC+GGG + chr3_2:89693886-89693905 None:intergenic 15.0%
!! GAGAAAATGAAAATGAAATT+AGG + chr3_2:89691521-89691540 None:intergenic 20.0%
!! ACTATTAAAAATGTCATCAT+CGG - chr3_2:89691710-89691729 Msa0436260:CDS 20.0%
!! TAATGGTTATTTATCAAGTT+AGG - chr3_2:89692497-89692516 Msa0436260:intron 20.0%
!! AGATATTGAAATTACAGAAT+TGG - chr3_2:89692554-89692573 Msa0436260:intron 20.0%
!! AGAAAGAATGGTAATTAAAA+AGG - chr3_2:89693333-89693352 Msa0436260:intron 20.0%
!! GCTTAGAATTCTATTATAAT+TGG - chr3_2:89693630-89693649 Msa0436260:intron 20.0%
!! ATAAAAGATATAGTTTCATG+TGG - chr3_2:89693728-89693747 Msa0436260:intron 20.0%
!! GTAAAAGTACAAAGCAATTA+AGG + chr3_2:89691490-89691509 None:intergenic 25.0%
!! TTTTCATTTTCTCTCATCTT+AGG - chr3_2:89691528-89691547 Msa0436260:three_prime_UTR 25.0%
! AGCAGAATAAAAGATAGAAA+AGG + chr3_2:89691615-89691634 None:intergenic 25.0%
!!! AATAAATTTTCAAGCAGTTC+CGG - chr3_2:89691679-89691698 Msa0436260:exon 25.0%
! ACTAGTTAGTTACATGAATT+TGG + chr3_2:89691871-89691890 None:intergenic 25.0%
!!! TTATAATGGTACTTTTGGTT+TGG + chr3_2:89691934-89691953 None:intergenic 25.0%
!! CACATTTATAATGGTACTTT+TGG + chr3_2:89691939-89691958 None:intergenic 25.0%
!! AATGTGATTTCATTTTGCAT+AGG - chr3_2:89691953-89691972 Msa0436260:intron 25.0%
! TATTGAACAATAGCTAATTC+AGG + chr3_2:89692427-89692446 None:intergenic 25.0%
! TCATGATGAAGGTAATTTAA+TGG - chr3_2:89692480-89692499 Msa0436260:intron 25.0%
! GAAAGTAGTTTATGATGTTA+AGG - chr3_2:89692748-89692767 Msa0436260:intron 25.0%
!!! TCTGCATATTTAATTTGTCA+TGG - chr3_2:89692891-89692910 Msa0436260:intron 25.0%
! ATAGAAGGAAAATTTGATTG+TGG - chr3_2:89692998-89693017 Msa0436260:intron 25.0%
! TTATATAGTGTCAGTGAAAT+TGG - chr3_2:89693021-89693040 Msa0436260:CDS 25.0%
! TATATAGTGTCAGTGAAATT+GGG - chr3_2:89693022-89693041 Msa0436260:CDS 25.0%
!!! ATTGTTGTTTATCTAGAATC+TGG - chr3_2:89693399-89693418 Msa0436260:intron 25.0%
! TTGGTAAATCTGCAATATTA+GGG + chr3_2:89693483-89693502 None:intergenic 25.0%
! TTTGGTAAATCTGCAATATT+AGG + chr3_2:89693484-89693503 None:intergenic 25.0%
! TTTACATGCATATATTGTTG+TGG - chr3_2:89693659-89693678 Msa0436260:intron 25.0%
AGTACAAAGCAATTAAGGAT+GGG + chr3_2:89691485-89691504 None:intergenic 30.0%
AAGTACAAAGCAATTAAGGA+TGG + chr3_2:89691486-89691505 None:intergenic 30.0%
ATTAAAAATGTCATCATCGG+CGG - chr3_2:89691713-89691732 Msa0436260:CDS 30.0%
AATAGCGAAATAGTAATACC+TGG + chr3_2:89692292-89692311 None:intergenic 30.0%
! TATATTGCAGATGCATTTTC+TGG - chr3_2:89692382-89692401 Msa0436260:intron 30.0%
TGTTCAATATTCACCTAAGA+TGG - chr3_2:89692438-89692457 Msa0436260:intron 30.0%
GCACTATAATTTACCATCTT+AGG + chr3_2:89692454-89692473 None:intergenic 30.0%
GAAATTACAGAATTGGAATC+AGG - chr3_2:89692561-89692580 Msa0436260:intron 30.0%
ACTCATTTGTGATTCTACTA+AGG - chr3_2:89692678-89692697 Msa0436260:intron 30.0%
GAAGAGAAGAAAAAGAAAGT+GGG - chr3_2:89693168-89693187 Msa0436260:intron 30.0%
!!! GTGTGTTGTTTTATCCTAAT+TGG - chr3_2:89693369-89693388 Msa0436260:intron 30.0%
CAACAATGTAAAGACCAATT+AGG + chr3_2:89693386-89693405 None:intergenic 30.0%
! TTATCTAGAATCTGGTTATC+AGG - chr3_2:89693407-89693426 Msa0436260:intron 30.0%
! TATCTAGAATCTGGTTATCA+GGG - chr3_2:89693408-89693427 Msa0436260:intron 30.0%
TTGCAGATTTACCAAAACAT+TGG - chr3_2:89693488-89693507 Msa0436260:CDS 30.0%
!! TTTACCAAAACATTGGCTTA+AGG - chr3_2:89693495-89693514 Msa0436260:CDS 30.0%
!! TTACCAAAACATTGGCTTAA+GGG - chr3_2:89693496-89693515 Msa0436260:CDS 30.0%
GCATATATTGTTGTGGATAA+TGG - chr3_2:89693666-89693685 Msa0436260:intron 30.0%
! GATTGGTTAAACAAACCAAA+AGG + chr3_2:89693776-89693795 None:intergenic 30.0%
TTAATGTGTGTTTGATTGTG+AGG - chr3_2:89693908-89693927 Msa0436260:five_prime_UTR 30.0%
! CATTTTCTCTCATCTTAGGA+AGG - chr3_2:89691532-89691551 Msa0436260:three_prime_UTR 35.0%
AGGTAGTACTAGTAAATGAG+AGG + chr3_2:89691595-89691614 None:intergenic 35.0%
!! GCTATTTTCTCAAACCACAA+CGG - chr3_2:89691632-89691651 Msa0436260:three_prime_UTR 35.0%
!! GAAGAATGTTTTTACCGTTG+TGG + chr3_2:89691649-89691668 None:intergenic 35.0%
! TTTTTAATAGTTCACGTCGC+CGG + chr3_2:89691701-89691720 None:intergenic 35.0%
AGTTCACTTCTTCAAAGTTC+AGG - chr3_2:89692246-89692265 Msa0436260:CDS 35.0%
GTTCACTTCTTCAAAGTTCA+GGG - chr3_2:89692247-89692266 Msa0436260:CDS 35.0%
AAATAGTAATACCTGGTGAG+GGG + chr3_2:89692285-89692304 None:intergenic 35.0%
GAAATAGTAATACCTGGTGA+GGG + chr3_2:89692286-89692305 None:intergenic 35.0%
! TAGAAGTAGAAGCATGATTG+TGG - chr3_2:89692808-89692827 Msa0436260:CDS 35.0%
TTGGGAAAAGGAACAATAGA+AGG - chr3_2:89692983-89693002 Msa0436260:intron 35.0%
TGTTGTGTAACCAATGATGA+AGG + chr3_2:89693097-89693116 None:intergenic 35.0%
! TCATTGGTTACACAACACAA+CGG - chr3_2:89693100-89693119 Msa0436260:CDS 35.0%
GGAAGAGAAGAAAAAGAAAG+TGG - chr3_2:89693167-89693186 Msa0436260:intron 35.0%
!! CTATTTGGCTTTGGATAGTT+GGG + chr3_2:89693196-89693215 None:intergenic 35.0%
AAGTTATAGCCACTCCTATT+TGG + chr3_2:89693211-89693230 None:intergenic 35.0%
TAAACTCCCTTTCTCTGTTT+GGG + chr3_2:89693273-89693292 None:intergenic 35.0%
AGGGAGTTTACCAAAATGAT+TGG - chr3_2:89693283-89693302 Msa0436260:CDS 35.0%
AAGGTACAAAAGAGAGTTGA+CGG - chr3_2:89693526-89693545 Msa0436260:CDS 35.0%
GGAGTACAAACAGAAAATGA+AGG - chr3_2:89693547-89693566 Msa0436260:CDS 35.0%
! GTCCATAAATCTATCCCTTT+TGG - chr3_2:89693594-89693613 Msa0436260:intron 35.0%
TGCCAAAAGGGATAGATTTA+TGG + chr3_2:89693599-89693618 None:intergenic 35.0%
! ATGTGGCATTTAGTTTCATG+TGG - chr3_2:89693745-89693764 Msa0436260:intron 35.0%
! TTAACGACCCTACTCTCTTT+TGG - chr3_2:89691811-89691830 Msa0436260:intron 40.0%
! TAACGACCCTACTCTCTTTT+GGG - chr3_2:89691812-89691831 Msa0436260:intron 40.0%
TTGCATAGGATTCCTGTGAT+TGG - chr3_2:89691967-89691986 Msa0436260:CDS 40.0%
TTCTCTACGTGGAAGTTACA+AGG - chr3_2:89692013-89692032 Msa0436260:CDS 40.0%
AGGTTGTTGCAGAGAAGAAA+TGG - chr3_2:89692125-89692144 Msa0436260:CDS 40.0%
GAGAAGAAATGGAGAGAAGT+AGG - chr3_2:89692136-89692155 Msa0436260:CDS 40.0%
!! TACAAAAGAAGCGCTTGTAG+TGG + chr3_2:89692185-89692204 None:intergenic 40.0%
AATAGTAATACCTGGTGAGG+GGG + chr3_2:89692284-89692303 None:intergenic 40.0%
CGAAATAGTAATACCTGGTG+AGG + chr3_2:89692287-89692306 None:intergenic 40.0%
! AGTGCTGAATCTCATGATGA+AGG - chr3_2:89692469-89692488 Msa0436260:intron 40.0%
! ATGATTGTGGACTCAAGTTG+AGG - chr3_2:89692821-89692840 Msa0436260:CDS 40.0%
!! TGGACTCAAGTTGAGGATTT+AGG - chr3_2:89692828-89692847 Msa0436260:CDS 40.0%
! AGACGATGATTCACGTCTTT+TGG - chr3_2:89692964-89692983 Msa0436260:intron 40.0%
! GACGATGATTCACGTCTTTT+GGG - chr3_2:89692965-89692984 Msa0436260:intron 40.0%
!! GATTCACGTCTTTTGGGAAA+AGG - chr3_2:89692971-89692990 Msa0436260:intron 40.0%
TTGGGTTCAGAAGTTCTCAA+AGG - chr3_2:89693040-89693059 Msa0436260:CDS 40.0%
TGGGTTCAGAAGTTCTCAAA+GGG - chr3_2:89693041-89693060 Msa0436260:CDS 40.0%
GCTTTACCATCCAGAAAAAG+CGG - chr3_2:89693066-89693085 Msa0436260:CDS 40.0%
! TTGGTGATTGAATGGCTCAA+TGG + chr3_2:89693128-89693147 None:intergenic 40.0%
! CGATGAGTTTGGTGATTGAA+TGG + chr3_2:89693136-89693155 None:intergenic 40.0%
AATCACCAAACTCATCGCTT+GGG - chr3_2:89693139-89693158 Msa0436260:CDS 40.0%
!! CCTATTTGGCTTTGGATAGT+TGG + chr3_2:89693197-89693216 None:intergenic 40.0%
CCAACTATCCAAAGCCAAAT+AGG - chr3_2:89693194-89693213 Msa0436260:intron 40.0%
TATCCAAAGCCAAATAGGAG+TGG - chr3_2:89693199-89693218 Msa0436260:intron 40.0%
AACTCTACCCAAACAGAGAA+AGG - chr3_2:89693263-89693282 Msa0436260:CDS 40.0%
ACTCTACCCAAACAGAGAAA+GGG - chr3_2:89693264-89693283 Msa0436260:CDS 40.0%
GTAAACTCCCTTTCTCTGTT+TGG + chr3_2:89693274-89693293 None:intergenic 40.0%
!! TCTCAGCTCTGAAGAAAGAA+TGG - chr3_2:89693321-89693340 Msa0436260:intron 40.0%
! TGTCCCTTAAGCCAATGTTT+TGG + chr3_2:89693502-89693521 None:intergenic 40.0%
TTGGCTTAAGGGACAAAGAA+AGG - chr3_2:89693507-89693526 Msa0436260:CDS 40.0%
! TTTCATGTGGCAGATCCTTT+TGG - chr3_2:89693758-89693777 Msa0436260:intron 40.0%
CAAGTGGGTACATACTAGAT+TGG + chr3_2:89693793-89693812 None:intergenic 40.0%
CAATCTAGTATGTACCCACT+TGG - chr3_2:89693791-89693810 Msa0436260:intron 40.0%
TTAAGCAAAGAGACGCTATG+TGG + chr3_2:89693818-89693837 None:intergenic 40.0%
TAGCGTCTCTTTGCTTAAAC+AGG - chr3_2:89693820-89693839 Msa0436260:five_prime_UTR 40.0%
! AAGAAGATGATTTGCCGCGT+GGG + chr3_2:89691429-89691448 None:intergenic 45.0%
! AAAGAAGATGATTTGCCGCG+TGG + chr3_2:89691430-89691449 None:intergenic 45.0%
GAGTGTCCCAAAAGAGAGTA+GGG + chr3_2:89691821-89691840 None:intergenic 45.0%
! AGAGTGTCCCAAAAGAGAGT+AGG + chr3_2:89691822-89691841 None:intergenic 45.0%
! TCGTCGCTTTCACTTTCTCA+TGG - chr3_2:89691842-89691861 Msa0436260:intron 45.0%
CATAGGATTCCTGTGATTGG+TGG - chr3_2:89691970-89691989 Msa0436260:CDS 45.0%
! GATTCCTGTGATTGGTGGTA+AGG - chr3_2:89691975-89691994 Msa0436260:CDS 45.0%
! TGATTTGCACGTTCTCTACG+TGG - chr3_2:89692002-89692021 Msa0436260:CDS 45.0%
GTGGAAGTTACAAGGAGAAG+CGG - chr3_2:89692021-89692040 Msa0436260:CDS 45.0%
AAGGAGAAGCGGTTATGAGA+AGG - chr3_2:89692032-89692051 Msa0436260:CDS 45.0%
!! AAAAGAAGCGCTTGTAGTGG+TGG + chr3_2:89692182-89692201 None:intergenic 45.0%
! TTTCTGGTAACAGTCCATCG+TGG - chr3_2:89692398-89692417 Msa0436260:intron 45.0%
! GCTAATTCAGGTTTCCACGA+TGG + chr3_2:89692415-89692434 None:intergenic 45.0%
GGGTTCAGAAGTTCTCAAAG+GGG - chr3_2:89693042-89693061 Msa0436260:CDS 45.0%
!!! GAGAAACCGCTTTTTCTGGA+TGG + chr3_2:89693075-89693094 None:intergenic 45.0%
!!! GAAGGAGAAACCGCTTTTTC+TGG + chr3_2:89693079-89693098 None:intergenic 45.0%
AGCGGTTTCTCCTTCATCAT+TGG - chr3_2:89693084-89693103 Msa0436260:CDS 45.0%
CAATCACCAAACTCATCGCT+TGG - chr3_2:89693138-89693157 Msa0436260:CDS 45.0%
! TAGCCACTCCTATTTGGCTT+TGG + chr3_2:89693205-89693224 None:intergenic 45.0%
! CCAGGACTGACCAATCATTT+TGG + chr3_2:89693296-89693315 None:intergenic 45.0%
! CCAAAATGATTGGTCAGTCC+TGG - chr3_2:89693293-89693312 Msa0436260:CDS 45.0%
TTCAGAGCTGAGACTATTCC+AGG + chr3_2:89693314-89693333 None:intergenic 45.0%
GTTGTGCAGACAGAAGAACT+CGG - chr3_2:89693569-89693588 Msa0436260:exon 45.0%
TTGTGCAGACAGAAGAACTC+GGG - chr3_2:89693570-89693589 Msa0436260:exon 45.0%
CTCTTCTTCTGCTGCCAAAA+GGG + chr3_2:89693611-89693630 None:intergenic 45.0%
! TGTTGTGGATAATGGTCCAC+TGG - chr3_2:89693674-89693693 Msa0436260:intron 45.0%
!! AAATAATTGAATTTAAATTA+AGG - chr3_2:89692525-89692544 Msa0436260:intron 5.0%
!! AATAATTGAATTTAAATTAA+GGG - chr3_2:89692526-89692545 Msa0436260:intron 5.0%
TGGATGGGATGGCTTCACTA+TGG + chr3_2:89691372-89691391 None:intergenic 50.0%
AGAGTTGTGGATGGATGGGA+TGG + chr3_2:89691383-89691402 None:intergenic 50.0%
GAGCAGAGTTGTGGATGGAT+GGG + chr3_2:89691387-89691406 None:intergenic 50.0%
AGAGCAGAGTTGTGGATGGA+TGG + chr3_2:89691388-89691407 None:intergenic 50.0%
TACACAGCAGAGCAGAGTTG+TGG + chr3_2:89691396-89691415 None:intergenic 50.0%
GTTAACGACGTCGTTGTGAG+AGG + chr3_2:89691796-89691815 None:intergenic 50.0%
AGCTCCTTACCACCAATCAC+AGG + chr3_2:89691982-89692001 None:intergenic 50.0%
ACCAAACTCATCGCTTGGGT+AGG - chr3_2:89693143-89693162 Msa0436260:CDS 50.0%
TCCTACCCAAGCGATGAGTT+TGG + chr3_2:89693147-89693166 None:intergenic 50.0%
AAACTCATCGCTTGGGTAGG+AGG - chr3_2:89693146-89693165 Msa0436260:CDS 50.0%
GCTCTTCTTCTGCTGCCAAA+AGG + chr3_2:89693612-89693631 None:intergenic 50.0%
! GATAATGGTCCACTGGTCTG+AGG - chr3_2:89693681-89693700 Msa0436260:intron 50.0%
! TCCACTGGTCTGAGGTTTAC+AGG - chr3_2:89693689-89693708 Msa0436260:intron 50.0%
! CCACTGGTCTGAGGTTTACA+GGG - chr3_2:89693690-89693709 Msa0436260:intron 50.0%
AGACGCTATGTGGACCAAGT+GGG + chr3_2:89693808-89693827 None:intergenic 50.0%
CAGCAGAGCAGAGTTGTGGA+TGG + chr3_2:89691392-89691411 None:intergenic 55.0%
! AGATGATTTGCCGCGTGGGA+GGG + chr3_2:89691425-89691444 None:intergenic 55.0%
! AAGATGATTTGCCGCGTGGG+AGG + chr3_2:89691426-89691445 None:intergenic 55.0%
GCGGTGAGAAGCAAGAACTC+CGG - chr3_2:89691732-89691751 Msa0436260:CDS 55.0%
! CCTGGTGAGGGGGTGTAAAT+AGG + chr3_2:89692274-89692293 None:intergenic 55.0%
CCTATTTACACCCCCTCACC+AGG - chr3_2:89692271-89692290 Msa0436260:CDS 55.0%
CCCTGTAAACCTCAGACCAG+TGG + chr3_2:89693693-89693712 None:intergenic 55.0%
GAGACGCTATGTGGACCAAG+TGG + chr3_2:89693809-89693828 None:intergenic 55.0%
TGTAACCGTTCCCTCCCACG+CGG - chr3_2:89691412-89691431 Msa0436260:three_prime_UTR 60.0%
ATTTGCCGCGTGGGAGGGAA+CGG + chr3_2:89691420-89691439 None:intergenic 60.0%
TTTGCCTTCGTCGTCGTCGC+CGG + chr3_2:89691754-89691773 None:intergenic 60.0%
TCGTTGTGAGAGGCGAGTGG+GGG + chr3_2:89691786-89691805 None:intergenic 60.0%
GTCGTTGTGAGAGGCGAGTG+GGG + chr3_2:89691787-89691806 None:intergenic 60.0%
CGTCGTTGTGAGAGGCGAGT+GGG + chr3_2:89691788-89691807 None:intergenic 60.0%
ACGTCGTTGTGAGAGGCGAG+TGG + chr3_2:89691789-89691808 None:intergenic 60.0%
AACTCCGGCGACGACGACGA+AGG - chr3_2:89691747-89691766 Msa0436260:CDS 65.0%
TGTGAGAGGCGAGTGGGGGA+GGG + chr3_2:89691782-89691801 None:intergenic 65.0%
TTGTGAGAGGCGAGTGGGGG+AGG + chr3_2:89691783-89691802 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr3_2 gene 89691352 89693946 89691352 ID=Msa0436260;Name=Msa0436260
chr3_2 mRNA 89691352 89693946 89691352 ID=Msa0436260-mRNA-1;Parent=Msa0436260;Name=Msa0436260-mRNA-1;_AED=0.10;_eAED=0.10;_QI=172|1|1|1|0.83|0.71|7|345|331
chr3_2 exon 89691352 89691804 89691352 ID=Msa0436260-mRNA-1:exon:26689;Parent=Msa0436260-mRNA-1
chr3_2 exon 89691956 89692341 89691956 ID=Msa0436260-mRNA-1:exon:26688;Parent=Msa0436260-mRNA-1
chr3_2 exon 89692808 89692906 89692808 ID=Msa0436260-mRNA-1:exon:26687;Parent=Msa0436260-mRNA-1
chr3_2 exon 89693006 89693171 89693006 ID=Msa0436260-mRNA-1:exon:26686;Parent=Msa0436260-mRNA-1
chr3_2 exon 89693245 89693323 89693245 ID=Msa0436260-mRNA-1:exon:26685;Parent=Msa0436260-mRNA-1
chr3_2 exon 89693421 89693602 89693421 ID=Msa0436260-mRNA-1:exon:26684;Parent=Msa0436260-mRNA-1
chr3_2 exon 89693799 89693946 89693799 ID=Msa0436260-mRNA-1:exon:26683;Parent=Msa0436260-mRNA-1
chr3_2 five_prime_UTR 89693799 89693946 89693799 ID=Msa0436260-mRNA-1:five_prime_utr;Parent=Msa0436260-mRNA-1
chr3_2 five_prime_UTR 89693579 89693602 89693579 ID=Msa0436260-mRNA-1:five_prime_utr;Parent=Msa0436260-mRNA-1
chr3_2 CDS 89693421 89693578 89693421 ID=Msa0436260-mRNA-1:cds;Parent=Msa0436260-mRNA-1
chr3_2 CDS 89693245 89693323 89693245 ID=Msa0436260-mRNA-1:cds;Parent=Msa0436260-mRNA-1
chr3_2 CDS 89693006 89693171 89693006 ID=Msa0436260-mRNA-1:cds;Parent=Msa0436260-mRNA-1
chr3_2 CDS 89692808 89692906 89692808 ID=Msa0436260-mRNA-1:cds;Parent=Msa0436260-mRNA-1
chr3_2 CDS 89691956 89692341 89691956 ID=Msa0436260-mRNA-1:cds;Parent=Msa0436260-mRNA-1
chr3_2 CDS 89691697 89691804 89691697 ID=Msa0436260-mRNA-1:cds;Parent=Msa0436260-mRNA-1
chr3_2 three_prime_UTR 89691352 89691696 89691352 ID=Msa0436260-mRNA-1:three_prime_utr;Parent=Msa0436260-mRNA-1
Gene Sequence

>Msa0436260

ATGTCATCATCGGCGGTGAGAAGCAAGAACTCCGGCGACGACGACGAAGGCAAACACTACCCTCCCCCACTCGCCTCTCACAACGACGTCGTTAACGACCCTACTCTCTTTTGGGACACTCTTCGTCGCTTTCACTTTCTCATGGCTACCAAATTCATGATTCCTGTGATTGGTGGTAAGGAGCTTGATTTGCACGTTCTCTACGTGGAAGTTACAAGGAGAAGCGGTTATGAGAAGGTTGTTGCAGAGAAGAAATGGAGAGAAGTAGGTAGTGTATTTAGATTCTCATCCACCACTACAAGCGCTTCTTTTGTACTAAGAAAACACTATTTGAATCTTCTTTATCATTACGAACAAGTTCACTTCTTCAAAGTTCAGGGTCCTATTTACACCCCCTCACCAGATGCATTTTCTGGTAACAGTCCATCGTGGAAACCTGAATTAGCTATTGTTCAATATTCACCTAAGATGGTAAATTATAGTGCTGAATCTCATGATGAAGTTCATGTAGACGATGATTCACGTCTTTTGGGAAAAGGAACAATAGAAGGAAAATTTGATTGTGGTTATATAGTGTCAGTGAAATTGGGTTCAGAAGTTCTCAAAGGGGTGCTTTACCATCCAGAAAAAGCGGTTTCTCCTTCATCATTGGTTACACAACACAACGGTGCCATTGAGCCATTCAATCACCAAACTCATCGCTTGGGTAGGAGGAAGAGAAGAAAAAGAAAGTGGGATCCCAACTATCCAAAGCCAAATAGGAGTGGCTATAACTTTTTCTTTGCTGAAAAGCATTACAAGCTCAAAGAACTCTACCCAAACAGAGAAAGGGAGTTTACCAAAATGATTGGTCAGTCCTGGAATAGTCTCAGCTCTGAAGAAAGAATGATTTACCAAAACATTGGCTTAAGGGACAAAGAAAGGTACAAAAGAGAGTTGACGGAGTACAAACAGAAAATGAAGGTTGTGCAGACAGAAGAACTCGGGCGTCCATAA

Protein sequence

>Msa0436260

MSSSAVRSKNSGDDDEGKHYPPPLASHNDVVNDPTLFWDTLRRFHFLMATKFMIPVIGGKELDLHVLYVEVTRRSGYEKVVAEKKWREVGSVFRFSSTTTSASFVLRKHYLNLLYHYEQVHFFKVQGPIYTPSPDAFSGNSPSWKPELAIVQYSPKMVNYSAESHDEVHVDDDSRLLGKGTIEGKFDCGYIVSVKLGSEVLKGVLYHPEKAVSPSSLVTQHNGAIEPFNHQTHRLGRRKRRKRKWDPNYPKPNRSGYNFFFAEKHYKLKELYPNREREFTKMIGQSWNSLSSEERMIYQNIGLRDKERYKRELTEYKQKMKVVQTEELGRP*