Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0011410 | Msa0040470 | -0.808676 | 2.754520e-50 | -8.615850e-47 |
| Msa0011440 | Msa0040470 | -0.803447 | 3.470815e-49 | -8.615850e-47 |
| Msa0011450 | Msa0040470 | -0.805359 | 1.386986e-49 | -8.615850e-47 |
| Msa0040470 | Msa0042520 | -0.800689 | 1.281116e-48 | -8.615850e-47 |
| Msa0040470 | Msa0063940 | 0.800746 | 1.247440e-48 | -8.615850e-47 |
| Msa0040470 | Msa0066890 | -0.811901 | 5.552287e-51 | -8.615850e-47 |
| Msa0040470 | Msa0112880 | -0.816782 | 4.629599e-52 | -8.615850e-47 |
| Msa0040470 | Msa0113370 | -0.808826 | 2.559225e-50 | -8.615850e-47 |
| Msa0040470 | Msa0135030 | 0.908982 | 9.411472e-82 | -8.615850e-47 |
| Msa0040470 | Msa0151380 | -0.805001 | 1.648107e-49 | -8.615850e-47 |
| Msa0040470 | Msa0154880 | -0.815396 | 9.443832e-52 | -8.615850e-47 |
| Msa0040470 | Msa0154890 | -0.811529 | 6.688659e-51 | -8.615850e-47 |
| Msa0040470 | Msa0285890 | 0.803962 | 2.714138e-49 | -8.615850e-47 |
| Msa0040470 | Msa0293720 | 0.803979 | 2.691676e-49 | -8.615850e-47 |
| Msa0040470 | Msa0304730 | 0.810204 | 1.294667e-50 | -8.615850e-47 |
| Msa0040470 | Msa0331580 | 0.829098 | 6.225033e-55 | -8.615850e-47 |
| Msa0040470 | Msa0383870 | -0.802017 | 6.848913e-49 | -8.615850e-47 |
| Msa0040470 | Msa0534610 | 0.801620 | 8.262744e-49 | -8.615850e-47 |
| Msa0040470 | Msa0548420 | 0.800784 | 1.224895e-48 | -8.615850e-47 |
| Msa0040470 | Msa0590620 | -0.845050 | 5.172593e-59 | -8.615850e-47 |
| Msa0040470 | Msa0590810 | 0.805391 | 1.365227e-49 | -8.615850e-47 |
| Msa0040470 | Msa0597370 | -0.805018 | 1.634165e-49 | -8.615850e-47 |
| Msa0040470 | Msa0603310 | 0.805662 | 1.198003e-49 | -8.615850e-47 |
| Msa0040470 | Msa0637590 | 0.815503 | 8.941923e-52 | -8.615850e-47 |
| Msa0040470 | Msa0637700 | 0.800367 | 1.490221e-48 | -8.615850e-47 |
| Msa0040470 | Msa0644330 | 0.806342 | 8.618108e-50 | -8.615850e-47 |
| Msa0040470 | Msa0644340 | 0.832981 | 6.932325e-56 | -8.615850e-47 |
| Msa0040470 | Msa0669350 | 0.800131 | 1.663895e-48 | -8.615850e-47 |
| Msa0040470 | Msa0676570 | -0.812825 | 3.489451e-51 | -8.615850e-47 |
| Msa0040470 | Msa0742370 | -0.812295 | 4.554846e-51 | -8.615850e-47 |
| Msa0040470 | Msa0744640 | 0.803704 | 3.070826e-49 | -8.615850e-47 |
| Msa0040470 | Msa0779450 | -0.805714 | 1.168240e-49 | -8.615850e-47 |
| Msa0040470 | Msa0800150 | 0.808160 | 3.549411e-50 | -8.615850e-47 |
| Msa0040470 | Msa0841730 | 0.803194 | 3.916549e-49 | -8.615850e-47 |
| Msa0040470 | Msa0862480 | -0.806825 | 6.813945e-50 | -8.615850e-47 |
| Msa0040470 | Msa0881880 | -0.820420 | 6.923632e-53 | -8.615850e-47 |
| Msa0040470 | Msa0901270 | 0.815122 | 1.086823e-51 | -8.615850e-47 |
| Msa0040470 | Msa0905570 | 0.824254 | 8.917673e-54 | -8.615850e-47 |
| Msa0040470 | Msa0946110 | 0.814476 | 1.510741e-51 | -8.615850e-47 |
| Msa0040470 | Msa0966580 | 0.807477 | 4.958879e-50 | -8.615850e-47 |
| Msa0040470 | Msa1001120 | 0.822732 | 2.023881e-53 | -8.615850e-47 |
| Msa0040470 | Msa1011140 | -0.812646 | 3.818752e-51 | -8.615850e-47 |
| Msa0040470 | Msa1167310 | 0.808901 | 2.465840e-50 | -8.615850e-47 |
| Msa0040470 | Msa1202800 | 0.802465 | 5.539948e-49 | -8.615850e-47 |
| Msa0040470 | Msa1219530 | -0.819793 | 9.638459e-53 | -8.615850e-47 |
| Msa0040470 | Msa1221270 | 0.803665 | 3.127954e-49 | -8.615850e-47 |
| Msa0040470 | Msa1223710 | 0.815098 | 1.099895e-51 | -8.615850e-47 |
| Msa0040470 | Msa1255480 | -0.804325 | 2.280070e-49 | -8.615850e-47 |
| Msa0040470 | Msa1268390 | 0.802172 | 6.365089e-49 | -8.615850e-47 |
| Msa0040470 | Msa1289050 | 0.803046 | 4.202692e-49 | -8.615850e-47 |
| Msa0040470 | Msa1289090 | 0.805569 | 1.252921e-49 | -8.615850e-47 |
| Msa0040470 | Msa1301280 | -0.802629 | 5.122945e-49 | -8.615850e-47 |
| Msa0040470 | Msa1333220 | -0.822763 | 1.990737e-53 | -8.615850e-47 |
| Msa0040470 | Msa1360070 | -0.815003 | 1.154753e-51 | -8.615850e-47 |
| Msa0040470 | Msa1372770 | -0.808618 | 2.834185e-50 | -8.615850e-47 |
| Msa0040470 | Msa1405530 | 0.801824 | 7.502118e-49 | -8.615850e-47 |
| Msa0040470 | Msa1409360 | -0.818872 | 1.562760e-52 | -8.615850e-47 |
| Msa0040470 | Msa1462210 | -0.815386 | 9.492713e-52 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0040470 | MtrunA17_Chr1g0205481 | 93.407 | 364 | 23 | 1 | 1 | 363 | 1 | 364 | 0.0 | 698 |
| Msa0040470 | MtrunA17_Chr1g0205491 | 80.000 | 365 | 71 | 2 | 1 | 363 | 1 | 365 | 0.0 | 595 |
| Msa0040470 | MtrunA17_Chr1g0160271 | 69.780 | 364 | 71 | 2 | 1 | 363 | 1 | 326 | 1.92e-180 | 503 |
| Msa0040470 | MtrunA17_Chr1g0160261 | 59.908 | 217 | 36 | 1 | 52 | 268 | 1 | 166 | 7.81e-76 | 232 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0040470 | AT3G54970.1 | 49.311 | 363 | 166 | 7 | 1 | 358 | 1 | 350 | 8.36e-108 | 320 |
| Msa0040470 | AT3G54970.4 | 50.321 | 312 | 140 | 6 | 52 | 358 | 1 | 302 | 8.95e-90 | 272 |
| Msa0040470 | AT3G54970.2 | 50.667 | 300 | 131 | 6 | 1 | 296 | 1 | 287 | 9.41e-88 | 267 |
| Msa0040470 | AT3G54970.6 | 50.498 | 301 | 132 | 6 | 1 | 297 | 1 | 288 | 1.11e-87 | 267 |
| Msa0040470 | AT3G54970.5 | 47.794 | 272 | 125 | 6 | 1 | 268 | 1 | 259 | 5.95e-70 | 220 |
| Msa0040470 | AT3G54970.3 | 52.000 | 250 | 106 | 5 | 52 | 297 | 1 | 240 | 9.78e-70 | 219 |
Find 107 sgRNAs with CRISPR-Local
Find 273 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AACTCTTGTTACTGGTAATT+TGG | 0.120632 | 1_1:-70635988 | Msa0040470:CDS |
| TAAAACCAATGTCAAGTTTA+AGG | 0.187712 | 1_1:-70636961 | Msa0040470:exon |
| CATGTACATATGTTACTTAT+TGG | 0.218165 | 1_1:+70633406 | None:intergenic |
| GTGCTTCATGCTTGATGTTT+TGG | 0.241820 | 1_1:-70636229 | Msa0040470:CDS |
| GGGAAAGCCCCGTCTGATTA+TGG | 0.267527 | 1_1:-70634863 | Msa0040470:CDS |
| TATCTGTGTTTGAATAAATT+AGG | 0.281711 | 1_1:-70633018 | Msa0040470:three_prime_UTR |
| AGTTGCCAAGCTGGCAAATT+TGG | 0.291135 | 1_1:+70636101 | None:intergenic |
| ATCAGTGATGGTGTTCTTCC+AGG | 0.297425 | 1_1:-70634806 | Msa0040470:CDS |
| ATCATTACAACTCTTGTTAC+TGG | 0.301146 | 1_1:-70635996 | Msa0040470:CDS |
| GCAACATGCAGATAGTATTC+AGG | 0.308908 | 1_1:-70633912 | Msa0040470:CDS |
| TATAGGTAAATCAACTTCTT+AGG | 0.310327 | 1_1:-70633185 | Msa0040470:three_prime_UTR |
| CATGGTCAAAACATGAAATC+TGG | 0.311226 | 1_1:-70634430 | Msa0040470:CDS |
| AAACCTGGAAGGATATATTA+TGG | 0.312262 | 1_1:-70633859 | Msa0040470:CDS |
| ATGGTGAACATTTGGCTCTT+GGG | 0.316215 | 1_1:-70635857 | Msa0040470:CDS |
| ACATATGTTTGCTTAATTAG+AGG | 0.317335 | 1_1:+70633132 | None:intergenic |
| TTTCATCCCAGCAAAGGTTT+AGG | 0.328982 | 1_1:+70633375 | None:intergenic |
| ACTTATGTTCCTCCTAAGTT+TGG | 0.337551 | 1_1:-70635891 | Msa0040470:CDS |
| GGTCCATAATATATCCTTCC+AGG | 0.346055 | 1_1:+70633856 | None:intergenic |
| ACTAGTTGGCGTATTATTCC+TGG | 0.368986 | 1_1:+70634788 | None:intergenic |
| TGAAGATCCTAAACCTTTGC+TGG | 0.374367 | 1_1:-70633382 | Msa0040470:three_prime_UTR |
| ATCTACTCGTTGAGAAACTA+TGG | 0.381263 | 1_1:+70633293 | None:intergenic |
| GACGCTTGTTAATGATTCAT+TGG | 0.382944 | 1_1:-70636069 | Msa0040470:CDS |
| AATGGTGAACATTTGGCTCT+TGG | 0.383408 | 1_1:-70635858 | Msa0040470:CDS |
| TTCCTCCTAAGTTTGGTATC+CGG | 0.384096 | 1_1:-70635884 | Msa0040470:CDS |
| CCGGGGAAATGGTGAACATT+TGG | 0.392063 | 1_1:-70635865 | Msa0040470:CDS |
| AAACCTTTGCTGGGATGAAA+TGG | 0.395756 | 1_1:-70633372 | Msa0040470:three_prime_UTR |
| GTCTGTAACTGTGCTATAAC+TGG | 0.400062 | 1_1:-70633041 | Msa0040470:three_prime_UTR |
| CAGACATCATATCGGTAAAC+TGG | 0.400792 | 1_1:+70633253 | None:intergenic |
| TAGGATTCGGTTTCCGATGA+TGG | 0.405731 | 1_1:-70634884 | Msa0040470:CDS |
| TTTAAGGTATCTCTTCAGTA+AGG | 0.413390 | 1_1:-70636945 | Msa0040470:CDS |
| GGATATATTATGGACCAAAA+AGG | 0.414457 | 1_1:-70633849 | Msa0040470:CDS |
| TGTCACCAAATTTGCCAGCT+TGG | 0.417229 | 1_1:-70636106 | Msa0040470:CDS |
| TGCAATGCCAGTTGCCAAGC+TGG | 0.421693 | 1_1:+70636092 | None:intergenic |
| AAATTTGCCAGCTTGGCAAC+TGG | 0.421983 | 1_1:-70636099 | Msa0040470:CDS |
| GAACTGTTGCTGTCTTATAA+TGG | 0.422416 | 1_1:-70635573 | Msa0040470:CDS |
| TGCACTTGTGCAGGGTATGC+AGG | 0.429202 | 1_1:-70634487 | Msa0040470:intron |
| GGTTATGGAGAAAGCAACTT+TGG | 0.430081 | 1_1:-70633437 | Msa0040470:CDS |
| AAGTTTGGTATCCGGGGAAA+TGG | 0.431130 | 1_1:-70635876 | Msa0040470:CDS |
| CTCTACTTTCTCTGTCTGTC+TGG | 0.431343 | 1_1:-70637324 | Msa0040470:intron |
| CAGCTGCAAAATATTCAGAT+TGG | 0.435154 | 1_1:-70635815 | Msa0040470:CDS |
| GTCTTTCTTGAAGCTCATCC+AGG | 0.435273 | 1_1:-70636884 | Msa0040470:intron |
| AAACAGAAACAAAATAATAT+AGG | 0.436029 | 1_1:-70633202 | Msa0040470:three_prime_UTR |
| ATGTTGCTAACATGGCCTTT+TGG | 0.436630 | 1_1:+70633156 | None:intergenic |
| TCCTCCTAAGTTTGGTATCC+GGG | 0.437870 | 1_1:-70635883 | Msa0040470:CDS |
| AGACACACAATCATAAATCT+AGG | 0.451560 | 1_1:+70633060 | None:intergenic |
| AGCTGCAAAATATTCAGATT+GGG | 0.452477 | 1_1:-70635814 | Msa0040470:CDS |
| TTAGGATAAAACAGAATTTG+TGG | 0.457122 | 1_1:-70633000 | Msa0040470:three_prime_UTR |
| CTAATTAAGCAAACATATGT+TGG | 0.461263 | 1_1:-70633129 | Msa0040470:three_prime_UTR |
| ATGTATACGCCAACTGAAGC+GGG | 0.466676 | 1_1:+70633324 | None:intergenic |
| AATGGTGATCAAATACTTGA+AGG | 0.473996 | 1_1:-70635555 | Msa0040470:CDS |
| TGGTGAACATTTGGCTCTTG+GGG | 0.474598 | 1_1:-70635856 | Msa0040470:CDS |
| GGAAGAACACCATCACTGAT+AGG | 0.475333 | 1_1:+70634809 | None:intergenic |
| CAAAATATTCAGATTGGGTA+AGG | 0.485171 | 1_1:-70635809 | Msa0040470:intron |
| ATGAGCTTCAAGAAAGACTT+TGG | 0.489943 | 1_1:+70636889 | None:intergenic |
| GAGTAAATGCAGGATGGACC+AGG | 0.497705 | 1_1:-70633758 | Msa0040470:intron |
| AGGATTCGGTTTCCGATGAT+GGG | 0.501749 | 1_1:-70634883 | Msa0040470:CDS |
| TAATTAAGCAAACATATGTT+GGG | 0.506412 | 1_1:-70633128 | Msa0040470:three_prime_UTR |
| AACAACTTAACGAATAAGTC+AGG | 0.506651 | 1_1:-70633230 | Msa0040470:three_prime_UTR |
| GATGATCACAACTTTAATCC+AGG | 0.513020 | 1_1:-70633735 | Msa0040470:intron |
| ATGGTCAAAACATGAAATCT+GGG | 0.513865 | 1_1:-70634429 | Msa0040470:CDS |
| CTTCTTAGGCCACCTCCAAA+AGG | 0.515254 | 1_1:-70633171 | Msa0040470:three_prime_UTR |
| TGTTAATGATTCATTGGAGA+AGG | 0.516406 | 1_1:-70636063 | Msa0040470:CDS |
| ATGGAGAAAGCAACTTTGGA+AGG | 0.520760 | 1_1:-70633433 | Msa0040470:CDS |
| TTAGAGGCATGTTGCTAACA+TGG | 0.524435 | 1_1:+70633148 | None:intergenic |
| GTTTCTCAACGAGTAGATGA+TGG | 0.529115 | 1_1:-70633288 | Msa0040470:three_prime_UTR |
| TGATGCTGGTCCGATCTGAT+TGG | 0.534555 | 1_1:-70633093 | Msa0040470:three_prime_UTR |
| TGGGCTGATTGCCATTCTGT+TGG | 0.539164 | 1_1:+70633887 | None:intergenic |
| AAGTTGTTCAGACATCATAT+CGG | 0.542791 | 1_1:+70633245 | None:intergenic |
| TTTCCCCGGATACCAAACTT+AGG | 0.547775 | 1_1:+70635879 | None:intergenic |
| GTCGAGAAGTTGCTCCATCA+TGG | 0.549818 | 1_1:-70634448 | Msa0040470:CDS |
| CCAAATGTTCACCATTTCCC+CGG | 0.552551 | 1_1:+70635865 | None:intergenic |
| ATGCAGGATTAGGAAGACTC+TGG | 0.555761 | 1_1:-70635622 | Msa0040470:intron |
| AGCAACAGTTCTGTCACTGA+TGG | 0.558246 | 1_1:+70635585 | None:intergenic |
| AACCATACTCAAGTACTAGT+TGG | 0.567061 | 1_1:+70634774 | None:intergenic |
| CAATAAGTAACATATGTACA+TGG | 0.567230 | 1_1:-70633405 | Msa0040470:CDS |
| TGTCCATTTCATCCCAGCAA+AGG | 0.567939 | 1_1:+70633369 | None:intergenic |
| ATGTCATTGCAGATAGCTTG+AGG | 0.568100 | 1_1:-70633940 | Msa0040470:intron |
| AGACGGGGCTTTCCCATCAT+CGG | 0.568285 | 1_1:+70634871 | None:intergenic |
| ATTAAAGTTGTGATCATCCC+TGG | 0.570286 | 1_1:+70633740 | None:intergenic |
| TCAGATTTAAATATGAGTTG+AGG | 0.570431 | 1_1:+70636152 | None:intergenic |
| TGCAGGGTATGCAGGAGTGA+AGG | 0.571410 | 1_1:-70634479 | Msa0040470:intron |
| AATCAGCCCATTCTAAAACC+TGG | 0.574405 | 1_1:-70633874 | Msa0040470:CDS |
| GTATTCAGGTTCCAACAGAA+TGG | 0.575665 | 1_1:-70633898 | Msa0040470:CDS |
| TTAAGGTATCTCTTCAGTAA+GGG | 0.578227 | 1_1:-70636944 | Msa0040470:CDS |
| AGATACCTTAAACTTGACAT+TGG | 0.580792 | 1_1:+70636956 | None:intergenic |
| AATGTATACGCCAACTGAAG+CGG | 0.583333 | 1_1:+70633323 | None:intergenic |
| TCAAGAAAGACTTTGGCTAG+TGG | 0.583528 | 1_1:+70636896 | None:intergenic |
| AACAGTTCTGTCACTGATGG+AGG | 0.583762 | 1_1:+70635588 | None:intergenic |
| AGCCCATTCTAAAACCTGGA+AGG | 0.604355 | 1_1:-70633870 | Msa0040470:CDS |
| CCCCGGATACCAAACTTAGG+AGG | 0.607203 | 1_1:+70635882 | None:intergenic |
| GAAGATCCTAAACCTTTGCT+GGG | 0.615855 | 1_1:-70633381 | Msa0040470:three_prime_UTR |
| CAGACAGCTCCTATCAGTGA+TGG | 0.620267 | 1_1:-70634818 | Msa0040470:CDS |
| CCTCCTAAGTTTGGTATCCG+GGG | 0.621860 | 1_1:-70635882 | Msa0040470:CDS |
| GAACATCTGAGGTGTGTGAA+AGG | 0.622112 | 1_1:+70636918 | None:intergenic |
| ATGGAGCAACTTCTCGACAC+GGG | 0.622767 | 1_1:+70634453 | None:intergenic |
| TTTGGCTAGTGGAACATCTG+AGG | 0.635357 | 1_1:+70636907 | None:intergenic |
| GGTGAACATTTGGCTCTTGG+GGG | 0.636572 | 1_1:-70635855 | Msa0040470:CDS |
| TGTATACGCCAACTGAAGCG+GGG | 0.639314 | 1_1:+70633325 | None:intergenic |
| GCTGGCAAATTTGGTGACAA+TGG | 0.641423 | 1_1:+70636110 | None:intergenic |
| GTATACGCCAACTGAAGCGG+GGG | 0.660242 | 1_1:+70633326 | None:intergenic |
| CAGTTACAGACCAATCAGAT+CGG | 0.662133 | 1_1:+70633083 | None:intergenic |
| AGTAAATGCAGGATGGACCA+GGG | 0.672480 | 1_1:-70633757 | Msa0040470:intron |
| GATGGAGCAACTTCTCGACA+CGG | 0.682400 | 1_1:+70634452 | None:intergenic |
| TGTGTGTGAGACTATATCTG+AGG | 0.690079 | 1_1:-70635955 | Msa0040470:CDS |
| GTGTGTGAGACTATATCTGA+GGG | 0.693616 | 1_1:-70635954 | Msa0040470:CDS |
| GTCAAAACATGAAATCTGGG+AGG | 0.703539 | 1_1:-70634426 | Msa0040470:CDS |
| TTTATTTCCATAATCAGACG+GGG | 0.704888 | 1_1:+70634856 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | GAAAGTTATTTATTTATTTT+AGG | + | chr1_1:70633229-70633248 | None:intergenic | 10.0% |
| !! | TTACTTTATACTTATTTATA+TGG | - | chr1_1:70635388-70635407 | Msa0040470:intron | 10.0% |
| !!! | TAATTTATTTCTATAACTTT+TGG | + | chr1_1:70635759-70635778 | None:intergenic | 10.0% |
| !! | AAAAATCTAAAAAATGAAAG+GGG | + | chr1_1:70633052-70633071 | None:intergenic | 15.0% |
| !! | CAAAAATCTAAAAAATGAAA+GGG | + | chr1_1:70633053-70633072 | None:intergenic | 15.0% |
| !! | TTAATCATTATAAATAGGTA+TGG | + | chr1_1:70635082-70635101 | None:intergenic | 15.0% |
| !!! | GGTTTTTAATCATTATAAAT+AGG | + | chr1_1:70635087-70635106 | None:intergenic | 15.0% |
| !! | TTGTAAATAACATAAAATTC+TGG | + | chr1_1:70635673-70635692 | None:intergenic | 15.0% |
| !!! | GAATTTTATGTTATTTACAA+TGG | - | chr1_1:70635673-70635692 | Msa0040470:intron | 15.0% |
| !!! | ATATTATTTTGTTTCTGTTT+TGG | + | chr1_1:70637138-70637157 | None:intergenic | 15.0% |
| !! | AAACAGAAACAAAATAATAT+AGG | - | chr1_1:70637138-70637157 | Msa0040470:intron | 15.0% |
| !! | GCAAAAATCTAAAAAATGAA+AGG | + | chr1_1:70633054-70633073 | None:intergenic | 20.0% |
| !! | AATAAGTTGTAAACAGATTA+TGG | + | chr1_1:70633674-70633693 | None:intergenic | 20.0% |
| !! | TAACTTATATCAGAACAATT+TGG | - | chr1_1:70633732-70633751 | Msa0040470:intron | 20.0% |
| !!! | CAAAATTTGAGATAATTACA+GGG | + | chr1_1:70633880-70633899 | None:intergenic | 20.0% |
| !!! | ACAAAATTTGAGATAATTAC+AGG | + | chr1_1:70633881-70633900 | None:intergenic | 20.0% |
| !! | AGAAAATTAACACTGAAATT+TGG | + | chr1_1:70634643-70634662 | None:intergenic | 20.0% |
| !!! | TTTTATGTTCAAATTTTAGG+AGG | + | chr1_1:70634947-70634966 | None:intergenic | 20.0% |
| !!! | AGGTTTTATGTTCAAATTTT+AGG | + | chr1_1:70634950-70634969 | None:intergenic | 20.0% |
| !! | AGTAAATTCCTACTATTATT+TGG | - | chr1_1:70635144-70635163 | Msa0040470:intron | 20.0% |
| !! | GTAAATTCCTACTATTATTT+GGG | - | chr1_1:70635145-70635164 | Msa0040470:intron | 20.0% |
| !! | ATAAACAGAATTTAAACCAA+TGG | + | chr1_1:70635219-70635238 | None:intergenic | 20.0% |
| !!! | TTTTTATTTCCATAATCAGA+CGG | + | chr1_1:70635489-70635508 | None:intergenic | 20.0% |
| !! | ATACTATAAAGATGTTTCAT+TGG | + | chr1_1:70635784-70635803 | None:intergenic | 20.0% |
| !!! | TATTTTTTTTAGTCTTACTG+AGG | - | chr1_1:70635975-70635994 | Msa0040470:CDS | 20.0% |
| !! | AAATAACCAAACTTGTAAAT+AGG | + | chr1_1:70636254-70636273 | None:intergenic | 20.0% |
| !!! | TTTATTGGTTTTGTTAACTT+GGG | - | chr1_1:70636372-70636391 | Msa0040470:intron | 20.0% |
| !! | AAGTAGTAAATAAATTTACC+TGG | + | chr1_1:70636626-70636645 | None:intergenic | 20.0% |
| !!! | GTTTTATAATTGCAAATGTT+GGG | + | chr1_1:70636854-70636873 | None:intergenic | 20.0% |
| !! | TAATTAAGCAAACATATGTT+GGG | - | chr1_1:70637212-70637231 | Msa0040470:intron | 20.0% |
| !! | TATCTGTGTTTGAATAAATT+AGG | - | chr1_1:70637322-70637341 | Msa0040470:intron | 20.0% |
| ! | TCTCATGTGATATAGTTTAT+TGG | - | chr1_1:70633286-70633305 | Msa0040470:three_prime_UTR | 25.0% |
| !!! | CATTGGTTTTATTATCTTTG+AGG | + | chr1_1:70633370-70633389 | None:intergenic | 25.0% |
| ! | TAAAACCAATGTCAAGTTTA+AGG | - | chr1_1:70633379-70633398 | Msa0040470:three_prime_UTR | 25.0% |
| !!! | GGGTTTACAAAGTATTTTAT+CGG | + | chr1_1:70633529-70633548 | None:intergenic | 25.0% |
| ! | TCATAAATTAACCAGGAAAA+GGG | + | chr1_1:70633549-70633568 | None:intergenic | 25.0% |
| !!! | ACAAAAGTGCATGTTTTTAA+TGG | + | chr1_1:70633942-70633961 | None:intergenic | 25.0% |
| !!! | ATGCACTTTTGTAATTTGTA+CGG | - | chr1_1:70633950-70633969 | Msa0040470:intron | 25.0% |
| ! | TCAGATTTAAATATGAGTTG+AGG | + | chr1_1:70634191-70634210 | None:intergenic | 25.0% |
| ! | ATAAAACCTGTTACAAATCA+TGG | - | chr1_1:70634961-70634980 | Msa0040470:intron | 25.0% |
| ! | ACTGTTAGAATATTAAAGCA+TGG | + | chr1_1:70634996-70635015 | None:intergenic | 25.0% |
| ! | CCAAAACAATTCGAAAATAA+AGG | + | chr1_1:70635108-70635127 | None:intergenic | 25.0% |
| !!! | CCTTTATTTTCGAATTGTTT+TGG | - | chr1_1:70635105-70635124 | Msa0040470:intron | 25.0% |
| !!! | TTCGAATTGTTTTGGATTAA+TGG | - | chr1_1:70635113-70635132 | Msa0040470:intron | 25.0% |
| ! | AATATGACCCAAATAATAGT+AGG | + | chr1_1:70635155-70635174 | None:intergenic | 25.0% |
| !!! | TTTTATTTCCATAATCAGAC+GGG | + | chr1_1:70635488-70635507 | None:intergenic | 25.0% |
| !!! | TCTGGTAAATTTTTCTAGAA+GGG | + | chr1_1:70635655-70635674 | None:intergenic | 25.0% |
| !! | TTCTGGTAAATTTTTCTAGA+AGG | + | chr1_1:70635656-70635675 | None:intergenic | 25.0% |
| !! | CTCAACAAAAGTATAAAATC+CGG | - | chr1_1:70635703-70635722 | Msa0040470:intron | 25.0% |
| !! | TCAACAAAAGTATAAAATCC+GGG | - | chr1_1:70635704-70635723 | Msa0040470:intron | 25.0% |
| !!! | TAGAAAATAAAAGCACTAAC+AGG | - | chr1_1:70635803-70635822 | Msa0040470:intron | 25.0% |
| ! | TTTAAATGTGTCAAAATCCT+TGG | + | chr1_1:70636102-70636121 | None:intergenic | 25.0% |
| ! | GTAATTACAGCATATTAATG+TGG | + | chr1_1:70636171-70636190 | None:intergenic | 25.0% |
| ! | CAAGTTAACAAAACCAATAA+AGG | + | chr1_1:70636373-70636392 | None:intergenic | 25.0% |
| !!! | CTTTATTGGTTTTGTTAACT+TGG | - | chr1_1:70636371-70636390 | Msa0040470:intron | 25.0% |
| ! | TTAAGGTGGTAAATTTATAC+TGG | - | chr1_1:70636517-70636536 | Msa0040470:intron | 25.0% |
| !! | ACTACTTTCACATTTTGAAT+TGG | - | chr1_1:70636639-70636658 | Msa0040470:intron | 25.0% |
| !! | CTACTTTCACATTTTGAATT+GGG | - | chr1_1:70636640-70636659 | Msa0040470:intron | 25.0% |
| !!! | GGTTTTATAATTGCAAATGT+TGG | + | chr1_1:70636855-70636874 | None:intergenic | 25.0% |
| !!! | GATTAAAACAAAAGGCATTT+CGG | + | chr1_1:70636876-70636895 | None:intergenic | 25.0% |
| !!! | AAATGCCTTTTGTTTTAATC+AGG | - | chr1_1:70636876-70636895 | Msa0040470:intron | 25.0% |
| !! | CTTTTCCTGATTAAAACAAA+AGG | + | chr1_1:70636884-70636903 | None:intergenic | 25.0% |
| !!! | CTTTTGTTTTAATCAGGAAA+AGG | - | chr1_1:70636882-70636901 | Msa0040470:intron | 25.0% |
| !! | TTTTAATCAGGAAAAGGTTA+TGG | - | chr1_1:70636888-70636907 | Msa0040470:CDS | 25.0% |
| !! | CATGTACATATGTTACTTAT+TGG | + | chr1_1:70636937-70636956 | None:intergenic | 25.0% |
| ! | CAATAAGTAACATATGTACA+TGG | - | chr1_1:70636935-70636954 | Msa0040470:CDS | 25.0% |
| ! | TATAGGTAAATCAACTTCTT+AGG | - | chr1_1:70637155-70637174 | Msa0040470:intron | 25.0% |
| ! | ACATATGTTTGCTTAATTAG+AGG | + | chr1_1:70637211-70637230 | None:intergenic | 25.0% |
| ! | CTAATTAAGCAAACATATGT+TGG | - | chr1_1:70637211-70637230 | Msa0040470:intron | 25.0% |
| ! | TTAGGATAAAACAGAATTTG+TGG | - | chr1_1:70637340-70637359 | Msa0040470:five_prime_UTR | 25.0% |
| TATCACATGAGATTCTCATT+CGG | + | chr1_1:70633278-70633297 | None:intergenic | 30.0% | |
| !!! | TGCTATTTTTGCAGTGTAAA+TGG | - | chr1_1:70633312-70633331 | Msa0040470:three_prime_UTR | 30.0% |
| AGATACCTTAAACTTGACAT+TGG | + | chr1_1:70633387-70633406 | None:intergenic | 30.0% | |
| ! | TTTAAGGTATCTCTTCAGTA+AGG | - | chr1_1:70633395-70633414 | Msa0040470:exon | 30.0% |
| ! | TTAAGGTATCTCTTCAGTAA+GGG | - | chr1_1:70633396-70633415 | Msa0040470:exon | 30.0% |
| CTCATAAATTAACCAGGAAA+AGG | + | chr1_1:70633550-70633569 | None:intergenic | 30.0% | |
| GCTTAACTCATAAATTAACC+AGG | + | chr1_1:70633556-70633575 | None:intergenic | 30.0% | |
| TTATGAGTTAAGCGTATGTT+TGG | - | chr1_1:70633563-70633582 | Msa0040470:intron | 30.0% | |
| TAATGGAGAAACTGAAAAGT+GGG | + | chr1_1:70633925-70633944 | None:intergenic | 30.0% | |
| TTAATGGAGAAACTGAAAAG+TGG | + | chr1_1:70633926-70633945 | None:intergenic | 30.0% | |
| ! | ATCAACTTTGTTTCTTGTTC+AGG | - | chr1_1:70634059-70634078 | Msa0040470:intron | 30.0% |
| TGTTAATGATTCATTGGAGA+AGG | - | chr1_1:70634277-70634296 | Msa0040470:intron | 30.0% | |
| ATCATTACAACTCTTGTTAC+TGG | - | chr1_1:70634344-70634363 | Msa0040470:intron | 30.0% | |
| AACTCTTGTTACTGGTAATT+TGG | - | chr1_1:70634352-70634371 | Msa0040470:intron | 30.0% | |
| AGCTGCAAAATATTCAGATT+GGG | - | chr1_1:70634526-70634545 | Msa0040470:intron | 30.0% | |
| CAAAATATTCAGATTGGGTA+AGG | - | chr1_1:70634531-70634550 | Msa0040470:intron | 30.0% | |
| AGTTGCATCTAGTAATTTGA+AGG | + | chr1_1:70634688-70634707 | None:intergenic | 30.0% | |
| AATGGTGATCAAATACTTGA+AGG | - | chr1_1:70634785-70634804 | Msa0040470:CDS | 30.0% | |
| TAATTATCACCAAAGTTAGC+TGG | + | chr1_1:70635055-70635074 | None:intergenic | 30.0% | |
| TAATTGCATTTCAAGACCAT+TGG | - | chr1_1:70635200-70635219 | Msa0040470:intron | 30.0% | |
| ! | ATCGTTTCCTGTTTCATTTT+AGG | - | chr1_1:70635437-70635456 | Msa0040470:intron | 30.0% |
| !!! | TCCTGTTTCATTTTAGGATT+CGG | - | chr1_1:70635443-70635462 | Msa0040470:intron | 30.0% |
| TTTATTTCCATAATCAGACG+GGG | + | chr1_1:70635487-70635506 | None:intergenic | 30.0% | |
| !! | CTGGTAAATTTTTCTAGAAG+GGG | + | chr1_1:70635654-70635673 | None:intergenic | 30.0% |
| !!! | ATTTCATGTTTTGACCATGA+TGG | + | chr1_1:70635909-70635928 | None:intergenic | 30.0% |
| ATGGTCAAAACATGAAATCT+GGG | - | chr1_1:70635911-70635930 | Msa0040470:CDS | 30.0% | |
| CAGTACAAAATAGTATTCTC+AGG | + | chr1_1:70636198-70636217 | None:intergenic | 30.0% | |
| AAACCTGGAAGGATATATTA+TGG | - | chr1_1:70636481-70636500 | Msa0040470:intron | 30.0% | |
| GGATATATTATGGACCAAAA+AGG | - | chr1_1:70636491-70636510 | Msa0040470:intron | 30.0% | |
| ATGGACCAAAAAGGAATTTA+AGG | - | chr1_1:70636500-70636519 | Msa0040470:intron | 30.0% | |
| ! | TACCACCTTAAATTCCTTTT+TGG | + | chr1_1:70636508-70636527 | None:intergenic | 30.0% |
| TTCTCAATTTGAGTAAATGC+AGG | - | chr1_1:70636572-70636591 | Msa0040470:intron | 30.0% | |
| AAGTTGTTCAGACATCATAT+CGG | + | chr1_1:70637098-70637117 | None:intergenic | 30.0% | |
| AACAACTTAACGAATAAGTC+AGG | - | chr1_1:70637110-70637129 | Msa0040470:intron | 30.0% | |
| AGACACACAATCATAAATCT+AGG | + | chr1_1:70637283-70637302 | None:intergenic | 30.0% | |
| !! | ACTTTTTCTAGTAGCTCACT+TGG | - | chr1_1:70633152-70633171 | Msa0040470:three_prime_UTR | 35.0% |
| TGGTTGATCTAAGGGATTAA+AGG | - | chr1_1:70633172-70633191 | Msa0040470:three_prime_UTR | 35.0% | |
| ATGAGCTTCAAGAAAGACTT+TGG | + | chr1_1:70633454-70633473 | None:intergenic | 35.0% | |
| TTTGAATGTATCTGAGAACC+TGG | + | chr1_1:70633477-70633496 | None:intergenic | 35.0% | |
| ! | TACTTTGTAAACCCTTTTCC+TGG | - | chr1_1:70633535-70633554 | Msa0040470:intron | 35.0% |
| ACAGATTATGGACATGTCAT+AGG | + | chr1_1:70633662-70633681 | None:intergenic | 35.0% | |
| AAGCTATCTTAGAGAGCTTA+CGG | + | chr1_1:70633698-70633717 | None:intergenic | 35.0% | |
| TAACATATTTAGACCCTGCT+TGG | + | chr1_1:70633854-70633873 | None:intergenic | 35.0% | |
| AAAAGTGGGTATAGGGATTA+GGG | + | chr1_1:70633911-70633930 | None:intergenic | 35.0% | |
| GAAACTGAAAAGTGGGTATA+GGG | + | chr1_1:70633918-70633937 | None:intergenic | 35.0% | |
| AGAAACTGAAAAGTGGGTAT+AGG | + | chr1_1:70633919-70633938 | None:intergenic | 35.0% | |
| ! | GTACGGACTAAAAAGAGTTT+CGG | - | chr1_1:70633967-70633986 | Msa0040470:intron | 35.0% |
| AGTTTCGGAGACTAAACAAA+AGG | - | chr1_1:70633982-70634001 | Msa0040470:intron | 35.0% | |
| ! | CAAAAGGTGTAAACTTTACG+AGG | - | chr1_1:70633998-70634017 | Msa0040470:intron | 35.0% |
| ! | TGCTTCATGCTTGATGTTTT+GGG | - | chr1_1:70634112-70634131 | Msa0040470:intron | 35.0% |
| ! | GACGCTTGTTAATGATTCAT+TGG | - | chr1_1:70634271-70634290 | Msa0040470:intron | 35.0% |
| ACTTATGTTCCTCCTAAGTT+TGG | - | chr1_1:70634449-70634468 | Msa0040470:CDS | 35.0% | |
| CAGCTGCAAAATATTCAGAT+TGG | - | chr1_1:70634525-70634544 | Msa0040470:intron | 35.0% | |
| CTGAAATTTGGTATCGTCAA+AGG | + | chr1_1:70634631-70634650 | None:intergenic | 35.0% | |
| ! | TTTTTCTGCAATGCAGGATT+AGG | - | chr1_1:70634708-70634727 | Msa0040470:intron | 35.0% |
| GAACTGTTGCTGTCTTATAA+TGG | - | chr1_1:70634767-70634786 | Msa0040470:intron | 35.0% | |
| !!! | TTTTTTCGTTGTTATCCGCA+AGG | - | chr1_1:70634820-70634839 | Msa0040470:CDS | 35.0% |
| CACATATGGTTACTAACCAA+AGG | + | chr1_1:70634917-70634936 | None:intergenic | 35.0% | |
| TAGGAGGAAATACACACATA+TGG | + | chr1_1:70634931-70634950 | None:intergenic | 35.0% | |
| AACCTGTTACAAATCATGGT+TGG | - | chr1_1:70634965-70634984 | Msa0040470:intron | 35.0% | |
| ACCTGTTACAAATCATGGTT+GGG | - | chr1_1:70634966-70634985 | Msa0040470:intron | 35.0% | |
| AAGTTAGCTGGAATAGTTGT+AGG | + | chr1_1:70635043-70635062 | None:intergenic | 35.0% | |
| ACAACTATTCCAGCTAACTT+TGG | - | chr1_1:70635043-70635062 | Msa0040470:intron | 35.0% | |
| TGAAATAAGCTTATGCGTCA+TGG | - | chr1_1:70635362-70635381 | Msa0040470:intron | 35.0% | |
| ACCGAATCCTAAAATGAAAC+AGG | + | chr1_1:70635447-70635466 | None:intergenic | 35.0% | |
| AACCATACTCAAGTACTAGT+TGG | + | chr1_1:70635569-70635588 | None:intergenic | 35.0% | |
| ACTAGTACTTGAGTATGGTT+TGG | - | chr1_1:70635569-70635588 | Msa0040470:CDS | 35.0% | |
| TTATCTCATTTGATGGAGAG+TGG | - | chr1_1:70635729-70635748 | Msa0040470:intron | 35.0% | |
| !! | AGGTTATTTCTCATGTGACT+TGG | - | chr1_1:70635823-70635842 | Msa0040470:CDS | 35.0% |
| CATGGTCAAAACATGAAATC+TGG | - | chr1_1:70635910-70635929 | Msa0040470:CDS | 35.0% | |
| AACTTCGCAAATTGTTCGTT+TGG | - | chr1_1:70636007-70636026 | Msa0040470:CDS | 35.0% | |
| TACTGCTAGATCGAAATCAA+TGG | - | chr1_1:70636076-70636095 | Msa0040470:CDS | 35.0% | |
| TGCTGACCTATTTACAAGTT+TGG | - | chr1_1:70636245-70636264 | Msa0040470:CDS | 35.0% | |
| CAATGACATTGTATGTCAGT+TGG | - | chr1_1:70636276-70636295 | Msa0040470:intron | 35.0% | |
| GATTTCAGACTCTCCTTTAT+TGG | - | chr1_1:70636357-70636376 | Msa0040470:intron | 35.0% | |
| !!! | ATCCTTCCAGGTTTTAGAAT+GGG | + | chr1_1:70636475-70636494 | None:intergenic | 35.0% |
| !!! | TATCCTTCCAGGTTTTAGAA+TGG | + | chr1_1:70636476-70636495 | None:intergenic | 35.0% |
| GACCAAAAAGGAATTTAAGG+TGG | - | chr1_1:70636503-70636522 | Msa0040470:intron | 35.0% | |
| CAATTTGAGTAAATGCAGGA+TGG | - | chr1_1:70636576-70636595 | Msa0040470:intron | 35.0% | |
| ATTAAAGTTGTGATCATCCC+TGG | + | chr1_1:70636603-70636622 | None:intergenic | 35.0% | |
| GATGATCACAACTTTAATCC+AGG | - | chr1_1:70636605-70636624 | Msa0040470:intron | 35.0% | |
| ! | TCACATTTTGAATTGGGACT+TGG | - | chr1_1:70636646-70636665 | Msa0040470:intron | 35.0% |
| ! | CACATTTTGAATTGGGACTT+GGG | - | chr1_1:70636647-70636666 | Msa0040470:intron | 35.0% |
| GTAAATGGACAGATGCATAA+TGG | + | chr1_1:70636705-70636724 | None:intergenic | 35.0% | |
| TATGCATCTGTCCATTTACA+CGG | - | chr1_1:70636706-70636725 | Msa0040470:intron | 35.0% | |
| ATCTACTCGTTGAGAAACTA+TGG | + | chr1_1:70637050-70637069 | None:intergenic | 35.0% | |
| CTAAAAAATGAAAGGGGACG+AGG | + | chr1_1:70633046-70633065 | None:intergenic | 40.0% | |
| TCTTCCTTCACTTCCTTGTT+TGG | - | chr1_1:70633087-70633106 | Msa0040470:three_prime_UTR | 40.0% | |
| ATCACCAAACAAGGAAGTGA+AGG | + | chr1_1:70633094-70633113 | None:intergenic | 40.0% | |
| ! | TTCACTTCCTTGTTTGGTGA+TGG | - | chr1_1:70633093-70633112 | Msa0040470:three_prime_UTR | 40.0% |
| TAGATCACCATCACCAAACA+AGG | + | chr1_1:70633103-70633122 | None:intergenic | 40.0% | |
| TAGCTCACTTGGTTGATCTA+AGG | - | chr1_1:70633163-70633182 | Msa0040470:three_prime_UTR | 40.0% | |
| AGCTCACTTGGTTGATCTAA+GGG | - | chr1_1:70633164-70633183 | Msa0040470:three_prime_UTR | 40.0% | |
| TCAAGAAAGACTTTGGCTAG+TGG | + | chr1_1:70633447-70633466 | None:intergenic | 40.0% | |
| ! | ACCAACTTGTTTATCCAAGC+AGG | - | chr1_1:70633837-70633856 | Msa0040470:intron | 40.0% |
| ! | CCAACTTGTTTATCCAAGCA+GGG | - | chr1_1:70633838-70633857 | Msa0040470:intron | 40.0% |
| GAAAAGTGGGTATAGGGATT+AGG | + | chr1_1:70633912-70633931 | None:intergenic | 40.0% | |
| ! | GTGCTTCATGCTTGATGTTT+TGG | - | chr1_1:70634111-70634130 | Msa0040470:intron | 40.0% |
| !!! | CATGCTTGATGTTTTGGGAA+AGG | - | chr1_1:70634117-70634136 | Msa0040470:intron | 40.0% |
| !!! | ACCCTCTTTTTCAGTGCAAA+GGG | + | chr1_1:70634308-70634327 | None:intergenic | 40.0% |
| !!! | AACCCTCTTTTTCAGTGCAA+AGG | + | chr1_1:70634309-70634328 | None:intergenic | 40.0% |
| ! | GAAAAAGAGGGTTGATTCTG+AGG | - | chr1_1:70634316-70634335 | Msa0040470:intron | 40.0% |
| TGTGTGTGAGACTATATCTG+AGG | - | chr1_1:70634385-70634404 | Msa0040470:intron | 40.0% | |
| GTGTGTGAGACTATATCTGA+GGG | - | chr1_1:70634386-70634405 | Msa0040470:intron | 40.0% | |
| TTCCTCCTAAGTTTGGTATC+CGG | - | chr1_1:70634456-70634475 | Msa0040470:CDS | 40.0% | |
| !! | AATGGTGAACATTTGGCTCT+TGG | - | chr1_1:70634482-70634501 | Msa0040470:intron | 40.0% |
| !! | ATGGTGAACATTTGGCTCTT+GGG | - | chr1_1:70634483-70634502 | Msa0040470:intron | 40.0% |
| !!! | GCAACTTTTTTCTGCAATGC+AGG | - | chr1_1:70634702-70634721 | Msa0040470:intron | 40.0% |
| TGCTAGAATTCTGTGTCCTT+TGG | - | chr1_1:70634898-70634917 | Msa0040470:intron | 40.0% | |
| ! | ACCCAACCATGATTTGTAAC+AGG | + | chr1_1:70634970-70634989 | None:intergenic | 40.0% |
| TGTTACAAATCATGGTTGGG+TGG | - | chr1_1:70634969-70634988 | Msa0040470:intron | 40.0% | |
| TACATTCTCAAGAGTTCACG+AGG | - | chr1_1:70635281-70635300 | Msa0040470:intron | 40.0% | |
| ACTAGTTGGCGTATTATTCC+TGG | + | chr1_1:70635555-70635574 | None:intergenic | 40.0% | |
| CCATCAAATGAGATAAAGCC+CGG | + | chr1_1:70635725-70635744 | None:intergenic | 40.0% | |
| GTCAAAACATGAAATCTGGG+AGG | - | chr1_1:70635914-70635933 | Msa0040470:CDS | 40.0% | |
| TAGATCGAAATCAATGGCCA+AGG | - | chr1_1:70636082-70636101 | Msa0040470:CDS | 40.0% | |
| TGCATTCACTCACTACTATG+TGG | - | chr1_1:70636124-70636143 | Msa0040470:CDS | 40.0% | |
| ATTCACTCACTACTATGTGG+TGG | - | chr1_1:70636127-70636146 | Msa0040470:CDS | 40.0% | |
| ! | GAGAGTCTGAAATCTAGTGT+AGG | + | chr1_1:70636351-70636370 | None:intergenic | 40.0% |
| ATGTCATTGCAGATAGCTTG+AGG | - | chr1_1:70636400-70636419 | Msa0040470:intron | 40.0% | |
| GCAACATGCAGATAGTATTC+AGG | - | chr1_1:70636428-70636447 | Msa0040470:intron | 40.0% | |
| ! | GTATTCAGGTTCCAACAGAA+TGG | - | chr1_1:70636442-70636461 | Msa0040470:intron | 40.0% |
| !! | AATCAGCCCATTCTAAAACC+TGG | - | chr1_1:70636466-70636485 | Msa0040470:intron | 40.0% |
| GGTCCATAATATATCCTTCC+AGG | + | chr1_1:70636487-70636506 | None:intergenic | 40.0% | |
| ! | TTTTGAATTGGGACTTGGGA+TGG | - | chr1_1:70636651-70636670 | Msa0040470:intron | 40.0% |
| AAGACCACAAACCGTGTAAA+TGG | + | chr1_1:70636720-70636739 | None:intergenic | 40.0% | |
| GGTTATGGAGAAAGCAACTT+TGG | - | chr1_1:70636903-70636922 | Msa0040470:CDS | 40.0% | |
| ATGGAGAAAGCAACTTTGGA+AGG | - | chr1_1:70636907-70636926 | Msa0040470:CDS | 40.0% | |
| TGAAGATCCTAAACCTTTGC+TGG | - | chr1_1:70636958-70636977 | Msa0040470:exon | 40.0% | |
| GAAGATCCTAAACCTTTGCT+GGG | - | chr1_1:70636959-70636978 | Msa0040470:exon | 40.0% | |
| TTTCATCCCAGCAAAGGTTT+AGG | + | chr1_1:70636968-70636987 | None:intergenic | 40.0% | |
| AAACCTTTGCTGGGATGAAA+TGG | - | chr1_1:70636968-70636987 | Msa0040470:exon | 40.0% | |
| AATGTATACGCCAACTGAAG+CGG | + | chr1_1:70637020-70637039 | None:intergenic | 40.0% | |
| GTTTCTCAACGAGTAGATGA+TGG | - | chr1_1:70637052-70637071 | Msa0040470:intron | 40.0% | |
| CAGACATCATATCGGTAAAC+TGG | + | chr1_1:70637090-70637109 | None:intergenic | 40.0% | |
| ! | ATGTTGCTAACATGGCCTTT+TGG | + | chr1_1:70637187-70637206 | None:intergenic | 40.0% |
| ! | TTAGAGGCATGTTGCTAACA+TGG | + | chr1_1:70637195-70637214 | None:intergenic | 40.0% |
| GGCACAAAAAACATTGATGC+TGG | - | chr1_1:70637233-70637252 | Msa0040470:intron | 40.0% | |
| CAGTTACAGACCAATCAGAT+CGG | + | chr1_1:70637260-70637279 | None:intergenic | 40.0% | |
| GTCTGTAACTGTGCTATAAC+TGG | - | chr1_1:70637299-70637318 | Msa0040470:intron | 40.0% | |
| CTCTACTTTCTCTGTCTGTC+TGG | - | chr1_1:70633016-70633035 | Msa0040470:three_prime_UTR | 45.0% | |
| ! | GAACATCTGAGGTGTGTGAA+AGG | + | chr1_1:70633425-70633444 | None:intergenic | 45.0% |
| TTTGGCTAGTGGAACATCTG+AGG | + | chr1_1:70633436-70633455 | None:intergenic | 45.0% | |
| GTCTTTCTTGAAGCTCATCC+AGG | - | chr1_1:70633456-70633475 | Msa0040470:intron | 45.0% | |
| CCCTGCTTGGATAAACAAGT+TGG | + | chr1_1:70633841-70633860 | None:intergenic | 45.0% | |
| ! | GCTGGCAAATTTGGTGACAA+TGG | + | chr1_1:70634233-70634252 | None:intergenic | 45.0% |
| TGTCACCAAATTTGCCAGCT+TGG | - | chr1_1:70634234-70634253 | Msa0040470:intron | 45.0% | |
| AGTTGCCAAGCTGGCAAATT+TGG | + | chr1_1:70634242-70634261 | None:intergenic | 45.0% | |
| AAATTTGCCAGCTTGGCAAC+TGG | - | chr1_1:70634241-70634260 | Msa0040470:intron | 45.0% | |
| TGCCCTTTGCACTGAAAAAG+AGG | - | chr1_1:70634303-70634322 | Msa0040470:intron | 45.0% | |
| GCCCTTTGCACTGAAAAAGA+GGG | - | chr1_1:70634304-70634323 | Msa0040470:intron | 45.0% | |
| TCCTCCTAAGTTTGGTATCC+GGG | - | chr1_1:70634457-70634476 | Msa0040470:CDS | 45.0% | |
| TTTCCCCGGATACCAAACTT+AGG | + | chr1_1:70634464-70634483 | None:intergenic | 45.0% | |
| AAGTTTGGTATCCGGGGAAA+TGG | - | chr1_1:70634464-70634483 | Msa0040470:CDS | 45.0% | |
| CCAAATGTTCACCATTTCCC+CGG | + | chr1_1:70634478-70634497 | None:intergenic | 45.0% | |
| !! | TGGTGAACATTTGGCTCTTG+GGG | - | chr1_1:70634484-70634503 | Msa0040470:intron | 45.0% |
| ATGCAGGATTAGGAAGACTC+TGG | - | chr1_1:70634718-70634737 | Msa0040470:intron | 45.0% | |
| AACAGTTCTGTCACTGATGG+AGG | + | chr1_1:70634755-70634774 | None:intergenic | 45.0% | |
| AGCAACAGTTCTGTCACTGA+TGG | + | chr1_1:70634758-70634777 | None:intergenic | 45.0% | |
| TTTCGTTGTTATCCGCAAGG+TGG | - | chr1_1:70634823-70634842 | Msa0040470:CDS | 45.0% | |
| TTCGTTGTTATCCGCAAGGT+GGG | - | chr1_1:70634824-70634843 | Msa0040470:CDS | 45.0% | |
| GATAGAATAAGCCCACCTTG+CGG | + | chr1_1:70634838-70634857 | None:intergenic | 45.0% | |
| ! | CAAGAGTTCACGAGGTATCT+TGG | - | chr1_1:70635289-70635308 | Msa0040470:intron | 45.0% |
| ! | TAGGATTCGGTTTCCGATGA+TGG | - | chr1_1:70635456-70635475 | Msa0040470:intron | 45.0% |
| ! | AGGATTCGGTTTCCGATGAT+GGG | - | chr1_1:70635457-70635476 | Msa0040470:intron | 45.0% |
| GGAAGAACACCATCACTGAT+AGG | + | chr1_1:70635534-70635553 | None:intergenic | 45.0% | |
| ! | ATCAGTGATGGTGTTCTTCC+AGG | - | chr1_1:70635534-70635553 | Msa0040470:CDS | 45.0% |
| CGCCAACTAGTACTTGAGTA+TGG | - | chr1_1:70635564-70635583 | Msa0040470:CDS | 45.0% | |
| ! | CCGGGCTTTATCTCATTTGA+TGG | - | chr1_1:70635722-70635741 | Msa0040470:intron | 45.0% |
| ! | GCATGATTTGCACTTGTGCA+GGG | - | chr1_1:70635845-70635864 | Msa0040470:CDS | 45.0% |
| !! | AGCCCATTCTAAAACCTGGA+AGG | - | chr1_1:70636470-70636489 | Msa0040470:intron | 45.0% |
| AGTAAATGCAGGATGGACCA+GGG | - | chr1_1:70636583-70636602 | Msa0040470:intron | 45.0% | |
| CTGTCCATTTACACGGTTTG+TGG | - | chr1_1:70636713-70636732 | Msa0040470:intron | 45.0% | |
| TGTCCATTTCATCCCAGCAA+AGG | + | chr1_1:70636974-70636993 | None:intergenic | 45.0% | |
| ATGTATACGCCAACTGAAGC+GGG | + | chr1_1:70637019-70637038 | None:intergenic | 45.0% | |
| ! | TTGCTAACATGGCCTTTTGG+AGG | + | chr1_1:70637184-70637203 | None:intergenic | 45.0% |
| CCTCCTAAGTTTGGTATCCG+GGG | - | chr1_1:70634458-70634477 | Msa0040470:CDS | 50.0% | |
| CCGGGGAAATGGTGAACATT+TGG | - | chr1_1:70634475-70634494 | Msa0040470:CDS | 50.0% | |
| !! | GGTGAACATTTGGCTCTTGG+GGG | - | chr1_1:70634485-70634504 | Msa0040470:intron | 50.0% |
| !! | ATTTGGCTCTTGGGGGCTAT+GGG | - | chr1_1:70634492-70634511 | Msa0040470:intron | 50.0% |
| CAGACAGCTCCTATCAGTGA+TGG | - | chr1_1:70635522-70635541 | Msa0040470:CDS | 50.0% | |
| ! | GGCATGATTTGCACTTGTGC+AGG | - | chr1_1:70635844-70635863 | Msa0040470:CDS | 50.0% |
| ATGGAGCAACTTCTCGACAC+GGG | + | chr1_1:70635890-70635909 | None:intergenic | 50.0% | |
| GATGGAGCAACTTCTCGACA+CGG | + | chr1_1:70635891-70635910 | None:intergenic | 50.0% | |
| GTCGAGAAGTTGCTCCATCA+TGG | - | chr1_1:70635892-70635911 | Msa0040470:CDS | 50.0% | |
| TGGGCTGATTGCCATTCTGT+TGG | + | chr1_1:70636456-70636475 | None:intergenic | 50.0% | |
| GAGTAAATGCAGGATGGACC+AGG | - | chr1_1:70636582-70636601 | Msa0040470:intron | 50.0% | |
| TGTATACGCCAACTGAAGCG+GGG | + | chr1_1:70637018-70637037 | None:intergenic | 50.0% | |
| CTTCTTAGGCCACCTCCAAA+AGG | - | chr1_1:70637169-70637188 | Msa0040470:intron | 50.0% | |
| !! | CTAACATGGCCTTTTGGAGG+TGG | + | chr1_1:70637181-70637200 | None:intergenic | 50.0% |
| TGATGCTGGTCCGATCTGAT+TGG | - | chr1_1:70637247-70637266 | Msa0040470:intron | 50.0% | |
| TGCAATGCCAGTTGCCAAGC+TGG | + | chr1_1:70634251-70634270 | None:intergenic | 55.0% | |
| CCCCGGATACCAAACTTAGG+AGG | + | chr1_1:70634461-70634480 | None:intergenic | 55.0% | |
| !! | CATTTGGCTCTTGGGGGCTA+TGG | - | chr1_1:70634491-70634510 | Msa0040470:intron | 55.0% |
| AGACGGGGCTTTCCCATCAT+CGG | + | chr1_1:70635472-70635491 | None:intergenic | 55.0% | |
| GGGAAAGCCCCGTCTGATTA+TGG | - | chr1_1:70635477-70635496 | Msa0040470:intron | 55.0% | |
| AGAAGGGGCTCGTTCTTCTG+TGG | + | chr1_1:70635639-70635658 | None:intergenic | 55.0% | |
| TGCACTTGTGCAGGGTATGC+AGG | - | chr1_1:70635853-70635872 | Msa0040470:CDS | 55.0% | |
| TGCAGGGTATGCAGGAGTGA+AGG | - | chr1_1:70635861-70635880 | Msa0040470:CDS | 55.0% | |
| TGAAGCGGGGGAGAAAGAGA+AGG | + | chr1_1:70637005-70637024 | None:intergenic | 55.0% | |
| TCTTTCTCCCCCGCTTCAGT+TGG | - | chr1_1:70637007-70637026 | Msa0040470:five_prime_UTR | 55.0% | |
| GTATACGCCAACTGAAGCGG+GGG | + | chr1_1:70637017-70637036 | None:intergenic | 55.0% | |
| TGGCTCTTGGGGGCTATGGG+AGG | - | chr1_1:70634495-70634514 | Msa0040470:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_1 | gene | 70632989 | 70637373 | 70632989 | ID=Msa0040470;Name=Msa0040470 |
| chr1_1 | mRNA | 70632989 | 70637373 | 70632989 | ID=Msa0040470-mRNA-1;Parent=Msa0040470;Name=Msa0040470-mRNA-1;_AED=0.15;_eAED=0.15;_QI=110|1|1|1|0.87|0.77|9|413|364 |
| chr1_1 | exon | 70632989 | 70633464 | 70632989 | ID=Msa0040470-mRNA-1:exon:23306;Parent=Msa0040470-mRNA-1 |
| chr1_1 | exon | 70633736 | 70633768 | 70633736 | ID=Msa0040470-mRNA-1:exon:23305;Parent=Msa0040470-mRNA-1 |
| chr1_1 | exon | 70633841 | 70633950 | 70633841 | ID=Msa0040470-mRNA-1:exon:23304;Parent=Msa0040470-mRNA-1 |
| chr1_1 | exon | 70634411 | 70634496 | 70634411 | ID=Msa0040470-mRNA-1:exon:23303;Parent=Msa0040470-mRNA-1 |
| chr1_1 | exon | 70634782 | 70634903 | 70634782 | ID=Msa0040470-mRNA-1:exon:23302;Parent=Msa0040470-mRNA-1 |
| chr1_1 | exon | 70635521 | 70635638 | 70635521 | ID=Msa0040470-mRNA-1:exon:23301;Parent=Msa0040470-mRNA-1 |
| chr1_1 | exon | 70635810 | 70636281 | 70635810 | ID=Msa0040470-mRNA-1:exon:23300;Parent=Msa0040470-mRNA-1 |
| chr1_1 | exon | 70636885 | 70637036 | 70636885 | ID=Msa0040470-mRNA-1:exon:23299;Parent=Msa0040470-mRNA-1 |
| chr1_1 | exon | 70637325 | 70637373 | 70637325 | ID=Msa0040470-mRNA-1:exon:23298;Parent=Msa0040470-mRNA-1 |
| chr1_1 | five_prime_UTR | 70637325 | 70637373 | 70637325 | ID=Msa0040470-mRNA-1:five_prime_utr;Parent=Msa0040470-mRNA-1 |
| chr1_1 | five_prime_UTR | 70636976 | 70637036 | 70636976 | ID=Msa0040470-mRNA-1:five_prime_utr;Parent=Msa0040470-mRNA-1 |
| chr1_1 | CDS | 70636885 | 70636975 | 70636885 | ID=Msa0040470-mRNA-1:cds;Parent=Msa0040470-mRNA-1 |
| chr1_1 | CDS | 70635810 | 70636281 | 70635810 | ID=Msa0040470-mRNA-1:cds;Parent=Msa0040470-mRNA-1 |
| chr1_1 | CDS | 70635521 | 70635638 | 70635521 | ID=Msa0040470-mRNA-1:cds;Parent=Msa0040470-mRNA-1 |
| chr1_1 | CDS | 70634782 | 70634903 | 70634782 | ID=Msa0040470-mRNA-1:cds;Parent=Msa0040470-mRNA-1 |
| chr1_1 | CDS | 70634411 | 70634496 | 70634411 | ID=Msa0040470-mRNA-1:cds;Parent=Msa0040470-mRNA-1 |
| chr1_1 | CDS | 70633841 | 70633950 | 70633841 | ID=Msa0040470-mRNA-1:cds;Parent=Msa0040470-mRNA-1 |
| chr1_1 | CDS | 70633736 | 70633768 | 70633736 | ID=Msa0040470-mRNA-1:cds;Parent=Msa0040470-mRNA-1 |
| chr1_1 | CDS | 70633402 | 70633464 | 70633402 | ID=Msa0040470-mRNA-1:cds;Parent=Msa0040470-mRNA-1 |
| chr1_1 | three_prime_UTR | 70632989 | 70633401 | 70632989 | ID=Msa0040470-mRNA-1:three_prime_utr;Parent=Msa0040470-mRNA-1 |
| Gene Sequence |
| Protein sequence |
