AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0398950

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0398950 MtrunA17_Chr3g0086811 98.603 358 5 0 1 358 1 358 0.0 726
Msa0398950 MtrunA17_Chr1g0201361 31.902 326 171 5 12 336 34 309 5.19e-45 157
Msa0398950 MtrunA17_Chr8g0386871 31.988 322 176 6 15 332 306 588 1.17e-41 153
Msa0398950 MtrunA17_Chr8g0383321 31.715 309 161 5 29 337 53 311 1.19e-41 148
Msa0398950 MtrunA17_Chr5g0431531 28.783 337 199 7 9 338 22 324 6.39e-35 130
Msa0398950 MtrunA17_Chr6g0463351 33.333 324 156 10 42 356 81 353 1.59e-34 130
Msa0398950 MtrunA17_Chr1g0200171 28.889 315 170 9 24 333 521 786 3.64e-33 130
Msa0398950 MtrunA17_Chr3g0131501 27.844 334 198 9 6 332 184 481 6.02e-30 119
Msa0398950 MtrunA17_Chr2g0296061 28.704 324 181 7 31 326 18 319 6.10e-30 117
Msa0398950 MtrunA17_Chr2g0296061 29.082 196 124 6 128 321 17 199 6.12e-13 68.9
Msa0398950 MtrunA17_Chr2g0296061 23.874 222 139 5 18 226 118 322 9.67e-11 62.4
Msa0398950 MtrunA17_Chr4g0067231 28.221 326 180 10 31 325 17 319 3.59e-28 112
Msa0398950 MtrunA17_Chr4g0067231 29.744 195 126 3 128 321 16 200 3.42e-14 72.8
Msa0398950 MtrunA17_Chr4g0067231 23.423 222 140 5 18 226 119 323 7.02e-11 62.8
Msa0398950 MtrunA17_Chr7g0269701 27.414 321 186 10 31 337 25 312 4.66e-28 111
Msa0398950 MtrunA17_Chr7g0269701 24.510 204 128 4 43 243 138 318 1.79e-12 67.4
Msa0398950 MtrunA17_Chr8g0366791 30.063 316 186 11 24 329 5 295 5.19e-28 111
Msa0398950 MtrunA17_Chr8g0366791 27.731 238 127 7 3 227 91 296 1.70e-14 73.2
Msa0398950 MtrunA17_Chr8g0385571 27.190 331 204 8 6 332 206 503 4.77e-27 111
Msa0398950 MtrunA17_Chr5g0411411 28.972 321 183 12 24 329 5 295 1.33e-26 107
Msa0398950 MtrunA17_Chr5g0411411 27.602 221 122 6 20 227 101 296 4.03e-12 66.2
Msa0398950 MtrunA17_Chr8g0372531 27.055 292 185 7 42 325 28 299 8.08e-26 105
Msa0398950 MtrunA17_Chr8g0372531 31.250 192 103 5 142 330 30 195 1.45e-15 76.6
Msa0398950 MtrunA17_Chr7g0240341 26.562 320 187 11 27 329 24 312 3.38e-25 103
Msa0398950 MtrunA17_Chr7g0240341 23.645 203 135 2 24 226 130 312 1.25e-13 70.9
Msa0398950 MtrunA17_Chr7g0240341 23.849 239 156 4 104 337 4 221 5.56e-12 65.9
Msa0398950 MtrunA17_Chr5g0396801 24.638 345 215 7 5 329 17 336 2.75e-24 102
Msa0398950 MtrunA17_Chr5g0396801 24.651 215 139 4 126 338 38 231 3.28e-11 63.9
Msa0398950 MtrunA17_Chr8g0347451 23.353 334 199 7 24 329 47 351 5.35e-24 101
Msa0398950 MtrunA17_Chr8g0347451 25.561 223 143 4 118 338 43 244 8.23e-12 65.9
Msa0398950 MtrunA17_Chr8g0347451 35.556 90 57 1 237 325 38 127 4.78e-11 63.5
Msa0398950 MtrunA17_Chr7g0252401 25.938 320 190 9 21 332 200 480 1.99e-23 100
Msa0398950 MtrunA17_Chr1g0195101 27.333 300 171 10 44 329 35 301 2.54e-23 98.6
Msa0398950 MtrunA17_Chr4g0063561 26.230 305 185 7 25 325 120 388 7.11e-23 98.6
Msa0398950 MtrunA17_Chr4g0063561 25.909 220 124 6 116 333 117 299 3.53e-11 63.9
Msa0398950 MtrunA17_Chr1g0149111 25.240 313 178 8 25 325 136 404 1.21e-21 95.5
Msa0398950 MtrunA17_Chr1g0149111 33.108 148 87 4 188 333 177 314 2.51e-13 70.9
Msa0398950 MtrunA17_Chr1g0149111 26.339 224 135 7 3 225 213 407 1.71e-12 68.2
Msa0398950 MtrunA17_Chr3g0135861 25.846 325 211 8 15 328 21 326 1.49e-21 94.4
Msa0398950 MtrunA17_Chr4g0028531 27.027 296 184 7 29 319 23 291 3.69e-21 92.4
Msa0398950 MtrunA17_Chr4g0046981 24.104 307 208 5 25 326 9 295 4.02e-21 92.4
Msa0398950 MtrunA17_Chr4g0046981 23.288 219 137 4 123 335 9 202 1.26e-12 67.8
Msa0398950 MtrunA17_Chr5g0423111 26.471 306 180 10 44 336 37 310 8.14e-21 92.4
Msa0398950 MtrunA17_Chr5g0423111 25.405 185 118 4 43 224 134 301 2.63e-11 64.3
Msa0398950 MtrunA17_Chr6g0488081 24.242 330 219 8 20 342 10 315 8.96e-21 91.7
Msa0398950 MtrunA17_Chr3g0137941 24.038 312 189 7 26 329 120 391 1.47e-20 92.0
Msa0398950 MtrunA17_Chr3g0137941 27.876 226 125 7 109 333 109 297 1.23e-13 71.6
Msa0398950 MtrunA17_Chr3g0137941 27.679 224 132 7 3 225 196 390 1.60e-13 71.2
Msa0398950 MtrunA17_Chr4g0004571 29.260 311 186 9 26 332 14 294 3.61e-19 86.7
Msa0398950 MtrunA17_Chr2g0293621 26.398 322 197 9 3 309 1 297 8.34e-19 86.3
Msa0398950 MtrunA17_Chr6g0455381 24.837 306 180 10 42 329 31 304 2.87e-18 84.3
Msa0398950 MtrunA17_Chr7g0219891 27.273 297 146 14 42 310 35 289 2.96e-17 81.6
Msa0398950 MtrunA17_Chr4g0008061 24.675 308 191 9 28 325 15 291 1.43e-16 79.3
Msa0398950 MtrunA17_Chr5g0436041 24.922 321 197 8 27 333 33 323 4.82e-16 78.2
Msa0398950 MtrunA17_Chr4g0000261 25.641 312 192 9 26 325 64 347 4.98e-16 78.6
Msa0398950 MtrunA17_Chr4g0006851 23.368 291 179 7 44 329 105 356 1.09e-15 77.4
Msa0398950 MtrunA17_Chr7g0242311 21.799 289 186 6 44 329 103 354 1.63e-15 77.0
Msa0398950 MtrunA17_Chr7g0241521 23.418 316 208 9 16 325 6 293 2.62e-15 75.9
Msa0398950 MtrunA17_Chr3g0103681 22.257 319 214 7 20 331 7 298 1.08e-14 73.9
Msa0398950 MtrunA17_Chr3g0135801 27.638 199 123 4 28 225 141 319 1.11e-14 73.9
Msa0398950 MtrunA17_Chr3g0135801 22.436 312 203 8 26 325 32 316 3.70e-11 63.5
Msa0398950 MtrunA17_Chr2g0331771 27.682 289 169 10 24 305 152 407 3.92e-14 73.2
Msa0398950 MtrunA17_Chr3g0133111 22.849 337 203 8 26 333 4 312 1.34e-13 70.9
Msa0398950 MtrunA17_Chr8g0382201 21.543 311 202 8 31 328 198 479 4.65e-13 70.1
Msa0398950 MtrunA17_Chr8g0343381 26.007 273 159 6 28 276 33 286 4.79e-13 69.3
Msa0398950 MtrunA17_Chr3g0136041 22.663 353 237 7 4 334 8 346 9.79e-13 68.6
Msa0398950 MtrunA17_Chr3g0115801 21.474 312 201 9 31 328 119 400 2.30e-12 67.8
Msa0398950 MtrunA17_Chr7g0275411 21.326 347 211 10 27 334 15 338 2.52e-12 67.4
Msa0398950 MtrunA17_Chr1g0196921 21.262 301 199 8 15 308 5 274 1.13e-11 65.1
Msa0398950 MtrunA17_Chr1g0196921 30.114 176 88 7 142 310 30 177 1.22e-11 64.7
Msa0398950 MtrunA17_Chr8g0385891 24.116 311 182 12 11 308 52 321 1.42e-11 65.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0398950 AT1G74240.1 69.252 361 99 3 1 353 1 357 2.09e-170 479
Msa0398950 AT1G74240.2 71.565 313 85 2 41 353 1 309 6.35e-151 428
Msa0398950 AT4G39460.2 32.722 327 165 6 16 337 41 317 4.01e-47 163
Msa0398950 AT4G39460.1 32.722 327 165 6 16 337 41 317 4.01e-47 163
Msa0398950 AT4G39460.3 32.722 327 165 6 16 337 41 317 4.01e-47 163
Msa0398950 AT1G34065.1 32.278 316 162 6 21 334 73 338 3.68e-44 155
Msa0398950 AT1G34065.2 32.278 316 162 6 21 334 66 331 4.06e-44 155
Msa0398950 AT2G26360.1 30.195 308 169 7 24 329 111 374 2.11e-37 139
Msa0398950 AT4G11440.1 29.904 311 180 5 22 328 324 600 6.96e-36 138
Msa0398950 AT4G11440.2 29.904 311 180 5 22 328 324 600 6.96e-36 138
Msa0398950 AT1G07030.1 29.080 337 193 9 7 332 19 320 4.96e-32 123
Msa0398950 AT2G30160.1 29.480 346 195 10 4 333 11 323 3.64e-31 120
Msa0398950 AT5G46800.2 30.599 317 190 9 25 332 5 300 1.45e-30 118
Msa0398950 AT5G46800.3 30.599 317 190 9 25 332 5 300 1.45e-30 118
Msa0398950 AT5G46800.1 30.599 317 190 9 25 332 5 300 1.45e-30 118
Msa0398950 AT2G35800.1 27.419 310 174 8 24 329 541 803 4.45e-30 122
Msa0398950 AT1G25380.1 29.012 324 186 10 44 354 37 329 8.61e-28 112
Msa0398950 AT1G25380.1 25.789 190 110 5 43 224 136 302 8.99e-13 69.3
Msa0398950 AT1G25380.2 29.012 324 186 10 44 354 37 329 8.61e-28 112
Msa0398950 AT1G25380.2 25.789 190 110 5 43 224 136 302 8.99e-13 69.3
Msa0398950 AT3G53940.1 28.402 338 193 12 16 337 61 365 2.08e-27 111
Msa0398950 AT3G53940.1 26.160 237 152 4 107 337 48 267 1.17e-13 72.0
Msa0398950 AT5G42130.1 30.405 296 160 7 42 328 132 390 1.98e-26 109
Msa0398950 AT5G48970.1 28.354 328 180 9 31 326 25 329 2.26e-26 107
Msa0398950 AT5G48970.1 26.108 203 137 4 128 329 24 214 1.86e-11 65.1
Msa0398950 AT2G47490.1 28.947 304 182 9 44 340 33 309 3.39e-26 107
Msa0398950 AT3G21390.1 28.916 332 184 9 31 332 22 331 5.78e-25 103
Msa0398950 AT3G21390.1 29.293 198 119 6 128 321 21 201 4.04e-12 67.0
Msa0398950 AT3G21390.2 28.916 332 184 9 31 332 44 353 9.49e-25 103
Msa0398950 AT3G21390.2 30.151 199 116 7 128 321 43 223 5.17e-12 66.6
Msa0398950 AT4G32400.1 26.774 310 185 6 25 329 111 383 1.47e-23 100
Msa0398950 AT4G32400.1 25.676 222 125 6 112 331 104 287 5.37e-11 63.9
Msa0398950 AT2G37890.1 26.269 335 194 11 10 329 34 330 2.85e-23 99.4
Msa0398950 AT2G37890.1 23.581 229 154 3 121 347 40 249 9.23e-11 62.8
Msa0398950 AT4G01100.1 23.235 340 192 9 24 329 38 342 6.05e-23 98.6
Msa0398950 AT4G01100.1 25.306 245 160 4 96 338 12 235 6.93e-13 69.3
Msa0398950 AT4G01100.2 23.563 348 195 9 24 329 38 356 4.09e-22 96.7
Msa0398950 AT5G66380.1 25.962 312 196 8 25 325 7 294 5.16e-22 95.1
Msa0398950 AT4G26180.1 25.826 333 218 10 26 352 19 328 1.05e-21 94.7
Msa0398950 AT2G33820.1 24.430 307 213 6 22 326 12 301 2.89e-21 93.2
Msa0398950 AT5G48970.2 26.786 280 163 8 67 326 1 258 4.85e-21 91.7
Msa0398950 AT5G01340.1 26.689 296 186 7 29 319 18 287 5.77e-21 92.4
Msa0398950 AT4G01100.3 23.438 320 176 9 44 329 8 292 6.16e-21 92.0
Msa0398950 AT4G01100.3 29.193 161 111 2 180 338 26 185 1.45e-12 68.2
Msa0398950 AT3G55640.1 24.348 345 217 10 7 337 17 331 1.80e-20 91.3
Msa0398950 AT3G55640.1 26.613 248 152 6 103 344 16 239 3.06e-14 73.2
Msa0398950 AT3G55640.4 24.348 345 217 10 7 337 17 331 1.80e-20 91.3
Msa0398950 AT3G55640.4 26.613 248 152 6 103 344 16 239 3.06e-14 73.2
Msa0398950 AT4G26180.2 26.923 286 182 9 26 305 19 283 2.05e-19 87.8
Msa0398950 AT4G26180.2 31.176 170 89 7 182 336 56 212 9.84e-13 68.6
Msa0398950 AT1G14560.1 26.531 294 188 6 44 328 43 317 3.36e-19 87.8
Msa0398950 AT1G14560.1 26.066 211 129 4 27 225 122 317 2.32e-13 70.5
Msa0398950 AT5G51050.1 25.478 314 185 11 28 332 223 496 8.26e-19 87.8
Msa0398950 AT5G07320.1 25.170 294 172 8 44 331 225 476 8.69e-19 87.8
Msa0398950 AT5G61810.2 22.727 330 210 7 6 331 44 332 1.18e-18 86.3
Msa0398950 AT3G54110.1 23.899 318 201 8 26 333 13 299 1.63e-18 85.5
Msa0398950 AT2G33820.3 23.810 315 213 7 22 326 12 309 1.89e-18 85.5
Msa0398950 AT5G61810.1 23.052 308 193 6 28 331 208 475 4.36e-18 85.9
Msa0398950 AT1G14560.2 27.306 271 169 6 44 305 43 294 5.65e-18 84.0
Msa0398950 AT1G14560.2 26.596 188 111 4 27 202 122 294 1.78e-11 64.7
Msa0398950 AT5G15640.1 25.862 290 159 9 42 309 42 297 1.09e-17 83.2
Msa0398950 AT5G15640.2 25.862 290 159 9 42 309 35 290 1.79e-17 82.4
Msa0398950 AT1G72820.1 26.062 353 215 10 2 329 5 336 3.72e-17 82.0
Msa0398950 AT1G72820.2 26.062 353 215 10 2 329 5 336 3.72e-17 82.0
Msa0398950 AT2G39970.1 25.974 308 196 9 41 327 21 317 7.85e-17 80.9
Msa0398950 AT4G03115.1 24.771 327 194 10 12 328 22 306 2.54e-16 79.3
Msa0398950 AT4G03115.3 24.771 327 194 10 12 328 54 338 3.36e-16 79.3
Msa0398950 AT3G20240.1 27.692 325 169 10 26 325 50 333 4.70e-16 79.0
Msa0398950 AT3G51870.1 22.591 301 189 7 34 329 97 358 7.20e-16 78.6
Msa0398950 AT1G79900.1 27.891 294 171 8 43 333 31 286 9.70e-16 77.4
Msa0398950 AT3G55640.2 26.210 248 153 5 103 344 16 239 6.83e-15 74.3
Msa0398950 AT3G55640.3 26.210 248 153 5 103 344 16 239 6.83e-15 74.3
Msa0398950 AT5G58970.1 23.270 318 196 9 28 329 16 301 1.26e-14 73.9
Msa0398950 AT5G01500.1 21.649 291 184 7 44 329 135 386 2.02e-14 74.3
Msa0398950 AT3G53940.2 26.160 237 152 4 107 337 48 267 5.31e-14 72.0
Msa0398950 AT3G53940.2 27.519 258 143 10 16 261 61 286 1.16e-12 68.2
Msa0398950 AT1G14560.3 25.943 212 130 4 27 226 24 220 6.33e-14 70.9
Msa0398950 AT1G14560.3 26.293 232 146 4 106 328 4 219 2.43e-13 69.3
Msa0398950 AT1G14140.1 22.680 291 188 7 27 308 15 277 7.52e-13 68.9
Msa0398950 AT5G64970.2 22.150 307 201 8 35 328 14 295 7.60e-13 68.9
Msa0398950 AT5G64970.1 22.403 308 201 8 34 328 137 419 7.91e-13 69.7
Msa0398950 AT2G33820.4 24.272 206 138 5 22 225 12 201 8.35e-13 68.2
Msa0398950 AT4G03115.5 23.963 217 136 4 14 226 45 236 1.24e-12 67.4
Msa0398950 AT4G03115.5 24.904 261 153 8 74 328 12 235 7.81e-11 62.0
Msa0398950 AT5G56450.1 26.087 207 127 7 28 231 145 328 2.01e-12 67.8
Msa0398950 AT4G03115.6 23.963 217 136 4 14 226 53 244 2.12e-12 67.0
Msa0398950 AT5G26200.1 25.312 320 202 11 26 329 37 335 2.13e-12 67.8
Msa0398950 AT3G48850.1 24.603 252 148 9 28 268 67 287 4.99e-12 67.0
Msa0398950 AT5G58970.2 25.000 220 130 6 126 330 16 215 4.68e-11 63.2

Find 111 sgRNAs with CRISPR-Local

Find 472 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GGCTTCAGCGCTTACCTTTA+TGG 0.118823 3_2:+21074924 Msa0398950:CDS
GGAGCTGTTGCGGGTGCTTT+TGG 0.179774 3_2:+21071124 Msa0398950:CDS
CCATCTGCAATATGCCTTTC+TGG 0.185244 3_2:-21071368 None:intergenic
AAAGCAAATTCTTGCGGTTT+AGG 0.188725 3_2:-21068166 None:intergenic
ACCAAGTTTGACTTAGTTAA+AGG 0.190040 3_2:-21075186 None:intergenic
CGGAATGTACCACGCAATTC+TGG 0.198697 3_2:-21074902 None:intergenic
GGTGTGGTACCTGGTGTTAC+TGG 0.238932 3_2:+21071675 Msa0398950:CDS
TCTATTGTATTTAGGTATAA+TGG 0.246393 3_2:+21074811 Msa0398950:intron
CAAAACTAGGCTGCAAGTTC+AGG 0.252977 3_2:+21074476 Msa0398950:CDS
GAAATATATGATTATTATAA+AGG 0.257154 3_2:+21072378 Msa0398950:CDS
ATGCAGAACACAGGGTTTAA+AGG 0.259624 3_2:+21072425 Msa0398950:CDS
AGTTATTGGAGAATATTATT+TGG 0.279272 3_2:+21075383 Msa0398950:three_prime_UTR
GAATTGTTAACATGCCAATT+TGG 0.287549 3_2:-21074284 None:intergenic
CATTGGGCACATTTCATTGC+TGG 0.294429 3_2:+21071783 Msa0398950:CDS
TGGATGCAATTTACAACATA+TGG 0.296124 3_2:+21074839 Msa0398950:CDS
CAAAGTCAAGCTATTCTAAA+TGG 0.302898 3_2:+21071190 Msa0398950:CDS
AAGCAAATTCTTGCGGTTTA+GGG 0.305560 3_2:-21068165 None:intergenic
TCTTCACATTATAGCCTCTA+TGG 0.316785 3_2:+21075268 Msa0398950:three_prime_UTR
AAGGCGTTAAGGGGATGTTT+AGG 0.318483 3_2:+21074869 Msa0398950:CDS
GTTCGGAGCTTGTGGTTTAC+TGG 0.321030 3_2:-21068236 None:intergenic
AGGCGTTAAGGGGATGTTTA+GGG 0.328822 3_2:+21074870 Msa0398950:CDS
AGCTTGTGGTTTACTGGAAA+TGG 0.332068 3_2:-21068230 None:intergenic
GATGGATATCTAATCCAAAT+TGG 0.334157 3_2:+21074270 Msa0398950:CDS
TTTGTATGGGGAGCTGTTGC+GGG 0.362454 3_2:+21071115 Msa0398950:CDS
GCAAGGGATGTACCATTTGC+TGG 0.366543 3_2:+21073043 Msa0398950:CDS
AAGTATGGAGGGAGTTTGTA+TGG 0.370405 3_2:+21071101 Msa0398950:intron
AGTAGAAAAGAAGAAATCTT+TGG 0.370427 3_2:+21075020 Msa0398950:CDS
GAGAAATTCCACAGCCATAA+AGG 0.372649 3_2:-21074938 None:intergenic
TGCAGAACACAGGGTTTAAA+GGG 0.376283 3_2:+21072426 Msa0398950:CDS
TTGAAAGATGCTACAGAATA+CGG 0.378120 3_2:+21074239 Msa0398950:CDS
ATGGGATAAGGAAGGCGTTA+AGG 0.383119 3_2:+21074858 Msa0398950:CDS
TGTACCATTTGCTGGCTTGA+TGG 0.403410 3_2:+21073051 Msa0398950:CDS
AAGATTCACATCCTAGCCTT+GGG 0.405042 3_2:+21071757 Msa0398950:CDS
TGGGATAAGGAAGGCGTTAA+GGG 0.412217 3_2:+21074859 Msa0398950:CDS
CAGAATTGCGTGGTACATTC+CGG 0.414580 3_2:+21074903 Msa0398950:CDS
TGCAGATGGTGCGGTCTGTC+TGG 0.418211 3_2:+21071382 Msa0398950:CDS
AGCGCTTACCTTTATGGCTG+TGG 0.421227 3_2:+21074930 Msa0398950:CDS
GGTTTAAAGGGTTTATATGC+AGG 0.422881 3_2:+21072438 Msa0398950:CDS
CATGTTAACAATTCCGTTGA+GGG 0.423579 3_2:+21074293 Msa0398950:CDS
TAACAATTCCGTTGAGGGAT+TGG 0.430001 3_2:+21074298 Msa0398950:CDS
TGCATATCTCACGACACCTT+TGG 0.432676 3_2:+21074446 Msa0398950:CDS
CTTGATCAATCATTCATCAA+TGG 0.433132 3_2:+21068195 Msa0398950:exon
AGCTATTCTAAATGGTGTTA+AGG 0.436394 3_2:+21071198 Msa0398950:CDS
TAACTAAGTCAAACTTGGTC+TGG 0.439083 3_2:+21075190 Msa0398950:three_prime_UTR
AAATATATGATTATTATAAA+GGG 0.444285 3_2:+21072379 Msa0398950:CDS
GTTTGTATGGGGAGCTGTTG+CGG 0.447613 3_2:+21071114 Msa0398950:CDS
CATTTCATTGCTGGAGCTGT+TGG 0.450661 3_2:+21071792 Msa0398950:CDS
CGCTGCTTTATCACTTCGCA+TGG 0.451002 3_2:-21072279 None:intergenic
GCTACTGGTGCAACATACTT+TGG 0.453775 3_2:+21071705 Msa0398950:CDS
GGAATGTACCACGCAATTCT+GGG 0.458861 3_2:-21074901 None:intergenic
AAGCAGCGCATGCAAGTTCA+AGG 0.461159 3_2:+21072294 Msa0398950:CDS
GTTACTGGCTCTCTTGCTAC+TGG 0.467878 3_2:+21071690 Msa0398950:CDS
AACATTGATCGAACCACCAT+TGG 0.469379 3_2:-21074986 None:intergenic
GAAGATTCACATCCTAGCCT+TGG 0.472072 3_2:+21071756 Msa0398950:CDS
CTTTGGATGTCGTCAAAACT+AGG 0.477244 3_2:+21074463 Msa0398950:CDS
CAGAATACGGGAAGAAAAGA+TGG 0.479917 3_2:+21074252 Msa0398950:CDS
ACCTTTAACTAAGTCAAACT+TGG 0.481020 3_2:+21075185 Msa0398950:three_prime_UTR
TGGGGAAGGAATGATGCATC+CGG 0.482566 3_2:+21071144 Msa0398950:CDS
GGATGCAATTTACAACATAT+GGG 0.498562 3_2:+21074840 Msa0398950:CDS
TGCATATTGAGCTGCCTGCA+TGG 0.498693 3_2:-21072407 None:intergenic
CTTCATTGCAGTAGAACTCC+AGG 0.501088 3_2:-21072328 None:intergenic
CGGTCTGTCTGGAAGGTCGA+TGG 0.506132 3_2:+21071393 Msa0398950:CDS
AATAATATTCTCCAATAACT+TGG 0.507864 3_2:-21075380 None:intergenic
AAAACTAGGCTGCAAGTTCA+GGG 0.510587 3_2:+21074477 Msa0398950:CDS
TGGAAGGTCGATGGATTAAG+AGG 0.515007 3_2:+21071402 Msa0398950:CDS
TAATCATATATTTCTGCACC+AGG 0.515860 3_2:-21072369 None:intergenic
AATACCATCAAGCCAGCAAA+TGG 0.515997 3_2:-21073055 None:intergenic
AATTTACAACATATGGGATA+AGG 0.517976 3_2:+21074846 Msa0398950:CDS
AGTATGGAGGGAGTTTGTAT+GGG 0.522756 3_2:+21071102 Msa0398950:intron
AGAAAAGAAGAAATCTTTGG+AGG 0.540442 3_2:+21075023 Msa0398950:CDS
ATTATGATATTGAAGTATGG+AGG 0.546460 3_2:+21071089 Msa0398950:intron
GAAACGTTGTTCGGAGCTTG+TGG 0.547396 3_2:-21068244 None:intergenic
GTTTAAAGGGTTTATATGCA+GGG 0.548432 3_2:+21072439 Msa0398950:CDS
TCCTAAAACCAATCCCTCAA+CGG 0.551879 3_2:-21074306 None:intergenic
ATTTAGGTATAATGGTTGGT+TGG 0.553150 3_2:+21074819 Msa0398950:intron
AGTTCTACTGCAATGAAGAA+TGG 0.554759 3_2:+21072333 Msa0398950:CDS
TGAAAGATGCTACAGAATAC+GGG 0.558238 3_2:+21074240 Msa0398950:CDS
ACATTGATCGAACCACCATT+GGG 0.560504 3_2:-21074985 None:intergenic
TGGTCGTGAGAAACGTTGTT+CGG 0.564169 3_2:-21068253 None:intergenic
CTGCAGATATTTGTCTACAC+TGG 0.569446 3_2:+21073021 Msa0398950:intron
AGGAGGCTAGTTAAAAGTTG+TGG 0.569974 3_2:+21075043 Msa0398950:exon
AAAGAAGAAATCTTTGGAGG+AGG 0.570380 3_2:+21075026 Msa0398950:CDS
TTGTATTTAGGTATAATGGT+TGG 0.571751 3_2:+21074815 Msa0398950:intron
ATAAAGGTAAGCGCTGAAGC+CGG 0.573286 3_2:-21074922 None:intergenic
AAACAGAAAGCAAATTCTTG+CGG 0.574248 3_2:-21068172 None:intergenic
TTCAAGGCACAATTACATCC+TGG 0.574829 3_2:+21072310 Msa0398950:CDS
CAGCTCAATATGCAGAACAC+AGG 0.577068 3_2:+21072416 Msa0398950:CDS
TATAAAGGGATGTTCCATGC+AGG 0.579831 3_2:+21072393 Msa0398950:CDS
CAGCAATGAAATGTGCCCAA+TGG 0.586726 3_2:-21071782 None:intergenic
ATTTGTCTGTAGAACCAGAA+AGG 0.587505 3_2:+21071354 Msa0398950:intron
GCATGTTAACAATTCCGTTG+AGG 0.590500 3_2:+21074292 Msa0398950:CDS
CCAGAAAGGCATATTGCAGA+TGG 0.592867 3_2:+21071368 Msa0398950:CDS
GATGGTGCGGTCTGTCTGGA+AGG 0.593657 3_2:+21071386 Msa0398950:CDS
GATATTTGTCTACACTGGCA+AGG 0.595879 3_2:+21073026 Msa0398950:intron
GGGATAAGGAAGGCGTTAAG+GGG 0.596351 3_2:+21074860 Msa0398950:CDS
GCAAGAGAGCCAGTAACACC+AGG 0.596810 3_2:-21071684 None:intergenic
AATGAAAGAGTGCCCAATGG+TGG 0.602193 3_2:+21074973 Msa0398950:CDS
TTATGATATTGAAGTATGGA+GGG 0.606052 3_2:+21071090 Msa0398950:intron
ATATTTGTCTACACTGGCAA+GGG 0.607867 3_2:+21073027 Msa0398950:CDS
AAGTTCAGGGTTCAACGTTG+AGG 0.609591 3_2:+21074490 Msa0398950:CDS
AATGGCATTGCAATAAAACC+TGG 0.616472 3_2:+21072351 Msa0398950:CDS
AGCTCAATATGCAGAACACA+GGG 0.628284 3_2:+21072417 Msa0398950:CDS
GAATGTACCACGCAATTCTG+GGG 0.628596 3_2:-21074900 None:intergenic
GTATGGAGGGAGTTTGTATG+GGG 0.630655 3_2:+21071103 Msa0398950:intron
TACAACATATGGGATAAGGA+AGG 0.639975 3_2:+21074850 Msa0398950:CDS
AGATTCACATCCTAGCCTTG+GGG 0.644114 3_2:+21071758 Msa0398950:CDS
TTTAATGAAAGAGTGCCCAA+TGG 0.649086 3_2:+21074970 Msa0398950:CDS
GGCGTTAAGGGGATGTTTAG+GGG 0.651818 3_2:+21074871 Msa0398950:CDS
AAGGCATATTGCAGATGGTG+CGG 0.663444 3_2:+21071373 Msa0398950:CDS
GCAGCGTCCCCAGAATTGCG+TGG 0.674749 3_2:+21074893 Msa0398950:CDS
GATTCACATCCTAGCCTTGG+GGG 0.702047 3_2:+21071759 Msa0398950:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TAAAATTAGAATTAACAATT+CGG - chr3_2:21068312-21068331 None:intergenic 10.0%
!!! AAAAATTAAAGCTTTTTTAT+TGG + chr3_2:21070576-21070595 Msa0398950:intron 10.0%
!! AAAATATAAGCAAAAAAATA+AGG - chr3_2:21072227-21072246 None:intergenic 10.0%
!! GAAATATATGATTATTATAA+AGG + chr3_2:21072378-21072397 Msa0398950:CDS 10.0%
!! ATGAAAAATAAATTATGAAA+AGG - chr3_2:21072603-21072622 None:intergenic 10.0%
!! AAGTGATTTATTAAAAAAAA+GGG - chr3_2:21073335-21073354 None:intergenic 10.0%
!! AAAGTGATTTATTAAAAAAA+AGG - chr3_2:21073336-21073355 None:intergenic 10.0%
!!! TTGTTATTATTTGAAATTGA+AGG + chr3_2:21068379-21068398 Msa0398950:intron 15.0%
!!! TCATTTTTTCAAATTTTTAC+TGG + chr3_2:21068604-21068623 Msa0398950:intron 15.0%
!!! AACATAAAAGTTAAGTTTTA+TGG - chr3_2:21069199-21069218 None:intergenic 15.0%
!! ATAATCAGATTGTAATATAA+AGG - chr3_2:21070080-21070099 None:intergenic 15.0%
!! ATAAAACTAATTTACAAAGA+TGG - chr3_2:21070472-21070491 None:intergenic 15.0%
!!! TAAACTTTTATACTAAAATC+TGG + chr3_2:21070642-21070661 Msa0398950:intron 15.0%
!! TGATTGATTATATATTGTTT+AGG + chr3_2:21071642-21071661 Msa0398950:intron 15.0%
!!! ATTTTTTTGCTTATATTTTC+AGG + chr3_2:21072228-21072247 Msa0398950:intron 15.0%
!! TATTAAATAAAATGAGAAAG+CGG - chr3_2:21072533-21072552 None:intergenic 15.0%
!!! ATATTCGTAAAATCATTTTA+AGG - chr3_2:21072676-21072695 None:intergenic 15.0%
!!! ATTATAGAATTTTCTTACTT+TGG + chr3_2:21072953-21072972 Msa0398950:intron 15.0%
!!! ATTATTAAATCACTTTTATG+AGG + chr3_2:21073138-21073157 Msa0398950:intron 15.0%
!!! TTATTAAATCACTTTTATGA+GGG + chr3_2:21073139-21073158 Msa0398950:intron 15.0%
!! GAACAAAAATAAATAATAGA+GGG - chr3_2:21074405-21074424 None:intergenic 15.0%
!! TGAACAAAAATAAATAATAG+AGG - chr3_2:21074406-21074425 None:intergenic 15.0%
!!! TTTTGTTCAAATAATTAAAC+AGG + chr3_2:21074417-21074436 Msa0398950:intron 15.0%
!!! ATAATTTTCTTATTACATCA+TGG - chr3_2:21075159-21075178 None:intergenic 15.0%
!!! ATTAATTAGTACCGAAAAAA+TGG - chr3_2:21068276-21068295 None:intergenic 20.0%
!! TTACAAATTTCTTCAAACAT+TGG - chr3_2:21068424-21068443 None:intergenic 20.0%
!!! GTTTTTCTCTTATAATTTGA+TGG + chr3_2:21068871-21068890 Msa0398950:intron 20.0%
!! TAGAATTGAGAGAAATATAT+AGG + chr3_2:21069333-21069352 Msa0398950:intron 20.0%
!! AGAATTGAGAGAAATATATA+GGG + chr3_2:21069334-21069353 Msa0398950:intron 20.0%
!! AAATATATAGGGAATATAGA+GGG + chr3_2:21069345-21069364 Msa0398950:intron 20.0%
!! ATATGTTTCAACATAATGTT+GGG - chr3_2:21069798-21069817 None:intergenic 20.0%
!! TATATGTTTCAACATAATGT+TGG - chr3_2:21069799-21069818 None:intergenic 20.0%
!!! TGAAACATATAAACTTTTGT+AGG + chr3_2:21069808-21069827 Msa0398950:intron 20.0%
!!! ATTTTGCATTTTGAAATTGA+TGG + chr3_2:21069976-21069995 Msa0398950:intron 20.0%
!! TTAATAGTAATACATTGTCT+CGG - chr3_2:21070051-21070070 None:intergenic 20.0%
!! TATATTACAATCTGATTATC+AGG + chr3_2:21070081-21070100 Msa0398950:intron 20.0%
!! ATATTACAATCTGATTATCA+GGG + chr3_2:21070082-21070101 Msa0398950:intron 20.0%
!!! TTTGTTTTCTAGTAATAATG+AGG - chr3_2:21071012-21071031 None:intergenic 20.0%
!! TGTATTATGATATTGAAGTA+TGG + chr3_2:21071086-21071105 Msa0398950:intron 20.0%
!!! GTTTTTAAAAGGAAAATAAG+CGG - chr3_2:21071464-21071483 None:intergenic 20.0%
!!! TATTTTCCTTTTAAAAACAC+TGG + chr3_2:21071466-21071485 Msa0398950:intron 20.0%
!! TGGACAAATTATATAAAAGA+GGG + chr3_2:21071486-21071505 Msa0398950:intron 20.0%
!!! CATCATTTTACACTTAAAAT+AGG - chr3_2:21071521-21071540 None:intergenic 20.0%
!! ACAATATATAATCAATCACA+AGG - chr3_2:21071640-21071659 None:intergenic 20.0%
!!! TAATTGAAGTATTCCATTTA+TGG + chr3_2:21072045-21072064 Msa0398950:intron 20.0%
!!! AATTGAAGTATTCCATTTAT+GGG + chr3_2:21072046-21072065 Msa0398950:intron 20.0%
!! ATTAAATAAAATGAGAAAGC+GGG - chr3_2:21072532-21072551 None:intergenic 20.0%
!!! ATAGCTCTAACTTATTTAAA+GGG - chr3_2:21072772-21072791 None:intergenic 20.0%
!! AACTGGTTATATAAGTAAAA+TGG - chr3_2:21072811-21072830 None:intergenic 20.0%
!!! TTTTTTTGAATGGAAAAAGT+TGG + chr3_2:21072905-21072924 Msa0398950:intron 20.0%
!!! TATTAAATCACTTTTATGAG+GGG + chr3_2:21073140-21073159 Msa0398950:intron 20.0%
!!! ATAACTCTTTAAAAGCTTTT+TGG + chr3_2:21073367-21073386 Msa0398950:intron 20.0%
!!! TAACTCTTTAAAAGCTTTTT+GGG + chr3_2:21073368-21073387 Msa0398950:intron 20.0%
!! TGTCTTAGCTAAATTTAAAA+TGG + chr3_2:21073613-21073632 Msa0398950:intron 20.0%
!!! GTCTTAGCTAAATTTAAAAT+GGG + chr3_2:21073614-21073633 Msa0398950:intron 20.0%
!! GCAATATCATATATATGAAT+TGG - chr3_2:21073983-21074002 None:intergenic 20.0%
!! ATAACATGTTAGAATAGTTA+TGG - chr3_2:21074529-21074548 None:intergenic 20.0%
!! ACTATTCTAACATGTTATTA+TGG + chr3_2:21074531-21074550 Msa0398950:intron 20.0%
!! ATTCATTGAAGAAAATTAAG+TGG - chr3_2:21074584-21074603 None:intergenic 20.0%
!!! ATTATGCAAAATTGATTTTC+TGG + chr3_2:21074637-21074656 Msa0398950:intron 20.0%
!! TTGTCATTAAAAACATGATA+AGG - chr3_2:21074719-21074738 None:intergenic 20.0%
!!! TCATGTTTTTAATGACAAAA+CGG + chr3_2:21074721-21074740 Msa0398950:intron 20.0%
!! TTGCTTTATCTATTGTATTT+AGG + chr3_2:21074803-21074822 Msa0398950:intron 20.0%
!! TCTATTGTATTTAGGTATAA+TGG + chr3_2:21074811-21074830 Msa0398950:intron 20.0%
!! ATCTTTGTAAAAATCAAGAT+GGG - chr3_2:21075085-21075104 None:intergenic 20.0%
!!! ATCTTGATTTTTACAAAGAT+GGG + chr3_2:21075085-21075104 Msa0398950:three_prime_UTR 20.0%
!! AATAATATTCTCCAATAACT+TGG - chr3_2:21075383-21075402 None:intergenic 20.0%
!!! ATTTAATTTTCCCAATCTTG+TGG + chr3_2:21068493-21068512 Msa0398950:intron 25.0%
!!! TTTAATTTTCCCAATCTTGT+GGG + chr3_2:21068494-21068513 Msa0398950:intron 25.0%
! ATTGATGAATTCTTGAATCA+CGG + chr3_2:21068532-21068551 Msa0398950:intron 25.0%
!! TTTCAAATTTTTACTGGTGT+TGG + chr3_2:21068610-21068629 Msa0398950:intron 25.0%
! TCAAAAATGCAGGTAAATTT+GGG - chr3_2:21068762-21068781 None:intergenic 25.0%
! TTCAAAAATGCAGGTAAATT+TGG - chr3_2:21068763-21068782 None:intergenic 25.0%
! ATAAGGTCTATATTTCTTCA+TGG - chr3_2:21068798-21068817 None:intergenic 25.0%
! TGAAGAAATATAGACCTTAT+TGG + chr3_2:21068798-21068817 Msa0398950:intron 25.0%
! TTCTCTTATAATTTGATGGA+AGG + chr3_2:21068875-21068894 Msa0398950:intron 25.0%
!! TTCAAATTTTTATGAGTGTC+TGG + chr3_2:21068970-21068989 Msa0398950:intron 25.0%
! ATCAATTTCAAAATGCATGT+AGG - chr3_2:21069106-21069125 None:intergenic 25.0%
!!! TACATGCATTTTGAAATTGA+TGG + chr3_2:21069105-21069124 Msa0398950:intron 25.0%
! GAAATATATAGGGAATATAG+AGG + chr3_2:21069344-21069363 Msa0398950:intron 25.0%
! AATATCTCTGTTTATATGCT+TGG - chr3_2:21069383-21069402 None:intergenic 25.0%
! CATATAAACAGAGATATTAG+AGG + chr3_2:21069385-21069404 Msa0398950:intron 25.0%
!!! TTTTTCTCTGTTTTATTGCT+TGG - chr3_2:21069424-21069443 None:intergenic 25.0%
! AATAAAACAGAGAAAAACAG+AGG + chr3_2:21069427-21069446 Msa0398950:intron 25.0%
!!! TGATTATCAGGGTATTTTTT+GGG + chr3_2:21070093-21070112 Msa0398950:intron 25.0%
!! TTTGAAGAATTTTGCAAACT+TGG + chr3_2:21070273-21070292 Msa0398950:intron 25.0%
!! TTGAAGAATTTTGCAAACTT+GGG + chr3_2:21070274-21070293 Msa0398950:intron 25.0%
! TAAATCAAACATACAACTCT+GGG - chr3_2:21070324-21070343 None:intergenic 25.0%
! ATAAATCAAACATACAACTC+TGG - chr3_2:21070325-21070344 None:intergenic 25.0%
!!! TGATTTATTTTTCCCAATGT+TGG + chr3_2:21070337-21070356 Msa0398950:intron 25.0%
!! GCAAAATAGTATATTTTCAG+AGG - chr3_2:21070503-21070522 None:intergenic 25.0%
!!! TGACTGCATTTTAAAATTGA+TGG + chr3_2:21070541-21070560 Msa0398950:intron 25.0%
!! AAAATTGATGGTATATGACA+TGG + chr3_2:21070553-21070572 Msa0398950:intron 25.0%
! TATACTAAAATCTGGTTACT+AGG + chr3_2:21070650-21070669 Msa0398950:intron 25.0%
! ATACTAAAATCTGGTTACTA+GGG + chr3_2:21070651-21070670 Msa0398950:intron 25.0%
! TACAACCTTACAAGTAATTT+AGG + chr3_2:21070741-21070760 Msa0398950:intron 25.0%
! GAGTGTGAAAAAAATATAGA+AGG - chr3_2:21070767-21070786 None:intergenic 25.0%
!! TAGGTACTGTATAATGTTAA+GGG - chr3_2:21070797-21070816 None:intergenic 25.0%
!! ATAGGTACTGTATAATGTTA+AGG - chr3_2:21070798-21070817 None:intergenic 25.0%
!! AATCTGAAAATTTGACTTAC+CGG + chr3_2:21070883-21070902 Msa0398950:intron 25.0%
!! CTTTAAGAAAGACAAAACAA+TGG - chr3_2:21071044-21071063 None:intergenic 25.0%
! ATTATGATATTGAAGTATGG+AGG + chr3_2:21071089-21071108 Msa0398950:intron 25.0%
! TTATGATATTGAAGTATGGA+GGG + chr3_2:21071090-21071109 Msa0398950:intron 25.0%
! TCACAGACTAATTCATTTAT+AGG - chr3_2:21071235-21071254 None:intergenic 25.0%
!! TAAAGCTTTTCTCTTTTGTT+GGG + chr3_2:21071325-21071344 Msa0398950:intron 25.0%
!!! ATTTGTCCAGTGTTTTTAAA+AGG - chr3_2:21071475-21071494 None:intergenic 25.0%
! CTGGACAAATTATATAAAAG+AGG + chr3_2:21071485-21071504 Msa0398950:intron 25.0%
!! TATATTGTTTAGGCTTTTAC+AGG + chr3_2:21071652-21071671 Msa0398950:intron 25.0%
!! ATATTGTTTAGGCTTTTACA+GGG + chr3_2:21071653-21071672 Msa0398950:intron 25.0%
! ACTTCAATTATTACTTACTG+AGG - chr3_2:21072035-21072054 None:intergenic 25.0%
! AATAAACCTTCAAATTTGCA+CGG - chr3_2:21072148-21072167 None:intergenic 25.0%
!! GCTTTTTATGCACAATAAAA+TGG - chr3_2:21072195-21072214 None:intergenic 25.0%
!!! CATAGCTCTAACTTATTTAA+AGG - chr3_2:21072773-21072792 None:intergenic 25.0%
! ATAGTATCACATAATTCAAC+TGG - chr3_2:21072828-21072847 None:intergenic 25.0%
!! AGCTAAATTTAAAATGGGTT+AGG + chr3_2:21073619-21073638 Msa0398950:intron 25.0%
!! TTCAAGTTAAAGTTTAGTCT+AGG + chr3_2:21073708-21073727 Msa0398950:intron 25.0%
! TCAAGTTAAAGTTTAGTCTA+GGG + chr3_2:21073709-21073728 Msa0398950:intron 25.0%
! ATATTAAATGCTTAAGCAAG+TGG - chr3_2:21073834-21073853 None:intergenic 25.0%
!!! CCTTGGTTTTTAACATAAAA+TGG - chr3_2:21073886-21073905 None:intergenic 25.0%
!! CCATTTTATGTTAAAAACCA+AGG + chr3_2:21073883-21073902 Msa0398950:intron 25.0%
! ATTATGGTATAAATGTGTAC+CGG + chr3_2:21074547-21074566 Msa0398950:intron 25.0%
!!! TGATTTTCTGGTGTATATTA+TGG + chr3_2:21074649-21074668 Msa0398950:intron 25.0%
!!! CATGTTTTTAATGACAAAAC+GGG + chr3_2:21074722-21074741 Msa0398950:intron 25.0%
!!! TTTGGATTGTCTTGTTTTTA+TGG + chr3_2:21074757-21074776 Msa0398950:intron 25.0%
!! ATGGACTAAAACTAAATTGA+TGG + chr3_2:21074776-21074795 Msa0398950:intron 25.0%
! TTGTATTTAGGTATAATGGT+TGG + chr3_2:21074815-21074834 Msa0398950:intron 25.0%
! AATTTACAACATATGGGATA+AGG + chr3_2:21074846-21074865 Msa0398950:CDS 25.0%
! AGTAGAAAAGAAGAAATCTT+TGG + chr3_2:21075020-21075039 Msa0398950:CDS 25.0%
! CATCTTTGTAAAAATCAAGA+TGG - chr3_2:21075086-21075105 None:intergenic 25.0%
!! CATCTTGATTTTTACAAAGA+TGG + chr3_2:21075084-21075103 Msa0398950:three_prime_UTR 25.0%
! TAAACTGAACGATCAAAAAT+GGG - chr3_2:21075216-21075235 None:intergenic 25.0%
! TTAAACTGAACGATCAAAAA+TGG - chr3_2:21075217-21075236 None:intergenic 25.0%
AAACAGAAAGCAAATTCTTG+CGG - chr3_2:21068175-21068194 None:intergenic 30.0%
CTTGATCAATCATTCATCAA+TGG + chr3_2:21068195-21068214 Msa0398950:exon 30.0%
!!! ACCTGCATTTTTGAAATTGA+TGG + chr3_2:21068768-21068787 Msa0398950:intron 30.0%
TCCATCAATTTCAAAAATGC+AGG - chr3_2:21068772-21068791 None:intergenic 30.0%
!! GTGAAATAGTGGATACTTAT+TGG - chr3_2:21069067-21069086 None:intergenic 30.0%
TCAAAATGCATGTAGGAAAA+TGG - chr3_2:21069099-21069118 None:intergenic 30.0%
! TTGAAATTGATGGTATCACA+TGG + chr3_2:21069115-21069134 Msa0398950:intron 30.0%
AGATATTAGAGGAAAAACAG+AGG + chr3_2:21069396-21069415 Msa0398950:intron 30.0%
! GTTACGATTTTATGTCTAGA+TGG + chr3_2:21069692-21069711 Msa0398950:intron 30.0%
AACTTTATGCTGCATAAGAA+CGG + chr3_2:21069755-21069774 Msa0398950:intron 30.0%
! TTGAAATTGATGGTATGACA+TGG + chr3_2:21069986-21070005 Msa0398950:intron 30.0%
GGTATGACATGGAAAAATAA+AGG + chr3_2:21069997-21070016 Msa0398950:intron 30.0%
!!! CTGATTATCAGGGTATTTTT+TGG + chr3_2:21070092-21070111 Msa0398950:intron 30.0%
!!! GATTATCAGGGTATTTTTTG+GGG + chr3_2:21070094-21070113 Msa0398950:intron 30.0%
!! TTTATTTTTCCCAATGTTGG+CGG + chr3_2:21070340-21070359 Msa0398950:intron 30.0%
CGTCATTAGCAATTAGTATA+AGG + chr3_2:21070415-21070434 Msa0398950:intron 30.0%
! CCAGTTTTGCAAAACAAATA+CGG - chr3_2:21070951-21070970 None:intergenic 30.0%
AGTAATAATGAGGCTTAGTT+AGG - chr3_2:21071002-21071021 None:intergenic 30.0%
CAAAGTCAAGCTATTCTAAA+TGG + chr3_2:21071190-21071209 Msa0398950:CDS 30.0%
! AGCTATTCTAAATGGTGTTA+AGG + chr3_2:21071198-21071217 Msa0398950:CDS 30.0%
! ATGGTGTTAAGGTATAATAG+TGG + chr3_2:21071209-21071228 Msa0398950:intron 30.0%
! CTAAAGCTTTTCTCTTTTGT+TGG + chr3_2:21071324-21071343 Msa0398950:intron 30.0%
! ATGACATTTAGTGCATGTTT+TGG + chr3_2:21071437-21071456 Msa0398950:intron 30.0%
! TGATCTTGTTATGTAGACTT+AGG + chr3_2:21071591-21071610 Msa0398950:intron 30.0%
! TATTGTTTAGGCTTTTACAG+GGG + chr3_2:21071654-21071673 Msa0398950:intron 30.0%
TCATAGAGTCAACTAAAAAG+TGG + chr3_2:21071730-21071749 Msa0398950:CDS 30.0%
CCATGATAATCAATCATTGT+TGG - chr3_2:21072072-21072091 None:intergenic 30.0%
CCAACAATGATTGATTATCA+TGG + chr3_2:21072069-21072088 Msa0398950:intron 30.0%
! TTTTATCCGTGCAAATTTGA+AGG + chr3_2:21072139-21072158 Msa0398950:intron 30.0%
!! ATATTTTCAGGAGATACACT+TGG + chr3_2:21072240-21072259 Msa0398950:intron 30.0%
!! TATTTTCAGGAGATACACTT+GGG + chr3_2:21072241-21072260 Msa0398950:intron 30.0%
! TAATCATATATTTCTGCACC+AGG - chr3_2:21072372-21072391 None:intergenic 30.0%
GTTTAAAGGGTTTATATGCA+GGG + chr3_2:21072439-21072458 Msa0398950:CDS 30.0%
ATTATGAAAAGGAAAGCCTA+GGG - chr3_2:21072592-21072611 None:intergenic 30.0%
AATTATGAAAAGGAAAGCCT+AGG - chr3_2:21072593-21072612 None:intergenic 30.0%
! GTGATAAGAAGATTTGACTT+CGG + chr3_2:21072640-21072659 Msa0398950:intron 30.0%
! TGATAAGAAGATTTGACTTC+GGG + chr3_2:21072641-21072660 Msa0398950:intron 30.0%
ATAAGTAAAATGGCTCTTGA+GGG - chr3_2:21072801-21072820 None:intergenic 30.0%
TATAAGTAAAATGGCTCTTG+AGG - chr3_2:21072802-21072821 None:intergenic 30.0%
! GAAGCTTTAACTTATCTGAA+TGG - chr3_2:21072880-21072899 None:intergenic 30.0%
!!! GCTTCACATGTTTTTTTGAA+TGG + chr3_2:21072895-21072914 Msa0398950:intron 30.0%
TATTAAAAAAAAGGGCAACC+CGG - chr3_2:21073327-21073346 None:intergenic 30.0%
!!! CAGTTTTATTGAAAGTCCAT+TGG + chr3_2:21073540-21073559 Msa0398950:intron 30.0%
TTATGATCAGACATAGAGAT+TGG + chr3_2:21073671-21073690 Msa0398950:intron 30.0%
AATAAAAGATGGTTCCGATA+TGG - chr3_2:21073757-21073776 None:intergenic 30.0%
TAGACTCTAGTTAATTTCCT+TGG - chr3_2:21073903-21073922 None:intergenic 30.0%
GTTAGAAATACAATGACATG+TGG - chr3_2:21074021-21074040 None:intergenic 30.0%
TATGTATTCAAATCTTGTGC+TGG + chr3_2:21074111-21074130 Msa0398950:intron 30.0%
TTGAAAGATGCTACAGAATA+CGG + chr3_2:21074239-21074258 Msa0398950:CDS 30.0%
GATGGATATCTAATCCAAAT+TGG + chr3_2:21074270-21074289 Msa0398950:CDS 30.0%
GAATTGTTAACATGCCAATT+TGG - chr3_2:21074287-21074306 None:intergenic 30.0%
AAAATTAAGTGGTATCCTGA+TGG - chr3_2:21074573-21074592 None:intergenic 30.0%
TTTCTTCAATGAATGTTGTC+TGG + chr3_2:21074590-21074609 Msa0398950:intron 30.0%
ATTTAGGTATAATGGTTGGT+TGG + chr3_2:21074819-21074838 Msa0398950:intron 30.0%
TGGATGCAATTTACAACATA+TGG + chr3_2:21074839-21074858 Msa0398950:CDS 30.0%
GGATGCAATTTACAACATAT+GGG + chr3_2:21074840-21074859 Msa0398950:CDS 30.0%
AGAAAAGAAGAAATCTTTGG+AGG + chr3_2:21075023-21075042 Msa0398950:CDS 30.0%
ACCTTTAACTAAGTCAAACT+TGG + chr3_2:21075185-21075204 Msa0398950:three_prime_UTR 30.0%
! ACCAAGTTTGACTTAGTTAA+AGG - chr3_2:21075189-21075208 None:intergenic 30.0%
! ATATTTTCACGCCAAGTTAT+TGG + chr3_2:21075369-21075388 Msa0398950:three_prime_UTR 30.0%
AAGCAAATTCTTGCGGTTTA+GGG - chr3_2:21068168-21068187 None:intergenic 35.0%
AAAGCAAATTCTTGCGGTTT+AGG - chr3_2:21068169-21068188 None:intergenic 35.0%
!!! GTTTCTCACGACCATTTTTT+CGG + chr3_2:21068262-21068281 Msa0398950:CDS 35.0%
TCTTAACAACCCACAAGATT+GGG - chr3_2:21068506-21068525 None:intergenic 35.0%
TTCTTAACAACCCACAAGAT+TGG - chr3_2:21068507-21068526 None:intergenic 35.0%
GGATTGAAGTTGTGAAATAG+TGG - chr3_2:21069078-21069097 None:intergenic 35.0%
GGTATCACATGGAAAAATAC+AGG + chr3_2:21069126-21069145 Msa0398950:intron 35.0%
GAAAAATACAGGCCTCTTAT+TGG + chr3_2:21069137-21069156 Msa0398950:intron 35.0%
AGTGTAAATCAGTCTTACAC+TGG - chr3_2:21069166-21069185 None:intergenic 35.0%
TACACTTTGACAATGTAGTC+AGG + chr3_2:21069218-21069237 Msa0398950:intron 35.0%
TCGTGTTTACATTCTTTCAC+CGG - chr3_2:21069271-21069290 None:intergenic 35.0%
AGAGCAAAACAGAGAAAACA+CGG + chr3_2:21069463-21069482 Msa0398950:intron 35.0%
AGAAAACACGGTTTGTAAGT+AGG + chr3_2:21069475-21069494 Msa0398950:intron 35.0%
ACCTTGCACTCTGATTATTA+TGG + chr3_2:21069569-21069588 Msa0398950:intron 35.0%
ACCATAATAATCAGAGTGCA+AGG - chr3_2:21069573-21069592 None:intergenic 35.0%
TCTGATTATTATGGTTCCCT+TGG + chr3_2:21069578-21069597 Msa0398950:intron 35.0%
CTGATTATTATGGTTCCCTT+GGG + chr3_2:21069579-21069598 Msa0398950:intron 35.0%
TGATTATTATGGTTCCCTTG+GGG + chr3_2:21069580-21069599 Msa0398950:intron 35.0%
ACTTTATGCTGCATAAGAAC+GGG + chr3_2:21069756-21069775 Msa0398950:intron 35.0%
CCAAATGCAGGTACAAAAAT+GGG - chr3_2:21069912-21069931 None:intergenic 35.0%
ACCAAATGCAGGTACAAAAA+TGG - chr3_2:21069913-21069932 None:intergenic 35.0%
GGTATGACGTGGAAAAATAA+AGG + chr3_2:21069930-21069949 Msa0398950:intron 35.0%
! CAGTCTTATATTGACATCAG+AGG - chr3_2:21069956-21069975 None:intergenic 35.0%
!! TTATTTTTCCCAATGTTGGC+GGG + chr3_2:21070341-21070360 Msa0398950:intron 35.0%
AAAATGCAGTCACAAAAGTG+TGG - chr3_2:21070533-21070552 None:intergenic 35.0%
!! TGGTTACTAGGGTATTTTGT+GGG + chr3_2:21070662-21070681 Msa0398950:intron 35.0%
GTTTAAAAAGTTGCTCTCTC+AGG + chr3_2:21070705-21070724 Msa0398950:intron 35.0%
GAAGGCCTAAATTACTTGTA+AGG - chr3_2:21070749-21070768 None:intergenic 35.0%
CAAATACGGTCAATTTGTGA+AGG - chr3_2:21070937-21070956 None:intergenic 35.0%
!!! CCGTATTTGTTTTGCAAAAC+TGG + chr3_2:21070948-21070967 Msa0398950:intron 35.0%
TAATGAGGCTTAGTTAGGTT+GGG - chr3_2:21070997-21071016 None:intergenic 35.0%
ATAATGAGGCTTAGTTAGGT+TGG - chr3_2:21070998-21071017 None:intergenic 35.0%
!!! CGTGTTTTGATAGTATCAAC+CGG - chr3_2:21071166-21071185 None:intergenic 35.0%
ATTTGTCTGTAGAACCAGAA+AGG + chr3_2:21071354-21071373 Msa0398950:intron 35.0%
ATCAGTCATGTATAGATGCT+TGG - chr3_2:21071548-21071567 None:intergenic 35.0%
GACTCAAAATGTGTAACTTC+TGG - chr3_2:21071865-21071884 None:intergenic 35.0%
!! TTACACATTTTGAGTCACTC+AGG + chr3_2:21071869-21071888 Msa0398950:intron 35.0%
!! TACACATTTTGAGTCACTCA+GGG + chr3_2:21071870-21071889 Msa0398950:intron 35.0%
AATCATTGTTGGCCCATAAA+TGG - chr3_2:21072061-21072080 None:intergenic 35.0%
AGTTCTACTGCAATGAAGAA+TGG + chr3_2:21072333-21072352 Msa0398950:CDS 35.0%
AATGGCATTGCAATAAAACC+TGG + chr3_2:21072351-21072370 Msa0398950:CDS 35.0%
GGTTTAAAGGGTTTATATGC+AGG + chr3_2:21072438-21072457 Msa0398950:CDS 35.0%
TAGACAATAAATAGCACCCT+AGG + chr3_2:21072573-21072592 Msa0398950:intron 35.0%
CTAACTTATCAGAACTGTTG+TGG - chr3_2:21072738-21072757 None:intergenic 35.0%
TAAGTAAAATGGCTCTTGAG+GGG - chr3_2:21072800-21072819 None:intergenic 35.0%
AACTTATCTGAATGGCTCTT+GGG - chr3_2:21072872-21072891 None:intergenic 35.0%
TAACTTATCTGAATGGCTCT+TGG - chr3_2:21072873-21072892 None:intergenic 35.0%
! ACTTTGGTTTCACGATTTCA+TGG + chr3_2:21072969-21072988 Msa0398950:intron 35.0%
ATATTTGTCTACACTGGCAA+GGG + chr3_2:21073027-21073046 Msa0398950:CDS 35.0%
GTTGTTGTCATGTGATTGTA+AGG + chr3_2:21073185-21073204 Msa0398950:intron 35.0%
!!! TTACCCTGTTTTTACACAAG+AGG - chr3_2:21073236-21073255 None:intergenic 35.0%
TCTTGTGTAAAAACAGGGTA+AGG + chr3_2:21073235-21073254 Msa0398950:intron 35.0%
TATGGATAAGCTCGTAAGAT+TGG - chr3_2:21073739-21073758 None:intergenic 35.0%
TCTTACGAGCTTATCCATAT+CGG + chr3_2:21073740-21073759 Msa0398950:intron 35.0%
ACGTGCATTGCAATAAAAGA+TGG - chr3_2:21073768-21073787 None:intergenic 35.0%
! CAATGCACGTTCTTCTTTTT+GGG + chr3_2:21073778-21073797 Msa0398950:intron 35.0%
GAAATACAATGACATGTGGT+GGG - chr3_2:21074017-21074036 None:intergenic 35.0%
AGAAATACAATGACATGTGG+TGG - chr3_2:21074018-21074037 None:intergenic 35.0%
TGAAAGATGCTACAGAATAC+GGG + chr3_2:21074240-21074259 Msa0398950:CDS 35.0%
CATGTTAACAATTCCGTTGA+GGG + chr3_2:21074293-21074312 Msa0398950:CDS 35.0%
! AACGGGATATCTTTTGCATT+TGG + chr3_2:21074739-21074758 Msa0398950:intron 35.0%
TACAACATATGGGATAAGGA+AGG + chr3_2:21074850-21074869 Msa0398950:CDS 35.0%
!! TTTAATGAAAGAGTGCCCAA+TGG + chr3_2:21074970-21074989 Msa0398950:CDS 35.0%
! AAAGAAGAAATCTTTGGAGG+AGG + chr3_2:21075026-21075045 Msa0398950:CDS 35.0%
TAACTAAGTCAAACTTGGTC+TGG + chr3_2:21075190-21075209 Msa0398950:three_prime_UTR 35.0%
TCTTCACATTATAGCCTCTA+TGG + chr3_2:21075268-21075287 Msa0398950:three_prime_UTR 35.0%
CAGTGACTAAAAACATGTCT+GGG + chr3_2:21075291-21075310 Msa0398950:three_prime_UTR 35.0%
AGCTTGTGGTTTACTGGAAA+TGG - chr3_2:21068233-21068252 None:intergenic 40.0%
GAATTCTTGAATCACGGCAT+TGG + chr3_2:21068538-21068557 Msa0398950:intron 40.0%
GTAATCACATGTGTCTGTGT+CGG - chr3_2:21068573-21068592 None:intergenic 40.0%
TCGTACACTGACATCCAATA+AGG - chr3_2:21068815-21068834 None:intergenic 40.0%
!! AATTTGATGGAAGGCGTCTT+AGG + chr3_2:21068884-21068903 Msa0398950:intron 40.0%
! GTAATCACATGTGTCGATGT+CGG - chr3_2:21068931-21068950 None:intergenic 40.0%
TTACACTGGCATCCAATAAG+AGG - chr3_2:21069152-21069171 None:intergenic 40.0%
GGTGAAAGAATGTAAACACG+AGG + chr3_2:21069270-21069289 Msa0398950:intron 40.0%
TAAACACGAGGAACGTAACA+CGG + chr3_2:21069282-21069301 Msa0398950:intron 40.0%
AGGGAATATAGAGGGAAAAC+AGG + chr3_2:21069353-21069372 Msa0398950:intron 40.0%
GGGAATATAGAGGGAAAACA+GGG + chr3_2:21069354-21069373 Msa0398950:intron 40.0%
GGAATATAGAGGGAAAACAG+GGG + chr3_2:21069355-21069374 Msa0398950:intron 40.0%
GAGAAAAACAGAGGAAACAG+AGG + chr3_2:21069436-21069455 Msa0398950:intron 40.0%
TTGTAAGTAGGATCGAAGCA+CGG + chr3_2:21069487-21069506 Msa0398950:intron 40.0%
CTTAACTACTCATTCCCCAA+GGG - chr3_2:21069597-21069616 None:intergenic 40.0%
TCTTAACTACTCATTCCCCA+AGG - chr3_2:21069598-21069617 None:intergenic 40.0%
TGATTCGCTGCATTAGCATA+TGG + chr3_2:21069656-21069675 Msa0398950:intron 40.0%
CTTTATGCTGCATAAGAACG+GGG + chr3_2:21069757-21069776 Msa0398950:intron 40.0%
!! CCCATTTTTGTACCTGCATT+TGG + chr3_2:21069909-21069928 Msa0398950:intron 40.0%
AGTATAAGGTGTGTCTTCTG+TGG + chr3_2:21070429-21070448 Msa0398950:intron 40.0%
!! CTGGTTACTAGGGTATTTTG+TGG + chr3_2:21070661-21070680 Msa0398950:intron 40.0%
!! GGTTACTAGGGTATTTTGTG+GGG + chr3_2:21070663-21070682 Msa0398950:intron 40.0%
! ATAAACGGACTTTGCAGGAT+AGG - chr3_2:21070816-21070835 None:intergenic 40.0%
AGGGACGAATGAGACATAAA+CGG - chr3_2:21070831-21070850 None:intergenic 40.0%
ATCGATAACAATGGTTGGGA+GGG - chr3_2:21070850-21070869 None:intergenic 40.0%
AGTGCAACAACGCCATATAT+CGG - chr3_2:21070909-21070928 None:intergenic 40.0%
TACGGTCAATTTGTGAAGGA+TGG - chr3_2:21070933-21070952 None:intergenic 40.0%
!! TTGTTTTGCAAAACTGGCAC+CGG + chr3_2:21070954-21070973 Msa0398950:intron 40.0%
GGAACAGTGTTGTCAAATAC+CGG - chr3_2:21070976-21070995 None:intergenic 40.0%
AAGTATGGAGGGAGTTTGTA+TGG + chr3_2:21071101-21071120 Msa0398950:intron 40.0%
AGTATGGAGGGAGTTTGTAT+GGG + chr3_2:21071102-21071121 Msa0398950:intron 40.0%
! AAGATTCACATCCTAGCCTT+GGG + chr3_2:21071757-21071776 Msa0398950:CDS 40.0%
!! ACACATTTTGAGTCACTCAG+GGG + chr3_2:21071871-21071890 Msa0398950:intron 40.0%
TTCAAGGCACAATTACATCC+TGG + chr3_2:21072310-21072329 Msa0398950:CDS 40.0%
TATAAAGGGATGTTCCATGC+AGG + chr3_2:21072393-21072412 Msa0398950:CDS 40.0%
AGCTCAATATGCAGAACACA+GGG + chr3_2:21072417-21072436 Msa0398950:CDS 40.0%
ATGCAGAACACAGGGTTTAA+AGG + chr3_2:21072425-21072444 Msa0398950:CDS 40.0%
TGCAGAACACAGGGTTTAAA+GGG + chr3_2:21072426-21072445 Msa0398950:CDS 40.0%
ACTTATCTGAATGGCTCTTG+GGG - chr3_2:21072871-21072890 None:intergenic 40.0%
GAAAAAGTTGGAGCTTCACA+TGG + chr3_2:21072917-21072936 Msa0398950:intron 40.0%
CTGCAGATATTTGTCTACAC+TGG + chr3_2:21073021-21073040 Msa0398950:intron 40.0%
GATATTTGTCTACACTGGCA+AGG + chr3_2:21073026-21073045 Msa0398950:intron 40.0%
AATACCATCAAGCCAGCAAA+TGG - chr3_2:21073058-21073077 None:intergenic 40.0%
! ACTTTTATGAGGGGTAACCT+TGG + chr3_2:21073149-21073168 Msa0398950:intron 40.0%
GTCATGTGATTGTAAGGTCA+CGG + chr3_2:21073191-21073210 Msa0398950:intron 40.0%
TCATGTGATTGTAAGGTCAC+GGG + chr3_2:21073192-21073211 Msa0398950:intron 40.0%
ACAGCCTCTTGTGTAAAAAC+AGG + chr3_2:21073229-21073248 Msa0398950:intron 40.0%
CAGCCTCTTGTGTAAAAACA+GGG + chr3_2:21073230-21073249 Msa0398950:intron 40.0%
CGTACAATACACCAAATGGT+GGG + chr3_2:21073261-21073280 Msa0398950:intron 40.0%
! GCTTTAGATGTATCAGCCAA+TGG - chr3_2:21073559-21073578 None:intergenic 40.0%
! GCAATGCACGTTCTTCTTTT+TGG + chr3_2:21073777-21073796 Msa0398950:intron 40.0%
TAAGCAAGTGGTAGTTAAGG+CGG - chr3_2:21073822-21073841 None:intergenic 40.0%
GCTTAAGCAAGTGGTAGTTA+AGG - chr3_2:21073825-21073844 None:intergenic 40.0%
TGCAGAGTTATGATCGCTAT+TGG - chr3_2:21074081-21074100 None:intergenic 40.0%
CCTATAGCAATTGCATGGAA+AGG - chr3_2:21074202-21074221 None:intergenic 40.0%
CCTTTCCATGCAATTGCTAT+AGG + chr3_2:21074199-21074218 Msa0398950:intron 40.0%
CACAACCTATAGCAATTGCA+TGG - chr3_2:21074207-21074226 None:intergenic 40.0%
CAGAATACGGGAAGAAAAGA+TGG + chr3_2:21074252-21074271 Msa0398950:CDS 40.0%
GCATGTTAACAATTCCGTTG+AGG + chr3_2:21074292-21074311 Msa0398950:CDS 40.0%
TAACAATTCCGTTGAGGGAT+TGG + chr3_2:21074298-21074317 Msa0398950:CDS 40.0%
TCCTAAAACCAATCCCTCAA+CGG - chr3_2:21074309-21074328 None:intergenic 40.0%
ACTTAAGTACATCGGACCAA+AGG - chr3_2:21074362-21074381 None:intergenic 40.0%
! GCTAGAGCACTTAAGTACAT+CGG - chr3_2:21074370-21074389 None:intergenic 40.0%
!!! CTAGTTTTGACGACATCCAA+AGG - chr3_2:21074465-21074484 None:intergenic 40.0%
CTTTGGATGTCGTCAAAACT+AGG + chr3_2:21074463-21074482 Msa0398950:CDS 40.0%
AAAACTAGGCTGCAAGTTCA+GGG + chr3_2:21074477-21074496 Msa0398950:CDS 40.0%
GAGAAATTCCACAGCCATAA+AGG - chr3_2:21074941-21074960 None:intergenic 40.0%
ACATTGATCGAACCACCATT+GGG - chr3_2:21074988-21075007 None:intergenic 40.0%
AACATTGATCGAACCACCAT+TGG - chr3_2:21074989-21075008 None:intergenic 40.0%
! AGGAGGCTAGTTAAAAGTTG+TGG + chr3_2:21075043-21075062 Msa0398950:exon 40.0%
!!! GTTTTTAGTCACTGCCATAG+AGG - chr3_2:21075285-21075304 None:intergenic 40.0%
GCAGTGACTAAAAACATGTC+TGG + chr3_2:21075290-21075309 Msa0398950:three_prime_UTR 40.0%
GACTAAAAACATGTCTGGGT+TGG + chr3_2:21075295-21075314 Msa0398950:three_prime_UTR 40.0%
TGGTCGTGAGAAACGTTGTT+CGG - chr3_2:21068256-21068275 None:intergenic 45.0%
! TCTTGAATCACGGCATTGGA+AGG + chr3_2:21068542-21068561 Msa0398950:intron 45.0%
AACGAGTTCCTACGTAGGAT+CGG + chr3_2:21069241-21069260 Msa0398950:intron 45.0%
ACGTAACACGGTTCGTAAGT+AGG + chr3_2:21069294-21069313 Msa0398950:intron 45.0%
GGTTCGTAAGTAGGATCGAT+AGG + chr3_2:21069303-21069322 Msa0398950:intron 45.0%
AATCAGAGTGCAAGGTAGTC+AGG - chr3_2:21069565-21069584 None:intergenic 45.0%
TACCTGCATTTGGTATGACG+TGG + chr3_2:21069919-21069938 Msa0398950:intron 45.0%
TTCCACGTCATACCAAATGC+AGG - chr3_2:21069924-21069943 None:intergenic 45.0%
!!! ATCAGGGTATTTTTTGGGGC+AGG + chr3_2:21070098-21070117 Msa0398950:intron 45.0%
!!! TCAGGGTATTTTTTGGGGCA+GGG + chr3_2:21070099-21070118 Msa0398950:intron 45.0%
ATTAACTGCCCGCCAACATT+GGG - chr3_2:21070352-21070371 None:intergenic 45.0%
AATTAACTGCCCGCCAACAT+TGG - chr3_2:21070353-21070372 None:intergenic 45.0%
! GAGACATAAACGGACTTTGC+AGG - chr3_2:21070821-21070840 None:intergenic 45.0%
CATCGATAACAATGGTTGGG+AGG - chr3_2:21070851-21070870 None:intergenic 45.0%
CTCCCAACCATTGTTATCGA+TGG + chr3_2:21070849-21070868 Msa0398950:intron 45.0%
CGCCATCGATAACAATGGTT+GGG - chr3_2:21070854-21070873 None:intergenic 45.0%
CCAACCATTGTTATCGATGG+CGG + chr3_2:21070852-21070871 Msa0398950:intron 45.0%
TTGACTTACCGGCCGATATA+TGG + chr3_2:21070894-21070913 Msa0398950:intron 45.0%
GTATGGAGGGAGTTTGTATG+GGG + chr3_2:21071103-21071122 Msa0398950:intron 45.0%
CCATCTGCAATATGCCTTTC+TGG - chr3_2:21071371-21071390 None:intergenic 45.0%
! CCAGAAAGGCATATTGCAGA+TGG + chr3_2:21071368-21071387 Msa0398950:CDS 45.0%
AAGGCATATTGCAGATGGTG+CGG + chr3_2:21071373-21071392 Msa0398950:CDS 45.0%
!! TGGAAGGTCGATGGATTAAG+AGG + chr3_2:21071402-21071421 Msa0398950:CDS 45.0%
! TTTAGGCTTTTACAGGGGTG+TGG + chr3_2:21071659-21071678 Msa0398950:intron 45.0%
GCTACTGGTGCAACATACTT+TGG + chr3_2:21071705-21071724 Msa0398950:CDS 45.0%
GAAGATTCACATCCTAGCCT+TGG + chr3_2:21071756-21071775 Msa0398950:CDS 45.0%
!! AGATTCACATCCTAGCCTTG+GGG + chr3_2:21071758-21071777 Msa0398950:CDS 45.0%
CAGCAATGAAATGTGCCCAA+TGG - chr3_2:21071785-21071804 None:intergenic 45.0%
CATTGGGCACATTTCATTGC+TGG + chr3_2:21071783-21071802 Msa0398950:CDS 45.0%
CATTTCATTGCTGGAGCTGT+TGG + chr3_2:21071792-21071811 Msa0398950:CDS 45.0%
! GAGCTGTTGGTAAGCAGATT+TGG + chr3_2:21071805-21071824 Msa0398950:intron 45.0%
TACATAATGCGATGCTGCTG+TGG + chr3_2:21072107-21072126 Msa0398950:intron 45.0%
CTTCATTGCAGTAGAACTCC+AGG - chr3_2:21072331-21072350 None:intergenic 45.0%
CAGCTCAATATGCAGAACAC+AGG + chr3_2:21072416-21072435 Msa0398950:CDS 45.0%
TTATCTGAATGGCTCTTGGG+GGG - chr3_2:21072869-21072888 None:intergenic 45.0%
CTTATCTGAATGGCTCTTGG+GGG - chr3_2:21072870-21072889 None:intergenic 45.0%
!! TGTACCATTTGCTGGCTTGA+TGG + chr3_2:21073051-21073070 Msa0398950:CDS 45.0%
! TTACACAAGAGGCTGTTTCC+AGG - chr3_2:21073225-21073244 None:intergenic 45.0%
GCTGCGTACAATACACCAAA+TGG + chr3_2:21073257-21073276 Msa0398950:intron 45.0%
GCGTACAATACACCAAATGG+TGG + chr3_2:21073260-21073279 Msa0398950:intron 45.0%
!!! CTTTTTGGGTGTGCGTTTCA+GGG + chr3_2:21073382-21073401 Msa0398950:intron 45.0%
!!! TCCGTTGAGGGATTGGTTTT+AGG + chr3_2:21074305-21074324 Msa0398950:CDS 45.0%
!!! GTTGAGGGATTGGTTTTAGG+AGG + chr3_2:21074308-21074327 Msa0398950:CDS 45.0%
!!! GGGATTGGTTTTAGGAGGAT+TGG + chr3_2:21074313-21074332 Msa0398950:CDS 45.0%
!!! TTGGTTTTAGGAGGATTGGC+TGG + chr3_2:21074317-21074336 Msa0398950:CDS 45.0%
TATGTCCTGTTCTCTGCCTT+TGG + chr3_2:21074343-21074362 Msa0398950:intron 45.0%
TGCATATCTCACGACACCTT+TGG + chr3_2:21074446-21074465 Msa0398950:CDS 45.0%
CAAAACTAGGCTGCAAGTTC+AGG + chr3_2:21074476-21074495 Msa0398950:CDS 45.0%
AAGTTCAGGGTTCAACGTTG+AGG + chr3_2:21074490-21074509 Msa0398950:CDS 45.0%
! ATAAATGTGTACCGGCCATC+AGG + chr3_2:21074555-21074574 Msa0398950:intron 45.0%
TTAAGTGGTATCCTGATGGC+CGG - chr3_2:21074569-21074588 None:intergenic 45.0%
! AATGTTGTCTGGAACACGTC+TGG + chr3_2:21074601-21074620 Msa0398950:intron 45.0%
!! ATGGGATAAGGAAGGCGTTA+AGG + chr3_2:21074858-21074877 Msa0398950:CDS 45.0%
!! TGGGATAAGGAAGGCGTTAA+GGG + chr3_2:21074859-21074878 Msa0398950:CDS 45.0%
! AAGGCGTTAAGGGGATGTTT+AGG + chr3_2:21074869-21074888 Msa0398950:CDS 45.0%
AGGCGTTAAGGGGATGTTTA+GGG + chr3_2:21074870-21074889 Msa0398950:CDS 45.0%
GAATGTACCACGCAATTCTG+GGG - chr3_2:21074903-21074922 None:intergenic 45.0%
GGAATGTACCACGCAATTCT+GGG - chr3_2:21074904-21074923 None:intergenic 45.0%
CAGAATTGCGTGGTACATTC+CGG + chr3_2:21074903-21074922 Msa0398950:CDS 45.0%
!! ATAAAGGTAAGCGCTGAAGC+CGG - chr3_2:21074925-21074944 None:intergenic 45.0%
!! AATGAAAGAGTGCCCAATGG+TGG + chr3_2:21074973-21074992 Msa0398950:CDS 45.0%
!! AAATATATGATTATTATAAA+GGG + chr3_2:21072379-21072398 Msa0398950:CDS 5.0%
GTTCGGAGCTTGTGGTTTAC+TGG - chr3_2:21068239-21068258 None:intergenic 50.0%
GAAACGTTGTTCGGAGCTTG+TGG - chr3_2:21068247-21068266 None:intergenic 50.0%
!! ATGGGCACTGACATGGACAA+CGG - chr3_2:21068650-21068669 None:intergenic 50.0%
!! CAGCTACGAAGCACTGACAT+GGG - chr3_2:21068668-21068687 None:intergenic 50.0%
!! ACAGCTACGAAGCACTGACA+TGG - chr3_2:21068669-21068688 None:intergenic 50.0%
TCTGGTGTCCATGTCAGTGT+CGG + chr3_2:21068988-21069007 Msa0398950:intron 50.0%
!! ATGAAGCACCGACACTGACA+TGG - chr3_2:21068999-21069018 None:intergenic 50.0%
!! TGTCAGTGTCGGTGCTTCAT+AGG + chr3_2:21068999-21069018 Msa0398950:intron 50.0%
TCAGGAACGAGTTCCTACGT+AGG + chr3_2:21069236-21069255 Msa0398950:intron 50.0%
AGTTCCTACGTAGGATCGGT+CGG + chr3_2:21069245-21069264 Msa0398950:intron 50.0%
TGCTGCATAAGAACGGGGAA+AGG + chr3_2:21069762-21069781 Msa0398950:intron 50.0%
CATAAGAACGGGGAAAGGAG+TGG + chr3_2:21069767-21069786 Msa0398950:intron 50.0%
!!! GGTATTTTTTGGGGCAGGGA+AGG + chr3_2:21070103-21070122 Msa0398950:intron 50.0%
!! TAGGGTATTTTGTGGGGCAG+TGG + chr3_2:21070669-21070688 Msa0398950:intron 50.0%
CCGCCATCGATAACAATGGT+TGG - chr3_2:21070855-21070874 None:intergenic 50.0%
CCATCCGCCATCGATAACAA+TGG - chr3_2:21070859-21070878 None:intergenic 50.0%
!! CCATTGTTATCGATGGCGGA+TGG + chr3_2:21070856-21070875 Msa0398950:intron 50.0%
!! TTGTTATCGATGGCGGATGG+CGG + chr3_2:21070859-21070878 Msa0398950:intron 50.0%
CAACAACGCCATATATCGGC+CGG - chr3_2:21070905-21070924 None:intergenic 50.0%
GTTTGTATGGGGAGCTGTTG+CGG + chr3_2:21071114-21071133 Msa0398950:CDS 50.0%
TTTGTATGGGGAGCTGTTGC+GGG + chr3_2:21071115-21071134 Msa0398950:CDS 50.0%
TGGGGAAGGAATGATGCATC+CGG + chr3_2:21071144-21071163 Msa0398950:CDS 50.0%
!! TTTTACAGGGGTGTGGTACC+TGG + chr3_2:21071666-21071685 Msa0398950:CDS 50.0%
!! GTTACTGGCTCTCTTGCTAC+TGG + chr3_2:21071690-21071709 Msa0398950:CDS 50.0%
!! GATTCACATCCTAGCCTTGG+GGG + chr3_2:21071759-21071778 Msa0398950:CDS 50.0%
! CGCTGCTTTATCACTTCGCA+TGG - chr3_2:21072282-21072301 None:intergenic 50.0%
AAGCAGCGCATGCAAGTTCA+AGG + chr3_2:21072294-21072313 Msa0398950:CDS 50.0%
TGCATATTGAGCTGCCTGCA+TGG - chr3_2:21072410-21072429 None:intergenic 50.0%
CAGAACTGTTGTGGCTCTTG+AGG - chr3_2:21072729-21072748 None:intergenic 50.0%
GCAAGGGATGTACCATTTGC+TGG + chr3_2:21073043-21073062 Msa0398950:CDS 50.0%
! CAAATGGTGGGACTTGTTCC+CGG + chr3_2:21073273-21073292 Msa0398950:intron 50.0%
!!! GCTTTTTGGGTGTGCGTTTC+AGG + chr3_2:21073381-21073400 Msa0398950:intron 50.0%
!!! GTTTTAGGAGGATTGGCTGG+TGG + chr3_2:21074320-21074339 Msa0398950:CDS 50.0%
!! GGGATAAGGAAGGCGTTAAG+GGG + chr3_2:21074860-21074879 Msa0398950:CDS 50.0%
GGCGTTAAGGGGATGTTTAG+GGG + chr3_2:21074871-21074890 Msa0398950:CDS 50.0%
CGGAATGTACCACGCAATTC+TGG - chr3_2:21074905-21074924 None:intergenic 50.0%
GGCTTCAGCGCTTACCTTTA+TGG + chr3_2:21074924-21074943 Msa0398950:CDS 50.0%
AGCGCTTACCTTTATGGCTG+TGG + chr3_2:21074930-21074949 Msa0398950:CDS 50.0%
!! CACTGACATGGGCACTGACA+TGG - chr3_2:21068657-21068676 None:intergenic 55.0%
GTCGGACATCAGACACGTGT+TGG - chr3_2:21068913-21068932 None:intergenic 55.0%
ATCGTGCGATCCTACGTGCT+GGG + chr3_2:21069532-21069551 Msa0398950:intron 55.0%
AGGAACAAGTCCCAGCACGT+AGG - chr3_2:21069545-21069564 None:intergenic 55.0%
! GAGCTGTTGCGGGTGCTTTT+GGG + chr3_2:21071125-21071144 Msa0398950:CDS 55.0%
! AGCTGTTGCGGGTGCTTTTG+GGG + chr3_2:21071126-21071145 Msa0398950:CDS 55.0%
!! GGTGTGGTACCTGGTGTTAC+TGG + chr3_2:21071675-21071694 Msa0398950:CDS 55.0%
GCAAGAGAGCCAGTAACACC+AGG - chr3_2:21071687-21071706 None:intergenic 55.0%
CAACTTTGCCAGTTGCGCCA+AGG - chr3_2:21073169-21073188 None:intergenic 55.0%
AAGGTCACGGGTTCAAGTCC+TGG + chr3_2:21073204-21073223 Msa0398950:intron 55.0%
CGGGAACAAGTCCCACCATT+TGG - chr3_2:21073275-21073294 None:intergenic 55.0%
CTGAAGCTCCCACATACGCA+GGG - chr3_2:21073300-21073319 None:intergenic 55.0%
ACTGAAGCTCCCACATACGC+AGG - chr3_2:21073301-21073320 None:intergenic 55.0%
ATGTGGGAGCTTCAGTGCAC+CGG + chr3_2:21073305-21073324 Msa0398950:intron 55.0%
TGTCACTACCAGTGCTCAGC+AGG + chr3_2:21073590-21073609 Msa0398950:intron 55.0%
CTAAGACACCTGCTGAGCAC+TGG - chr3_2:21073601-21073620 None:intergenic 55.0%
GCAAGTGGTAGTTAAGGCGG+AGG - chr3_2:21073819-21073838 None:intergenic 55.0%
TCGGACCAAAGGCAGAGAAC+AGG - chr3_2:21074351-21074370 None:intergenic 55.0%
GTAGGATCGAAGCACGGTCG+AGG + chr3_2:21069493-21069512 Msa0398950:intron 60.0%
GATCGTGCGATCCTACGTGC+TGG + chr3_2:21069531-21069550 Msa0398950:intron 60.0%
! GGAGCTGTTGCGGGTGCTTT+TGG + chr3_2:21071124-21071143 Msa0398950:CDS 60.0%
!! GTTGCGGGTGCTTTTGGGGA+AGG + chr3_2:21071130-21071149 Msa0398950:CDS 60.0%
TGCAGATGGTGCGGTCTGTC+TGG + chr3_2:21071382-21071401 Msa0398950:CDS 60.0%
GATGGTGCGGTCTGTCTGGA+AGG + chr3_2:21071386-21071405 Msa0398950:CDS 60.0%
CGGTCTGTCTGGAAGGTCGA+TGG + chr3_2:21071393-21071412 Msa0398950:CDS 60.0%
!! ATCCTAGCCTTGGGGGCCAT+TGG + chr3_2:21071766-21071785 Msa0398950:CDS 60.0%
!! TCCTAGCCTTGGGGGCCATT+GGG + chr3_2:21071767-21071786 Msa0398950:CDS 60.0%
AATGTGCCCAATGGCCCCCA+AGG - chr3_2:21071776-21071795 None:intergenic 60.0%
! TGGGGGGCACATAGCTCAAC+TGG - chr3_2:21072853-21072872 None:intergenic 60.0%
AGGGGTAACCTTGGCGCAAC+TGG + chr3_2:21073158-21073177 Msa0398950:intron 60.0%
TTCCCGGACCCTGCGTATGT+GGG + chr3_2:21073289-21073308 Msa0398950:intron 60.0%
TGTGGGAGCTTCAGTGCACC+GGG + chr3_2:21073306-21073325 Msa0398950:intron 60.0%
CCTACGTAGGATCGGTCGGC+CGG + chr3_2:21069249-21069268 Msa0398950:intron 65.0%
!! GAAGCACGGTCGAGGTGCTG+TGG + chr3_2:21069501-21069520 Msa0398950:intron 65.0%
GTTCCCGGACCCTGCGTATG+TGG + chr3_2:21073288-21073307 Msa0398950:intron 65.0%
CTCCCACATACGCAGGGTCC+GGG - chr3_2:21073294-21073313 None:intergenic 65.0%
GCTCCCACATACGCAGGGTC+CGG - chr3_2:21073295-21073314 None:intergenic 65.0%
GCAGCGTCCCCAGAATTGCG+TGG + chr3_2:21074893-21074912 Msa0398950:CDS 65.0%
CCGGCCGACCGATCCTACGT+AGG - chr3_2:21069252-21069271 None:intergenic 70.0%
GCCCAATGGCCCCCAAGGCT+AGG - chr3_2:21071771-21071790 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr3_2 gene 21068119 21075405 21068119 ID=Msa0398950;Name=Msa0398950
chr3_2 mRNA 21068119 21075405 21068119 ID=Msa0398950-mRNA-1;Parent=Msa0398950;Name=Msa0398950-mRNA-1;_AED=0.08;_eAED=0.08;_QI=95|1|1|1|1|1|9|349|358
chr3_2 exon 21068119 21068283 21068119 ID=Msa0398950-mRNA-1:exon:4582;Parent=Msa0398950-mRNA-1
chr3_2 exon 21071104 21071219 21071104 ID=Msa0398950-mRNA-1:exon:4583;Parent=Msa0398950-mRNA-1
chr3_2 exon 21071366 21071423 21071366 ID=Msa0398950-mRNA-1:exon:4584;Parent=Msa0398950-mRNA-1
chr3_2 exon 21071664 21071813 21071664 ID=Msa0398950-mRNA-1:exon:4585;Parent=Msa0398950-mRNA-1
chr3_2 exon 21072250 21072460 21072250 ID=Msa0398950-mRNA-1:exon:4586;Parent=Msa0398950-mRNA-1
chr3_2 exon 21073027 21073072 21073027 ID=Msa0398950-mRNA-1:exon:4587;Parent=Msa0398950-mRNA-1
chr3_2 exon 21074221 21074341 21074221 ID=Msa0398950-mRNA-1:exon:4588;Parent=Msa0398950-mRNA-1
chr3_2 exon 21074439 21074511 21074439 ID=Msa0398950-mRNA-1:exon:4589;Parent=Msa0398950-mRNA-1
chr3_2 exon 21074825 21075405 21074825 ID=Msa0398950-mRNA-1:exon:4590;Parent=Msa0398950-mRNA-1
chr3_2 five_prime_UTR 21068119 21068213 21068119 ID=Msa0398950-mRNA-1:five_prime_utr;Parent=Msa0398950-mRNA-1
chr3_2 CDS 21068214 21068283 21068214 ID=Msa0398950-mRNA-1:cds;Parent=Msa0398950-mRNA-1
chr3_2 CDS 21071104 21071219 21071104 ID=Msa0398950-mRNA-1:cds;Parent=Msa0398950-mRNA-1
chr3_2 CDS 21071366 21071423 21071366 ID=Msa0398950-mRNA-1:cds;Parent=Msa0398950-mRNA-1
chr3_2 CDS 21071664 21071813 21071664 ID=Msa0398950-mRNA-1:cds;Parent=Msa0398950-mRNA-1
chr3_2 CDS 21072250 21072460 21072250 ID=Msa0398950-mRNA-1:cds;Parent=Msa0398950-mRNA-1
chr3_2 CDS 21073027 21073072 21073027 ID=Msa0398950-mRNA-1:cds;Parent=Msa0398950-mRNA-1
chr3_2 CDS 21074221 21074341 21074221 ID=Msa0398950-mRNA-1:cds;Parent=Msa0398950-mRNA-1
chr3_2 CDS 21074439 21074511 21074439 ID=Msa0398950-mRNA-1:cds;Parent=Msa0398950-mRNA-1
chr3_2 CDS 21074825 21075056 21074825 ID=Msa0398950-mRNA-1:cds;Parent=Msa0398950-mRNA-1
chr3_2 three_prime_UTR 21075057 21075405 21075057 ID=Msa0398950-mRNA-1:three_prime_utr;Parent=Msa0398950-mRNA-1
Gene Sequence

>Msa0398950

ATGGCAGTTCAAAGCTCCATTTCCAGTAAACCACAAGCTCCGAACAACGTTTCTCACGACCATTTTTTCGTATGGAGGGAGTTTGTATGGGGAGCTGTTGCGGGTGCTTTTGGGGAAGGAATGATGCATCCGGTTGATACTATCAAAACACGAATACAAAGTCAAGCTATTCTAAATGGTGTTAAGAACCAGAAAGGCATATTGCAGATGGTGCGGTCTGTCTGGAAGGTCGATGGATTAAGAGGCTTTTACAGGGGTGTGGTACCTGGTGTTACTGGCTCTCTTGCTACTGGTGCAACATACTTTGGTGTCATAGAGTCAACTAAAAAGTGGATTGAAGATTCACATCCTAGCCTTGGGGGCCATTGGGCACATTTCATTGCTGGAGCTGTTGGAGATACACTTGGGTCTGTAGTATACGTTCCATGCGAAGTGATAAAGCAGCGCATGCAAGTTCAAGGCACAATTACATCCTGGAGTTCTACTGCAATGAAGAATGGCATTGCAATAAAACCTGGTGCAGAAATATATGATTATTATAAAGGGATGTTCCATGCAGGCAGCTCAATATGCAGAACACAGGGTTTAAAGGGTTTATATGCAGGATATTTGTCTACACTGGCAAGGGATGTACCATTTGCTGGCTTGATGGTTGTGTTCTATGAAGCTTTGAAAGATGCTACAGAATACGGGAAGAAAAGATGGATATCTAATCCAAATTGGCATGTTAACAATTCCGTTGAGGGATTGGTTTTAGGAGGATTGGCTGGTGGTCTCAGTGCATATCTCACGACACCTTTGGATGTCGTCAAAACTAGGCTGCAAGTTCAGGGTTCAACGTTGAGGTATAATGGTTGGTTGGATGCAATTTACAACATATGGGATAAGGAAGGCGTTAAGGGGATGTTTAGGGGCAGCGTCCCCAGAATTGCGTGGTACATTCCGGCTTCAGCGCTTACCTTTATGGCTGTGGAATTTCTCAGAGAAAATTTTAATGAAAGAGTGCCCAATGGTGGTTCGATCAATGTTGCTAGAGTATCAGTAGAAAAGAAGAAATCTTTGGAGGAGGCTAGTTAA
Protein sequence

>Msa0398950

MAVQSSISSKPQAPNNVSHDHFFVWREFVWGAVAGAFGEGMMHPVDTIKTRIQSQAILNGVKNQKGILQMVRSVWKVDGLRGFYRGVVPGVTGSLATGATYFGVIESTKKWIEDSHPSLGGHWAHFIAGAVGDTLGSVVYVPCEVIKQRMQVQGTITSWSSTAMKNGIAIKPGAEIYDYYKGMFHAGSSICRTQGLKGLYAGYLSTLARDVPFAGLMVVFYEALKDATEYGKKRWISNPNWHVNNSVEGLVLGGLAGGLSAYLTTPLDVVKTRLQVQGSTLRYNGWLDAIYNIWDKEGVKGMFRGSVPRIAWYIPASALTFMAVEFLRENFNERVPNGGSINVARVSVEKKKSLEEAS*