AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0436270


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0436270 MtrunA17_Chr3g0143581 98.204 167 3 0 1 167 1 167 6.71e-121 345
Msa0436270 MtrunA17_Chr3g0143571 94.375 160 9 0 172 331 15 174 7.61e-103 299
Msa0436270 MtrunA17_Chr1g0213311 45.872 327 137 8 20 321 24 335 2.38e-90 276
Msa0436270 MtrunA17_Chr3g0079841 38.158 304 114 7 20 317 29 264 8.41e-52 172
Msa0436270 MtrunA17_Chr7g0214501 38.554 249 109 5 83 329 3 209 4.59e-49 166
Msa0436270 MtrunA17_Chr7g0214491 60.656 61 24 0 20 80 25 85 2.40e-19 82.0
Msa0436270 MtrunA17_Chr5g0445971 32.407 108 62 2 17 124 24 120 5.43e-11 60.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0436270 AT1G76110.1 63.636 308 104 5 18 322 25 327 2.06e-131 378
Msa0436270 AT1G04880.1 41.486 323 156 6 23 321 21 334 1.61e-78 247
Msa0436270 AT3G13350.1 40.476 294 152 4 25 317 34 305 7.47e-65 207
Msa0436270 AT1G55650.1 36.213 301 142 8 27 321 30 286 1.98e-53 179

Find 118 sgRNAs with CRISPR-Local

Find 172 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCAGGACTGACCAATCATTT+TGG 0.213880 3_2:+89710356 None:intergenic
TGAAGTTAGTTACATGAATT+TGG 0.218590 3_2:+89711764 None:intergenic
GCACTATAATTTACCATCTT+AGG 0.243959 3_2:+89711198 None:intergenic
AGACGATGATTCATGTCTTT+TGG 0.244218 3_2:-89710685 Msa0436270:CDS
TTAACGACCCTACTCTCTTT+TGG 0.246597 3_2:-89711821 Msa0436270:CDS
GCTTAGAATTCTATTATAAT+TGG 0.250974 3_2:-89710019 Msa0436270:three_prime_UTR
TTATATAGTGTCAGTGAAAT+TGG 0.257424 3_2:-89710628 Msa0436270:CDS
GTAAACTCCCTTTCTCTGTT+TGG 0.269610 3_2:+89710378 None:intergenic
TCCACTGGTCCGAGGTTTAC+AGG 0.277842 3_2:-89709960 Msa0436270:three_prime_UTR
AAGTTATAGCCACTCCTATT+TGG 0.286925 3_2:+89710441 None:intergenic
TTCAGAGCTGAGACTATTCC+AGG 0.293074 3_2:+89710338 None:intergenic
GTAAAAGTACAAAGCAATTA+AGG 0.293418 3_2:+89712145 None:intergenic
AGTTCACTTCTTCAAAGTTC+AGG 0.296129 3_2:-89711403 Msa0436270:CDS
TAAACTCCCTTTCTCTGTTT+GGG 0.301975 3_2:+89710379 None:intergenic
TTTCATGTGGCAGATTCTTT+TGG 0.302640 3_2:-89709891 Msa0436270:three_prime_UTR
CCAACTATCCAAAGCCAAAT+AGG 0.317522 3_2:-89710455 Msa0436270:CDS
TGCCAAAAGGGATAGATTTA+TGG 0.320764 3_2:+89710053 None:intergenic
TATTGAACAATAGCTAATTC+AGG 0.323525 3_2:+89711225 None:intergenic
GTCCATAAATCTATCCCTTT+TGG 0.330743 3_2:-89710055 Msa0436270:exon
CTATTTGGCTTTGGATAGTT+GGG 0.336021 3_2:+89710456 None:intergenic
CCTATTTGGCTTTGGATAGT+TGG 0.350904 3_2:+89710455 None:intergenic
TTACCAAAACATTGGCTTAA+GGG 0.366684 3_2:-89710153 Msa0436270:CDS
TTTACCAAAACATTGGCTTA+AGG 0.369159 3_2:-89710154 Msa0436270:CDS
TAGCCACTCCTATTTGGCTT+TGG 0.371071 3_2:+89710447 None:intergenic
TTGGGAAAAGGAACAATAGA+AGG 0.380812 3_2:-89710666 Msa0436270:CDS
TAGCGTCTCTTTGCTTAAAC+AGG 0.381504 3_2:-89709829 Msa0436270:three_prime_UTR
AGCGGTTTCTCCTTCATCAT+TGG 0.385924 3_2:-89710565 Msa0436270:CDS
AGGTTGTTGCAGAGAAGAAA+TGG 0.399101 3_2:-89711524 Msa0436270:CDS
GCATATATTGTTGTGGATAA+TGG 0.400222 3_2:-89709983 Msa0436270:three_prime_UTR
TCCTACCCAAGCGATGAGTT+TGG 0.411390 3_2:+89710505 None:intergenic
TGGTGCAAATTCCTAAGTTA+AGG 0.421658 3_2:+89712283 None:intergenic
GAGAAGAAATGGAGAGAAGT+AGG 0.422027 3_2:-89711513 Msa0436270:CDS
TGTCCCTTAAGCCAATGTTT+TGG 0.427681 3_2:+89710150 None:intergenic
TGTTCAATATTCACCTAAGA+TGG 0.427917 3_2:-89711211 Msa0436270:CDS
AGGGAGTTTACCAAAATGAT+TGG 0.428453 3_2:-89710366 Msa0436270:CDS
CTCTTCTTCTGCTGCCAAAA+GGG 0.435265 3_2:+89710041 None:intergenic
AACTCTACCCAAACAGAGAA+AGG 0.437948 3_2:-89710386 Msa0436270:CDS
TATATAGTGTCAGTGAAATT+GGG 0.442454 3_2:-89710627 Msa0436270:CDS
CCAAAATGATTGGTCAGTCC+TGG 0.444792 3_2:-89710356 Msa0436270:CDS
TTGCATAGGATTCCTGTGAT+TGG 0.455163 3_2:-89711682 Msa0436270:intron
GTTCACTTCTTCAAAGTTCA+GGG 0.455272 3_2:-89711402 Msa0436270:CDS
CAATCACCAAACTCATCGCT+TGG 0.458935 3_2:-89710511 Msa0436270:CDS
TGGGTTCAGAAGTTCTCAAA+GGG 0.460026 3_2:-89710608 Msa0436270:CDS
TGGATGGGATGGCTTCACTA+TGG 0.463016 3_2:+89712263 None:intergenic
GCTCTTCTTCTGCTGCCAAA+AGG 0.465124 3_2:+89710040 None:intergenic
TCGTCGCTTTCACTTTCTCA+TGG 0.469995 3_2:-89711790 Msa0436270:CDS
TTTGCCTTCGTCGTCGTCGC+CGG 0.479624 3_2:+89711881 None:intergenic
AGAGCAGAGTTGTGGATGGA+TGG 0.490160 3_2:+89712247 None:intergenic
TCTCAGCTCTGAAGAAAGAA+TGG 0.490573 3_2:-89710328 Msa0436270:intron
AAGGTACAAAAGAGAGTTGA+CGG 0.495764 3_2:-89710123 Msa0436270:CDS
CGATGAGTTTGGTGATTGAA+TGG 0.504304 3_2:+89710516 None:intergenic
GATTCCTGTGATTGGTGGTA+AGG 0.506284 3_2:-89711674 Msa0436270:CDS
TTGCAGATTTACCAAAACAT+TGG 0.511934 3_2:-89710161 Msa0436270:intron
ATAGAAGGAAAATTTGATTG+TGG 0.518312 3_2:-89710651 Msa0436270:CDS
AAACTCATCGCTTGGGTAGG+AGG 0.523054 3_2:-89710503 Msa0436270:CDS
TTCTCTACGTGGAAGTTACA+AGG 0.523185 3_2:-89711636 Msa0436270:CDS
TTGGCTTAAGGGACAAAGAA+AGG 0.525876 3_2:-89710142 Msa0436270:CDS
AGAGTGTCCCAAAAGAGAGT+AGG 0.527303 3_2:+89711813 None:intergenic
CAAGTGGGTACATACTAGAT+TGG 0.527598 3_2:+89709859 None:intergenic
ATTTGCCGCGTGGGAGGGAA+CGG 0.528414 3_2:+89712215 None:intergenic
GAGTGTCCCAAAAGAGAGTA+GGG 0.533581 3_2:+89711814 None:intergenic
AAGTACAAAGCAATTAAGGA+TGG 0.535270 3_2:+89712149 None:intergenic
TTTACATGCATATATTGTTG+TGG 0.536455 3_2:-89709990 Msa0436270:three_prime_UTR
AATCACCAAACTCATCGCTT+GGG 0.544065 3_2:-89710510 Msa0436270:CDS
CATAGGATTCCTGTGATTGG+TGG 0.550359 3_2:-89711679 Msa0436270:intron
AGTGCTGAATCTCATGATGA+AGG 0.550456 3_2:-89711180 Msa0436270:intron
GTCGTTGTGAGAGGCGAGTG+GGG 0.551529 3_2:+89711848 None:intergenic
CGAAATAGTAATACCTGGTG+AGG 0.553336 3_2:+89711365 None:intergenic
TTGGTGATTGAATGGCTCAA+TGG 0.554617 3_2:+89710524 None:intergenic
AAAAGAAGCGCTTGTAGTGG+TGG 0.559395 3_2:+89711470 None:intergenic
CCACTGGTCCGAGGTTTACA+GGG 0.560377 3_2:-89709959 Msa0436270:three_prime_UTR
AGATGATTTGCCGCGTGGGA+GGG 0.563653 3_2:+89712210 None:intergenic
CAATCTAGTATGTACCCACT+TGG 0.563932 3_2:-89709858 Msa0436270:three_prime_UTR
AAGATGATTTGCCGCGTGGG+AGG 0.565052 3_2:+89712209 None:intergenic
CGTCGTTGTGAGAGGCGAGT+GGG 0.567003 3_2:+89711847 None:intergenic
GAAATAGTAATACCTGGTGA+GGG 0.568622 3_2:+89711366 None:intergenic
ACTCTACCCAAACAGAGAAA+GGG 0.569820 3_2:-89710385 Msa0436270:CDS
TGTTGTGGATAATGGTCCAC+TGG 0.573310 3_2:-89709975 Msa0436270:three_prime_UTR
TACACAGCAGAGCAGAGTTG+TGG 0.575097 3_2:+89712239 None:intergenic
CCCTGTAAACCTCGGACCAG+TGG 0.575120 3_2:+89709959 None:intergenic
TTAATGTGTGTTTGATTGTG+AGG 0.580951 3_2:-89709741 Msa0436270:three_prime_UTR
ATGTGGCATTTAGTTTCATG+TGG 0.582340 3_2:-89709904 Msa0436270:three_prime_UTR
TTGGGTTCAGAAGTTCTCAA+AGG 0.586901 3_2:-89710609 Msa0436270:CDS
GGAGTACAAACAGAAAATGA+AGG 0.592924 3_2:-89710102 Msa0436270:CDS
AGTACAAAGCAATTAAGGAT+GGG 0.596058 3_2:+89712150 None:intergenic
GCTAATTCAGGTTTCCACGA+TGG 0.602804 3_2:+89711237 None:intergenic
AAGGAGAAGCGGTTATGAGA+AGG 0.604277 3_2:-89711617 Msa0436270:intron
AGCTCCTTACCACCAATCAC+AGG 0.612482 3_2:+89711670 None:intergenic
CAGCAGAGCAGAGTTGTGGA+TGG 0.612672 3_2:+89712243 None:intergenic
GTTAACGACGTCGTTGTGAG+AGG 0.614603 3_2:+89711839 None:intergenic
AAGAAGATGATTTGCCGCGT+GGG 0.614673 3_2:+89712206 None:intergenic
TCGTTGTGAGAGGCGAGTGG+GGG 0.615838 3_2:+89711849 None:intergenic
GAGCAGAGTTGTGGATGGAT+GGG 0.618143 3_2:+89712248 None:intergenic
ACGTCGTTGTGAGAGGCGAG+TGG 0.618608 3_2:+89711846 None:intergenic
GAGACGCTATGTGGACCAAG+TGG 0.619146 3_2:+89709843 None:intergenic
AGAGTTGTGGATGGATGGGA+TGG 0.623660 3_2:+89712252 None:intergenic
TTGTGCAGACAGAAGAACTC+GGG 0.623939 3_2:-89710079 Msa0436270:CDS
TACAAAAGAAGCGCTTGTAG+TGG 0.625201 3_2:+89711467 None:intergenic
TGTTGTGTAACCAATGATGA+AGG 0.625666 3_2:+89710555 None:intergenic
ATAAAAGATATAGTTTCATG+TGG 0.634865 3_2:-89709921 Msa0436270:three_prime_UTR
AACTCCGGCGACGACGACGA+AGG 0.636321 3_2:-89711885 Msa0436270:CDS
GACACTAGCCCTGTAAACCT+CGG 0.641420 3_2:+89709951 None:intergenic
TTAAGCAAAGAGACGCTATG+TGG 0.643680 3_2:+89709834 None:intergenic
TATCCAAAGCCAAATAGGAG+TGG 0.645627 3_2:-89710450 Msa0436270:CDS
AAAGAAGATGATTTGCCGCG+TGG 0.646388 3_2:+89712205 None:intergenic
GATAATGGTCCACTGGTCCG+AGG 0.648426 3_2:-89709968 Msa0436270:three_prime_UTR
TGATTTGCACGTTCTCTACG+TGG 0.652993 3_2:-89711647 Msa0436270:CDS
AAATAGTAATACCTGGTGAG+GGG 0.654247 3_2:+89711367 None:intergenic
GCGGTGAGAAGCAAGAACTC+CGG 0.655187 3_2:-89711900 Msa0436270:CDS
ACCAAACTCATCGCTTGGGT+AGG 0.660160 3_2:-89710506 Msa0436270:CDS
GTGGAAGTTACAAGGAGAAG+CGG 0.661449 3_2:-89711628 Msa0436270:CDS
AATAGTAATACCTGGTGAGG+GGG 0.665808 3_2:+89711368 None:intergenic
GTTGTGCAGACAGAAGAACT+CGG 0.678933 3_2:-89710080 Msa0436270:CDS
AGACGCTATGTGGACCAAGT+GGG 0.696910 3_2:+89709844 None:intergenic
TTTCTGGTAACAGTCCATCG+TGG 0.712333 3_2:-89711251 Msa0436270:CDS
GGGTTCAGAAGTTCTCAAAG+GGG 0.716935 3_2:-89710607 Msa0436270:CDS
TCATTGGTTACACAACACAA+CGG 0.736779 3_2:-89710549 Msa0436270:CDS
TGTAACCGTTCCCTCCCACG+CGG 0.737322 3_2:-89712220 Msa0436270:five_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TAAATAGAATAGTAAAAAAA+AGG + chr3_2:89709941-89709960 None:intergenic 10.0%
!! TATTTAATAATTCAAATTTC+AGG - chr3_2:89710461-89710480 Msa0436270:CDS 10.0%
!! TTATAAAAATTCATTTAGTT+CGG + chr3_2:89712243-89712262 None:intergenic 10.0%
!! AAATGAAATCACATTTATAA+TGG + chr3_2:89710304-89710323 None:intergenic 15.0%
!! CAAAAAATAGTATAAAAGAA+GGG + chr3_2:89710424-89710443 None:intergenic 15.0%
!! ACAAAAAATAGTATAAAAGA+AGG + chr3_2:89710425-89710444 None:intergenic 15.0%
!!! ATGAAACTATATCTTTTATA+AGG + chr3_2:89712083-89712102 None:intergenic 15.0%
!!! TATAAAAATTCATTTAGTTC+GGG + chr3_2:89712242-89712261 None:intergenic 15.0%
!! GAGAAAATGAAAATGAAATT+AGG + chr3_2:89709894-89709913 None:intergenic 20.0%
!! ACTATTAAAAATGTCATCAT+CGG - chr3_2:89710083-89710102 Msa0436270:CDS 20.0%
!! TAATGGTTATTTATCAAGTT+AGG - chr3_2:89710853-89710872 Msa0436270:intron 20.0%
!! AGATATTGAAATTACAGAAT+TGG - chr3_2:89710910-89710929 Msa0436270:intron 20.0%
!! AAGAAAGAATGGTAATTAAA+AGG - chr3_2:89711688-89711707 Msa0436270:intron 20.0%
!! AGAAAGAATGGTAATTAAAA+GGG - chr3_2:89711689-89711708 Msa0436270:intron 20.0%
!! GCTTAGAATTCTATTATAAT+TGG - chr3_2:89711986-89712005 Msa0436270:intron 20.0%
!! ATAAAAGATATAGTTTCATG+TGG - chr3_2:89712084-89712103 Msa0436270:intron 20.0%
!! GTAAAAGTACAAAGCAATTA+AGG + chr3_2:89709863-89709882 None:intergenic 25.0%
!! TTTTCATTTTCTCTCATCTT+AGG - chr3_2:89709901-89709920 Msa0436270:three_prime_UTR 25.0%
! AGCAGAATAAAAGATAGAAA+AGG + chr3_2:89709988-89710007 None:intergenic 25.0%
!!! AATAAATTTTCAAGCAGTTC+CGG - chr3_2:89710052-89710071 Msa0436270:exon 25.0%
! TGAAGTTAGTTACATGAATT+TGG + chr3_2:89710244-89710263 None:intergenic 25.0%
!!! TTATAATGGTACTTTTGGTT+TGG + chr3_2:89710290-89710309 None:intergenic 25.0%
!! CACATTTATAATGGTACTTT+TGG + chr3_2:89710295-89710314 None:intergenic 25.0%
!! AATGTGATTTCATTTTGCAT+AGG - chr3_2:89710309-89710328 Msa0436270:intron 25.0%
! TATTGAACAATAGCTAATTC+AGG + chr3_2:89710783-89710802 None:intergenic 25.0%
! TCATGATGAAGGTAATTTAA+TGG - chr3_2:89710836-89710855 Msa0436270:intron 25.0%
! GAAAGTAGTTTATGATGTTA+AGG - chr3_2:89711104-89711123 Msa0436270:intron 25.0%
!!! TCTGCATATTTAATTTGTCA+TGG - chr3_2:89711247-89711266 Msa0436270:CDS 25.0%
! ATAGAAGGAAAATTTGATTG+TGG - chr3_2:89711354-89711373 Msa0436270:intron 25.0%
! TTATATAGTGTCAGTGAAAT+TGG - chr3_2:89711377-89711396 Msa0436270:intron 25.0%
! TATATAGTGTCAGTGAAATT+GGG - chr3_2:89711378-89711397 Msa0436270:intron 25.0%
!!! ATTGTTGTTTATCTAGAATC+TGG - chr3_2:89711755-89711774 Msa0436270:intron 25.0%
! TTGGTAAATCTGCAATATTA+GGG + chr3_2:89711839-89711858 None:intergenic 25.0%
! TTTGGTAAATCTGCAATATT+AGG + chr3_2:89711840-89711859 None:intergenic 25.0%
! TTTACATGCATATATTGTTG+TGG - chr3_2:89712015-89712034 Msa0436270:intron 25.0%
AGTACAAAGCAATTAAGGAT+GGG + chr3_2:89709858-89709877 None:intergenic 30.0%
AAGTACAAAGCAATTAAGGA+TGG + chr3_2:89709859-89709878 None:intergenic 30.0%
ATTAAAAATGTCATCATCGG+CGG - chr3_2:89710086-89710105 Msa0436270:CDS 30.0%
AATAGCGAAATAGTAATACC+TGG + chr3_2:89710648-89710667 None:intergenic 30.0%
! TATATTGCAGATGCATTTTC+TGG - chr3_2:89710738-89710757 Msa0436270:intron 30.0%
TGTTCAATATTCACCTAAGA+TGG - chr3_2:89710794-89710813 Msa0436270:intron 30.0%
GCACTATAATTTACCATCTT+AGG + chr3_2:89710810-89710829 None:intergenic 30.0%
GAAATTACAGAATTGGAATC+AGG - chr3_2:89710917-89710936 Msa0436270:intron 30.0%
ACTCATTTGTGATTCTACTA+AGG - chr3_2:89711034-89711053 Msa0436270:intron 30.0%
GAAGAGAAGAAAAAGAAAGT+GGG - chr3_2:89711524-89711543 Msa0436270:CDS 30.0%
!!! GTGTGTTGTTTTATCCTAAT+TGG - chr3_2:89711725-89711744 Msa0436270:intron 30.0%
CAACAATGTAAAGACCAATT+AGG + chr3_2:89711742-89711761 None:intergenic 30.0%
TTGCAGATTTACCAAAACAT+TGG - chr3_2:89711844-89711863 Msa0436270:CDS 30.0%
!! TTTACCAAAACATTGGCTTA+AGG - chr3_2:89711851-89711870 Msa0436270:CDS 30.0%
!! TTACCAAAACATTGGCTTAA+GGG - chr3_2:89711852-89711871 Msa0436270:CDS 30.0%
GCATATATTGTTGTGGATAA+TGG - chr3_2:89712022-89712041 Msa0436270:intron 30.0%
TTAATGTGTGTTTGATTGTG+AGG - chr3_2:89712264-89712283 Msa0436270:five_prime_UTR 30.0%
! CATTTTCTCTCATCTTAGGA+AGG - chr3_2:89709905-89709924 Msa0436270:three_prime_UTR 35.0%
AGGTAGTACTAGTAAATGAG+AGG + chr3_2:89709968-89709987 None:intergenic 35.0%
!! GCTATTTTCTCAAACCACAA+CGG - chr3_2:89710005-89710024 Msa0436270:three_prime_UTR 35.0%
!! GAAGAATGTTTTTACCGTTG+TGG + chr3_2:89710022-89710041 None:intergenic 35.0%
! TTTTTAATAGTTCACGTCGC+CGG + chr3_2:89710074-89710093 None:intergenic 35.0%
AGTTCACTTCTTCAAAGTTC+AGG - chr3_2:89710602-89710621 Msa0436270:CDS 35.0%
GTTCACTTCTTCAAAGTTCA+GGG - chr3_2:89710603-89710622 Msa0436270:CDS 35.0%
AAATAGTAATACCTGGTGAG+GGG + chr3_2:89710641-89710660 None:intergenic 35.0%
GAAATAGTAATACCTGGTGA+GGG + chr3_2:89710642-89710661 None:intergenic 35.0%
! TAGAAGTAGAAGCATGATTG+TGG - chr3_2:89711164-89711183 Msa0436270:intron 35.0%
! AGACGATGATTCATGTCTTT+TGG - chr3_2:89711320-89711339 Msa0436270:intron 35.0%
! GACGATGATTCATGTCTTTT+GGG - chr3_2:89711321-89711340 Msa0436270:intron 35.0%
!! GATTCATGTCTTTTGGGAAA+AGG - chr3_2:89711327-89711346 Msa0436270:intron 35.0%
TTGGGAAAAGGAACAATAGA+AGG - chr3_2:89711339-89711358 Msa0436270:intron 35.0%
TGTTGTGTAACCAATGATGA+AGG + chr3_2:89711453-89711472 None:intergenic 35.0%
! TCATTGGTTACACAACACAA+CGG - chr3_2:89711456-89711475 Msa0436270:CDS 35.0%
GGAAGAGAAGAAAAAGAAAG+TGG - chr3_2:89711523-89711542 Msa0436270:CDS 35.0%
!! CTATTTGGCTTTGGATAGTT+GGG + chr3_2:89711552-89711571 None:intergenic 35.0%
AAGTTATAGCCACTCCTATT+TGG + chr3_2:89711567-89711586 None:intergenic 35.0%
TAAACTCCCTTTCTCTGTTT+GGG + chr3_2:89711629-89711648 None:intergenic 35.0%
AGGGAGTTTACCAAAATGAT+TGG - chr3_2:89711639-89711658 Msa0436270:CDS 35.0%
AAGGTACAAAAGAGAGTTGA+CGG - chr3_2:89711882-89711901 Msa0436270:CDS 35.0%
GGAGTACAAACAGAAAATGA+AGG - chr3_2:89711903-89711922 Msa0436270:CDS 35.0%
! GTCCATAAATCTATCCCTTT+TGG - chr3_2:89711950-89711969 Msa0436270:intron 35.0%
TGCCAAAAGGGATAGATTTA+TGG + chr3_2:89711955-89711974 None:intergenic 35.0%
! ATGTGGCATTTAGTTTCATG+TGG - chr3_2:89712101-89712120 Msa0436270:intron 35.0%
! TTTCATGTGGCAGATTCTTT+TGG - chr3_2:89712114-89712133 Msa0436270:intron 35.0%
! TTAACGACCCTACTCTCTTT+TGG - chr3_2:89710184-89710203 Msa0436270:intron 40.0%
! TAACGACCCTACTCTCTTTT+GGG - chr3_2:89710185-89710204 Msa0436270:intron 40.0%
TTGCATAGGATTCCTGTGAT+TGG - chr3_2:89710323-89710342 Msa0436270:intron 40.0%
TTCTCTACGTGGAAGTTACA+AGG - chr3_2:89710369-89710388 Msa0436270:CDS 40.0%
AGGTTGTTGCAGAGAAGAAA+TGG - chr3_2:89710481-89710500 Msa0436270:CDS 40.0%
GAGAAGAAATGGAGAGAAGT+AGG - chr3_2:89710492-89710511 Msa0436270:CDS 40.0%
!! TACAAAAGAAGCGCTTGTAG+TGG + chr3_2:89710541-89710560 None:intergenic 40.0%
AATAGTAATACCTGGTGAGG+GGG + chr3_2:89710640-89710659 None:intergenic 40.0%
CGAAATAGTAATACCTGGTG+AGG + chr3_2:89710643-89710662 None:intergenic 40.0%
! AGTGCTGAATCTCATGATGA+AGG - chr3_2:89710825-89710844 Msa0436270:intron 40.0%
! ATGATTGTGGACTCAAGTTG+AGG - chr3_2:89711177-89711196 Msa0436270:intron 40.0%
!! TGGACTCAAGTTGAGGATTT+AGG - chr3_2:89711184-89711203 Msa0436270:CDS 40.0%
TTGGGTTCAGAAGTTCTCAA+AGG - chr3_2:89711396-89711415 Msa0436270:CDS 40.0%
TGGGTTCAGAAGTTCTCAAA+GGG - chr3_2:89711397-89711416 Msa0436270:CDS 40.0%
GCTTTACCATCCAGAAAAAG+CGG - chr3_2:89711422-89711441 Msa0436270:CDS 40.0%
! TTGGTGATTGAATGGCTCAA+TGG + chr3_2:89711484-89711503 None:intergenic 40.0%
! CGATGAGTTTGGTGATTGAA+TGG + chr3_2:89711492-89711511 None:intergenic 40.0%
AATCACCAAACTCATCGCTT+GGG - chr3_2:89711495-89711514 Msa0436270:CDS 40.0%
!! CCTATTTGGCTTTGGATAGT+TGG + chr3_2:89711553-89711572 None:intergenic 40.0%
CCAACTATCCAAAGCCAAAT+AGG - chr3_2:89711550-89711569 Msa0436270:intron 40.0%
TATCCAAAGCCAAATAGGAG+TGG - chr3_2:89711555-89711574 Msa0436270:intron 40.0%
AACTCTACCCAAACAGAGAA+AGG - chr3_2:89711619-89711638 Msa0436270:CDS 40.0%
ACTCTACCCAAACAGAGAAA+GGG - chr3_2:89711620-89711639 Msa0436270:CDS 40.0%
GTAAACTCCCTTTCTCTGTT+TGG + chr3_2:89711630-89711649 None:intergenic 40.0%
!! TCTCAGCTCTGAAGAAAGAA+TGG - chr3_2:89711677-89711696 Msa0436270:CDS 40.0%
! TGTCCCTTAAGCCAATGTTT+TGG + chr3_2:89711858-89711877 None:intergenic 40.0%
TTGGCTTAAGGGACAAAGAA+AGG - chr3_2:89711863-89711882 Msa0436270:CDS 40.0%
CAAGTGGGTACATACTAGAT+TGG + chr3_2:89712149-89712168 None:intergenic 40.0%
CAATCTAGTATGTACCCACT+TGG - chr3_2:89712147-89712166 Msa0436270:intron 40.0%
TTAAGCAAAGAGACGCTATG+TGG + chr3_2:89712174-89712193 None:intergenic 40.0%
TAGCGTCTCTTTGCTTAAAC+AGG - chr3_2:89712176-89712195 Msa0436270:five_prime_UTR 40.0%
! AAGAAGATGATTTGCCGCGT+GGG + chr3_2:89709802-89709821 None:intergenic 45.0%
! AAAGAAGATGATTTGCCGCG+TGG + chr3_2:89709803-89709822 None:intergenic 45.0%
GAGTGTCCCAAAAGAGAGTA+GGG + chr3_2:89710194-89710213 None:intergenic 45.0%
! AGAGTGTCCCAAAAGAGAGT+AGG + chr3_2:89710195-89710214 None:intergenic 45.0%
! TCGTCGCTTTCACTTTCTCA+TGG - chr3_2:89710215-89710234 Msa0436270:intron 45.0%
CATAGGATTCCTGTGATTGG+TGG - chr3_2:89710326-89710345 Msa0436270:intron 45.0%
! GATTCCTGTGATTGGTGGTA+AGG - chr3_2:89710331-89710350 Msa0436270:CDS 45.0%
! TGATTTGCACGTTCTCTACG+TGG - chr3_2:89710358-89710377 Msa0436270:CDS 45.0%
GTGGAAGTTACAAGGAGAAG+CGG - chr3_2:89710377-89710396 Msa0436270:CDS 45.0%
AAGGAGAAGCGGTTATGAGA+AGG - chr3_2:89710388-89710407 Msa0436270:CDS 45.0%
!! AAAAGAAGCGCTTGTAGTGG+TGG + chr3_2:89710538-89710557 None:intergenic 45.0%
! TTTCTGGTAACAGTCCATCG+TGG - chr3_2:89710754-89710773 Msa0436270:intron 45.0%
! GCTAATTCAGGTTTCCACGA+TGG + chr3_2:89710771-89710790 None:intergenic 45.0%
GGGTTCAGAAGTTCTCAAAG+GGG - chr3_2:89711398-89711417 Msa0436270:CDS 45.0%
!!! GAGAAACCGCTTTTTCTGGA+TGG + chr3_2:89711431-89711450 None:intergenic 45.0%
!!! GAAGGAGAAACCGCTTTTTC+TGG + chr3_2:89711435-89711454 None:intergenic 45.0%
AGCGGTTTCTCCTTCATCAT+TGG - chr3_2:89711440-89711459 Msa0436270:CDS 45.0%
CAATCACCAAACTCATCGCT+TGG - chr3_2:89711494-89711513 Msa0436270:CDS 45.0%
! TAGCCACTCCTATTTGGCTT+TGG + chr3_2:89711561-89711580 None:intergenic 45.0%
! CCAGGACTGACCAATCATTT+TGG + chr3_2:89711652-89711671 None:intergenic 45.0%
! CCAAAATGATTGGTCAGTCC+TGG - chr3_2:89711649-89711668 Msa0436270:CDS 45.0%
TTCAGAGCTGAGACTATTCC+AGG + chr3_2:89711670-89711689 None:intergenic 45.0%
GTTGTGCAGACAGAAGAACT+CGG - chr3_2:89711925-89711944 Msa0436270:exon 45.0%
TTGTGCAGACAGAAGAACTC+GGG - chr3_2:89711926-89711945 Msa0436270:exon 45.0%
CTCTTCTTCTGCTGCCAAAA+GGG + chr3_2:89711967-89711986 None:intergenic 45.0%
! TGTTGTGGATAATGGTCCAC+TGG - chr3_2:89712030-89712049 Msa0436270:intron 45.0%
!! AAATAATTGAATTTAAATTA+AGG - chr3_2:89710881-89710900 Msa0436270:intron 5.0%
!! AATAATTGAATTTAAATTAA+GGG - chr3_2:89710882-89710901 Msa0436270:intron 5.0%
TGGATGGGATGGCTTCACTA+TGG + chr3_2:89709745-89709764 None:intergenic 50.0%
AGAGTTGTGGATGGATGGGA+TGG + chr3_2:89709756-89709775 None:intergenic 50.0%
GAGCAGAGTTGTGGATGGAT+GGG + chr3_2:89709760-89709779 None:intergenic 50.0%
AGAGCAGAGTTGTGGATGGA+TGG + chr3_2:89709761-89709780 None:intergenic 50.0%
TACACAGCAGAGCAGAGTTG+TGG + chr3_2:89709769-89709788 None:intergenic 50.0%
GTTAACGACGTCGTTGTGAG+AGG + chr3_2:89710169-89710188 None:intergenic 50.0%
AGCTCCTTACCACCAATCAC+AGG + chr3_2:89710338-89710357 None:intergenic 50.0%
ACCAAACTCATCGCTTGGGT+AGG - chr3_2:89711499-89711518 Msa0436270:CDS 50.0%
TCCTACCCAAGCGATGAGTT+TGG + chr3_2:89711503-89711522 None:intergenic 50.0%
AAACTCATCGCTTGGGTAGG+AGG - chr3_2:89711502-89711521 Msa0436270:CDS 50.0%
GCTCTTCTTCTGCTGCCAAA+AGG + chr3_2:89711968-89711987 None:intergenic 50.0%
GACACTAGCCCTGTAAACCT+CGG + chr3_2:89712057-89712076 None:intergenic 50.0%
AGACGCTATGTGGACCAAGT+GGG + chr3_2:89712164-89712183 None:intergenic 50.0%
CAGCAGAGCAGAGTTGTGGA+TGG + chr3_2:89709765-89709784 None:intergenic 55.0%
! AGATGATTTGCCGCGTGGGA+GGG + chr3_2:89709798-89709817 None:intergenic 55.0%
! AAGATGATTTGCCGCGTGGG+AGG + chr3_2:89709799-89709818 None:intergenic 55.0%
GCGGTGAGAAGCAAGAACTC+CGG - chr3_2:89710105-89710124 Msa0436270:CDS 55.0%
! CCTGGTGAGGGGGTGTAAAT+AGG + chr3_2:89710630-89710649 None:intergenic 55.0%
CCTATTTACACCCCCTCACC+AGG - chr3_2:89710627-89710646 Msa0436270:CDS 55.0%
! GATAATGGTCCACTGGTCCG+AGG - chr3_2:89712037-89712056 Msa0436270:intron 55.0%
TCCACTGGTCCGAGGTTTAC+AGG - chr3_2:89712045-89712064 Msa0436270:intron 55.0%
CCACTGGTCCGAGGTTTACA+GGG - chr3_2:89712046-89712065 Msa0436270:intron 55.0%
GAGACGCTATGTGGACCAAG+TGG + chr3_2:89712165-89712184 None:intergenic 55.0%
TGTAACCGTTCCCTCCCACG+CGG - chr3_2:89709785-89709804 Msa0436270:three_prime_UTR 60.0%
ATTTGCCGCGTGGGAGGGAA+CGG + chr3_2:89709793-89709812 None:intergenic 60.0%
TTTGCCTTCGTCGTCGTCGC+CGG + chr3_2:89710127-89710146 None:intergenic 60.0%
TCGTTGTGAGAGGCGAGTGG+GGG + chr3_2:89710159-89710178 None:intergenic 60.0%
GTCGTTGTGAGAGGCGAGTG+GGG + chr3_2:89710160-89710179 None:intergenic 60.0%
CGTCGTTGTGAGAGGCGAGT+GGG + chr3_2:89710161-89710180 None:intergenic 60.0%
ACGTCGTTGTGAGAGGCGAG+TGG + chr3_2:89710162-89710181 None:intergenic 60.0%
CCCTGTAAACCTCGGACCAG+TGG + chr3_2:89712049-89712068 None:intergenic 60.0%
AACTCCGGCGACGACGACGA+AGG - chr3_2:89710120-89710139 Msa0436270:CDS 65.0%
TGTGAGAGGCGAGTGGGGGA+GGG + chr3_2:89710155-89710174 None:intergenic 65.0%
TTGTGAGAGGCGAGTGGGGG+AGG + chr3_2:89710156-89710175 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr3_2 gene 89709725 89712302 89709725 ID=Msa0436270;Name=Msa0436270
chr3_2 mRNA 89709725 89712302 89709725 ID=Msa0436270-mRNA-1;Parent=Msa0436270;Name=Msa0436270-mRNA-1;_AED=0.12;_eAED=0.12;_QI=172|1|1|1|0.83|0.71|7|345|331
chr3_2 exon 89709725 89710177 89709725 ID=Msa0436270-mRNA-1:exon:26696;Parent=Msa0436270-mRNA-1
chr3_2 exon 89710329 89710714 89710329 ID=Msa0436270-mRNA-1:exon:26695;Parent=Msa0436270-mRNA-1
chr3_2 exon 89711181 89711279 89711181 ID=Msa0436270-mRNA-1:exon:26694;Parent=Msa0436270-mRNA-1
chr3_2 exon 89711379 89711544 89711379 ID=Msa0436270-mRNA-1:exon:26693;Parent=Msa0436270-mRNA-1
chr3_2 exon 89711618 89711696 89711618 ID=Msa0436270-mRNA-1:exon:26692;Parent=Msa0436270-mRNA-1
chr3_2 exon 89711777 89711958 89711777 ID=Msa0436270-mRNA-1:exon:26691;Parent=Msa0436270-mRNA-1
chr3_2 exon 89712155 89712302 89712155 ID=Msa0436270-mRNA-1:exon:26690;Parent=Msa0436270-mRNA-1
chr3_2 five_prime_UTR 89712155 89712302 89712155 ID=Msa0436270-mRNA-1:five_prime_utr;Parent=Msa0436270-mRNA-1
chr3_2 five_prime_UTR 89711935 89711958 89711935 ID=Msa0436270-mRNA-1:five_prime_utr;Parent=Msa0436270-mRNA-1
chr3_2 CDS 89711777 89711934 89711777 ID=Msa0436270-mRNA-1:cds;Parent=Msa0436270-mRNA-1
chr3_2 CDS 89711618 89711696 89711618 ID=Msa0436270-mRNA-1:cds;Parent=Msa0436270-mRNA-1
chr3_2 CDS 89711379 89711544 89711379 ID=Msa0436270-mRNA-1:cds;Parent=Msa0436270-mRNA-1
chr3_2 CDS 89711181 89711279 89711181 ID=Msa0436270-mRNA-1:cds;Parent=Msa0436270-mRNA-1
chr3_2 CDS 89710329 89710714 89710329 ID=Msa0436270-mRNA-1:cds;Parent=Msa0436270-mRNA-1
chr3_2 CDS 89710070 89710177 89710070 ID=Msa0436270-mRNA-1:cds;Parent=Msa0436270-mRNA-1
chr3_2 three_prime_UTR 89709725 89710069 89709725 ID=Msa0436270-mRNA-1:three_prime_utr;Parent=Msa0436270-mRNA-1
Gene Sequence

>Msa0436270

ATGTCATCATCGGCGGTGAGAAGCAAGAACTCCGGCGACGACGACGAAGGCAAACACTACCCTCCCCCACTCGCCTCTCACAACGACGTCGTTAACGACCCTACTCTCTTTTGGGACACTCTTCGTCGCTTTCACTTTCTCATGGCTACCAAATTCATGATTCCTGTGATTGGTGGTAAGGAGCTTGATTTGCACGTTCTCTACGTGGAAGTTACAAGGAGAAGCGGTTATGAGAAGGTTGTTGCAGAGAAGAAATGGAGAGAAGTAGGTAGTGTATTTAGATTCTCATCCACCACTACAAGCGCTTCTTTTGTACTAAGAAAACACTATTTGAATCTTCTTTATCATTACGAACAAGTTCACTTCTTCAAAGTTCAGGGTCCTATTTACACCCCCTCACCAGATGCATTTTCTGGTAACAGTCCATCGTGGAAACCTGAATTAGCTATTGTTCAATATTCACCTAAGATGGTAAATTATAGTGCTGAATCTCATGATGAAGTTCATGTAGACGATGATTCATGTCTTTTGGGAAAAGGAACAATAGAAGGAAAATTTGATTGTGGTTATATAGTGTCAGTGAAATTGGGTTCAGAAGTTCTCAAAGGGGTGCTTTACCATCCAGAAAAAGCGGTTTCTCCTTCATCATTGGTTACACAACACAACGGTGCCATTGAGCCATTCAATCACCAAACTCATCGCTTGGGTAGGAGGAAGAGAAGAAAAAGAAAGTGGGATCCCAACTATCCAAAGCCAAATAGGAGTGGCTATAACTTTTTCTTTGCTGAAAAGCATTACAAGCTCAAAGAACTCTACCCAAACAGAGAAAGGGAGTTTACCAAAATGATTGGTCAGTCCTGGAATAGTCTCAGCTCTGAAGAAAGAATGATTTACCAAAACATTGGCTTAAGGGACAAAGAAAGGTACAAAAGAGAGTTGACGGAGTACAAACAGAAAATGAAGGTTGTGCAGACAGAAGAACTCGGGCGTCCATAA

Protein sequence

>Msa0436270

MSSSAVRSKNSGDDDEGKHYPPPLASHNDVVNDPTLFWDTLRRFHFLMATKFMIPVIGGKELDLHVLYVEVTRRSGYEKVVAEKKWREVGSVFRFSSTTTSASFVLRKHYLNLLYHYEQVHFFKVQGPIYTPSPDAFSGNSPSWKPELAIVQYSPKMVNYSAESHDEVHVDDDSCLLGKGTIEGKFDCGYIVSVKLGSEVLKGVLYHPEKAVSPSSLVTQHNGAIEPFNHQTHRLGRRKRRKRKWDPNYPKPNRSGYNFFFAEKHYKLKELYPNREREFTKMIGQSWNSLSSEERMIYQNIGLRDKERYKRELTEYKQKMKVVQTEELGRP*