AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1002970


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1002970 MtrunA17_Chr1g0193701 86.477 281 29 3 1 279 1 274 9.18e-174 480
Msa1002970 MtrunA17_Chr8g0384911 37.975 158 82 4 105 261 107 249 2.27e-20 90.9
Msa1002970 MtrunA17_Chr8g0384911 28.743 167 97 4 98 262 350 496 7.32e-15 74.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1002970 AT4G01650.2 59.694 196 73 3 83 274 16 209 5.08e-79 238
Msa1002970 AT4G01650.1 59.694 196 73 3 83 274 93 286 5.45e-78 238
Msa1002970 AT4G01650.3 64.885 131 42 2 83 211 93 221 8.12e-56 179
Msa1002970 AT5G08720.1 38.415 164 85 4 105 267 97 245 6.30e-22 95.9
Msa1002970 AT5G08720.1 27.717 184 111 4 98 279 328 491 2.18e-13 70.5

Find 80 sgRNAs with CRISPR-Local

Find 246 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTTCACCCCTTACGGATTTA+AGG 0.165307 6_4:+89788855 None:intergenic
CTGCAAGAGTCGAGCAAAAT+TGG 0.187080 6_4:+89791541 None:intergenic
ATCATCATCGGTGTCGTTTA+AGG 0.240676 6_4:+89791799 None:intergenic
AACGACACCGATGATGATTC+TGG 0.246364 6_4:-89791794 Msa1002970:CDS
TTCAGCTCTTTGAAGGAAAA+TGG 0.271309 6_4:-89789743 Msa1002970:CDS
TGATGATTCTGGGACTTTAT+TGG 0.289143 6_4:-89791783 Msa1002970:CDS
AGGTTGGCTGATTTCATTCC+TGG 0.313493 6_4:-89791596 Msa1002970:CDS
AGAGAAGAGAAGGGTGGAAA+TGG 0.316503 6_4:+89791919 None:intergenic
CTCAGTAAATTGATCCAAAA+AGG 0.327199 6_4:-89791566 Msa1002970:CDS
GGAGAGCAGAACTTGGCATT+TGG 0.347544 6_4:-89789873 Msa1002970:CDS
ACGCTTCACTTGATTCCATT+TGG 0.351261 6_4:-89791640 Msa1002970:CDS
GAGAGCAGAACTTGGCATTT+GGG 0.357576 6_4:-89789872 Msa1002970:CDS
AGGAAAGTTTGCGTGGAAAC+TGG 0.376996 6_4:+89791968 None:intergenic
TAATACAAGTAAAGTTCATT+TGG 0.385292 6_4:-89788757 Msa1002970:three_prime_UTR
CGAAGATGTGGTTGCCCGTT+GGG 0.403416 6_4:-89788916 Msa1002970:CDS
TCGGTGTCGTTTAAGGTGGT+TGG 0.404356 6_4:+89791806 None:intergenic
CGGTGTCGTTTAAGGTGGTT+GGG 0.405611 6_4:+89791807 None:intergenic
TCAGAGTCGTTGGTTGAAGA+TGG 0.419018 6_4:-89791734 Msa1002970:CDS
TTTCAGAGCTTCACCCCTTA+CGG 0.429324 6_4:+89788847 None:intergenic
TAAGGTGGTTGGGTTGTGTT+TGG 0.430644 6_4:+89791817 None:intergenic
AATATCTTCAAGTTCTTGAC+TGG 0.431794 6_4:-89788682 Msa1002970:three_prime_UTR
CTTAGGTAAAGCTGCAAGCT+TGG 0.443334 6_4:-89788722 Msa1002970:three_prime_UTR
CTACCCTCTATCAGCCCAAC+GGG 0.445050 6_4:+89788902 None:intergenic
GGGTTAAAATTTGATGCTAA+AGG 0.447148 6_4:-89789852 Msa1002970:CDS
CCAACGGGCAACCACATCTT+CGG 0.447460 6_4:+89788917 None:intergenic
ATCAGTCAAGATATTCCAAA+TGG 0.452946 6_4:+89791625 None:intergenic
TTTGGTGTCAATTCTCACTT+AGG 0.457581 6_4:-89788739 Msa1002970:three_prime_UTR
TGCAAGAGTCGAGCAAAATT+GGG 0.469520 6_4:+89791542 None:intergenic
GTCGTGTTAATTTCACGAAC+CGG 0.472895 6_4:+89788965 None:intergenic
CAGAGTCGTTGGTTGAAGAT+GGG 0.478415 6_4:-89791733 Msa1002970:CDS
ATAGACTTCAAGATGATTGA+AGG 0.479763 6_4:-89789771 Msa1002970:CDS
TTAACCTGCATTATCAATTG+TGG 0.483192 6_4:-89792084 Msa1002970:five_prime_UTR
CTTGACTGATTATGAAAGGT+TGG 0.487454 6_4:-89791612 Msa1002970:CDS
ATAAGAGAAAGAGAATATAC+AGG 0.491599 6_4:-89792030 Msa1002970:five_prime_UTR
GAGGGTGTGAAATGAAAAGG+GGG 0.500049 6_4:+89791893 None:intergenic
TTGCCCACAATTGATAATGC+AGG 0.500345 6_4:+89792080 None:intergenic
ACGACACCGATGATGATTCT+GGG 0.503280 6_4:-89791793 Msa1002970:CDS
TAACCTGCATTATCAATTGT+GGG 0.503628 6_4:-89792083 Msa1002970:five_prime_UTR
AAAAGAACCTTAAATCCGTA+AGG 0.508599 6_4:-89788862 Msa1002970:CDS
GTGAGGGTGTGAAATGAAAA+GGG 0.510813 6_4:+89791891 None:intergenic
GGTGAGGGTGTGAAATGAAA+AGG 0.512236 6_4:+89791890 None:intergenic
GAAATGGAAGCCGGTGGTGA+TGG 0.514183 6_4:+89791935 None:intergenic
AAGCCGGTGGTGATGGTTGA+GGG 0.514399 6_4:+89791942 None:intergenic
CCGAAGATGTGGTTGCCCGT+TGG 0.516968 6_4:-89788917 Msa1002970:CDS
AGTTGAAGATTCAGAGTCGT+TGG 0.518855 6_4:-89791744 Msa1002970:CDS
GAAGCCGGTGGTGATGGTTG+AGG 0.519019 6_4:+89791941 None:intergenic
GAATTGGAGACTCTTCCATC+TGG 0.520472 6_4:-89789807 Msa1002970:CDS
TGAGGGTGTGAAATGAAAAG+GGG 0.522808 6_4:+89791892 None:intergenic
TGGAAGTTGTGAGGACTCTC+CGG 0.533175 6_4:-89788984 Msa1002970:CDS
GTTGCCCGTTGGGCTGATAG+AGG 0.535819 6_4:-89788906 Msa1002970:CDS
ACAGATTGGAGAGCAGAACT+TGG 0.540322 6_4:-89789880 Msa1002970:intron
AAAGAACCTTAAATCCGTAA+GGG 0.553093 6_4:-89788861 Msa1002970:CDS
GATGTTTAACGAACATGACT+TGG 0.555776 6_4:+89791868 None:intergenic
TAGACTTCAAGATGATTGAA+GGG 0.561714 6_4:-89789770 Msa1002970:CDS
ATTCACGCAGAATTGAGTCT+AGG 0.570895 6_4:-89791673 Msa1002970:CDS
AGAGTCGTTGGTTGAAGATG+GGG 0.585019 6_4:-89791732 Msa1002970:CDS
ATCATCGGTGTCGTTTAAGG+TGG 0.588547 6_4:+89791802 None:intergenic
TTGGAAGCGCGATACAAAGA+AGG 0.590076 6_4:+89791836 None:intergenic
ATGTCACGCTTCATACCAGA+TGG 0.591702 6_4:+89789792 None:intergenic
AGGGAGTAGGAAAGTTTGCG+TGG 0.591738 6_4:+89791961 None:intergenic
AACGAACATGACTTGGGTGA+GGG 0.599864 6_4:+89791875 None:intergenic
TTGCCCGTTGGGCTGATAGA+GGG 0.601510 6_4:-89788905 Msa1002970:CDS
ATATCTTGACTGATTATGAA+AGG 0.602548 6_4:-89791616 Msa1002970:CDS
TGGGACTTTATTGGTGACAG+AGG 0.604754 6_4:-89791774 Msa1002970:CDS
AGAAGGGTGGAAATGGAAGC+CGG 0.605384 6_4:+89791926 None:intergenic
ATGTTTAACGAACATGACTT+GGG 0.610648 6_4:+89791869 None:intergenic
GTGGTGATGGTTGAGGGAGT+AGG 0.613276 6_4:+89791948 None:intergenic
AGACTTCAAGATGATTGAAG+GGG 0.615498 6_4:-89789769 Msa1002970:CDS
AATTTACTGAGGGCAAGACC+AGG 0.620856 6_4:+89791578 None:intergenic
AAGAACCTTAAATCCGTAAG+GGG 0.627039 6_4:-89788860 Msa1002970:CDS
GGGGTGAGAGAAGAGAAGGG+TGG 0.628709 6_4:+89791913 None:intergenic
TAACGAACATGACTTGGGTG+AGG 0.630441 6_4:+89791874 None:intergenic
TTTCAGCGATGGAAGTTGTG+AGG 0.646341 6_4:-89788993 Msa1002970:CDS
TCTACCCTCTATCAGCCCAA+CGG 0.653017 6_4:+89788901 None:intergenic
TAAAGTCCCAGAATCATCAT+CGG 0.654239 6_4:+89791787 None:intergenic
ACTCCCTCAACCATCACCAC+CGG 0.663875 6_4:-89791945 Msa1002970:CDS
TTGATGTTAAGCCGAAGATG+TGG 0.693995 6_4:-89788928 Msa1002970:CDS
ATCTTTGACTCAATCAACGT+AGG 0.697511 6_4:+89792127 None:intergenic
AGGGTGTGAAATGAAAAGGG+GGG 0.736177 6_4:+89791894 None:intergenic
AGGGTGGAAATGGAAGCCGG+TGG 0.756426 6_4:+89791929 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ACTTTTCATTTTTTATTAAT+CGG - chr6_4:89789405-89789424 Msa1002970:intron 10.0%
!!! CTTTTCATTTTTTATTAATC+GGG - chr6_4:89789406-89789425 Msa1002970:intron 15.0%
!! AATACACATAATCTTTAATA+CGG + chr6_4:89789592-89789611 None:intergenic 15.0%
!!! ACTTGATTTTATTAAATTCA+CGG - chr6_4:89789748-89789767 Msa1002970:CDS 15.0%
!! TTGTTTATATTGCAAATTTA+GGG + chr6_4:89790026-89790045 None:intergenic 15.0%
!! TTTGTTTATATTGCAAATTT+AGG + chr6_4:89790027-89790046 None:intergenic 15.0%
!! AAATTTGCAATATAAACAAA+AGG - chr6_4:89790027-89790046 Msa1002970:intron 15.0%
!!! ATTGTTATTTTCATCAAATA+CGG - chr6_4:89790139-89790158 Msa1002970:intron 15.0%
!! ATAAGAAGAAAAAAAAACAT+AGG - chr6_4:89790288-89790307 Msa1002970:intron 15.0%
!!! ATTTTCTTGAAAAGAAAATT+TGG - chr6_4:89790870-89790889 Msa1002970:intron 15.0%
!! TCGAAAACAAAATAAAAATA+AGG + chr6_4:89791281-89791300 None:intergenic 15.0%
!! TTGTAATTAAAAGTAAAAAC+AGG - chr6_4:89791398-89791417 Msa1002970:intron 15.0%
!!! TTATGTAAATTTTAGAAACT+AGG + chr6_4:89791465-89791484 None:intergenic 15.0%
!! TAAAATTTACATAAACTTAG+TGG - chr6_4:89791471-89791490 Msa1002970:intron 15.0%
!!! TAGGAATTACTCTAATTTTT+TGG + chr6_4:89789541-89789560 None:intergenic 20.0%
!! TAATCTTTAATACGGATAAT+GGG + chr6_4:89789584-89789603 None:intergenic 20.0%
!! ATAATCTTTAATACGGATAA+TGG + chr6_4:89789585-89789604 None:intergenic 20.0%
!! GTATTAAAGATTATGTGTAT+TGG - chr6_4:89789591-89789610 Msa1002970:intron 20.0%
!! ATTCTAGATATAAAAGTAGT+AGG - chr6_4:89789773-89789792 Msa1002970:CDS 20.0%
!!! AAACTGTATAGTTCTAAATA+GGG - chr6_4:89789869-89789888 Msa1002970:CDS 20.0%
!!! AAATGCTGTATTTTATAGTT+TGG - chr6_4:89789967-89789986 Msa1002970:intron 20.0%
!!! TATGTTTTAGCATTTAAAAC+CGG + chr6_4:89790178-89790197 None:intergenic 20.0%
!!! AGGATATGATTTTGAATATT+AGG - chr6_4:89790653-89790672 Msa1002970:intron 20.0%
!! GGTTAAAATTAAACTGTATA+TGG - chr6_4:89790674-89790693 Msa1002970:intron 20.0%
!!! AAATAAGGTATCATTTAAAG+AGG + chr6_4:89791266-89791285 None:intergenic 20.0%
!! TGGTGAAAATAATGAAAAAT+TGG + chr6_4:89791326-89791345 None:intergenic 20.0%
!!! ACAATTTTTTAAACCAAACA+TGG - chr6_4:89791438-89791457 Msa1002970:intron 20.0%
!! AATTGCACATATTGAAAATT+GGG + chr6_4:89791680-89791699 None:intergenic 20.0%
!! TAATACAAGTAAAGTTCATT+TGG - chr6_4:89792050-89792069 Msa1002970:five_prime_UTR 20.0%
!!! AAGAACTTGAAGATATTTTA+GGG + chr6_4:89792122-89792141 None:intergenic 20.0%
! ATAAGAGAAAGAGAATATAC+AGG - chr6_4:89788777-89788796 Msa1002970:three_prime_UTR 25.0%
! ATATCTTGACTGATTATGAA+AGG - chr6_4:89789191-89789210 Msa1002970:intron 25.0%
!! TTTTTGGATCAATTTACTGA+GGG + chr6_4:89789242-89789261 None:intergenic 25.0%
! ATATTGTATTAGTGTTGTGT+TGG - chr6_4:89789372-89789391 Msa1002970:intron 25.0%
! TATTGTATTAGTGTTGTGTT+GGG - chr6_4:89789373-89789392 Msa1002970:intron 25.0%
!!! TTCATTTTTTATTAATCGGG+CGG - chr6_4:89789409-89789428 Msa1002970:intron 25.0%
! AATAATACAACCTAGAAAGT+AGG + chr6_4:89789560-89789579 None:intergenic 25.0%
! TAGATATAAAAGTAGTAGGA+AGG - chr6_4:89789777-89789796 Msa1002970:CDS 25.0%
! AGATATAAAAGTAGTAGGAA+GGG - chr6_4:89789778-89789797 Msa1002970:CDS 25.0%
!! TTAGAACTATACAGTTTGTT+TGG + chr6_4:89789866-89789885 None:intergenic 25.0%
!!! CAAACTGTATAGTTCTAAAT+AGG - chr6_4:89789868-89789887 Msa1002970:CDS 25.0%
!! GTTTTCAATTCAATGTAGTT+TGG - chr6_4:89790082-89790101 Msa1002970:intron 25.0%
! TTAAAATAAAAAGCCACTCA+TGG + chr6_4:89790376-89790395 None:intergenic 25.0%
! TATGATTTCCATATATGTCA+TGG - chr6_4:89790458-89790477 Msa1002970:intron 25.0%
! TAACTATACCTTTAAACTGT+GGG - chr6_4:89790523-89790542 Msa1002970:intron 25.0%
! TAACTTGGAGAAAGTAAATT+AGG + chr6_4:89790764-89790783 None:intergenic 25.0%
!! CATTGAATTTCTAAAGGTTA+AGG + chr6_4:89790790-89790809 None:intergenic 25.0%
!! CTTAACCTTTAGAAATTCAA+TGG - chr6_4:89790788-89790807 Msa1002970:intron 25.0%
!!! AGATTGTTTTGAGAAAGAAT+TGG - chr6_4:89790984-89791003 Msa1002970:intron 25.0%
! TCAGAAGAATTCTAATAAGA+GGG + chr6_4:89791121-89791140 None:intergenic 25.0%
! ATCAGAAGAATTCTAATAAG+AGG + chr6_4:89791122-89791141 None:intergenic 25.0%
!!! TTGGATTTTTAGAACTGAAT+AGG - chr6_4:89791218-89791237 Msa1002970:intron 25.0%
! AAAAACAGGAGTTGAAAATT+AGG - chr6_4:89791412-89791431 Msa1002970:intron 25.0%
! ATTGCACATATTGAAAATTG+GGG + chr6_4:89791679-89791698 None:intergenic 25.0%
! CAATTGCACATATTGAAAAT+TGG + chr6_4:89791681-89791700 None:intergenic 25.0%
!!! ATTACATTTTGAAACCATGT+AGG - chr6_4:89791726-89791745 Msa1002970:CDS 25.0%
!!! AGAACTTGAAGATATTTTAG+GGG + chr6_4:89792121-89792140 None:intergenic 25.0%
!! CAAGAACTTGAAGATATTTT+AGG + chr6_4:89792123-89792142 None:intergenic 25.0%
TTAACCTGCATTATCAATTG+TGG - chr6_4:89788723-89788742 Msa1002970:three_prime_UTR 30.0%
TAACCTGCATTATCAATTGT+GGG - chr6_4:89788724-89788743 Msa1002970:three_prime_UTR 30.0%
ATGTTTAACGAACATGACTT+GGG + chr6_4:89788941-89788960 None:intergenic 30.0%
ATCAGTCAAGATATTCCAAA+TGG + chr6_4:89789185-89789204 None:intergenic 30.0%
! CTTTTTGGATCAATTTACTG+AGG + chr6_4:89789243-89789262 None:intergenic 30.0%
CTCAGTAAATTGATCCAAAA+AGG - chr6_4:89789241-89789260 Msa1002970:intron 30.0%
!!! TCATTTTTTATTAATCGGGC+GGG - chr6_4:89789410-89789429 Msa1002970:intron 30.0%
ATATCAACATTGTTGAGCTA+GGG + chr6_4:89789459-89789478 None:intergenic 30.0%
AATATCAACATTGTTGAGCT+AGG + chr6_4:89789460-89789479 None:intergenic 30.0%
TAGAGTAATTCCTACTTTCT+AGG - chr6_4:89789547-89789566 Msa1002970:intron 30.0%
GATATAAAAGTAGTAGGAAG+GGG - chr6_4:89789779-89789798 Msa1002970:CDS 30.0%
!!! TTGGTTTTGCTTCTTTGTAA+TGG - chr6_4:89789986-89790005 Msa1002970:intron 30.0%
! TATATTGCAAATTTAGGGCA+AGG + chr6_4:89790021-89790040 None:intergenic 30.0%
! AACAAAAGGCTTATTGATTG+AGG - chr6_4:89790041-89790060 Msa1002970:intron 30.0%
! ACAAAAGGCTTATTGATTGA+GGG - chr6_4:89790042-89790061 Msa1002970:intron 30.0%
TTCTTATCTACTCTAGTATG+AGG + chr6_4:89790275-89790294 None:intergenic 30.0%
ATAGGTCAACATGATTATGT+TGG - chr6_4:89790306-89790325 Msa1002970:intron 30.0%
TGCTTTAACAGTAACACTTT+AGG + chr6_4:89790346-89790365 None:intergenic 30.0%
! AAGTGTTACTGTTAAAGCAT+AGG - chr6_4:89790347-89790366 Msa1002970:intron 30.0%
ATGATTATATGCCATGAAGT+AGG + chr6_4:89790412-89790431 None:intergenic 30.0%
CATAACTTCCATGACATATA+TGG + chr6_4:89790469-89790488 None:intergenic 30.0%
GTAACTATACCTTTAAACTG+TGG - chr6_4:89790522-89790541 Msa1002970:intron 30.0%
TAAAGGTTAAGGTTGTAACT+TGG + chr6_4:89790779-89790798 None:intergenic 30.0%
! TTTTTCCCTGTTCGTAAATT+TGG - chr6_4:89790839-89790858 Msa1002970:intron 30.0%
TCAAACCAAATTTACGAACA+GGG + chr6_4:89790847-89790866 None:intergenic 30.0%
TTCAAACCAAATTTACGAAC+AGG + chr6_4:89790848-89790867 None:intergenic 30.0%
GTTCCATTATCTTAACAGAT+TGG - chr6_4:89790913-89790932 Msa1002970:intron 30.0%
TCTCCAATCTGTTAAGATAA+TGG + chr6_4:89790919-89790938 None:intergenic 30.0%
GGGTTAAAATTTGATGCTAA+AGG - chr6_4:89790955-89790974 Msa1002970:intron 30.0%
ATAGACTTCAAGATGATTGA+AGG - chr6_4:89791036-89791055 Msa1002970:intron 30.0%
TAGACTTCAAGATGATTGAA+GGG - chr6_4:89791037-89791056 Msa1002970:intron 30.0%
CAGAAGAATTCTAATAAGAG+GGG + chr6_4:89791120-89791139 None:intergenic 30.0%
!! CGCAAGTATTTTTCAAATGT+TGG - chr6_4:89791199-89791218 Msa1002970:intron 30.0%
!! TTTTGGTAACCAACTACAAA+TGG - chr6_4:89791510-89791529 Msa1002970:intron 30.0%
!!! TAGCTTTTGACTTGACAAAA+AGG - chr6_4:89791608-89791627 Msa1002970:CDS 30.0%
AAAAGAACCTTAAATCCGTA+AGG - chr6_4:89791945-89791964 Msa1002970:CDS 30.0%
AAAGAACCTTAAATCCGTAA+GGG - chr6_4:89791946-89791965 Msa1002970:CDS 30.0%
! AATATCTTCAAGTTCTTGAC+TGG - chr6_4:89792125-89792144 Msa1002970:five_prime_UTR 30.0%
ATCTTTGACTCAATCAACGT+AGG + chr6_4:89788683-89788702 None:intergenic 35.0%
GATGTTTAACGAACATGACT+TGG + chr6_4:89788942-89788961 None:intergenic 35.0%
TAAAGTCCCAGAATCATCAT+CGG + chr6_4:89789023-89789042 None:intergenic 35.0%
!! TGATGATTCTGGGACTTTAT+TGG - chr6_4:89789024-89789043 Msa1002970:intron 35.0%
CTTGACTGATTATGAAAGGT+TGG - chr6_4:89789195-89789214 Msa1002970:intron 35.0%
TCTTGCAGGTATAATGCAAT+TGG - chr6_4:89789281-89789300 Msa1002970:intron 35.0%
CTTGCAGGTATAATGCAATT+GGG - chr6_4:89789282-89789301 Msa1002970:intron 35.0%
TTGCAGGTATAATGCAATTG+GGG - chr6_4:89789283-89789302 Msa1002970:intron 35.0%
TAAGTTAGACACATTCACTC+AGG - chr6_4:89789482-89789501 Msa1002970:intron 35.0%
!! TTTTTGGTCTGTAAACGAAG+TGG + chr6_4:89789525-89789544 None:intergenic 35.0%
GTTTAGTTGCATGCTTGATT+TGG - chr6_4:89789658-89789677 Msa1002970:intron 35.0%
ACATAAAATGACCTTGTTGG+TGG + chr6_4:89789817-89789836 None:intergenic 35.0%
TCGACATAAAATGACCTTGT+TGG + chr6_4:89789820-89789839 None:intergenic 35.0%
! AAATTTAGGGCAAGGTCATA+AGG + chr6_4:89790013-89790032 None:intergenic 35.0%
! CAAAAGGCTTATTGATTGAG+GGG - chr6_4:89790043-89790062 Msa1002970:intron 35.0%
TTATCTACTCTAGTATGAGG+TGG + chr6_4:89790272-89790291 None:intergenic 35.0%
!!! GTTTTTTGTGACAGATAGAC+AGG - chr6_4:89790633-89790652 Msa1002970:intron 35.0%
! CCTTTAGAAATTCAATGGCA+CGG - chr6_4:89790793-89790812 Msa1002970:intron 35.0%
AGACTTCAAGATGATTGAAG+GGG - chr6_4:89791038-89791057 Msa1002970:intron 35.0%
! TTCAGCTCTTTGAAGGAAAA+TGG - chr6_4:89791064-89791083 Msa1002970:intron 35.0%
! AGGAAAATGGTCTATTTTGC+AGG - chr6_4:89791077-89791096 Msa1002970:intron 35.0%
! AAATGGTCTATTTTGCAGGT+AGG - chr6_4:89791081-89791100 Msa1002970:intron 35.0%
! AGTTTGCATGGTTTTTATGC+TGG + chr6_4:89791145-89791164 None:intergenic 35.0%
! TAGAGAAGTGCATAAAACTC+TGG + chr6_4:89791176-89791195 None:intergenic 35.0%
! ATTTTCACCATTTCCTATGC+TGG - chr6_4:89791336-89791355 Msa1002970:intron 35.0%
TTAGAAACTAGGACCATGTT+TGG + chr6_4:89791454-89791473 None:intergenic 35.0%
!!! GATTCTAGCTAGCGTTTTTT+TGG - chr6_4:89791493-89791512 Msa1002970:intron 35.0%
AAATGGAGTGCATCTTATCT+TGG - chr6_4:89791527-89791546 Msa1002970:intron 35.0%
TGGAAAGTCTGCTATTATTC+AGG - chr6_4:89791547-89791566 Msa1002970:CDS 35.0%
! TATTCAGGTTATTGACCAAG+TGG - chr6_4:89791562-89791581 Msa1002970:CDS 35.0%
! ATTCAGGTTATTGACCAAGT+GGG - chr6_4:89791563-89791582 Msa1002970:CDS 35.0%
ATCATAATCACAATCCCACT+TGG + chr6_4:89791580-89791599 None:intergenic 35.0%
CACATATTGAAAATTGGGGA+AGG + chr6_4:89791675-89791694 None:intergenic 35.0%
! ACTTGTTGAATACTCCTACA+TGG + chr6_4:89791743-89791762 None:intergenic 35.0%
AAGAACCTTAAATCCGTAAG+GGG - chr6_4:89791947-89791966 Msa1002970:CDS 35.0%
!! TTTGGTGTCAATTCTCACTT+AGG - chr6_4:89792068-89792087 Msa1002970:five_prime_UTR 35.0%
!! GATATTTTAGGGGCACAATA+TGG + chr6_4:89792111-89792130 None:intergenic 35.0%
!! TTGCCCACAATTGATAATGC+AGG + chr6_4:89788730-89788749 None:intergenic 40.0%
! TGAGGGTGTGAAATGAAAAG+GGG + chr6_4:89788918-89788937 None:intergenic 40.0%
! GTGAGGGTGTGAAATGAAAA+GGG + chr6_4:89788919-89788938 None:intergenic 40.0%
!! ATCATCATCGGTGTCGTTTA+AGG + chr6_4:89789011-89789030 None:intergenic 40.0%
AGTTGAAGATTCAGAGTCGT+TGG - chr6_4:89789063-89789082 Msa1002970:intron 40.0%
ATTCACGCAGAATTGAGTCT+AGG - chr6_4:89789134-89789153 Msa1002970:intron 40.0%
ACGCTTCACTTGATTCCATT+TGG - chr6_4:89789167-89789186 Msa1002970:intron 40.0%
! GAGCAAAATTGGGACCTTTT+TGG + chr6_4:89789258-89789277 None:intergenic 40.0%
TGCAAGAGTCGAGCAAAATT+GGG + chr6_4:89789268-89789287 None:intergenic 40.0%
!! CATGCTTGATTTGGCAAGTT+TGG - chr6_4:89789667-89789686 Msa1002970:intron 40.0%
!! GGTAACTTCTAGTTTGCTCA+GGG + chr6_4:89789845-89789864 None:intergenic 40.0%
!! TGGTAACTTCTAGTTTGCTC+AGG + chr6_4:89789846-89789865 None:intergenic 40.0%
TTAGATGCAGCCACTGTATT+AGG + chr6_4:89789900-89789919 None:intergenic 40.0%
! AGCATTTAAAACCGGTCCAA+CGG + chr6_4:89790170-89790189 None:intergenic 40.0%
! ATGTGAAGCATCCTACTTCA+TGG - chr6_4:89790398-89790417 Msa1002970:intron 40.0%
AGTTATGTATGCATCAGTCG+TGG - chr6_4:89790482-89790501 Msa1002970:intron 40.0%
GTTATGTATGCATCAGTCGT+GGG - chr6_4:89790483-89790502 Msa1002970:intron 40.0%
TCAGTACTCCCACAGTTTAA+AGG + chr6_4:89790534-89790553 None:intergenic 40.0%
TCTTGGTGAATGAAATGTCC+AGG - chr6_4:89790554-89790573 Msa1002970:intron 40.0%
CATCATAGCATAGCCAAGTA+TGG - chr6_4:89790705-89790724 Msa1002970:intron 40.0%
! CCGTGCCATTGAATTTCTAA+AGG + chr6_4:89790796-89790815 None:intergenic 40.0%
AGATGCACTCCATTTGTAGT+TGG + chr6_4:89791522-89791541 None:intergenic 40.0%
GCTAACTTCCTAGACAATGA+TGG - chr6_4:89791781-89791800 Msa1002970:CDS 40.0%
CTGCAAAACCATCATTGTCT+AGG + chr6_4:89791792-89791811 None:intergenic 40.0%
GTCGTGTTAATTTCACGAAC+CGG + chr6_4:89791845-89791864 None:intergenic 40.0%
TTGATGTTAAGCCGAAGATG+TGG - chr6_4:89791879-89791898 Msa1002970:CDS 40.0%
AGGAAAGTTTGCGTGGAAAC+TGG + chr6_4:89788842-89788861 None:intergenic 45.0%
AGAGAAGAGAAGGGTGGAAA+TGG + chr6_4:89788891-89788910 None:intergenic 45.0%
AGGGTGTGAAATGAAAAGGG+GGG + chr6_4:89788916-89788935 None:intergenic 45.0%
! GAGGGTGTGAAATGAAAAGG+GGG + chr6_4:89788917-89788936 None:intergenic 45.0%
! GGTGAGGGTGTGAAATGAAA+AGG + chr6_4:89788920-89788939 None:intergenic 45.0%
! AACGAACATGACTTGGGTGA+GGG + chr6_4:89788935-89788954 None:intergenic 45.0%
! TAACGAACATGACTTGGGTG+AGG + chr6_4:89788936-89788955 None:intergenic 45.0%
! TTGGAAGCGCGATACAAAGA+AGG + chr6_4:89788974-89788993 None:intergenic 45.0%
! TAAGGTGGTTGGGTTGTGTT+TGG + chr6_4:89788993-89789012 None:intergenic 45.0%
!! ATCATCGGTGTCGTTTAAGG+TGG + chr6_4:89789008-89789027 None:intergenic 45.0%
AACGACACCGATGATGATTC+TGG - chr6_4:89789013-89789032 Msa1002970:intron 45.0%
ACGACACCGATGATGATTCT+GGG - chr6_4:89789014-89789033 Msa1002970:intron 45.0%
! TGGGACTTTATTGGTGACAG+AGG - chr6_4:89789033-89789052 Msa1002970:intron 45.0%
! TCAGAGTCGTTGGTTGAAGA+TGG - chr6_4:89789073-89789092 Msa1002970:intron 45.0%
! CAGAGTCGTTGGTTGAAGAT+GGG - chr6_4:89789074-89789093 Msa1002970:intron 45.0%
! AGAGTCGTTGGTTGAAGATG+GGG - chr6_4:89789075-89789094 Msa1002970:intron 45.0%
! AGGTTGGCTGATTTCATTCC+TGG - chr6_4:89789211-89789230 Msa1002970:intron 45.0%
AATTTACTGAGGGCAAGACC+AGG + chr6_4:89789232-89789251 None:intergenic 45.0%
CTGCAAGAGTCGAGCAAAAT+TGG + chr6_4:89789269-89789288 None:intergenic 45.0%
! CAATTTTGCTCGACTCTTGC+AGG - chr6_4:89789267-89789286 Msa1002970:intron 45.0%
TAAACGAAGTGGCAAGCACA+AGG + chr6_4:89789514-89789533 None:intergenic 45.0%
TCACGAGGAACTGTGCTATA+AGG - chr6_4:89789628-89789647 Msa1002970:intron 45.0%
! AATGACCTTGTTGGTGGATG+AGG + chr6_4:89789811-89789830 None:intergenic 45.0%
TAGGGACCTTCCTAATACAG+TGG - chr6_4:89789887-89789906 Msa1002970:intron 45.0%
ATGCAGCCACTGTATTAGGA+AGG + chr6_4:89789896-89789915 None:intergenic 45.0%
ATCAAATACGGTCAGTCCGT+TGG - chr6_4:89790151-89790170 Msa1002970:intron 45.0%
ACTCTAGTATGAGGTGGTTG+TGG + chr6_4:89790266-89790285 None:intergenic 45.0%
!! AACTGTGGGAGTACTGATCT+TGG - chr6_4:89790537-89790556 Msa1002970:intron 45.0%
TCCAGGCAATACACATCAGT+TGG - chr6_4:89790571-89790590 Msa1002970:intron 45.0%
ACCAACTGATGTGTATTGCC+TGG + chr6_4:89790575-89790594 None:intergenic 45.0%
CCTTGCAGCAAAACCATACT+TGG + chr6_4:89790721-89790740 None:intergenic 45.0%
!! CCAAGTATGGTTTTGCTGCA+AGG - chr6_4:89790718-89790737 Msa1002970:intron 45.0%
ACAGATTGGAGAGCAGAACT+TGG - chr6_4:89790927-89790946 Msa1002970:intron 45.0%
GAGAGCAGAACTTGGCATTT+GGG - chr6_4:89790935-89790954 Msa1002970:intron 45.0%
GAATTGGAGACTCTTCCATC+TGG - chr6_4:89791000-89791019 Msa1002970:intron 45.0%
ATGTCACGCTTCATACCAGA+TGG + chr6_4:89791018-89791037 None:intergenic 45.0%
! GGGGATTTTCAGCTCTTTGA+AGG - chr6_4:89791057-89791076 Msa1002970:intron 45.0%
! ACCATTTCCTATGCTGGTCT+TGG - chr6_4:89791342-89791361 Msa1002970:intron 45.0%
TCCAAGACCAGCATAGGAAA+TGG + chr6_4:89791346-89791365 None:intergenic 45.0%
! GTGTTTTCCAAGACCAGCAT+AGG + chr6_4:89791352-89791371 None:intergenic 45.0%
! GTTTTGCAGACTTTCAGCGA+TGG - chr6_4:89791803-89791822 Msa1002970:CDS 45.0%
TTTCAGCGATGGAAGTTGTG+AGG - chr6_4:89791814-89791833 Msa1002970:CDS 45.0%
CTTCACCCCTTACGGATTTA+AGG + chr6_4:89791955-89791974 None:intergenic 45.0%
TTTCAGAGCTTCACCCCTTA+CGG + chr6_4:89791963-89791982 None:intergenic 45.0%
CTTAGGTAAAGCTGCAAGCT+TGG - chr6_4:89792085-89792104 Msa1002970:five_prime_UTR 45.0%
AGGGAGTAGGAAAGTTTGCG+TGG + chr6_4:89788849-89788868 None:intergenic 50.0%
AGAAGGGTGGAAATGGAAGC+CGG + chr6_4:89788884-89788903 None:intergenic 50.0%
!! CGGTGTCGTTTAAGGTGGTT+GGG + chr6_4:89789003-89789022 None:intergenic 50.0%
!! TCGGTGTCGTTTAAGGTGGT+TGG + chr6_4:89789004-89789023 None:intergenic 50.0%
TTCCTCCTCATCCACCAACA+AGG - chr6_4:89789803-89789822 Msa1002970:CDS 50.0%
GGCGTCTATTAGGGTAATGC+AGG + chr6_4:89790202-89790221 None:intergenic 50.0%
GTGGTTGTGGGCGTCTATTA+GGG + chr6_4:89790211-89790230 None:intergenic 50.0%
AGTGGTTGTGGGCGTCTATT+AGG + chr6_4:89790212-89790231 None:intergenic 50.0%
TAATAGACGCCCACAACCAC+TGG - chr6_4:89790211-89790230 Msa1002970:intron 50.0%
CTAGTATGAGGTGGTTGTGG+TGG + chr6_4:89790263-89790282 None:intergenic 50.0%
AAAGCATAGGCGTCCATGAG+TGG - chr6_4:89790360-89790379 Msa1002970:intron 50.0%
ATGTATGCATCAGTCGTGGG+TGG - chr6_4:89790486-89790505 Msa1002970:intron 50.0%
GGAGAGCAGAACTTGGCATT+TGG - chr6_4:89790934-89790953 Msa1002970:intron 50.0%
TGGAAGTTGTGAGGACTCTC+CGG - chr6_4:89791823-89791842 Msa1002970:CDS 50.0%
TCTACCCTCTATCAGCCCAA+CGG + chr6_4:89791909-89791928 None:intergenic 50.0%
!! GTGGTGATGGTTGAGGGAGT+AGG + chr6_4:89788862-89788881 None:intergenic 55.0%
ACTCCCTCAACCATCACCAC+CGG - chr6_4:89788862-89788881 Msa1002970:CDS 55.0%
!! AAGCCGGTGGTGATGGTTGA+GGG + chr6_4:89788868-89788887 None:intergenic 55.0%
GAAATGGAAGCCGGTGGTGA+TGG + chr6_4:89788875-89788894 None:intergenic 55.0%
AGGGGGGTGAGAGAAGAGAA+GGG + chr6_4:89788900-89788919 None:intergenic 55.0%
AAGGGGGGTGAGAGAAGAGA+AGG + chr6_4:89788901-89788920 None:intergenic 55.0%
GACACAACACAGCTCTCACG+AGG - chr6_4:89789613-89789632 Msa1002970:intron 55.0%
! GACCTTGTTGGTGGATGAGG+AGG + chr6_4:89789808-89789827 None:intergenic 55.0%
ATACGGTCAGTCCGTTGGAC+CGG - chr6_4:89790156-89790175 Msa1002970:intron 55.0%
TATGCATCAGTCGTGGGTGG+TGG - chr6_4:89790489-89790508 Msa1002970:intron 55.0%
! CTGGTTTGCGCGAGTTTGCA+TGG + chr6_4:89791157-89791176 None:intergenic 55.0%
CCAACGGGCAACCACATCTT+CGG + chr6_4:89791893-89791912 None:intergenic 55.0%
CGAAGATGTGGTTGCCCGTT+GGG - chr6_4:89791891-89791910 Msa1002970:CDS 55.0%
TTGCCCGTTGGGCTGATAGA+GGG - chr6_4:89791902-89791921 Msa1002970:CDS 55.0%
CTACCCTCTATCAGCCCAAC+GGG + chr6_4:89791908-89791927 None:intergenic 55.0%
!! GAAGCCGGTGGTGATGGTTG+AGG + chr6_4:89788869-89788888 None:intergenic 60.0%
AGGGTGGAAATGGAAGCCGG+TGG + chr6_4:89788881-89788900 None:intergenic 60.0%
GGGGTGAGAGAAGAGAAGGG+TGG + chr6_4:89788897-89788916 None:intergenic 60.0%
GTGGCTACGCCAGTGGTTGT+GGG + chr6_4:89790223-89790242 None:intergenic 60.0%
CCGAAGATGTGGTTGCCCGT+TGG - chr6_4:89791890-89791909 Msa1002970:CDS 60.0%
GTTGCCCGTTGGGCTGATAG+AGG - chr6_4:89791901-89791920 Msa1002970:CDS 60.0%
GGTGGCTACGCCAGTGGTTG+TGG + chr6_4:89790224-89790243 None:intergenic 65.0%
GGTTGTGGTGGCTACGCCAG+TGG + chr6_4:89790230-89790249 None:intergenic 65.0%
GGCGTAGCCACCACAACCAC+TGG - chr6_4:89790232-89790251 Msa1002970:intron 65.0%
GGCTACGCCAGTGGTTGTGG+TGG + chr6_4:89790221-89790240 None:intergenic 65.0%
GGTGGCTACGCCAGTGGTTG+TGG + chr6_4:89790224-89790243 None:intergenic 65.0%
GGTTGTGGTGGCTACGCCAG+TGG + chr6_4:89790230-89790249 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr6_4 gene 89788680 89792149 89788680 ID=Msa1002970;Name=Msa1002970
chr6_4 mRNA 89788680 89792149 89788680 ID=Msa1002970-mRNA-1;Parent=Msa1002970;Name=Msa1002970-mRNA-1;_AED=0.01;_eAED=0.01;_QI=147|1|1|1|1|1|3|128|279
chr6_4 exon 89788680 89789017 89788680 ID=Msa1002970-mRNA-1:exon:17491;Parent=Msa1002970-mRNA-1
chr6_4 exon 89789731 89789898 89789731 ID=Msa1002970-mRNA-1:exon:17490;Parent=Msa1002970-mRNA-1
chr6_4 exon 89791541 89792149 89791541 ID=Msa1002970-mRNA-1:exon:17489;Parent=Msa1002970-mRNA-1
chr6_4 five_prime_UTR 89792003 89792149 89792003 ID=Msa1002970-mRNA-1:five_prime_utr;Parent=Msa1002970-mRNA-1
chr6_4 CDS 89791541 89792002 89791541 ID=Msa1002970-mRNA-1:cds;Parent=Msa1002970-mRNA-1
chr6_4 CDS 89789731 89789898 89789731 ID=Msa1002970-mRNA-1:cds;Parent=Msa1002970-mRNA-1
chr6_4 CDS 89788808 89789017 89788808 ID=Msa1002970-mRNA-1:cds;Parent=Msa1002970-mRNA-1
chr6_4 three_prime_UTR 89788680 89788807 89788680 ID=Msa1002970-mRNA-1:three_prime_utr;Parent=Msa1002970-mRNA-1
Gene Sequence

>Msa1002970

ATGCGCGCGATTCCAGTTTCCACGCAAACTTTCCTACTCCCTCAACCATCACCACCGGCTTCCATTTCCACCCTTCTCTTCTCTCACCCCCCTTTTCATTTCACACCCTCACCCAAGTCATGTTCGTTAAACATCAACTTTACTCCTTCTTTGTATCGCGCTTCCAAACACAACCCAACCACCTTAAACGACACCGATGATGATTCTGGGACTTTATTGGTGACAGAGGATGATGAAGTTGAAGATTCAGAGTCGTTGGTTGAAGATGGGGTGTACATAGAAGTCACGAAGCTTGAGAATGAGAAGAATTCACGCAGAATTGAGTCTAGGATTTCTATCGACGCTTCACTTGATTCCATTTGGAATATCTTGACTGATTATGAAAGGTTGGCTGATTTCATTCCTGGTCTTGCCCTCAGTAAATTGATCCAAAAAGGTCCCAATTTTGCTCGACTCTTGCAGATTGGAGAGCAGAACTTGGCATTTGGGTTAAAATTTGATGCTAAAGGAGTTATAGATTGTTTTGAGAAAGAATTGGAGACTCTTCCATCTGGTATGAAGCGTGACATAGACTTCAAGATGATTGAAGGGGATTTTCAGCTCTTTGAAGGAAAATGGTCTATTTTGCAGACTTTCAGCGATGGAAGTTGTGAGGACTCTCCGGTTCGTGAAATTAACACGACACTTTCATACATTGTTGATGTTAAGCCGAAGATGTGGTTGCCCGTTGGGCTGATAGAGGGTAGACTTTGCAAAGAGATAAAAAAGAACCTTAAATCCGTAAGGGGTGAAGCTCTGAAAGCTACTGACAGAACTGTTAATGCAAATCAATTTGAATGA

Protein sequence

>Msa1002970

MRAIPVSTQTFLLPQPSPPASISTLLFSHPPFHFTPSPKSCSLNINFTPSLYRASKHNPTTLNDTDDDSGTLLVTEDDEVEDSESLVEDGVYIEVTKLENEKNSRRIESRISIDASLDSIWNILTDYERLADFIPGLALSKLIQKGPNFARLLQIGEQNLAFGLKFDAKGVIDCFEKELETLPSGMKRDIDFKMIEGDFQLFEGKWSILQTFSDGSCEDSPVREINTTLSYIVDVKPKMWLPVGLIEGRLCKEIKKNLKSVRGEALKATDRTVNANQFE*