Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0461630 | XP_013460702.1 | 94.182 | 275 | 14 | 1 | 1 | 273 | 1 | 275 | 0.0 | 520 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0461630 | sp|Q9LHT0|TRNHF_ARATH | 68.093 | 257 | 82 | 0 | 12 | 268 | 6 | 262 | 8.30e-130 | 371 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0461630 | A0A072UZ65 | 94.182 | 275 | 14 | 1 | 1 | 273 | 1 | 275 | 0.0 | 520 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0028420 | Msa0461630 | 0.809887 | 1.515545e-50 | -8.615850e-47 |
| Msa0094850 | Msa0461630 | 0.801321 | 9.513088e-49 | -8.615850e-47 |
| Msa0134610 | Msa0461630 | 0.814156 | 1.778715e-51 | -8.615850e-47 |
| Msa0160830 | Msa0461630 | 0.821804 | 3.322662e-53 | -8.615850e-47 |
| Msa0168500 | Msa0461630 | 0.804546 | 2.051333e-49 | -8.615850e-47 |
| Msa0197420 | Msa0461630 | 0.807433 | 5.065816e-50 | -8.615850e-47 |
| Msa0199520 | Msa0461630 | 0.816462 | 5.462903e-52 | -8.615850e-47 |
| Msa0415870 | Msa0461630 | 0.803013 | 4.268338e-49 | -8.615850e-47 |
| Msa0450720 | Msa0461630 | 0.800741 | 1.250047e-48 | -8.615850e-47 |
| Msa0461630 | Msa0474730 | 0.803299 | 3.725461e-49 | -8.615850e-47 |
| Msa0461630 | Msa0475790 | 0.814176 | 1.760266e-51 | -8.615850e-47 |
| Msa0461630 | Msa0526420 | 0.821235 | 4.498416e-53 | -8.615850e-47 |
| Msa0461630 | Msa0527860 | 0.806731 | 7.135790e-50 | -8.615850e-47 |
| Msa0461630 | Msa0574890 | 0.812188 | 4.808331e-51 | -8.615850e-47 |
| Msa0461630 | Msa0582450 | 0.812296 | 4.553926e-51 | -8.615850e-47 |
| Msa0461630 | Msa0586190 | 0.810044 | 1.401860e-50 | -8.615850e-47 |
| Msa0461630 | Msa0597790 | 0.807354 | 5.265386e-50 | -8.615850e-47 |
| Msa0461630 | Msa0600930 | 0.806347 | 8.598678e-50 | -8.615850e-47 |
| Msa0461630 | Msa0614000 | 0.814584 | 1.430198e-51 | -8.615850e-47 |
| Msa0461630 | Msa0626450 | 0.807881 | 4.070345e-50 | -8.615850e-47 |
| Msa0461630 | Msa0626490 | 0.805896 | 1.069795e-49 | -8.615850e-47 |
| Msa0461630 | Msa0638480 | 0.832679 | 8.239010e-56 | -8.615850e-47 |
| Msa0461630 | Msa0643300 | 0.813619 | 2.335406e-51 | -8.615850e-47 |
| Msa0461630 | Msa0664600 | 0.806423 | 8.287638e-50 | -8.615850e-47 |
| Msa0461630 | Msa0669520 | 0.804053 | 2.597482e-49 | -8.615850e-47 |
| Msa0461630 | Msa0683570 | 0.832049 | 1.179756e-55 | -8.615850e-47 |
| Msa0461630 | Msa0727640 | 0.808284 | 3.340328e-50 | -8.615850e-47 |
| Msa0461630 | Msa0738040 | 0.824051 | 9.952165e-54 | -8.615850e-47 |
| Msa0461630 | Msa0785210 | 0.806481 | 8.057216e-50 | -8.615850e-47 |
| Msa0461630 | Msa0826130 | 0.803501 | 3.381942e-49 | -8.615850e-47 |
| Msa0461630 | Msa0861510 | 0.834466 | 2.949052e-56 | -8.615850e-47 |
| Msa0461630 | Msa0861530 | 0.824287 | 8.758835e-54 | -8.615850e-47 |
| Msa0461630 | Msa0861600 | 0.822197 | 2.694395e-53 | -8.615850e-47 |
| Msa0461630 | Msa0863010 | 0.803646 | 3.157143e-49 | -8.615850e-47 |
| Msa0461630 | Msa0869780 | 0.825794 | 3.859982e-54 | -8.615850e-47 |
| Msa0461630 | Msa0880780 | 0.810257 | 1.261304e-50 | -8.615850e-47 |
| Msa0461630 | Msa1005870 | 0.848920 | 4.506033e-60 | -8.615850e-47 |
| Msa0461630 | Msa1019430 | 0.800533 | 1.378595e-48 | -8.615850e-47 |
| Msa0461630 | Msa1043370 | 0.810077 | 1.379060e-50 | -8.615850e-47 |
| Msa0461630 | Msa1047980 | 0.831393 | 1.712214e-55 | -8.615850e-47 |
| Msa0461630 | Msa1092010 | 0.847098 | 1.433501e-59 | -8.615850e-47 |
| Msa0461630 | Msa1113340 | 0.806387 | 8.430786e-50 | -8.615850e-47 |
| Msa0461630 | Msa1124110 | 0.820970 | 5.176484e-53 | -8.615850e-47 |
| Msa0461630 | Msa1135390 | 0.825676 | 4.117623e-54 | -8.615850e-47 |
| Msa0461630 | Msa1140210 | 0.802143 | 6.451192e-49 | -8.615850e-47 |
| Msa0461630 | Msa1168950 | 0.807414 | 5.113736e-50 | -8.615850e-47 |
| Msa0461630 | Msa1169040 | 0.801713 | 7.907662e-49 | -8.615850e-47 |
| Msa0461630 | Msa1217210 | 0.806887 | 6.612208e-50 | -8.615850e-47 |
| Msa0461630 | Msa1218550 | 0.807387 | 5.183013e-50 | -8.615850e-47 |
| Msa0461630 | Msa1276660 | 0.800083 | 1.701997e-48 | -8.615850e-47 |
| Msa0461630 | Msa1374550 | 0.814269 | 1.679043e-51 | -8.615850e-47 |
| Msa0461630 | Msa1436570 | 0.808117 | 3.626307e-50 | -8.615850e-47 |
| Msa0461630 | Msa1446810 | 0.836208 | 1.070743e-56 | -8.615850e-47 |
| Msa0239190 | Msa0461630 | 0.810010 | 1.425466e-50 | -8.615850e-47 |
| Msa0264870 | Msa0461630 | 0.816638 | 4.988154e-52 | -8.615850e-47 |
| Msa0292400 | Msa0461630 | 0.823872 | 1.096239e-53 | -8.615850e-47 |
| Msa0300270 | Msa0461630 | 0.810008 | 1.427012e-50 | -8.615850e-47 |
| Msa0300320 | Msa0461630 | 0.813207 | 2.876247e-51 | -8.615850e-47 |
| Msa0300690 | Msa0461630 | 0.809058 | 2.282940e-50 | -8.615850e-47 |
| Msa0316810 | Msa0461630 | 0.804509 | 2.088103e-49 | -8.615850e-47 |
| Msa0339500 | Msa0461630 | 0.822759 | 1.994617e-53 | -8.615850e-47 |
| Msa0363200 | Msa0461630 | 0.819332 | 1.227702e-52 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0461630 | MtrunA17_Chr3g0112141 | 94.182 | 275 | 14 | 1 | 1 | 273 | 1 | 275 | 0.0 | 520 |
| Msa0461630 | MtrunA17_Chr3g0112171 | 86.296 | 270 | 37 | 0 | 1 | 270 | 1 | 270 | 1.77e-170 | 471 |
| Msa0461630 | MtrunA17_Chr3g0112151 | 83.333 | 264 | 44 | 0 | 1 | 264 | 72 | 335 | 1.52e-164 | 459 |
| Msa0461630 | MtrunA17_Chr3g0112261 | 73.745 | 259 | 68 | 0 | 12 | 270 | 16 | 274 | 5.15e-145 | 407 |
| Msa0461630 | MtrunA17_Chr3g0112271 | 72.692 | 260 | 71 | 0 | 11 | 270 | 13 | 272 | 3.86e-141 | 397 |
| Msa0461630 | MtrunA17_Chr4g0032141 | 60.853 | 258 | 101 | 0 | 12 | 269 | 53 | 310 | 2.04e-119 | 344 |
| Msa0461630 | MtrunA17_Chr7g0239481 | 57.034 | 263 | 109 | 1 | 1 | 259 | 1 | 263 | 6.85e-105 | 305 |
| Msa0461630 | MtrunA17_Chr7g0239451 | 57.308 | 260 | 107 | 1 | 6 | 261 | 7 | 266 | 8.03e-103 | 300 |
| Msa0461630 | MtrunA17_Chr7g0239491 | 57.812 | 256 | 105 | 2 | 9 | 261 | 9 | 264 | 1.93e-100 | 294 |
| Msa0461630 | MtrunA17_Chr4g0032181 | 59.483 | 232 | 94 | 0 | 31 | 262 | 17 | 248 | 2.37e-100 | 293 |
| Msa0461630 | MtrunA17_Chr7g0239501 | 57.143 | 259 | 107 | 2 | 6 | 260 | 7 | 265 | 8.07e-100 | 292 |
| Msa0461630 | MtrunA17_Chr7g0239511 | 55.212 | 259 | 112 | 1 | 6 | 260 | 7 | 265 | 4.10e-99 | 291 |
| Msa0461630 | MtrunA17_Chr7g0239461 | 49.807 | 259 | 78 | 3 | 6 | 261 | 7 | 216 | 6.36e-77 | 233 |
| Msa0461630 | MtrunA17_Chr4g0075531 | 33.333 | 249 | 155 | 6 | 15 | 259 | 7 | 248 | 1.34e-34 | 125 |
| Msa0461630 | MtrunA17_Chr3g0112161 | 59.292 | 113 | 16 | 2 | 123 | 234 | 1 | 84 | 3.55e-32 | 114 |
| Msa0461630 | MtrunA17_Chr3g0112321 | 57.576 | 99 | 26 | 2 | 147 | 242 | 2 | 87 | 4.09e-31 | 111 |
| Msa0461630 | MtrunA17_Chr7g0259531 | 33.463 | 257 | 151 | 10 | 15 | 259 | 11 | 259 | 4.72e-29 | 111 |
| Msa0461630 | MtrunA17_Chr7g0259521 | 32.937 | 252 | 159 | 8 | 15 | 259 | 6 | 254 | 7.96e-29 | 110 |
| Msa0461630 | MtrunA17_Chr3g0122901 | 30.328 | 244 | 159 | 5 | 21 | 259 | 81 | 318 | 1.75e-27 | 108 |
| Msa0461630 | MtrunA17_Chr7g0244061 | 31.095 | 283 | 157 | 8 | 8 | 261 | 22 | 295 | 1.87e-26 | 105 |
| Msa0461630 | MtrunA17_Chr7g0252031 | 30.996 | 271 | 165 | 8 | 9 | 261 | 22 | 288 | 1.21e-25 | 102 |
| Msa0461630 | MtrunA17_Chr4g0028911 | 29.615 | 260 | 170 | 9 | 15 | 264 | 11 | 267 | 8.66e-24 | 97.4 |
| Msa0461630 | MtrunA17_Chr4g0028921 | 29.231 | 260 | 171 | 9 | 15 | 264 | 11 | 267 | 3.16e-23 | 95.9 |
| Msa0461630 | MtrunA17_Chr7g0268591 | 28.302 | 265 | 175 | 7 | 7 | 261 | 26 | 285 | 2.74e-22 | 93.6 |
| Msa0461630 | MtrunA17_Chr4g0044131 | 29.572 | 257 | 161 | 9 | 15 | 260 | 8 | 255 | 3.71e-21 | 90.1 |
| Msa0461630 | MtrunA17_Chr4g0040371 | 30.769 | 260 | 161 | 10 | 15 | 261 | 19 | 272 | 1.95e-20 | 88.6 |
| Msa0461630 | MtrunA17_Chr8g0357481 | 27.863 | 262 | 162 | 7 | 15 | 259 | 14 | 265 | 2.12e-19 | 85.9 |
| Msa0461630 | MtrunA17_Chr4g0026001 | 29.615 | 260 | 164 | 10 | 15 | 264 | 14 | 264 | 2.34e-19 | 85.1 |
| Msa0461630 | MtrunA17_Chr1g0182511 | 29.688 | 256 | 163 | 9 | 15 | 259 | 14 | 263 | 2.50e-19 | 85.1 |
| Msa0461630 | MtrunA17_Chr4g0074511 | 28.090 | 267 | 180 | 6 | 6 | 263 | 31 | 294 | 3.86e-19 | 85.1 |
| Msa0461630 | MtrunA17_Chr3g0084871 | 30.216 | 278 | 168 | 11 | 1 | 260 | 1 | 270 | 2.92e-18 | 82.4 |
| Msa0461630 | MtrunA17_Chr6g0459261 | 28.571 | 266 | 172 | 10 | 5 | 259 | 15 | 273 | 3.16e-18 | 82.0 |
| Msa0461630 | MtrunA17_Chr0c30g0494101 | 28.464 | 267 | 175 | 8 | 6 | 262 | 31 | 291 | 1.44e-17 | 80.5 |
| Msa0461630 | MtrunA17_Chr6g0459351 | 29.478 | 268 | 167 | 10 | 5 | 259 | 3 | 261 | 1.66e-17 | 80.1 |
| Msa0461630 | MtrunA17_Chr6g0459301 | 28.679 | 265 | 169 | 10 | 7 | 259 | 6 | 262 | 1.75e-17 | 80.1 |
| Msa0461630 | MtrunA17_Chr2g0324021 | 27.237 | 257 | 175 | 7 | 11 | 260 | 2 | 253 | 3.11e-17 | 79.3 |
| Msa0461630 | MtrunA17_Chr7g0266981 | 29.434 | 265 | 151 | 11 | 15 | 260 | 13 | 260 | 5.40e-17 | 78.6 |
| Msa0461630 | MtrunA17_Chr8g0381191 | 31.683 | 202 | 111 | 5 | 17 | 202 | 47 | 237 | 6.12e-17 | 79.0 |
| Msa0461630 | MtrunA17_Chr7g0267011 | 30.108 | 186 | 123 | 4 | 15 | 197 | 8 | 189 | 7.11e-17 | 77.0 |
| Msa0461630 | MtrunA17_Chr4g0044111 | 29.434 | 265 | 151 | 11 | 15 | 260 | 13 | 260 | 9.05e-17 | 78.2 |
| Msa0461630 | MtrunA17_Chr4g0025981 | 27.203 | 261 | 172 | 8 | 16 | 264 | 42 | 296 | 1.84e-16 | 77.8 |
| Msa0461630 | MtrunA17_Chr7g0272961 | 28.125 | 256 | 173 | 7 | 15 | 262 | 40 | 292 | 2.46e-16 | 77.0 |
| Msa0461630 | MtrunA17_Chr7g0267001 | 27.451 | 255 | 151 | 9 | 15 | 260 | 8 | 237 | 3.73e-16 | 76.3 |
| Msa0461630 | MtrunA17_Chr4g0025971 | 26.255 | 259 | 174 | 9 | 15 | 264 | 14 | 264 | 4.18e-16 | 76.3 |
| Msa0461630 | MtrunA17_Chr6g0459281 | 27.737 | 274 | 176 | 10 | 5 | 265 | 3 | 267 | 1.63e-15 | 74.7 |
| Msa0461630 | MtrunA17_Chr7g0270441 | 28.676 | 272 | 172 | 10 | 11 | 269 | 2 | 264 | 1.88e-15 | 74.3 |
| Msa0461630 | MtrunA17_Chr6g0459271 | 27.820 | 266 | 174 | 8 | 5 | 259 | 3 | 261 | 3.42e-15 | 73.6 |
| Msa0461630 | MtrunA17_Chr6g0459331 | 27.273 | 264 | 178 | 8 | 5 | 259 | 3 | 261 | 5.42e-15 | 73.2 |
| Msa0461630 | MtrunA17_Chr7g0266891 | 27.799 | 259 | 163 | 10 | 15 | 260 | 7 | 254 | 4.83e-14 | 70.5 |
| Msa0461630 | MtrunA17_Chr1g0191751 | 26.459 | 257 | 178 | 6 | 15 | 263 | 101 | 354 | 8.25e-14 | 70.5 |
| Msa0461630 | MtrunA17_Chr7g0270451 | 26.616 | 263 | 185 | 6 | 12 | 269 | 3 | 262 | 8.64e-14 | 69.7 |
| Msa0461630 | MtrunA17_Chr3g0131521 | 32.653 | 147 | 97 | 2 | 8 | 154 | 25 | 169 | 2.82e-13 | 68.6 |
| Msa0461630 | MtrunA17_Chr1g0171831 | 24.898 | 245 | 168 | 10 | 21 | 251 | 20 | 262 | 3.54e-13 | 67.8 |
| Msa0461630 | MtrunA17_Chr8g0355281 | 27.273 | 187 | 129 | 4 | 15 | 195 | 69 | 254 | 3.69e-13 | 68.6 |
| Msa0461630 | MtrunA17_Chr3g0123251 | 27.723 | 202 | 123 | 4 | 17 | 204 | 53 | 245 | 4.60e-13 | 68.2 |
| Msa0461630 | MtrunA17_Chr4g0038121 | 25.926 | 297 | 179 | 9 | 15 | 273 | 91 | 384 | 1.43e-11 | 63.9 |
| Msa0461630 | MtrunA17_Chr7g0249571 | 26.776 | 183 | 124 | 4 | 22 | 197 | 45 | 224 | 2.41e-11 | 63.2 |
| Msa0461630 | MtrunA17_Chr4g0076931 | 27.219 | 169 | 120 | 2 | 19 | 184 | 10 | 178 | 5.31e-11 | 61.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0461630 | AT5G06060.1 | 68.093 | 257 | 82 | 0 | 12 | 268 | 6 | 262 | 8.43e-131 | 371 |
| Msa0461630 | AT2G29150.1 | 60.769 | 260 | 101 | 1 | 5 | 264 | 6 | 264 | 1.38e-115 | 333 |
| Msa0461630 | AT2G29290.2 | 61.479 | 257 | 97 | 1 | 12 | 266 | 4 | 260 | 6.67e-115 | 331 |
| Msa0461630 | AT2G29260.1 | 61.176 | 255 | 99 | 0 | 12 | 266 | 65 | 319 | 7.13e-114 | 330 |
| Msa0461630 | AT2G29350.1 | 60.000 | 265 | 103 | 2 | 1 | 264 | 1 | 263 | 1.13e-113 | 328 |
| Msa0461630 | AT2G29360.1 | 58.868 | 265 | 108 | 1 | 1 | 264 | 1 | 265 | 1.47e-111 | 323 |
| Msa0461630 | AT1G07440.1 | 58.555 | 263 | 106 | 2 | 6 | 266 | 3 | 264 | 1.62e-110 | 320 |
| Msa0461630 | AT2G29370.1 | 56.604 | 265 | 114 | 1 | 1 | 264 | 1 | 265 | 5.58e-107 | 311 |
| Msa0461630 | AT2G29340.2 | 58.301 | 259 | 106 | 1 | 12 | 268 | 4 | 262 | 1.23e-106 | 310 |
| Msa0461630 | AT2G29340.1 | 58.755 | 257 | 104 | 1 | 12 | 266 | 4 | 260 | 3.54e-106 | 310 |
| Msa0461630 | AT2G30670.1 | 58.498 | 253 | 105 | 0 | 12 | 264 | 4 | 256 | 3.13e-105 | 306 |
| Msa0461630 | AT1G07450.1 | 58.893 | 253 | 103 | 1 | 12 | 264 | 5 | 256 | 5.81e-105 | 306 |
| Msa0461630 | AT2G29330.1 | 59.690 | 258 | 100 | 3 | 12 | 266 | 4 | 260 | 7.89e-105 | 305 |
| Msa0461630 | AT2G29310.1 | 57.708 | 253 | 107 | 0 | 12 | 264 | 4 | 256 | 1.27e-102 | 300 |
| Msa0461630 | AT2G29290.1 | 60.338 | 237 | 92 | 1 | 32 | 266 | 7 | 243 | 2.48e-102 | 298 |
| Msa0461630 | AT2G29320.1 | 57.977 | 257 | 105 | 2 | 13 | 266 | 11 | 267 | 4.41e-101 | 296 |
| Msa0461630 | AT2G29300.1 | 56.202 | 258 | 110 | 2 | 12 | 266 | 4 | 261 | 1.02e-99 | 292 |
| Msa0461630 | AT2G29300.2 | 56.400 | 250 | 108 | 1 | 12 | 260 | 4 | 253 | 1.04e-96 | 286 |
| Msa0461630 | AT2G29350.3 | 59.735 | 226 | 88 | 2 | 40 | 264 | 2 | 225 | 2.49e-95 | 280 |
| Msa0461630 | AT2G29320.2 | 56.904 | 239 | 100 | 2 | 31 | 266 | 11 | 249 | 2.59e-90 | 268 |
| Msa0461630 | AT2G29310.2 | 56.410 | 234 | 102 | 0 | 31 | 264 | 21 | 254 | 4.64e-90 | 268 |
| Msa0461630 | AT2G29350.2 | 59.709 | 206 | 83 | 0 | 1 | 206 | 1 | 206 | 8.39e-88 | 261 |
| Msa0461630 | AT2G29340.3 | 58.247 | 194 | 81 | 0 | 12 | 205 | 4 | 197 | 5.69e-79 | 238 |
| Msa0461630 | AT2G29340.4 | 58.247 | 194 | 81 | 0 | 12 | 205 | 4 | 197 | 5.69e-79 | 238 |
| Msa0461630 | AT2G29310.3 | 57.949 | 195 | 82 | 0 | 12 | 206 | 4 | 198 | 1.90e-77 | 234 |
| Msa0461630 | AT2G29320.3 | 58.639 | 191 | 78 | 1 | 13 | 202 | 11 | 201 | 2.11e-75 | 229 |
| Msa0461630 | AT1G07440.2 | 56.886 | 167 | 72 | 0 | 6 | 172 | 3 | 169 | 1.44e-65 | 202 |
| Msa0461630 | AT2G29310.4 | 56.250 | 176 | 77 | 0 | 31 | 206 | 21 | 196 | 9.58e-65 | 201 |
| Msa0461630 | AT2G29170.1 | 59.804 | 102 | 40 | 1 | 1 | 101 | 1 | 102 | 5.19e-35 | 122 |
| Msa0461630 | AT4G05530.1 | 33.740 | 246 | 158 | 5 | 15 | 259 | 9 | 250 | 2.72e-34 | 125 |
| Msa0461630 | AT5G18210.1 | 33.716 | 261 | 158 | 8 | 10 | 259 | 3 | 259 | 2.06e-31 | 117 |
| Msa0461630 | AT3G03980.1 | 32.046 | 259 | 159 | 7 | 15 | 259 | 14 | 269 | 1.75e-29 | 112 |
| Msa0461630 | AT4G13180.1 | 33.083 | 266 | 163 | 10 | 4 | 259 | 1 | 261 | 4.11e-29 | 111 |
| Msa0461630 | AT1G24360.1 | 30.204 | 245 | 158 | 6 | 21 | 259 | 80 | 317 | 1.81e-27 | 108 |
| Msa0461630 | AT5G18210.2 | 32.567 | 261 | 148 | 9 | 10 | 259 | 3 | 246 | 1.06e-26 | 105 |
| Msa0461630 | AT3G04000.1 | 33.086 | 269 | 160 | 9 | 6 | 258 | 5 | 269 | 5.83e-24 | 98.2 |
| Msa0461630 | AT3G55310.1 | 28.295 | 258 | 174 | 7 | 15 | 263 | 17 | 272 | 7.92e-23 | 95.1 |
| Msa0461630 | AT3G55290.1 | 28.295 | 258 | 174 | 7 | 15 | 263 | 18 | 273 | 1.65e-22 | 94.4 |
| Msa0461630 | AT3G55290.2 | 28.295 | 258 | 174 | 7 | 15 | 263 | 17 | 272 | 1.67e-22 | 94.4 |
| Msa0461630 | AT1G54870.1 | 31.128 | 257 | 166 | 6 | 15 | 263 | 82 | 335 | 1.14e-21 | 93.2 |
| Msa0461630 | AT1G54870.2 | 31.128 | 257 | 166 | 6 | 15 | 263 | 84 | 337 | 1.19e-21 | 92.8 |
| Msa0461630 | AT1G63380.3 | 27.473 | 273 | 186 | 6 | 1 | 263 | 1 | 271 | 1.36e-21 | 92.0 |
| Msa0461630 | AT3G46170.1 | 28.682 | 258 | 173 | 7 | 15 | 263 | 26 | 281 | 1.44e-21 | 92.0 |
| Msa0461630 | AT3G26760.1 | 28.839 | 267 | 170 | 7 | 8 | 260 | 30 | 290 | 1.66e-21 | 92.0 |
| Msa0461630 | AT1G62610.3 | 27.106 | 273 | 187 | 6 | 1 | 263 | 1 | 271 | 1.79e-21 | 91.7 |
| Msa0461630 | AT1G63380.1 | 27.799 | 259 | 175 | 6 | 15 | 263 | 17 | 273 | 1.91e-21 | 91.7 |
| Msa0461630 | AT1G63380.4 | 27.799 | 259 | 175 | 6 | 15 | 263 | 19 | 275 | 2.16e-21 | 91.3 |
| Msa0461630 | AT1G62610.2 | 27.413 | 259 | 176 | 6 | 15 | 263 | 13 | 269 | 2.33e-21 | 91.3 |
| Msa0461630 | AT1G62610.1 | 27.413 | 259 | 176 | 6 | 15 | 263 | 14 | 270 | 2.35e-21 | 91.3 |
| Msa0461630 | AT1G62610.4 | 27.413 | 259 | 176 | 6 | 15 | 263 | 19 | 275 | 2.37e-21 | 91.3 |
| Msa0461630 | AT1G63380.2 | 27.799 | 259 | 175 | 6 | 15 | 263 | 22 | 278 | 2.41e-21 | 91.3 |
| Msa0461630 | AT2G17845.1 | 27.481 | 262 | 176 | 7 | 15 | 264 | 47 | 306 | 6.41e-21 | 90.5 |
| Msa0461630 | AT2G47130.1 | 29.688 | 256 | 169 | 7 | 11 | 260 | 2 | 252 | 7.36e-20 | 86.7 |
| Msa0461630 | AT2G47120.1 | 28.195 | 266 | 171 | 11 | 11 | 267 | 2 | 256 | 3.20e-19 | 85.1 |
| Msa0461630 | AT2G47120.2 | 28.244 | 262 | 168 | 11 | 15 | 267 | 7 | 257 | 5.18e-19 | 84.3 |
| Msa0461630 | AT3G05260.1 | 30.469 | 256 | 166 | 6 | 15 | 262 | 37 | 288 | 8.23e-19 | 84.3 |
| Msa0461630 | AT1G52340.1 | 30.451 | 266 | 157 | 10 | 15 | 260 | 18 | 275 | 4.15e-18 | 82.4 |
| Msa0461630 | AT3G12800.1 | 25.490 | 255 | 178 | 6 | 15 | 259 | 10 | 262 | 5.86e-18 | 82.0 |
| Msa0461630 | AT3G51680.1 | 26.692 | 266 | 173 | 7 | 15 | 260 | 32 | 295 | 6.43e-17 | 79.3 |
| Msa0461630 | AT3G42960.1 | 29.845 | 258 | 157 | 9 | 20 | 261 | 13 | 262 | 9.12e-17 | 78.6 |
| Msa0461630 | AT3G26770.1 | 27.132 | 258 | 173 | 5 | 15 | 261 | 41 | 294 | 6.12e-16 | 76.6 |
| Msa0461630 | AT3G29260.1 | 28.405 | 257 | 171 | 7 | 11 | 260 | 2 | 252 | 1.27e-15 | 75.1 |
| Msa0461630 | AT4G03140.1 | 25.391 | 256 | 177 | 5 | 15 | 260 | 78 | 329 | 5.54e-15 | 74.3 |
| Msa0461630 | AT5G04900.1 | 30.435 | 184 | 120 | 5 | 18 | 195 | 80 | 261 | 1.37e-13 | 70.1 |
| Msa0461630 | AT1G49670.1 | 28.910 | 211 | 129 | 7 | 17 | 211 | 6 | 211 | 4.97e-13 | 69.3 |
| Msa0461630 | AT1G49670.2 | 28.910 | 211 | 129 | 7 | 17 | 211 | 6 | 211 | 5.33e-13 | 69.3 |
| Msa0461630 | AT4G13250.1 | 26.172 | 256 | 150 | 8 | 21 | 243 | 165 | 414 | 1.31e-12 | 67.8 |
| Msa0461630 | AT3G06060.1 | 26.768 | 198 | 138 | 2 | 9 | 203 | 31 | 224 | 2.79e-12 | 66.2 |
| Msa0461630 | AT3G06060.2 | 26.768 | 198 | 138 | 2 | 9 | 203 | 48 | 241 | 2.80e-12 | 66.2 |
| Msa0461630 | AT1G67730.1 | 25.463 | 216 | 128 | 6 | 5 | 204 | 45 | 243 | 3.32e-12 | 65.9 |
| Msa0461630 | AT1G10310.1 | 30.539 | 167 | 113 | 3 | 19 | 184 | 19 | 183 | 9.04e-12 | 63.9 |
| Msa0461630 | AT5G65205.1 | 28.090 | 178 | 121 | 4 | 21 | 197 | 12 | 183 | 6.00e-11 | 62.0 |
Find 65 sgRNAs with CRISPR-Local
Find 346 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ACCTTTACACGCTGCGTATA+TGG | 0.258151 | 3_3:+59998681 | None:intergenic |
| AATGGGCAAAAGACAATATA+AGG | 0.317797 | 3_3:-59998519 | Msa0461630:CDS |
| GGACAAGTTATTTCTGTTGA+TGG | 0.321935 | 3_3:-59998146 | Msa0461630:CDS |
| TATCCTCTTCTTAAAGAATC+TGG | 0.324082 | 3_3:-59998763 | Msa0461630:CDS |
| GTAGAGGAACTTGCTGAGTT+TGG | 0.369806 | 3_3:-59999669 | Msa0461630:CDS |
| AAAGGGTCACATACTCTTGC+TGG | 0.388378 | 3_3:-59997824 | Msa0461630:three_prime_UTR |
| GGAAGACACTTCATGTGTTT+CGG | 0.394739 | 3_3:+59998211 | None:intergenic |
| TCCGTTGTATACTCAATTGT+TGG | 0.398000 | 3_3:+59998847 | None:intergenic |
| CTATAGTGTACACTTGTTCT+AGG | 0.398286 | 3_3:-59999644 | Msa0461630:CDS |
| CTTCTTAAAGAATCTGGAAA+TGG | 0.409640 | 3_3:-59998757 | Msa0461630:CDS |
| AGAAATAGTCTTATGTTCTA+TGG | 0.413199 | 3_3:+59997979 | None:intergenic |
| CTCGTCACCGGCGGAACTCG+TGG | 0.413917 | 3_3:-59999708 | Msa0461630:CDS |
| GATATGTCAGTTGGCATAGA+TGG | 0.418094 | 3_3:+59998782 | None:intergenic |
| TATGTAGTATCTGTATCATT+AGG | 0.427761 | 3_3:+59997872 | None:intergenic |
| GATGGAGGATTTACTGCAAA+TGG | 0.433393 | 3_3:-59998128 | Msa0461630:CDS |
| AAAATTGATGAGTATTAACT+TGG | 0.439582 | 3_3:-59998815 | Msa0461630:CDS |
| ATCACTTCTTATGATCATGC+TGG | 0.440165 | 3_3:+59998097 | None:intergenic |
| ATTCACTCGATTAAGAATAG+TGG | 0.441506 | 3_3:-59997795 | Msa0461630:three_prime_UTR |
| CATGATGAGATGCTTGATAA+AGG | 0.466551 | 3_3:-59997902 | Msa0461630:three_prime_UTR |
| TATCTCGTACACCGATAAAA+CGG | 0.472351 | 3_3:-59998238 | Msa0461630:CDS |
| TTGAATGAGTGGAAGGAGAA+AGG | 0.480371 | 3_3:-59999597 | Msa0461630:CDS |
| TCTCTGACAAACGTAGGTTC+TGG | 0.495804 | 3_3:-59998706 | Msa0461630:CDS |
| AACATTACATAATCGTTAAG+TGG | 0.496146 | 3_3:+59998463 | None:intergenic |
| TGAGCTTAGGTAAACAATGT+TGG | 0.501292 | 3_3:-59998886 | Msa0461630:intron |
| TTTCCAGATTCTTTAAGAAG+AGG | 0.503369 | 3_3:+59998760 | None:intergenic |
| TTGCAAGTGGAAAGCTCAAA+GGG | 0.506249 | 3_3:-59997841 | Msa0461630:three_prime_UTR |
| ACCGGCGGAACTCGTGGGAT+CGG | 0.517357 | 3_3:-59999702 | Msa0461630:CDS |
| AATAACTTGTCCAGTGATGT+AGG | 0.517499 | 3_3:+59998157 | None:intergenic |
| TTCTCAGTGTTAGCAAGATA+AGG | 0.518622 | 3_3:-59999805 | Msa0461630:five_prime_UTR |
| ACCATATACGCAGCGTGTAA+AGG | 0.519622 | 3_3:-59998682 | Msa0461630:intron |
| CCAGCTGCTTCCTACATCAC+TGG | 0.520639 | 3_3:-59998167 | Msa0461630:CDS |
| TCACTTCTTATGATCATGCT+GGG | 0.528359 | 3_3:+59998098 | None:intergenic |
| CTTGCAAGTGGAAAGCTCAA+AGG | 0.529045 | 3_3:-59997842 | Msa0461630:three_prime_UTR |
| AACACATGAAGTGTCTTCCT+TGG | 0.534095 | 3_3:-59998207 | Msa0461630:CDS |
| ACCGATCCCACGAGTTCCGC+CGG | 0.539004 | 3_3:+59999701 | None:intergenic |
| ACATATGATATTCTTGCAAG+TGG | 0.540608 | 3_3:-59997854 | Msa0461630:three_prime_UTR |
| TAAGAAGAGGATATGTCAGT+TGG | 0.546406 | 3_3:+59998773 | None:intergenic |
| CAAGTTATTTCTGTTGATGG+AGG | 0.549415 | 3_3:-59998143 | Msa0461630:CDS |
| GGATTCACAGCTCTCGTCAC+CGG | 0.550668 | 3_3:-59999720 | Msa0461630:CDS |
| TCTCCTTGTTAATCATCTGA+AGG | 0.552677 | 3_3:-59997935 | Msa0461630:three_prime_UTR |
| GACTTCTTCTTCTCAAAGAG+AGG | 0.564516 | 3_3:-59999544 | Msa0461630:CDS |
| AAGAGAGGAGCTTGTTCGAA+AGG | 0.571197 | 3_3:-59999529 | Msa0461630:CDS |
| AAGCTCAAGATGGTCCCTCA+AGG | 0.573784 | 3_3:-59999742 | Msa0461630:CDS |
| TCGTCACCGGCGGAACTCGT+GGG | 0.574228 | 3_3:-59999707 | Msa0461630:CDS |
| GAGAGCTGTGAATCCCTTGA+GGG | 0.579284 | 3_3:+59999728 | None:intergenic |
| CCACAGTGTACACTTGCTCT+AGG | 0.579593 | 3_3:-60004558 | None:intergenic |
| AGAGGAGCTTGTTCGAAAGG+TGG | 0.587374 | 3_3:-59999526 | Msa0461630:CDS |
| CCAGTGATGTAGGAAGCAGC+TGG | 0.588298 | 3_3:+59998167 | None:intergenic |
| AGCTCAAGATGGTCCCTCAA+GGG | 0.601552 | 3_3:-59999741 | Msa0461630:CDS |
| GATGATTAACAAGGAGACAC+AGG | 0.610429 | 3_3:+59997941 | None:intergenic |
| AGGAAGCAGCTGGCAGACAA+AGG | 0.611292 | 3_3:+59998177 | None:intergenic |
| CGAGAGCTGTGAATCCCTTG+AGG | 0.617629 | 3_3:+59999727 | None:intergenic |
| ACAGTAGCAGAAGCTCAAGA+TGG | 0.618803 | 3_3:-59999752 | Msa0461630:CDS |
| CAGACAAAGGAAAGCTACCA+AGG | 0.625310 | 3_3:+59998190 | None:intergenic |
| TTCACAGCTCTCGTCACCGG+CGG | 0.631222 | 3_3:-59999717 | Msa0461630:CDS |
| TGAATGAACGCTTGAATGAG+TGG | 0.642583 | 3_3:-59999608 | Msa0461630:CDS |
| TGAACGCTTGAATGAGTGGA+AGG | 0.643639 | 3_3:-59999604 | Msa0461630:CDS |
| AGACCTTCAGATGATTAACA+AGG | 0.652445 | 3_3:+59997932 | None:intergenic |
| CACTTGTTCTAGGAATGAAG+AGG | 0.665255 | 3_3:-59999634 | Msa0461630:CDS |
| ACCAACAATTGAGTATACAA+CGG | 0.674590 | 3_3:-59998848 | Msa0461630:CDS |
| GTTGCATCTCTGACAAACGT+AGG | 0.677603 | 3_3:-59998712 | Msa0461630:CDS |
| ACAATGTTGGAACAAATGTG+AGG | 0.690959 | 3_3:-59998873 | Msa0461630:CDS |
| GTTTGTCAGAGATGCAACAG+AGG | 0.693930 | 3_3:+59998717 | None:intergenic |
| GATCGGTCATGCTATCGTAG+AGG | 0.705413 | 3_3:-59999685 | Msa0461630:CDS |
| GGAGCAACTGTGTTGCACCG+TGG | 0.740002 | 3_3:-59998498 | Msa0461630:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAAAATATTAAAAAATTA+TGG | - | chr3_3:59998470-59998489 | Msa0461630:intron | 0.0% |
| !! | AATAAATAAATAAATAAATT+GGG | + | chr3_3:60001749-60001768 | None:intergenic | 0.0% |
| !! | AAATAAATAAATAAATAAAT+TGG | + | chr3_3:60001750-60001769 | None:intergenic | 0.0% |
| !!! | CAAAAAAAATTTATAGTTTT+TGG | - | chr3_3:59998312-59998331 | Msa0461630:intron | 10.0% |
| !!! | ATTTTTTTATTATATAACTG+GGG | + | chr3_3:59998407-59998426 | None:intergenic | 10.0% |
| !! | AAGAAAAAATTAAAAAATTC+TGG | - | chr3_3:59998695-59998714 | Msa0461630:CDS | 10.0% |
| !!! | AAAAAAAATTCGAAATTTTT+TGG | - | chr3_3:59998825-59998844 | Msa0461630:CDS | 10.0% |
| !!! | TGAAATTTTAATAAAAATTC+TGG | + | chr3_3:59999268-59999287 | None:intergenic | 10.0% |
| !! | TCTAAAAAAAATTAAAATTC+TGG | + | chr3_3:59999306-59999325 | None:intergenic | 10.0% |
| !!! | CAAATTTTTTTTATAGTTTT+TGG | + | chr3_3:59999927-59999946 | None:intergenic | 10.0% |
| !!! | AACTATAAATTTTTTTTGCA+GGG | + | chr3_3:59998310-59998329 | None:intergenic | 15.0% |
| !!! | AAACTATAAATTTTTTTTGC+AGG | + | chr3_3:59998311-59998330 | None:intergenic | 15.0% |
| !! | TTTGGAAAAAATTAAAATTC+TGG | - | chr3_3:59998843-59998862 | Msa0461630:CDS | 15.0% |
| !! | TTTATTTCCAAAAAAATTTC+CGG | - | chr3_3:59998927-59998946 | Msa0461630:intron | 15.0% |
| !!! | ATTTTTGTGTATTTATAAAC+CGG | - | chr3_3:59999069-59999088 | Msa0461630:intron | 15.0% |
| !! | TATTTATAAATCGAGAATAA+GGG | - | chr3_3:59999103-59999122 | Msa0461630:intron | 15.0% |
| !! | ACTATAAAAAAAAAATTTGC+AGG | - | chr3_3:59999806-59999825 | Msa0461630:five_prime_UTR | 15.0% |
| !! | CTATAAAAAAAAAATTTGCA+GGG | - | chr3_3:59999807-59999826 | Msa0461630:five_prime_UTR | 15.0% |
| !! | AAACTATAAAAAAAAATTGC+AGG | - | chr3_3:59999867-59999886 | Msa0461630:intron | 15.0% |
| !! | AACTATAAAAAAAAATTGCA+GGG | - | chr3_3:59999868-59999887 | Msa0461630:intron | 15.0% |
| !! | AAACTATAAAAAAAATTTGC+AGG | - | chr3_3:59999928-59999947 | Msa0461630:intron | 15.0% |
| !! | AACTATAAAAAAAATTTGCA+GGG | - | chr3_3:59999929-59999948 | Msa0461630:intron | 15.0% |
| !! | TGATAAATACAATACAAATT+CGG | + | chr3_3:60000004-60000023 | None:intergenic | 15.0% |
| !! | ATTTAGAAAACAAAGATAAA+TGG | + | chr3_3:60001613-60001632 | None:intergenic | 15.0% |
| !!! | CTAAAAATGATCTATTTTTA+TGG | - | chr3_3:60001717-60001736 | Msa0461630:intron | 15.0% |
| !! | AAGAATAGATGTTATAAATA+AGG | - | chr3_3:60001844-60001863 | Msa0461630:intron | 15.0% |
| !! | AGAATAGATGTTATAAATAA+GGG | - | chr3_3:60001845-60001864 | Msa0461630:intron | 15.0% |
| !! | GAAAACGAAATATATAGAAA+AGG | + | chr3_3:59997967-59997986 | None:intergenic | 20.0% |
| !! | ACATCAACATAATATAGAAA+CGG | + | chr3_3:59997989-59998008 | None:intergenic | 20.0% |
| !! | TACTTTCTATAAGAATTTGT+AGG | - | chr3_3:59998235-59998254 | Msa0461630:CDS | 20.0% |
| !!! | ATTCTGGAAAAATGAAATTT+TGG | - | chr3_3:59998859-59998878 | Msa0461630:CDS | 20.0% |
| !! | TTATTTCCAAAAAAATTTCC+GGG | - | chr3_3:59998928-59998947 | Msa0461630:intron | 20.0% |
| !! | TTATAAATACACAAAATTCC+CGG | + | chr3_3:59998949-59998968 | None:intergenic | 20.0% |
| !! | TATTTATAAACCGAGAATAA+GGG | - | chr3_3:59998960-59998979 | Msa0461630:intron | 20.0% |
| !!! | TTTTCATTAGTATTTTTTCC+AGG | - | chr3_3:59999045-59999064 | Msa0461630:intron | 20.0% |
| !! | TATAAATACACAAAAATTCC+TGG | + | chr3_3:59999066-59999085 | None:intergenic | 20.0% |
| !!! | TTTTTGTGTATTTATAAACC+GGG | - | chr3_3:59999070-59999089 | Msa0461630:intron | 20.0% |
| !! | GTATTTATAAATCGAGAATA+AGG | - | chr3_3:59999102-59999121 | Msa0461630:intron | 20.0% |
| !!! | TACTATTTTATTTTTTCACC+AGG | + | chr3_3:60000161-60000180 | None:intergenic | 20.0% |
| !! | TTCATAAAGAAAAAATGACA+AGG | + | chr3_3:60000980-60000999 | None:intergenic | 20.0% |
| !! | AATTTGCAATAGATATGAAA+TGG | + | chr3_3:60001697-60001716 | None:intergenic | 20.0% |
| !! | GAATAGATGTTATAAATAAG+GGG | - | chr3_3:60001846-60001865 | Msa0461630:intron | 20.0% |
| !!! | AAATGTATAACATACTTTTG+AGG | - | chr3_3:60002362-60002381 | Msa0461630:intron | 20.0% |
| !! | ATCTCAAAATTCAATGTATA+AGG | + | chr3_3:60002408-60002427 | None:intergenic | 20.0% |
| !! | ACTTATTGTAGAAAATTTAG+TGG | - | chr3_3:60002998-60003017 | Msa0461630:intron | 20.0% |
| !! | AAGCATAAGAAAATCTTAAA+TGG | + | chr3_3:60003256-60003275 | None:intergenic | 20.0% |
| !! | AAAATTGATGAGTATTAACT+TGG | - | chr3_3:60003524-60003543 | Msa0461630:intron | 20.0% |
| !!! | CATTTTTTCTTTATGAAGAT+TGG | - | chr3_3:60000983-60001002 | Msa0461630:intron | 20.0% |
| !!! | TGTACTGATATAATTTGATT+TGG | - | chr3_3:60003966-60003985 | Msa0461630:intron | 20.0% |
| ! | TGTGCTAGTTGAAAATAATT+TGG | + | chr3_3:59998157-59998176 | None:intergenic | 25.0% |
| !! | TGATTTGTATGTTTGTCTTA+AGG | - | chr3_3:59998199-59998218 | Msa0461630:CDS | 25.0% |
| ! | AGAATTTGTAGGCTTAAATA+TGG | - | chr3_3:59998246-59998265 | Msa0461630:CDS | 25.0% |
| !! | CCAAAAACAAAAATTTTGCA+GGG | + | chr3_3:59998371-59998390 | None:intergenic | 25.0% |
| !! | TCCAAAAACAAAAATTTTGC+AGG | + | chr3_3:59998372-59998391 | None:intergenic | 25.0% |
| !!! | AAAATTCCCGGAAATTTTTT+TGG | + | chr3_3:59998937-59998956 | None:intergenic | 25.0% |
| ! | GTATTTATAAACCGAGAATA+AGG | - | chr3_3:59998959-59998978 | Msa0461630:intron | 25.0% |
| !!! | CATATTTTTTCCCTTATTCT+CGG | + | chr3_3:59998973-59998992 | None:intergenic | 25.0% |
| ! | TATAAATACACAAAAGTTCC+CGG | + | chr3_3:59999091-59999110 | None:intergenic | 25.0% |
| !! | ATTTTTCCAGAATTTTTGCA+GGG | - | chr3_3:59999776-59999795 | Msa0461630:exon | 25.0% |
| ! | ATACAAATTCGGCTTAAATA+TGG | + | chr3_3:59999993-60000012 | None:intergenic | 25.0% |
| ! | ATTATAACTCTAACGAGTAA+CGG | - | chr3_3:60000088-60000107 | Msa0461630:intron | 25.0% |
| !!! | ATGTTTTAAGATTTTCTTCC+TGG | - | chr3_3:60000140-60000159 | Msa0461630:intron | 25.0% |
| ! | ATAGTAGAAGTTATAGAAGA+AGG | - | chr3_3:60000175-60000194 | Msa0461630:intron | 25.0% |
| !! | CTTGTTATAAGACTTTCTTA+TGG | - | chr3_3:60000383-60000402 | Msa0461630:intron | 25.0% |
| !!! | CATCACTTTTGAATAATCTT+CGG | + | chr3_3:60000568-60000587 | None:intergenic | 25.0% |
| ! | ATCTGTAGTATTAATCCAAA+TGG | - | chr3_3:60001282-60001301 | Msa0461630:intron | 25.0% |
| ! | TATTATGTTCAGAACTTATG+TGG | - | chr3_3:60001308-60001327 | Msa0461630:intron | 25.0% |
| !! | TTTCATCAAATTCTAGTTAG+AGG | - | chr3_3:60001553-60001572 | Msa0461630:intron | 25.0% |
| !! | TTCATCAAATTCTAGTTAGA+GGG | - | chr3_3:60001554-60001573 | Msa0461630:intron | 25.0% |
| !! | TTATGAACTTTGACTTATCT+AGG | - | chr3_3:60001650-60001669 | Msa0461630:intron | 25.0% |
| !! | AACAGTATCAACTTTTATCA+AGG | + | chr3_3:60001900-60001919 | None:intergenic | 25.0% |
| ! | TGTGATTACAGTAATATTGA+TGG | + | chr3_3:60002108-60002127 | None:intergenic | 25.0% |
| !! | ATAAAGGAAACAAAGGTTTT+TGG | + | chr3_3:60002245-60002264 | None:intergenic | 25.0% |
| !! | CCAAAAGTTTGAAATTTGAA+CGG | - | chr3_3:60002329-60002348 | Msa0461630:intron | 25.0% |
| !! | CAAAAGTTTGAAATTTGAAC+GGG | - | chr3_3:60002330-60002349 | Msa0461630:intron | 25.0% |
| !! | AAAAGTTTGAAATTTGAACG+GGG | - | chr3_3:60002331-60002350 | Msa0461630:intron | 25.0% |
| !!! | TGTACAGTGTACTATTTTTT+TGG | + | chr3_3:60002450-60002469 | None:intergenic | 25.0% |
| ! | TTAAGAACATTGCATTACAT+AGG | - | chr3_3:60003117-60003136 | Msa0461630:intron | 25.0% |
| ! | TCTAATATTCTTATGAGCTT+AGG | - | chr3_3:60003440-60003459 | Msa0461630:intron | 25.0% |
| ! | AACATTACATAATCGTTAAG+TGG | + | chr3_3:60003879-60003898 | None:intergenic | 25.0% |
| ! | TTAGCATATAACTGTAAGAA+AGG | + | chr3_3:60004058-60004077 | None:intergenic | 25.0% |
| !!! | AGAAATAGTCTTATGTTCTA+TGG | + | chr3_3:60004363-60004382 | None:intergenic | 25.0% |
| ! | TATGTAGTATCTGTATCATT+AGG | + | chr3_3:60004470-60004489 | None:intergenic | 25.0% |
| TTAAATGAGTGGAAAGAGAA+GGG | - | chr3_3:59997828-59997847 | Msa0461630:three_prime_UTR | 30.0% | |
| !!! | GAGAAGGGTTTTTTTGTTTA+TGG | - | chr3_3:59997843-59997862 | Msa0461630:three_prime_UTR | 30.0% |
| !!! | GGGTTTTTTTGTTTATGGAT+CGG | - | chr3_3:59997848-59997867 | Msa0461630:three_prime_UTR | 30.0% |
| TGTAGGCTTAAATATGGTAT+TGG | - | chr3_3:59998252-59998271 | Msa0461630:CDS | 30.0% | |
| !!! | CCCTGCAAAATTTTTGTTTT+TGG | - | chr3_3:59998368-59998387 | Msa0461630:intron | 30.0% |
| TTATTATATAACTGGGGTCA+GGG | + | chr3_3:59998401-59998420 | None:intergenic | 30.0% | |
| TTTATTATATAACTGGGGTC+AGG | + | chr3_3:59998402-59998421 | None:intergenic | 30.0% | |
| TGTATTTATAAACCGAGCTT+AGG | - | chr3_3:59998993-59999012 | Msa0461630:intron | 30.0% | |
| ATACACAAAAAACCTAAGCT+CGG | + | chr3_3:59999008-59999027 | None:intergenic | 30.0% | |
| ! | CATTTTTCCAGAATTTTTGC+AGG | - | chr3_3:59999775-59999794 | Msa0461630:exon | 30.0% |
| !!! | AAAACTGACCTATTTTTGCA+GGG | - | chr3_3:59999839-59999858 | Msa0461630:intron | 30.0% |
| ! | TTTTTGATCCCTGCAAAAAT+AGG | + | chr3_3:59999850-59999869 | None:intergenic | 30.0% |
| !!! | AAAACTGACCTATTTTTGCA+GGG | - | chr3_3:59999839-59999858 | Msa0461630:intron | 30.0% |
| ATTCGGCTTAAATATGGTAT+TGG | + | chr3_3:59999987-60000006 | None:intergenic | 30.0% | |
| CTTATAACAACCTTAGCATA+GGG | + | chr3_3:60000242-60000261 | None:intergenic | 30.0% | |
| ! | TGCATTCTTTTGATGTACTT+TGG | - | chr3_3:60000360-60000379 | Msa0461630:intron | 30.0% |
| TGATAATCTTGTGAGCTATT+AGG | - | chr3_3:60000494-60000513 | Msa0461630:intron | 30.0% | |
| AAAAGTGATGACTACTAACT+TGG | - | chr3_3:60000578-60000597 | Msa0461630:intron | 30.0% | |
| ! | TTTCCAGATTCTTTAAGAAG+AGG | + | chr3_3:60000636-60000655 | None:intergenic | 30.0% |
| CTTCTTAAAGAATCTGGAAA+TGG | - | chr3_3:60000636-60000655 | Msa0461630:intron | 30.0% | |
| AAAAAGTCTTGCTTGTGAAT+GGG | - | chr3_3:60000850-60000869 | Msa0461630:intron | 30.0% | |
| AATGGGCAAAAGACAATATA+AGG | - | chr3_3:60000867-60000886 | Msa0461630:intron | 30.0% | |
| ACCTTTAATTATCCATTCTC+TGG | - | chr3_3:60000954-60000973 | Msa0461630:intron | 30.0% | |
| AACCGAAATCATGTATTAGT+AGG | - | chr3_3:60001139-60001158 | Msa0461630:intron | 30.0% | |
| AGCCTACTAATACATGATTT+CGG | + | chr3_3:60001144-60001163 | None:intergenic | 30.0% | |
| CAGCAAAAATTAAAATGCAG+AGG | + | chr3_3:60001223-60001242 | None:intergenic | 30.0% | |
| CTGAACATAATATTGCCATT+TGG | + | chr3_3:60001300-60001319 | None:intergenic | 30.0% | |
| TTAGCAATAAACTGCAAGAA+AGG | + | chr3_3:60001345-60001364 | None:intergenic | 30.0% | |
| !! | TTTACTGTGAATGGATTTTC+TGG | - | chr3_3:60001507-60001526 | Msa0461630:intron | 30.0% |
| !! | TTACTGTGAATGGATTTTCT+GGG | - | chr3_3:60001508-60001527 | Msa0461630:intron | 30.0% |
| GGGTTGTTTAAATAACACAA+TGG | - | chr3_3:60001528-60001547 | Msa0461630:intron | 30.0% | |
| CTTATCTAGGAAGGAATATA+TGG | - | chr3_3:60001663-60001682 | Msa0461630:intron | 30.0% | |
| TAGGAAGGAATATATGGAAA+AGG | - | chr3_3:60001669-60001688 | Msa0461630:intron | 30.0% | |
| ! | TATCAACTTTTATCAAGGAC+AGG | + | chr3_3:60001895-60001914 | None:intergenic | 30.0% |
| ! | AATATTGATGGTAGTTCGAT+TGG | + | chr3_3:60002096-60002115 | None:intergenic | 30.0% |
| ! | TCACATTATCTAGACTTTTG+AGG | - | chr3_3:60002123-60002142 | Msa0461630:intron | 30.0% |
| ! | CACATTATCTAGACTTTTGA+GGG | - | chr3_3:60002124-60002143 | Msa0461630:intron | 30.0% |
| ! | ACATTATCTAGACTTTTGAG+GGG | - | chr3_3:60002125-60002144 | Msa0461630:intron | 30.0% |
| ! | AATTCCATCGAAAAGGTTTT+TGG | + | chr3_3:60002192-60002211 | None:intergenic | 30.0% |
| TCTCTATAATTCCATCGAAA+AGG | + | chr3_3:60002199-60002218 | None:intergenic | 30.0% | |
| ! | CCGTTCAAATTTCAAACTTT+TGG | + | chr3_3:60002332-60002351 | None:intergenic | 30.0% |
| GTTTACACATGATTGGAATT+TGG | + | chr3_3:60003056-60003075 | None:intergenic | 30.0% | |
| AACATTGCATTACATAGGTA+GGG | - | chr3_3:60003122-60003141 | Msa0461630:intron | 30.0% | |
| ACCAACAATTGAGTATACAA+CGG | - | chr3_3:60003491-60003510 | Msa0461630:intron | 30.0% | |
| TATCCTCTTCTTAAAGAATC+TGG | - | chr3_3:60003576-60003595 | Msa0461630:intron | 30.0% | |
| ! | TTTCCAGATTCTTTAAGAAG+AGG | + | chr3_3:60000636-60000655 | None:intergenic | 30.0% |
| CTTCTTAAAGAATCTGGAAA+TGG | - | chr3_3:60000636-60000655 | Msa0461630:intron | 30.0% | |
| AAAAAGTCTTGCTTGTGAAT+GGG | - | chr3_3:60000850-60000869 | Msa0461630:intron | 30.0% | |
| AATGGGCAAAAGACAATATA+AGG | - | chr3_3:60000867-60000886 | Msa0461630:intron | 30.0% | |
| !! | AGCTCTGAATGGATAATTAA+AGG | + | chr3_3:60003911-60003930 | None:intergenic | 30.0% |
| !! | AAAATGATAAGAGCTCTGAA+TGG | + | chr3_3:60003922-60003941 | None:intergenic | 30.0% |
| ACATATGATATTCTTGCAAG+TGG | - | chr3_3:60004485-60004504 | Msa0461630:intron | 30.0% | |
| ATTCACTCGATTAAGAATAG+TGG | - | chr3_3:60004544-60004563 | Msa0461630:intron | 30.0% | |
| TGAGCAAATGCTTAAATGAG+TGG | - | chr3_3:59997817-59997836 | Msa0461630:three_prime_UTR | 35.0% | |
| CTTAAATGAGTGGAAAGAGA+AGG | - | chr3_3:59997827-59997846 | Msa0461630:three_prime_UTR | 35.0% | |
| ! | GATGTTGAATTTTGCATAGC+TGG | - | chr3_3:59998010-59998029 | Msa0461630:three_prime_UTR | 35.0% |
| AATCAATTTGTAGATGCTCG+TGG | - | chr3_3:59998094-59998113 | Msa0461630:CDS | 35.0% | |
| !! | CAAAACTAGCCTATTTTGCA+GGG | + | chr3_3:59998279-59998298 | None:intergenic | 35.0% |
| !! | TTTTTGGTCCCTGCAAAAAT+AGG | - | chr3_3:59998328-59998347 | Msa0461630:intron | 35.0% |
| !!! | AAAACTGGCCTATTTTTGCA+GGG | + | chr3_3:59998339-59998358 | None:intergenic | 35.0% |
| ! | CTGCAAAAATAGGTCAGTTT+TGG | + | chr3_3:59999840-59999859 | None:intergenic | 35.0% |
| !!! | CAAAACTGACCTATTTTTGC+AGG | - | chr3_3:59999838-59999857 | Msa0461630:intron | 35.0% |
| ! | CTGCAAAAATAGGTCAGTTT+TGG | + | chr3_3:59999840-59999859 | None:intergenic | 35.0% |
| !!! | CAAAACTGACCTATTTTTGC+AGG | - | chr3_3:59999838-59999857 | Msa0461630:intron | 35.0% |
| !! | TTTTTGGTCCCTGCAAAAAT+AGG | + | chr3_3:59998328-59998347 | None:intergenic | 35.0% |
| !!! | AGTTCACTTTTTGAGTGTGT+TGG | - | chr3_3:60000050-60000069 | Msa0461630:intron | 35.0% |
| CCTTATAACAACCTTAGCAT+AGG | + | chr3_3:60000243-60000262 | None:intergenic | 35.0% | |
| CCTATGCTAAGGTTGTTATA+AGG | - | chr3_3:60000240-60000259 | Msa0461630:intron | 35.0% | |
| AAATCAAGTGCGTGTAAGAT+TGG | + | chr3_3:60000309-60000328 | None:intergenic | 35.0% | |
| TACCAGAAACAAGACGAAAA+AGG | + | chr3_3:60000437-60000456 | None:intergenic | 35.0% | |
| AGCTATTAGGTAAACAATGC+TGG | - | chr3_3:60000507-60000526 | Msa0461630:intron | 35.0% | |
| CATCCTCTTCTTAAAGAATC+TGG | - | chr3_3:60000630-60000649 | Msa0461630:intron | 35.0% | |
| CAAAAAGTCTTGCTTGTGAA+TGG | - | chr3_3:60000849-60000868 | Msa0461630:intron | 35.0% | |
| GCCAGAGAATGGATAATTAA+AGG | + | chr3_3:60000958-60000977 | None:intergenic | 35.0% | |
| GTATTATTGAATCGCAACGT+AGG | + | chr3_3:60001034-60001053 | None:intergenic | 35.0% | |
| !! | TAAAATGCAGAGGCATCATA+TGG | + | chr3_3:60001213-60001232 | None:intergenic | 35.0% |
| GTTTCTGCTATACGCTTTAT+CGG | + | chr3_3:60001402-60001421 | None:intergenic | 35.0% | |
| TAAATGGTAAAATGAGAGCC+AGG | + | chr3_3:60001597-60001616 | None:intergenic | 35.0% | |
| ! | GAACTTTGACTTATCTAGGA+AGG | - | chr3_3:60001654-60001673 | Msa0461630:intron | 35.0% |
| GAGCATAATGATTAGTAGGT+AGG | - | chr3_3:60001868-60001887 | Msa0461630:intron | 35.0% | |
| GATGCAAATCACTTGAATCA+TGG | + | chr3_3:60001956-60001975 | None:intergenic | 35.0% | |
| !! | CATTATCTAGACTTTTGAGG+GGG | - | chr3_3:60002126-60002145 | Msa0461630:intron | 35.0% |
| CAAAAAACAACCCTGGAATA+GGG | - | chr3_3:60002152-60002171 | Msa0461630:intron | 35.0% | |
| GAGAGTAGATTTGACAAAGA+AGG | - | chr3_3:60002215-60002234 | Msa0461630:intron | 35.0% | |
| !! | AAGGAAACAAAGGTTTTTGG+TGG | + | chr3_3:60002242-60002261 | None:intergenic | 35.0% |
| TTGCCTAGCTAAAAAAACTG+TGG | - | chr3_3:60002305-60002324 | Msa0461630:intron | 35.0% | |
| TTCTCAGTGTTAGCAAGATA+AGG | - | chr3_3:60002534-60002553 | Msa0461630:intron | 35.0% | |
| CTATAGTGTACACTTGTTCT+AGG | - | chr3_3:60002695-60002714 | Msa0461630:intron | 35.0% | |
| ! | GAGAAAGGTTTTTCTGTTCA+TGG | - | chr3_3:60002757-60002776 | Msa0461630:intron | 35.0% |
| ! | AAGGTGGCTTCTGATTTTAA+TGG | - | chr3_3:60002829-60002848 | Msa0461630:intron | 35.0% |
| ATGACTCGTTTACACATGAT+TGG | + | chr3_3:60003063-60003082 | None:intergenic | 35.0% | |
| GAACATTGCATTACATAGGT+AGG | - | chr3_3:60003121-60003140 | Msa0461630:intron | 35.0% | |
| GACATGAATAAGTGGAAATC+CGG | + | chr3_3:60003163-60003182 | None:intergenic | 35.0% | |
| ! | CTTTTGATGCACTTTGTCTT+TGG | - | chr3_3:60003230-60003249 | Msa0461630:intron | 35.0% |
| TGAGCTTAGGTAAACAATGT+TGG | - | chr3_3:60003453-60003472 | Msa0461630:intron | 35.0% | |
| ACAATGTTGGAACAAATGTG+AGG | - | chr3_3:60003466-60003485 | Msa0461630:intron | 35.0% | |
| TCCGTTGTATACTCAATTGT+TGG | + | chr3_3:60003495-60003514 | None:intergenic | 35.0% | |
| TAAGAAGAGGATATGTCAGT+TGG | + | chr3_3:60003569-60003588 | None:intergenic | 35.0% | |
| CAAAAAGTCTTGCTTGTGAA+TGG | - | chr3_3:60000849-60000868 | Msa0461630:intron | 35.0% | |
| TATCTCGTACACCGATAAAA+CGG | - | chr3_3:60004101-60004120 | Msa0461630:intron | 35.0% | |
| ! | AATAACTTGTCCAGTGATGT+AGG | + | chr3_3:60004185-60004204 | None:intergenic | 35.0% |
| !! | GGACAAGTTATTTCTGTTGA+TGG | - | chr3_3:60004193-60004212 | Msa0461630:intron | 35.0% |
| !! | CAAGTTATTTCTGTTGATGG+AGG | - | chr3_3:60004196-60004215 | Msa0461630:intron | 35.0% |
| TCACTTCTTATGATCATGCT+GGG | + | chr3_3:60004244-60004263 | None:intergenic | 35.0% | |
| ATCACTTCTTATGATCATGC+TGG | + | chr3_3:60004245-60004264 | None:intergenic | 35.0% | |
| TCTCCTTGTTAATCATCTGA+AGG | - | chr3_3:60004404-60004423 | Msa0461630:intron | 35.0% | |
| AGACCTTCAGATGATTAACA+AGG | + | chr3_3:60004410-60004429 | None:intergenic | 35.0% | |
| CATGATGAGATGCTTGATAA+AGG | - | chr3_3:60004437-60004456 | Msa0461630:intron | 35.0% | |
| ATCTTCTCCTTCTCAAAGAG+AGG | - | chr3_3:59997881-59997900 | Msa0461630:three_prime_UTR | 40.0% | |
| ! | ATAAGCTCCTCTCTTTGAGA+AGG | + | chr3_3:59997891-59997910 | None:intergenic | 40.0% |
| CAAGTTGCTTCTGCTTTCAA+CGG | - | chr3_3:59997915-59997934 | Msa0461630:three_prime_UTR | 40.0% | |
| ATGCTCGTGGAAAACTTAGT+TGG | - | chr3_3:59998107-59998126 | Msa0461630:CDS | 40.0% | |
| !! | CCAAAACTAGCCTATTTTGC+AGG | + | chr3_3:59998280-59998299 | None:intergenic | 40.0% |
| !!! | CCTGCAAAATAGGCTAGTTT+TGG | - | chr3_3:59998277-59998296 | Msa0461630:intron | 40.0% |
| !!! | CAAAACTGGCCTATTTTTGC+AGG | + | chr3_3:59998340-59998359 | None:intergenic | 40.0% |
| ! | CTGCAAAAATAGGCCAGTTT+TGG | - | chr3_3:59998338-59998357 | Msa0461630:intron | 40.0% |
| TTTGGTCCCTGCAAAAATTC+TGG | + | chr3_3:59999785-59999804 | None:intergenic | 40.0% | |
| !! | CAAAACTGGCCTATTTTGCA+GGG | - | chr3_3:59999960-59999979 | Msa0461630:intron | 40.0% |
| !! | ACACGCACTTGATTTTCAAG+TGG | - | chr3_3:60000314-60000333 | Msa0461630:intron | 40.0% |
| !!! | CACCTTTTTCGTCTTGTTTC+TGG | - | chr3_3:60000432-60000451 | Msa0461630:intron | 40.0% |
| ACAATGCTGGTACAAATGTG+AGG | - | chr3_3:60000520-60000539 | Msa0461630:intron | 40.0% | |
| TCGGCTGTATACTCAATTGT+TGG | + | chr3_3:60000549-60000568 | None:intergenic | 40.0% | |
| TGCATTCCATCTATGTCAAC+TGG | - | chr3_3:60000605-60000624 | Msa0461630:intron | 40.0% | |
| AGCATCTATGCAGTGAGTAA+AGG | - | chr3_3:60000711-60000730 | Msa0461630:intron | 40.0% | |
| TGCAGTGAGTAAAGGTAACT+TGG | - | chr3_3:60000719-60000738 | Msa0461630:intron | 40.0% | |
| ! | AGCGACGTTTTTGTATACCA+GGG | + | chr3_3:60000908-60000927 | None:intergenic | 40.0% |
| ! | AAGCGACGTTTTTGTATACC+AGG | + | chr3_3:60000909-60000928 | None:intergenic | 40.0% |
| GTATACAAAAACGTCGCTTG+TGG | - | chr3_3:60000910-60000929 | Msa0461630:intron | 40.0% | |
| AAAATGACAAGGCCAGAGAA+TGG | + | chr3_3:60000969-60000988 | None:intergenic | 40.0% | |
| ATGCATACGAAACACGATCA+TGG | - | chr3_3:60001080-60001099 | Msa0461630:intron | 40.0% | |
| TGCATACGAAACACGATCAT+GGG | - | chr3_3:60001081-60001100 | Msa0461630:intron | 40.0% | |
| TGATTTCGGTTGCATGAATC+AGG | + | chr3_3:60001130-60001149 | None:intergenic | 40.0% | |
| AACAGTTTGTCCAGTGATGT+AGG | + | chr3_3:60001472-60001491 | None:intergenic | 40.0% | |
| !! | GGACAAACTGTTTCTGTTGA+TGG | - | chr3_3:60001480-60001499 | Msa0461630:intron | 40.0% |
| !! | CAAACTGTTTCTGTTGATGG+AGG | - | chr3_3:60001483-60001502 | Msa0461630:intron | 40.0% |
| GATGGAGGATTTACTGTGAA+TGG | - | chr3_3:60001498-60001517 | Msa0461630:intron | 40.0% | |
| TAGAGGGTCTGTCAAAAACA+AGG | - | chr3_3:60001570-60001589 | Msa0461630:intron | 40.0% | |
| AGAGGGTCTGTCAAAAACAA+GGG | - | chr3_3:60001571-60001590 | Msa0461630:intron | 40.0% | |
| ! | AGGGGAGCATAATGATTAGT+AGG | - | chr3_3:60001864-60001883 | Msa0461630:intron | 40.0% |
| ! | GTTGGATCACTCGTTTTGTA+GGG | + | chr3_3:60002023-60002042 | None:intergenic | 40.0% |
| !! | AGTTTTATCTGGAACTCGGT+TGG | + | chr3_3:60002048-60002067 | None:intergenic | 40.0% |
| !! | TGGGAGTTTTATCTGGAACT+CGG | + | chr3_3:60002052-60002071 | None:intergenic | 40.0% |
| !!! | CCTATTCCAGGGTTGTTTTT+TGG | + | chr3_3:60002154-60002173 | None:intergenic | 40.0% |
| CCAAAAAACAACCCTGGAAT+AGG | - | chr3_3:60002151-60002170 | Msa0461630:intron | 40.0% | |
| ! | ACCACCAAAAACCTTTTCGA+TGG | - | chr3_3:60002185-60002204 | Msa0461630:intron | 40.0% |
| !! | TCCATCGAAAAGGTTTTTGG+TGG | + | chr3_3:60002189-60002208 | None:intergenic | 40.0% |
| GCTGGAGATAAAGGAAACAA+AGG | + | chr3_3:60002252-60002271 | None:intergenic | 40.0% | |
| TTGTTTCCTTTATCTCCAGC+AGG | - | chr3_3:60002252-60002271 | Msa0461630:intron | 40.0% | |
| TCAAATCCTGCTGGAGATAA+AGG | + | chr3_3:60002261-60002280 | None:intergenic | 40.0% | |
| TTATCTCCAGCAGGATTTGA+AGG | - | chr3_3:60002261-60002280 | Msa0461630:intron | 40.0% | |
| !!! | GGACCACAGTTTTTTTAGCT+AGG | + | chr3_3:60002311-60002330 | None:intergenic | 40.0% |
| ! | GAGAACGTGTATGTGTTTTG+TGG | + | chr3_3:60002519-60002538 | None:intergenic | 40.0% |
| !! | CACTTGTTCTAGGAATGAAG+AGG | - | chr3_3:60002705-60002724 | Msa0461630:intron | 40.0% |
| TGAATGAACGCTTGAATGAG+TGG | - | chr3_3:60002731-60002750 | Msa0461630:intron | 40.0% | |
| TTGAATGAGTGGAAGGAGAA+AGG | - | chr3_3:60002742-60002761 | Msa0461630:intron | 40.0% | |
| GACTTCTTCTTCTCAAAGAG+AGG | - | chr3_3:60002795-60002814 | Msa0461630:intron | 40.0% | |
| CATTACATAGGTAGGGACTA+GGG | - | chr3_3:60003129-60003148 | Msa0461630:intron | 40.0% | |
| TGCGACAAGACATGAATAAG+TGG | + | chr3_3:60003171-60003190 | None:intergenic | 40.0% | |
| !! | TCGCATTTTCAAGCTTCTGA+GGG | + | chr3_3:60003289-60003308 | None:intergenic | 40.0% |
| !! | ATCGCATTTTCAAGCTTCTG+AGG | + | chr3_3:60003290-60003309 | None:intergenic | 40.0% |
| GATATGTCAGTTGGCATAGA+TGG | + | chr3_3:60003560-60003579 | None:intergenic | 40.0% | |
| ! | AGTGGCGTTTTTGTATACCA+CGG | + | chr3_3:60003861-60003880 | None:intergenic | 40.0% |
| ! | GTTTCGGCTATCCGTTTTAT+CGG | + | chr3_3:60004115-60004134 | None:intergenic | 40.0% |
| GGAAGACACTTCATGTGTTT+CGG | + | chr3_3:60004131-60004150 | None:intergenic | 40.0% | |
| ! | AACACATGAAGTGTCTTCCT+TGG | - | chr3_3:60004132-60004151 | Msa0461630:intron | 40.0% |
| GATGGAGGATTTACTGCAAA+TGG | - | chr3_3:60004211-60004230 | Msa0461630:intron | 40.0% | |
| GATGATTAACAAGGAGACAC+AGG | + | chr3_3:60004401-60004420 | None:intergenic | 40.0% | |
| TTGCAAGTGGAAAGCTCAAA+GGG | - | chr3_3:60004498-60004517 | Msa0461630:intron | 40.0% | |
| !! | GGTATTGGTCCCTGCAAAAT+AGG | - | chr3_3:59998267-59998286 | Msa0461630:CDS | 45.0% |
| GCAGGGACTAAAACCAAAAC+TGG | + | chr3_3:59999824-59999843 | None:intergenic | 45.0% | |
| GCAGGGACTAAAACCAAAAC+TGG | - | chr3_3:59999824-59999843 | Msa0461630:five_prime_UTR | 45.0% | |
| ! | CCTGCAAAATAGGCCAGTTT+TGG | + | chr3_3:59999962-59999981 | None:intergenic | 45.0% |
| !! | CCAAAACTGGCCTATTTTGC+AGG | - | chr3_3:59999959-59999978 | Msa0461630:intron | 45.0% |
| !! | GGTATTGGTCCCTGCAAAAT+AGG | + | chr3_3:59998267-59998286 | None:intergenic | 45.0% |
| AGTGCGTGTAAGATTGGTGA+CGG | + | chr3_3:60000303-60000322 | None:intergenic | 45.0% | |
| GATGTGCCAGTTGACATAGA+TGG | + | chr3_3:60000614-60000633 | None:intergenic | 45.0% | |
| GCTTATCAGAGATGCAACAG+AGG | + | chr3_3:60000679-60000698 | None:intergenic | 45.0% | |
| GTTGCATCTCTGATAAGCGT+AGG | - | chr3_3:60000681-60000700 | Msa0461630:intron | 45.0% | |
| TCTCTGATAAGCGTAGGTAC+CGG | - | chr3_3:60000687-60000706 | Msa0461630:intron | 45.0% | |
| ACTCACTGCATAGATGCTTC+CGG | + | chr3_3:60000709-60000728 | None:intergenic | 45.0% | |
| AAAAACGTCGCTTGTGGAAC+AGG | - | chr3_3:60000916-60000935 | Msa0461630:intron | 45.0% | |
| !! | AATGCAGAGGCATCATATGG+TGG | + | chr3_3:60001210-60001229 | None:intergenic | 45.0% |
| AGATGCTCACACTGACACTA+CGG | + | chr3_3:60001266-60001285 | None:intergenic | 45.0% | |
| ! | AACACATGAAGTGTCTGCCT+TGG | - | chr3_3:60001419-60001438 | Msa0461630:intron | 45.0% |
| CAGACAAAGGAAAGTCACCA+AGG | + | chr3_3:60001439-60001458 | None:intergenic | 45.0% | |
| ! | GGTTGGATCACTCGTTTTGT+AGG | + | chr3_3:60002024-60002043 | None:intergenic | 45.0% |
| ! | TTTATCTGGAACTCGGTTGG+TGG | + | chr3_3:60002045-60002064 | None:intergenic | 45.0% |
| !!! | CGAGCTTTGGGAGTTTTATC+TGG | + | chr3_3:60002059-60002078 | None:intergenic | 45.0% |
| ACCATGGTAGATCGAGCTTT+GGG | + | chr3_3:60002071-60002090 | None:intergenic | 45.0% | |
| AACCATGGTAGATCGAGCTT+TGG | + | chr3_3:60002072-60002091 | None:intergenic | 45.0% | |
| ! | GGTAGTTCGATTGGTAACCA+TGG | + | chr3_3:60002087-60002106 | None:intergenic | 45.0% |
| AACAACCCTGGAATAGGGAT+AGG | - | chr3_3:60002157-60002176 | Msa0461630:intron | 45.0% | |
| CTTCTCCTATCCCTATTCCA+GGG | + | chr3_3:60002165-60002184 | None:intergenic | 45.0% | |
| TCTTCTCCTATCCCTATTCC+AGG | + | chr3_3:60002166-60002185 | None:intergenic | 45.0% | |
| TGTGAACCTTCAAATCCTGC+TGG | + | chr3_3:60002270-60002289 | None:intergenic | 45.0% | |
| ACAGTAGCAGAAGCTCAAGA+TGG | - | chr3_3:60002587-60002606 | Msa0461630:intron | 45.0% | |
| !! | GTAGAGGAACTTGCTGAGTT+TGG | - | chr3_3:60002670-60002689 | Msa0461630:intron | 45.0% |
| TGAACGCTTGAATGAGTGGA+AGG | - | chr3_3:60002735-60002754 | Msa0461630:intron | 45.0% | |
| ! | AAGAGAGGAGCTTGTTCGAA+AGG | - | chr3_3:60002810-60002829 | Msa0461630:intron | 45.0% |
| GCATTACATAGGTAGGGACT+AGG | - | chr3_3:60003128-60003147 | Msa0461630:intron | 45.0% | |
| GTTTGTCAGAGATGCAACAG+AGG | + | chr3_3:60003625-60003644 | None:intergenic | 45.0% | |
| GTTGCATCTCTGACAAACGT+AGG | - | chr3_3:60003627-60003646 | Msa0461630:intron | 45.0% | |
| TCTCTGACAAACGTAGGTTC+TGG | - | chr3_3:60003633-60003652 | Msa0461630:intron | 45.0% | |
| ACCATATACGCAGCGTGTAA+AGG | - | chr3_3:60003657-60003676 | Msa0461630:intron | 45.0% | |
| ACCTTTACACGCTGCGTATA+TGG | + | chr3_3:60003661-60003680 | None:intergenic | 45.0% | |
| TGCAGCTGAAGAAAACAGCA+CGG | + | chr3_3:60003769-60003788 | None:intergenic | 45.0% | |
| CAGACAAAGGAAAGCTACCA+AGG | + | chr3_3:60004152-60004171 | None:intergenic | 45.0% | |
| CTTGCAAGTGGAAAGCTCAA+AGG | - | chr3_3:60004497-60004516 | Msa0461630:intron | 45.0% | |
| AAAGGGTCACATACTCTTGC+TGG | - | chr3_3:60004515-60004534 | Msa0461630:intron | 45.0% | |
| !!! | TATTTTTTTATTATATAACT+GGG | + | chr3_3:59998408-59998427 | None:intergenic | 5.0% |
| !!! | ATATTTTTTTATTATATAAC+TGG | + | chr3_3:59998409-59998428 | None:intergenic | 5.0% |
| !! | AAAAAAATATTAAAAAATTC+TGG | - | chr3_3:59998419-59998438 | Msa0461630:intron | 5.0% |
| !! | ATAAAAAAATTAAAAAATTC+AGG | - | chr3_3:59998508-59998527 | Msa0461630:CDS | 5.0% |
| !! | AAAAAAATATTAAAAAATTC+TGG | - | chr3_3:59998419-59998438 | Msa0461630:intron | 5.0% |
| !! | ATAAAAAATTTAAAAAATTC+TGG | - | chr3_3:59998596-59998615 | Msa0461630:intron | 5.0% |
| !! | AAAAAAATATTAAAAAATTC+TGG | - | chr3_3:59998419-59998438 | Msa0461630:intron | 5.0% |
| !! | GAAAAAAATTTAAAAAAATA+CGG | + | chr3_3:59999454-59999473 | None:intergenic | 5.0% |
| !! | AATTGAAAAATTAATAAAAA+TGG | + | chr3_3:59998583-59998602 | None:intergenic | 5.0% |
| !! | TAAAAAATATTAAAAAATTC+TGG | + | chr3_3:59999501-59999520 | None:intergenic | 5.0% |
| !! | AATAAAAAATTAAAAAATTC+TGG | + | chr3_3:59999551-59999570 | None:intergenic | 5.0% |
| !! | AAAAAAATATTAAAAAATTC+TGG | + | chr3_3:59998419-59998438 | None:intergenic | 5.0% |
| !! | TAAAAAATATTAAAAAATTC+TGG | + | chr3_3:59999501-59999520 | None:intergenic | 5.0% |
| !! | AAAAAAATATTAAAAAATTC+TGG | + | chr3_3:59998419-59998438 | None:intergenic | 5.0% |
| !!! | AAAAATTTTTTAAAAAATTC+TGG | + | chr3_3:59999736-59999755 | None:intergenic | 5.0% |
| !!! | AATTTTTTTTTTATAGTTTT+TGG | + | chr3_3:59999803-59999822 | None:intergenic | 5.0% |
| !!! | TATTTATTTATTTTATCATT+TGG | - | chr3_3:60001757-60001776 | Msa0461630:intron | 5.0% |
| ACTGTGTGTGTGTGTGTGTG+AGG | + | chr3_3:60000209-60000228 | None:intergenic | 50.0% | |
| GAGAGCTTGTCCCTATGCTA+AGG | - | chr3_3:60000229-60000248 | Msa0461630:intron | 50.0% | |
| GTCTGTCAAAAACAAGGGCC+TGG | - | chr3_3:60001576-60001595 | Msa0461630:intron | 50.0% | |
| TCCCAAAGCTCGATCTACCA+TGG | - | chr3_3:60002067-60002086 | Msa0461630:intron | 50.0% | |
| AAGCTCAAGATGGTCCCTCA+AGG | - | chr3_3:60002597-60002616 | Msa0461630:intron | 50.0% | |
| AGCTCAAGATGGTCCCTCAA+GGG | - | chr3_3:60002598-60002617 | Msa0461630:intron | 50.0% | |
| GAGAGCTGTGAATCCCTTGA+GGG | + | chr3_3:60002614-60002633 | None:intergenic | 50.0% | |
| GATCGGTCATGCTATCGTAG+AGG | - | chr3_3:60002654-60002673 | Msa0461630:intron | 50.0% | |
| ! | AGAGGAGCTTGTTCGAAAGG+TGG | - | chr3_3:60002813-60002832 | Msa0461630:intron | 50.0% |
| TGAGCTGAAGTCATGCGTGA+CGG | + | chr3_3:60003396-60003415 | None:intergenic | 50.0% | |
| CTGCTTACTCCACCTAGCGA+GGG | - | chr3_3:60000263-60000282 | Msa0461630:intron | 55.0% | |
| GAAACACGATCATGGGCTCG+TGG | - | chr3_3:60001088-60001107 | Msa0461630:intron | 55.0% | |
| AGGAAGCAGCTGGCAGACAA+AGG | + | chr3_3:60001452-60001471 | None:intergenic | 55.0% | |
| CCAGTGATGTAGGAAGCAGC+TGG | + | chr3_3:60001462-60001481 | None:intergenic | 55.0% | |
| CCAGCTGCTTCCTACATCAC+TGG | - | chr3_3:60001459-60001478 | Msa0461630:intron | 55.0% | |
| !! | TCTGGAACTCGGTTGGTGGT+TGG | + | chr3_3:60002041-60002060 | None:intergenic | 55.0% |
| ! | GGGGTGCCAAAAAACAACCC+TGG | - | chr3_3:60002145-60002164 | Msa0461630:intron | 55.0% |
| CGAGAGCTGTGAATCCCTTG+AGG | + | chr3_3:60002615-60002634 | None:intergenic | 55.0% | |
| GGATTCACAGCTCTCGTCAC+CGG | - | chr3_3:60002619-60002638 | Msa0461630:intron | 55.0% | |
| ! | AGGGACTAGGGTTCTAACGC+CGG | - | chr3_3:60003141-60003160 | Msa0461630:intron | 55.0% |
| AGGAAGCAGCTGGCAGACAA+AGG | + | chr3_3:60001452-60001471 | None:intergenic | 55.0% | |
| CCAGTGATGTAGGAAGCAGC+TGG | + | chr3_3:60001462-60001481 | None:intergenic | 55.0% | |
| CCAGCTGCTTCCTACATCAC+TGG | - | chr3_3:60001459-60001478 | Msa0461630:intron | 55.0% | |
| GCTGCTTACTCCACCTAGCG+AGG | - | chr3_3:60000262-60000281 | Msa0461630:intron | 60.0% | |
| ! | TAGCGAGGGCCTTGTGCACT+GGG | - | chr3_3:60000277-60000296 | Msa0461630:intron | 60.0% |
| GGAGCAACTGTGTTGCACCC+TGG | - | chr3_3:60000888-60000907 | Msa0461630:intron | 60.0% | |
| TCATGGGCTCGTGGCTCATC+TGG | - | chr3_3:60001097-60001116 | Msa0461630:intron | 60.0% | |
| TTCACAGCTCTCGTCACCGG+CGG | - | chr3_3:60002622-60002641 | Msa0461630:intron | 60.0% | |
| GGAGCAACTGTGTTGCACCG+TGG | - | chr3_3:60003841-60003860 | Msa0461630:intron | 60.0% | |
| TGCACAAGGCCCTCGCTAGG+TGG | + | chr3_3:60000275-60000294 | None:intergenic | 65.0% | |
| CAGTGCACAAGGCCCTCGCT+AGG | + | chr3_3:60000278-60000297 | None:intergenic | 65.0% | |
| ! | CTAGCGAGGGCCTTGTGCAC+TGG | - | chr3_3:60000276-60000295 | Msa0461630:intron | 65.0% |
| !! | TGGTGACGGCCCAGTGCACA+AGG | + | chr3_3:60000289-60000308 | None:intergenic | 65.0% |
| TCGTCACCGGCGGAACTCGT+GGG | - | chr3_3:60002632-60002651 | Msa0461630:intron | 65.0% | |
| ACCGGCGGAACTCGTGGGAT+CGG | - | chr3_3:60002637-60002656 | Msa0461630:intron | 65.0% | |
| ACCGATCCCACGAGTTCCGC+CGG | + | chr3_3:60002641-60002660 | None:intergenic | 65.0% | |
| CTCGTCACCGGCGGAACTCG+TGG | - | chr3_3:60002631-60002650 | Msa0461630:intron | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_3 | gene | 59997793 | 60004568 | 59997793 | ID=Msa0461630;Name=Msa0461630 |
| chr3_3 | mRNA | 59997793 | 60004568 | 59997793 | ID=Msa0461630-mRNA-1;Parent=Msa0461630;Name=Msa0461630-mRNA-1;_AED=0.37;_eAED=0.37;_QI=81|1|1|1|0.75|0.6|5|301|273 |
| chr3_3 | exon | 59997793 | 59998294 | 59997793 | ID=Msa0461630-mRNA-1:exon:12530;Parent=Msa0461630-mRNA-1 |
| chr3_3 | exon | 59998471 | 59998577 | 59998471 | ID=Msa0461630-mRNA-1:exon:12529;Parent=Msa0461630-mRNA-1 |
| chr3_3 | exon | 59998683 | 59998899 | 59998683 | ID=Msa0461630-mRNA-1:exon:12528;Parent=Msa0461630-mRNA-1 |
| chr3_3 | exon | 59999494 | 59999848 | 59999494 | ID=Msa0461630-mRNA-1:exon:12527;Parent=Msa0461630-mRNA-1 |
| chr3_3 | exon | 60004546 | 60004568 | 60004546 | ID=Msa0461630-mRNA-1:exon:12526;Parent=Msa0461630-mRNA-1 |
| chr3_3 | five_prime_UTR | 60004546 | 60004568 | 60004546 | ID=Msa0461630-mRNA-1:five_prime_utr;Parent=Msa0461630-mRNA-1 |
| chr3_3 | five_prime_UTR | 59999791 | 59999848 | 59999791 | ID=Msa0461630-mRNA-1:five_prime_utr;Parent=Msa0461630-mRNA-1 |
| chr3_3 | CDS | 59999494 | 59999790 | 59999494 | ID=Msa0461630-mRNA-1:cds;Parent=Msa0461630-mRNA-1 |
| chr3_3 | CDS | 59998683 | 59998899 | 59998683 | ID=Msa0461630-mRNA-1:cds;Parent=Msa0461630-mRNA-1 |
| chr3_3 | CDS | 59998471 | 59998577 | 59998471 | ID=Msa0461630-mRNA-1:cds;Parent=Msa0461630-mRNA-1 |
| chr3_3 | CDS | 59998094 | 59998294 | 59998094 | ID=Msa0461630-mRNA-1:cds;Parent=Msa0461630-mRNA-1 |
| chr3_3 | three_prime_UTR | 59997793 | 59998093 | 59997793 | ID=Msa0461630-mRNA-1:three_prime_utr;Parent=Msa0461630-mRNA-1 |
| Gene Sequence |
| Protein sequence |
