AlfalfaGEDB | Msa0446020

M. sativa cultivar zhongmu-4 / Msa0446020

KEGG: K15115
GO: -
PFAM: PF00153.30

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0446020	XP_003598987.1	98.324	358	6	0	1	358	1	358	0.0	726

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0446020	sp\|Q94AG6\|SAMC1_ARATH	33.028	327	164	6	16	337	41	317	1.78e-46	164

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0446020	G7IZA2	98.324	358	6	0	1	358	1	358	0.0	726

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0017510	Msa0446020	0.810478	1.129713e-50	-8.615850e-47
Msa0092990	Msa0446020	0.820150	7.986930e-53	-8.615850e-47
Msa0128020	Msa0446020	0.804277	2.333499e-49	-8.615850e-47
Msa0157100	Msa0446020	0.804937	1.699739e-49	-8.615850e-47
Msa0157290	Msa0446020	0.809395	1.933232e-50	-8.615850e-47
Msa0184960	Msa0446020	0.811147	8.096788e-51	-8.615850e-47
Msa0205850	Msa0446020	0.800410	1.460368e-48	-8.615850e-47
Msa0220580	Msa0446020	0.805109	1.564296e-49	-8.615850e-47
Msa0258760	Msa0446020	0.821612	3.679876e-53	-8.615850e-47
Msa0269450	Msa0446020	0.815033	1.137079e-51	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0446020	MtrunA17_Chr3g0086811	98.324	358	6	0	1	358	1	358	0.0	726
Msa0446020	MtrunA17_Chr1g0201361	31.595	326	172	5	12	336	34	309	1.73e-44	155
Msa0446020	MtrunA17_Chr8g0386871	32.609	322	174	6	15	332	306	588	1.80e-43	158
Msa0446020	MtrunA17_Chr8g0383321	32.039	309	160	5	29	337	53	311	5.34e-42	149
Msa0446020	MtrunA17_Chr5g0431531	29.674	337	196	7	9	338	22	324	1.67e-34	129
Msa0446020	MtrunA17_Chr1g0200171	29.338	317	166	10	24	333	521	786	1.29e-33	132
Msa0446020	MtrunA17_Chr6g0463351	33.559	295	151	8	42	328	81	338	1.34e-33	127
Msa0446020	MtrunA17_Chr3g0131501	27.545	334	199	9	6	332	184	481	1.78e-29	118
Msa0446020	MtrunA17_Chr2g0296061	28.704	324	181	7	31	326	18	319	2.07e-29	115
Msa0446020	MtrunA17_Chr2g0296061	29.082	196	124	6	128	321	17	199	2.58e-13	70.1

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0446020	AT1G74240.1	68.975	361	100	3	1	353	1	357	4.78e-169	476
Msa0446020	AT1G74240.2	71.246	313	86	2	41	353	1	309	1.50e-149	424
Msa0446020	AT4G39460.2	33.028	327	164	6	16	337	41	317	1.81e-47	164
Msa0446020	AT4G39460.1	33.028	327	164	6	16	337	41	317	1.81e-47	164
Msa0446020	AT4G39460.3	33.028	327	164	6	16	337	41	317	1.81e-47	164
Msa0446020	AT1G34065.1	32.595	316	161	6	21	334	73	338	1.40e-44	157
Msa0446020	AT1G34065.2	32.595	316	161	6	21	334	66	331	1.70e-44	156
Msa0446020	AT2G26360.1	29.870	308	170	6	24	329	111	374	2.20e-37	139
Msa0446020	AT4G11440.1	29.904	311	180	5	22	328	324	600	8.46e-36	137
Msa0446020	AT4G11440.2	29.904	311	180	5	22	328	324	600	8.46e-36	137

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Find 115 sgRNAs with CRISPR-Local

Find 345 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACTAGGCTGCAAGTTCA+GGG	0.510587	3_3:+21176715	Msa0446020:CDS
AAAGCAAATTCTTGTAGTTT+AGG	0.174028	3_3:-21172296	None:intergenic
AAATAAGAAATCTTTGGAGG+AGG	0.577333	3_3:+21177261	Msa0446020:CDS
AAATATATGATTATTATAAA+GGG	0.444285	3_3:+21175786	Msa0446020:CDS
AACATTGATCGAACCACCAT+TGG	0.469379	3_3:-21177221	None:intergenic
AAGCAAATTCTTGTAGTTTA+GGG	0.244065	3_3:-21172295	None:intergenic
AAGCAGCGCATGCAAGTTCA+AGG	0.461159	3_3:+21175701	Msa0446020:CDS
AAGGCATATTGCAGATGGTG+CGG	0.663444	3_3:+21174718	Msa0446020:CDS
AAGGCGTTAAGGGGATGTTT+AGG	0.289836	3_3:+21177104	Msa0446020:CDS
AAGTATGGAGGGAGTTTGTA+TGG	0.370405	3_3:+21174446	Msa0446020:intron

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
CTTGATCAATCATTCATCAA+TGG	+	chr3_3:21172325-21172344	Msa0446020:exon	30.0%
GTAATCACATATGTTTGTGT+CGG	-	chr3_3:21172820-21172839	None:intergenic	30.0%
TCCATCAATTTCAAAAATGC+AGG	-	chr3_3:21173014-21173033	None:intergenic	30.0%
AAGTAAACTAACATCCAACA+AGG	-	chr3_3:21173057-21173076	None:intergenic	30.0%
TACCATCAATTTCAAAATGC+AGG	-	chr3_3:21173373-21173392	None:intergenic	30.0%
GGTATGACATGGAAAAATAT+AGG	+	chr3_3:21173389-21173408	Msa0446020:intron	30.0%
ACTAGAAAGTTTCTTGATTG+AGG	+	chr3_3:21173636-21173655	Msa0446020:intron	30.0%
GTTCTTATGTGGCATAAAAT+TGG	-	chr3_3:21173663-21173682	None:intergenic	30.0%
TCATGTTTCAACATAATCCT+GGG	-	chr3_3:21173705-21173724	None:intergenic	30.0%
TTCATGTTTCAACATAATCC+TGG	-	chr3_3:21173706-21173725	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr3_3	gene	21172251	21177640	21172251	ID=Msa0446020;Name=Msa0446020
chr3_3	mRNA	21172251	21177640	21172251	ID=Msa0446020-mRNA-1;Parent=Msa0446020;Name=Msa0446020-mRNA-1;_AED=0.08;_eAED=0.08;_QI=93\|1\|1\|1\|1\|1\|9\|349\|358
chr3_3	exon	21172251	21172413	21172251	ID=Msa0446020-mRNA-1:exon:4424;Parent=Msa0446020-mRNA-1
chr3_3	exon	21174449	21174564	21174449	ID=Msa0446020-mRNA-1:exon:4425;Parent=Msa0446020-mRNA-1
chr3_3	exon	21174711	21174768	21174711	ID=Msa0446020-mRNA-1:exon:4426;Parent=Msa0446020-mRNA-1
chr3_3	exon	21175076	21175225	21175076	ID=Msa0446020-mRNA-1:exon:4427;Parent=Msa0446020-mRNA-1
chr3_3	exon	21175657	21175867	21175657	ID=Msa0446020-mRNA-1:exon:4428;Parent=Msa0446020-mRNA-1
chr3_3	exon	21176319	21176364	21176319	ID=Msa0446020-mRNA-1:exon:4429;Parent=Msa0446020-mRNA-1
chr3_3	exon	21176473	21176593	21176473	ID=Msa0446020-mRNA-1:exon:4430;Parent=Msa0446020-mRNA-1
chr3_3	exon	21176677	21176749	21176677	ID=Msa0446020-mRNA-1:exon:4431;Parent=Msa0446020-mRNA-1
chr3_3	exon	21177060	21177640	21177060	ID=Msa0446020-mRNA-1:exon:4432;Parent=Msa0446020-mRNA-1
chr3_3	five_prime_UTR	21172251	21172343	21172251	ID=Msa0446020-mRNA-1:five_prime_utr;Parent=Msa0446020-mRNA-1
chr3_3	CDS	21172344	21172413	21172344	ID=Msa0446020-mRNA-1:cds;Parent=Msa0446020-mRNA-1
chr3_3	CDS	21174449	21174564	21174449	ID=Msa0446020-mRNA-1:cds;Parent=Msa0446020-mRNA-1
chr3_3	CDS	21174711	21174768	21174711	ID=Msa0446020-mRNA-1:cds;Parent=Msa0446020-mRNA-1
chr3_3	CDS	21175076	21175225	21175076	ID=Msa0446020-mRNA-1:cds;Parent=Msa0446020-mRNA-1
chr3_3	CDS	21175657	21175867	21175657	ID=Msa0446020-mRNA-1:cds;Parent=Msa0446020-mRNA-1
chr3_3	CDS	21176319	21176364	21176319	ID=Msa0446020-mRNA-1:cds;Parent=Msa0446020-mRNA-1
chr3_3	CDS	21176473	21176593	21176473	ID=Msa0446020-mRNA-1:cds;Parent=Msa0446020-mRNA-1
chr3_3	CDS	21176677	21176749	21176677	ID=Msa0446020-mRNA-1:cds;Parent=Msa0446020-mRNA-1
chr3_3	CDS	21177060	21177291	21177060	ID=Msa0446020-mRNA-1:cds;Parent=Msa0446020-mRNA-1
chr3_3	three_prime_UTR	21177292	21177640	21177292	ID=Msa0446020-mRNA-1:three_prime_utr;Parent=Msa0446020-mRNA-1

Gene Sequence

>Msa0446020

ATGGCAGTTCAAAGCTCCATTTCCAGTAAACCACAAGCTCCGAACAACGTTTCTCACGATCATTTTTTCGTATGGAGGGAGTTTGTATGGGGAGCTGTTGCGGGTGCTTTTGGGGAAGGAATGATGCATCCGGTAGATACCATCAAAACACGAATACAAAGTCAAGCTATTCTAAATGGTGTTAAGAACCAGAAAGGCATATTGCAGATGGTGCGGTCTGTCTGGAAGGTTGATGGATTAAGAGGCTTTTACAGGGGTGTAGTACCTGGTGTTACTGGCTCTCTTGCGACTGGTGCAACATATTTTGGTGTCATAGAGTCAACTAAAAAGTGGATTGAGGATTCACATCCTAGCCTTGGTGGCCACTGGGCACATTTCATTGCTGGAGCTGTTGGAGATACACTTGGGTCTGTAGTATACGTTCCATGCGAAGTGATAAAGCAGCGCATGCAAGTTCAAGGCACAATTACATCCTGGAGTTCTACTGCAATGAAGAATGGCATTGCAATAAAACCTGGTGCAGAAATATATGATTATTATAAAGGGATGTTCCATGCAGGCAGCTCAATATGCAGAACACAGGGTTTAAAGGGTTTATATGCAGGATATTTGTCTACACTGGCAAGGGATGTACCATTTGCTGGCCTGATGGTTGTGTTCTATGAAGCTTTGAAAGATGCTACAGAGTACGGGAAGCGAAGATGGATATCTAATCCAAATTGGCACGTTAATAATTCCTTTGAGGGCCTGGTTTTGGGAGGATTAGCTGGGGGTCTCAGTGCATATCTCACCACTCCTTTGGACGTCGTCAAAACTAGGCTGCAAGTTCAGGGTTCAACTTTGAGGTATGATGGTTGGTTGGATGCAATTTACAACATATGGGCTAAGGAAGGCGTTAAGGGGATGTTTAGGGGTAGCGTCCCGAGAATTGCGTGGTACATTCCGGCTTCAGCGCTTACCTTCATGGCTGTGGAATTTCTCAGAGAAAATTTTAATGAAAGAGTGCCCAATGGTGGTTCGATCAATGTTGCTAGAGTATCGGTAGAAAATAAGAAATCTTTGGAGGAGGCTAGTTAA

Protein sequence

>Msa0446020

MAVQSSISSKPQAPNNVSHDHFFVWREFVWGAVAGAFGEGMMHPVDTIKTRIQSQAILNGVKNQKGILQMVRSVWKVDGLRGFYRGVVPGVTGSLATGATYFGVIESTKKWIEDSHPSLGGHWAHFIAGAVGDTLGSVVYVPCEVIKQRMQVQGTITSWSSTAMKNGIAIKPGAEIYDYYKGMFHAGSSICRTQGLKGLYAGYLSTLARDVPFAGLMVVFYEALKDATEYGKRRWISNPNWHVNNSFEGLVLGGLAGGLSAYLTTPLDVVKTRLQVQGSTLRYDGWLDAIYNIWAKEGVKGMFRGSVPRIAWYIPASALTFMAVEFLRENFNERVPNGGSINVARVSVENKKSLEEAS*