AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0173600


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0173600 MtrunA17_Chr1g0193701 86.477 281 29 3 1 279 1 274 9.18e-174 480
Msa0173600 MtrunA17_Chr8g0384911 37.975 158 82 4 105 261 107 249 2.27e-20 90.9
Msa0173600 MtrunA17_Chr8g0384911 28.743 167 97 4 98 262 350 496 7.32e-15 74.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0173600 AT4G01650.2 59.694 196 73 3 83 274 16 209 5.08e-79 238
Msa0173600 AT4G01650.1 59.694 196 73 3 83 274 93 286 5.45e-78 238
Msa0173600 AT4G01650.3 64.885 131 42 2 83 211 93 221 8.12e-56 179
Msa0173600 AT5G08720.1 38.415 164 85 4 105 267 97 245 6.30e-22 95.9
Msa0173600 AT5G08720.1 27.717 184 111 4 98 279 328 491 2.18e-13 70.5

Find 80 sgRNAs with CRISPR-Local

Find 247 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTTCACCCCTTACGGATTTA+AGG 0.165307 1_4:+58934419 None:intergenic
CTGCAAGAGTCGAGCAAAAT+TGG 0.187080 1_4:+58937105 None:intergenic
ATCATCATCGGTGTCGTTTA+AGG 0.240676 1_4:+58937363 None:intergenic
AACGACACCGATGATGATTC+TGG 0.246364 1_4:-58937358 Msa0173600:CDS
TTCAGCTCTTTGAAGGAAAA+TGG 0.271309 1_4:-58935308 Msa0173600:CDS
TGATGATTCTGGGACTTTAT+TGG 0.289143 1_4:-58937347 Msa0173600:CDS
AGGTTGGCTGATTTCATTCC+TGG 0.313493 1_4:-58937160 Msa0173600:CDS
AGAGAAGAGAAGGGTGGAAA+TGG 0.316503 1_4:+58937483 None:intergenic
CTCAGTAAATTGATCCAAAA+AGG 0.327199 1_4:-58937130 Msa0173600:CDS
GGAGAGCAGAACTTGGCATT+TGG 0.347544 1_4:-58935438 Msa0173600:CDS
ACGCTTCACTTGATTCCATT+TGG 0.351261 1_4:-58937204 Msa0173600:CDS
GAGAGCAGAACTTGGCATTT+GGG 0.357576 1_4:-58935437 Msa0173600:CDS
AGGAAAGTTTGCGTGGAAAC+TGG 0.376996 1_4:+58937532 None:intergenic
TAATACAAGTAAAGTTCATT+TGG 0.385292 1_4:-58934321 Msa0173600:three_prime_UTR
CGAAGATGTGGTTGCCCGTT+GGG 0.403416 1_4:-58934480 Msa0173600:CDS
TCGGTGTCGTTTAAGGTGGT+TGG 0.404356 1_4:+58937370 None:intergenic
CGGTGTCGTTTAAGGTGGTT+GGG 0.405611 1_4:+58937371 None:intergenic
TCAGAGTCGTTGGTTGAAGA+TGG 0.419018 1_4:-58937298 Msa0173600:CDS
TTTCAGAGCTTCACCCCTTA+CGG 0.429324 1_4:+58934411 None:intergenic
TAAGGTGGTTGGGTTGTGTT+TGG 0.430644 1_4:+58937381 None:intergenic
AATATCTTCAAGTTCTTGAC+TGG 0.431794 1_4:-58934246 Msa0173600:three_prime_UTR
CTTAGGTAAAGCTGCAAGCT+TGG 0.443334 1_4:-58934286 Msa0173600:three_prime_UTR
CTACCCTCTATCAGCCCAAC+GGG 0.445050 1_4:+58934466 None:intergenic
GGGTTAAAATTTGATGCTAA+AGG 0.447148 1_4:-58935417 Msa0173600:CDS
CCAACGGGCAACCACATCTT+CGG 0.447460 1_4:+58934481 None:intergenic
ATCAGTCAAGATATTCCAAA+TGG 0.452946 1_4:+58937189 None:intergenic
TTTGGTGTCAATTCTCACTT+AGG 0.457581 1_4:-58934303 Msa0173600:three_prime_UTR
TGCAAGAGTCGAGCAAAATT+GGG 0.469520 1_4:+58937106 None:intergenic
GTCGTGTTAATTTCACGAAC+CGG 0.472895 1_4:+58934529 None:intergenic
CAGAGTCGTTGGTTGAAGAT+GGG 0.478415 1_4:-58937297 Msa0173600:CDS
ATAGACTTCAAGATGATTGA+AGG 0.479763 1_4:-58935336 Msa0173600:CDS
TTAACCTGCATTATCAATTG+TGG 0.483192 1_4:-58937648 Msa0173600:five_prime_UTR
CTTGACTGATTATGAAAGGT+TGG 0.487454 1_4:-58937176 Msa0173600:CDS
ATAAGAGAAAGAGAATATAC+AGG 0.491599 1_4:-58937594 Msa0173600:five_prime_UTR
GAGGGTGTGAAATGAAAAGG+GGG 0.500049 1_4:+58937457 None:intergenic
TTGCCCACAATTGATAATGC+AGG 0.500345 1_4:+58937644 None:intergenic
ACGACACCGATGATGATTCT+GGG 0.503280 1_4:-58937357 Msa0173600:CDS
TAACCTGCATTATCAATTGT+GGG 0.503628 1_4:-58937647 Msa0173600:five_prime_UTR
AAAAGAACCTTAAATCCGTA+AGG 0.508599 1_4:-58934426 Msa0173600:CDS
GTGAGGGTGTGAAATGAAAA+GGG 0.510813 1_4:+58937455 None:intergenic
GGTGAGGGTGTGAAATGAAA+AGG 0.512236 1_4:+58937454 None:intergenic
GAAATGGAAGCCGGTGGTGA+TGG 0.514183 1_4:+58937499 None:intergenic
AAGCCGGTGGTGATGGTTGA+GGG 0.514399 1_4:+58937506 None:intergenic
CCGAAGATGTGGTTGCCCGT+TGG 0.516968 1_4:-58934481 Msa0173600:CDS
AGTTGAAGATTCAGAGTCGT+TGG 0.518855 1_4:-58937308 Msa0173600:CDS
GAAGCCGGTGGTGATGGTTG+AGG 0.519019 1_4:+58937505 None:intergenic
GAATTGGAGACTCTTCCATC+TGG 0.520472 1_4:-58935372 Msa0173600:CDS
TGAGGGTGTGAAATGAAAAG+GGG 0.522808 1_4:+58937456 None:intergenic
TGGAAGTTGTGAGGACTCTC+CGG 0.533175 1_4:-58934548 Msa0173600:CDS
GTTGCCCGTTGGGCTGATAG+AGG 0.535819 1_4:-58934470 Msa0173600:CDS
ACAGATTGGAGAGCAGAACT+TGG 0.540322 1_4:-58935445 Msa0173600:intron
AAAGAACCTTAAATCCGTAA+GGG 0.553093 1_4:-58934425 Msa0173600:CDS
GATGTTTAACGAACATGACT+TGG 0.555776 1_4:+58937432 None:intergenic
TAGACTTCAAGATGATTGAA+GGG 0.561714 1_4:-58935335 Msa0173600:CDS
ATTCACGCAGAATTGAGTCT+AGG 0.570895 1_4:-58937237 Msa0173600:CDS
AGAGTCGTTGGTTGAAGATG+GGG 0.585019 1_4:-58937296 Msa0173600:CDS
ATCATCGGTGTCGTTTAAGG+TGG 0.588547 1_4:+58937366 None:intergenic
TTGGAAGCGCGATACAAAGA+AGG 0.590076 1_4:+58937400 None:intergenic
ATGTCACGCTTCATACCAGA+TGG 0.591702 1_4:+58935357 None:intergenic
AGGGAGTAGGAAAGTTTGCG+TGG 0.591738 1_4:+58937525 None:intergenic
AACGAACATGACTTGGGTGA+GGG 0.599864 1_4:+58937439 None:intergenic
TTGCCCGTTGGGCTGATAGA+GGG 0.601510 1_4:-58934469 Msa0173600:CDS
ATATCTTGACTGATTATGAA+AGG 0.602548 1_4:-58937180 Msa0173600:CDS
TGGGACTTTATTGGTGACAG+AGG 0.604754 1_4:-58937338 Msa0173600:CDS
AGAAGGGTGGAAATGGAAGC+CGG 0.605384 1_4:+58937490 None:intergenic
ATGTTTAACGAACATGACTT+GGG 0.610648 1_4:+58937433 None:intergenic
GTGGTGATGGTTGAGGGAGT+AGG 0.613276 1_4:+58937512 None:intergenic
AGACTTCAAGATGATTGAAG+GGG 0.615498 1_4:-58935334 Msa0173600:CDS
AATTTACTGAGGGCAAGACC+AGG 0.620856 1_4:+58937142 None:intergenic
AAGAACCTTAAATCCGTAAG+GGG 0.627039 1_4:-58934424 Msa0173600:CDS
GGGGTGAGAGAAGAGAAGGG+TGG 0.628709 1_4:+58937477 None:intergenic
TAACGAACATGACTTGGGTG+AGG 0.630441 1_4:+58937438 None:intergenic
TTTCAGCGATGGAAGTTGTG+AGG 0.646341 1_4:-58934557 Msa0173600:CDS
TCTACCCTCTATCAGCCCAA+CGG 0.653017 1_4:+58934465 None:intergenic
TAAAGTCCCAGAATCATCAT+CGG 0.654239 1_4:+58937351 None:intergenic
ACTCCCTCAACCATCACCAC+CGG 0.663875 1_4:-58937509 Msa0173600:CDS
TTGATGTTAAGCCGAAGATG+TGG 0.693995 1_4:-58934492 Msa0173600:CDS
ATCTTTGACTCAATCAACGT+AGG 0.697511 1_4:+58937691 None:intergenic
AGGGTGTGAAATGAAAAGGG+GGG 0.736177 1_4:+58937458 None:intergenic
AGGGTGGAAATGGAAGCCGG+TGG 0.756426 1_4:+58937493 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ACTTTTCATTTTTTATTAAT+CGG - chr1_4:58934969-58934988 Msa0173600:intron 10.0%
!!! CTTTTCATTTTTTATTAATC+GGG - chr1_4:58934970-58934989 Msa0173600:intron 15.0%
!! AATACACATAATCTTTAATA+CGG + chr1_4:58935156-58935175 None:intergenic 15.0%
!!! ACTTGATTTTATTAAATTCA+CGG - chr1_4:58935312-58935331 Msa0173600:CDS 15.0%
!! TTGTTTATATTGCAAATTTA+GGG + chr1_4:58935590-58935609 None:intergenic 15.0%
!! TTTGTTTATATTGCAAATTT+AGG + chr1_4:58935591-58935610 None:intergenic 15.0%
!! AAATTTGCAATATAAACAAA+AGG - chr1_4:58935591-58935610 Msa0173600:intron 15.0%
!!! ATTGTTATTTTCATCAAATA+CGG - chr1_4:58935703-58935722 Msa0173600:intron 15.0%
!! ATAAGAAGAAAAAAAAACAT+AGG - chr1_4:58935851-58935870 Msa0173600:intron 15.0%
!!! ATTTTCTTGAAAAGAAAATT+TGG - chr1_4:58936433-58936452 Msa0173600:intron 15.0%
!! TCGAAAACAAAATAAAAATA+AGG + chr1_4:58936845-58936864 None:intergenic 15.0%
!! TTGTAATTAAAAGTAAAAAC+AGG - chr1_4:58936963-58936982 Msa0173600:intron 15.0%
!!! TTATGTAAATTTTAGAAACT+AGG + chr1_4:58937030-58937049 None:intergenic 15.0%
!! TAAAATTTACATAAACTTAG+TGG - chr1_4:58937036-58937055 Msa0173600:intron 15.0%
!!! TAGGAATTACTCTAATTTTT+TGG + chr1_4:58935105-58935124 None:intergenic 20.0%
!! TAATCTTTAATACGGATAAT+GGG + chr1_4:58935148-58935167 None:intergenic 20.0%
!! ATAATCTTTAATACGGATAA+TGG + chr1_4:58935149-58935168 None:intergenic 20.0%
!! GTATTAAAGATTATGTGTAT+TGG - chr1_4:58935155-58935174 Msa0173600:intron 20.0%
!! ATTCTAGATATAAAAGTAGT+AGG - chr1_4:58935337-58935356 Msa0173600:CDS 20.0%
!!! AAACTGTATAGTTCTAAATA+GGG - chr1_4:58935433-58935452 Msa0173600:CDS 20.0%
!!! AAATGCTGTATTTTATAGTT+TGG - chr1_4:58935531-58935550 Msa0173600:intron 20.0%
!!! TATGTTTTAGCATTTAAAAC+CGG + chr1_4:58935742-58935761 None:intergenic 20.0%
!!! AGGATATGATTTTGAATATT+AGG - chr1_4:58936216-58936235 Msa0173600:intron 20.0%
!! GGTTAAAATTAAACTGTATA+TGG - chr1_4:58936237-58936256 Msa0173600:intron 20.0%
!!! AAATAAGGTATCATTTAAAG+AGG + chr1_4:58936830-58936849 None:intergenic 20.0%
!! TGGTGAAAATAATGAAAAAT+TGG + chr1_4:58936890-58936909 None:intergenic 20.0%
!!! ACAATTTTTTAAACCAAACA+TGG - chr1_4:58937003-58937022 Msa0173600:intron 20.0%
!! AATTGCACATATTGAAAATT+GGG + chr1_4:58937244-58937263 None:intergenic 20.0%
!! TAATACAAGTAAAGTTCATT+TGG - chr1_4:58937614-58937633 Msa0173600:five_prime_UTR 20.0%
!!! AAGAACTTGAAGATATTTTA+GGG + chr1_4:58937686-58937705 None:intergenic 20.0%
! ATAAGAGAAAGAGAATATAC+AGG - chr1_4:58934341-58934360 Msa0173600:three_prime_UTR 25.0%
! ATATCTTGACTGATTATGAA+AGG - chr1_4:58934755-58934774 Msa0173600:intron 25.0%
!! TTTTTGGATCAATTTACTGA+GGG + chr1_4:58934806-58934825 None:intergenic 25.0%
! ATATTGTATTAGTGTTGTGT+TGG - chr1_4:58934936-58934955 Msa0173600:intron 25.0%
! TATTGTATTAGTGTTGTGTT+GGG - chr1_4:58934937-58934956 Msa0173600:intron 25.0%
!!! TTCATTTTTTATTAATCGGG+CGG - chr1_4:58934973-58934992 Msa0173600:intron 25.0%
! AATAATACAACCTAGAAAGT+AGG + chr1_4:58935124-58935143 None:intergenic 25.0%
! TAGATATAAAAGTAGTAGGA+AGG - chr1_4:58935341-58935360 Msa0173600:CDS 25.0%
! AGATATAAAAGTAGTAGGAA+GGG - chr1_4:58935342-58935361 Msa0173600:CDS 25.0%
!! TTAGAACTATACAGTTTGTT+TGG + chr1_4:58935430-58935449 None:intergenic 25.0%
!!! CAAACTGTATAGTTCTAAAT+AGG - chr1_4:58935432-58935451 Msa0173600:CDS 25.0%
!! GTTTTCAATTCAATGTAGTT+TGG - chr1_4:58935646-58935665 Msa0173600:intron 25.0%
! TTAAAATAAAAAGCCACTCA+TGG + chr1_4:58935939-58935958 None:intergenic 25.0%
! TATGATTTCCATATATGTCA+TGG - chr1_4:58936021-58936040 Msa0173600:intron 25.0%
! TAACTATACCTTTAAACTGT+GGG - chr1_4:58936086-58936105 Msa0173600:intron 25.0%
! TAACTTGGAGAAAGTAAATT+AGG + chr1_4:58936327-58936346 None:intergenic 25.0%
!! CATTGAATTTCTAAAGGTTA+AGG + chr1_4:58936353-58936372 None:intergenic 25.0%
!! CTTAACCTTTAGAAATTCAA+TGG - chr1_4:58936351-58936370 Msa0173600:intron 25.0%
!!! AGATTGTTTTGAGAAAGAAT+TGG - chr1_4:58936547-58936566 Msa0173600:intron 25.0%
!!! TTGGATTTTTAGAACTGAAT+AGG - chr1_4:58936782-58936801 Msa0173600:intron 25.0%
! AAAAACAGGAGTTGAAAATT+AGG - chr1_4:58936977-58936996 Msa0173600:intron 25.0%
! ATTGCACATATTGAAAATTG+GGG + chr1_4:58937243-58937262 None:intergenic 25.0%
! CAATTGCACATATTGAAAAT+TGG + chr1_4:58937245-58937264 None:intergenic 25.0%
!!! ATTACATTTTGAAACCATGT+AGG - chr1_4:58937290-58937309 Msa0173600:CDS 25.0%
!!! AGAACTTGAAGATATTTTAG+GGG + chr1_4:58937685-58937704 None:intergenic 25.0%
!! CAAGAACTTGAAGATATTTT+AGG + chr1_4:58937687-58937706 None:intergenic 25.0%
TTAACCTGCATTATCAATTG+TGG - chr1_4:58934287-58934306 Msa0173600:three_prime_UTR 30.0%
TAACCTGCATTATCAATTGT+GGG - chr1_4:58934288-58934307 Msa0173600:three_prime_UTR 30.0%
ATGTTTAACGAACATGACTT+GGG + chr1_4:58934505-58934524 None:intergenic 30.0%
ATCAGTCAAGATATTCCAAA+TGG + chr1_4:58934749-58934768 None:intergenic 30.0%
! CTTTTTGGATCAATTTACTG+AGG + chr1_4:58934807-58934826 None:intergenic 30.0%
CTCAGTAAATTGATCCAAAA+AGG - chr1_4:58934805-58934824 Msa0173600:intron 30.0%
!!! TCATTTTTTATTAATCGGGC+GGG - chr1_4:58934974-58934993 Msa0173600:intron 30.0%
ATATCAACATTGTTGAGCTA+GGG + chr1_4:58935023-58935042 None:intergenic 30.0%
AATATCAACATTGTTGAGCT+AGG + chr1_4:58935024-58935043 None:intergenic 30.0%
TAGAGTAATTCCTACTTTCT+AGG - chr1_4:58935111-58935130 Msa0173600:intron 30.0%
GATATAAAAGTAGTAGGAAG+GGG - chr1_4:58935343-58935362 Msa0173600:CDS 30.0%
!!! TTGGTTTTGCTTCTTTGTAA+TGG - chr1_4:58935550-58935569 Msa0173600:intron 30.0%
! TATATTGCAAATTTAGGGCA+AGG + chr1_4:58935585-58935604 None:intergenic 30.0%
! AACAAAAGGCTTATTGATTG+AGG - chr1_4:58935605-58935624 Msa0173600:intron 30.0%
! ACAAAAGGCTTATTGATTGA+GGG - chr1_4:58935606-58935625 Msa0173600:intron 30.0%
TTCTTATCTACTCTAGTATG+AGG + chr1_4:58935838-58935857 None:intergenic 30.0%
ATAGGTCAACATGATTATGT+TGG - chr1_4:58935869-58935888 Msa0173600:intron 30.0%
TGCTTTAACAGTAACACTTT+AGG + chr1_4:58935909-58935928 None:intergenic 30.0%
! AAGTGTTACTGTTAAAGCAT+AGG - chr1_4:58935910-58935929 Msa0173600:intron 30.0%
ATGATTATATGCCATGAAGT+AGG + chr1_4:58935975-58935994 None:intergenic 30.0%
CATAACTTCCATGACATATA+TGG + chr1_4:58936032-58936051 None:intergenic 30.0%
GTAACTATACCTTTAAACTG+TGG - chr1_4:58936085-58936104 Msa0173600:intron 30.0%
TAAAGGTTAAGGTTGTAACT+TGG + chr1_4:58936342-58936361 None:intergenic 30.0%
! TTTTTCCCTGTTCGTAAATT+TGG - chr1_4:58936402-58936421 Msa0173600:intron 30.0%
TCAAACCAAATTTACGAACA+GGG + chr1_4:58936410-58936429 None:intergenic 30.0%
TTCAAACCAAATTTACGAAC+AGG + chr1_4:58936411-58936430 None:intergenic 30.0%
GTTCCATTATCTTAACAGAT+TGG - chr1_4:58936476-58936495 Msa0173600:intron 30.0%
TCTCCAATCTGTTAAGATAA+TGG + chr1_4:58936482-58936501 None:intergenic 30.0%
GGGTTAAAATTTGATGCTAA+AGG - chr1_4:58936518-58936537 Msa0173600:intron 30.0%
ATAGACTTCAAGATGATTGA+AGG - chr1_4:58936599-58936618 Msa0173600:intron 30.0%
TAGACTTCAAGATGATTGAA+GGG - chr1_4:58936600-58936619 Msa0173600:intron 30.0%
CAGAAGAATTCTAATAAGAG+GGG + chr1_4:58936683-58936702 None:intergenic 30.0%
CCAGAAGAATTCTAATAAGA+GGG + chr1_4:58936684-58936703 None:intergenic 30.0%
TCCAGAAGAATTCTAATAAG+AGG + chr1_4:58936685-58936704 None:intergenic 30.0%
!! CGCAAGTATTTTTCAAATGT+TGG - chr1_4:58936763-58936782 Msa0173600:intron 30.0%
!! TTTTGGTAACCAACTACAAA+TGG - chr1_4:58937074-58937093 Msa0173600:intron 30.0%
!!! TAGCTTTTGACTTGACAAAA+AGG - chr1_4:58937172-58937191 Msa0173600:CDS 30.0%
AAAAGAACCTTAAATCCGTA+AGG - chr1_4:58937509-58937528 Msa0173600:CDS 30.0%
AAAGAACCTTAAATCCGTAA+GGG - chr1_4:58937510-58937529 Msa0173600:CDS 30.0%
! AATATCTTCAAGTTCTTGAC+TGG - chr1_4:58937689-58937708 Msa0173600:five_prime_UTR 30.0%
ATCTTTGACTCAATCAACGT+AGG + chr1_4:58934247-58934266 None:intergenic 35.0%
GATGTTTAACGAACATGACT+TGG + chr1_4:58934506-58934525 None:intergenic 35.0%
TAAAGTCCCAGAATCATCAT+CGG + chr1_4:58934587-58934606 None:intergenic 35.0%
!! TGATGATTCTGGGACTTTAT+TGG - chr1_4:58934588-58934607 Msa0173600:intron 35.0%
CTTGACTGATTATGAAAGGT+TGG - chr1_4:58934759-58934778 Msa0173600:intron 35.0%
TCTTGCAGGTATAATGCAAT+TGG - chr1_4:58934845-58934864 Msa0173600:intron 35.0%
CTTGCAGGTATAATGCAATT+GGG - chr1_4:58934846-58934865 Msa0173600:intron 35.0%
TTGCAGGTATAATGCAATTG+GGG - chr1_4:58934847-58934866 Msa0173600:intron 35.0%
TAAGTTAGACACATTCACTC+AGG - chr1_4:58935046-58935065 Msa0173600:intron 35.0%
!! TTTTTGGTCTGTAAACGAAG+TGG + chr1_4:58935089-58935108 None:intergenic 35.0%
TATGTGTATTGGACACAACA+CGG - chr1_4:58935166-58935185 Msa0173600:intron 35.0%
GTTTAGTTGCATGCTTGATT+TGG - chr1_4:58935222-58935241 Msa0173600:intron 35.0%
ACATAAAATGACCTTGTTGG+TGG + chr1_4:58935381-58935400 None:intergenic 35.0%
TCGACATAAAATGACCTTGT+TGG + chr1_4:58935384-58935403 None:intergenic 35.0%
! AAATTTAGGGCAAGGTCATA+AGG + chr1_4:58935577-58935596 None:intergenic 35.0%
! CAAAAGGCTTATTGATTGAG+GGG - chr1_4:58935607-58935626 Msa0173600:intron 35.0%
TTATCTACTCTAGTATGAGG+TGG + chr1_4:58935835-58935854 None:intergenic 35.0%
!!! GTTTTTTGTGACAGATAGAC+AGG - chr1_4:58936196-58936215 Msa0173600:intron 35.0%
! CCTTTAGAAATTCAATGGCA+CGG - chr1_4:58936356-58936375 Msa0173600:intron 35.0%
AGACTTCAAGATGATTGAAG+GGG - chr1_4:58936601-58936620 Msa0173600:intron 35.0%
! TTCAGCTCTTTGAAGGAAAA+TGG - chr1_4:58936627-58936646 Msa0173600:intron 35.0%
! AGGAAAATGGTCTATTTTGC+AGG - chr1_4:58936640-58936659 Msa0173600:intron 35.0%
! AAATGGTCTATTTTGCAGGT+AGG - chr1_4:58936644-58936663 Msa0173600:intron 35.0%
CCCTCTTATTAGAATTCTTC+TGG - chr1_4:58936681-58936700 Msa0173600:intron 35.0%
! AGTTTGCATGGTTTTTATGC+TGG + chr1_4:58936709-58936728 None:intergenic 35.0%
! TAGAGAAGTGCATAAAACTC+TGG + chr1_4:58936740-58936759 None:intergenic 35.0%
! ATTTTCACCATTTCCTATGC+TGG - chr1_4:58936900-58936919 Msa0173600:intron 35.0%
TTAGAAACTAGGACCATGTT+TGG + chr1_4:58937019-58937038 None:intergenic 35.0%
AAATGGAGTGCATCTTATCT+TGG - chr1_4:58937091-58937110 Msa0173600:intron 35.0%
TGGAAAGTCTGCTATTATTC+AGG - chr1_4:58937111-58937130 Msa0173600:CDS 35.0%
! TATTCAGGTTATTGACCAAG+TGG - chr1_4:58937126-58937145 Msa0173600:CDS 35.0%
! ATTCAGGTTATTGACCAAGT+GGG - chr1_4:58937127-58937146 Msa0173600:CDS 35.0%
ATCATAATCACAATCCCACT+TGG + chr1_4:58937144-58937163 None:intergenic 35.0%
CACATATTGAAAATTGGGGA+AGG + chr1_4:58937239-58937258 None:intergenic 35.0%
AAGAACCTTAAATCCGTAAG+GGG - chr1_4:58937511-58937530 Msa0173600:CDS 35.0%
!! TTTGGTGTCAATTCTCACTT+AGG - chr1_4:58937632-58937651 Msa0173600:five_prime_UTR 35.0%
!! TTGCCCACAATTGATAATGC+AGG + chr1_4:58934294-58934313 None:intergenic 40.0%
! TGAGGGTGTGAAATGAAAAG+GGG + chr1_4:58934482-58934501 None:intergenic 40.0%
! GTGAGGGTGTGAAATGAAAA+GGG + chr1_4:58934483-58934502 None:intergenic 40.0%
!! ATCATCATCGGTGTCGTTTA+AGG + chr1_4:58934575-58934594 None:intergenic 40.0%
AGTTGAAGATTCAGAGTCGT+TGG - chr1_4:58934627-58934646 Msa0173600:intron 40.0%
ATTCACGCAGAATTGAGTCT+AGG - chr1_4:58934698-58934717 Msa0173600:intron 40.0%
ACGCTTCACTTGATTCCATT+TGG - chr1_4:58934731-58934750 Msa0173600:intron 40.0%
! GAGCAAAATTGGGACCTTTT+TGG + chr1_4:58934822-58934841 None:intergenic 40.0%
TGCAAGAGTCGAGCAAAATT+GGG + chr1_4:58934832-58934851 None:intergenic 40.0%
!! CATGCTTGATTTGGCAAGTT+TGG - chr1_4:58935231-58935250 Msa0173600:intron 40.0%
!! GGTAACTTCTAGTTTGCTCA+GGG + chr1_4:58935409-58935428 None:intergenic 40.0%
!! TGGTAACTTCTAGTTTGCTC+AGG + chr1_4:58935410-58935429 None:intergenic 40.0%
TTAGATGCAGCCACTGTATT+AGG + chr1_4:58935464-58935483 None:intergenic 40.0%
! AGCATTTAAAACCGGTCCAA+CGG + chr1_4:58935734-58935753 None:intergenic 40.0%
! ATGTGAAGCATCCTACTTCA+TGG - chr1_4:58935961-58935980 Msa0173600:intron 40.0%
AGTTATGTATGCATCAGTCG+TGG - chr1_4:58936045-58936064 Msa0173600:intron 40.0%
GTTATGTATGCATCAGTCGT+GGG - chr1_4:58936046-58936065 Msa0173600:intron 40.0%
TCAGTACTCCCACAGTTTAA+AGG + chr1_4:58936097-58936116 None:intergenic 40.0%
TCTTGGTGAATGAAATGTCC+AGG - chr1_4:58936117-58936136 Msa0173600:intron 40.0%
CATCATAGCATAGCCAAGTA+TGG - chr1_4:58936268-58936287 Msa0173600:intron 40.0%
! CCGTGCCATTGAATTTCTAA+AGG + chr1_4:58936359-58936378 None:intergenic 40.0%
!!! GGATTCTAGCTAGCGTTTTT+TGG - chr1_4:58937057-58937076 Msa0173600:intron 40.0%
AGATGCACTCCATTTGTAGT+TGG + chr1_4:58937086-58937105 None:intergenic 40.0%
ACTCGTTGAATACTCCTACA+TGG + chr1_4:58937307-58937326 None:intergenic 40.0%
GCTAACTTCCTAGACAATGA+TGG - chr1_4:58937345-58937364 Msa0173600:CDS 40.0%
CTGCAAAACCATCATTGTCT+AGG + chr1_4:58937356-58937375 None:intergenic 40.0%
GTCGTGTTAATTTCACGAAC+CGG + chr1_4:58937409-58937428 None:intergenic 40.0%
TTGATGTTAAGCCGAAGATG+TGG - chr1_4:58937443-58937462 Msa0173600:CDS 40.0%
!! GATATTTTAGGGGCGCAATA+TGG + chr1_4:58937675-58937694 None:intergenic 40.0%
AGGAAAGTTTGCGTGGAAAC+TGG + chr1_4:58934406-58934425 None:intergenic 45.0%
AGAGAAGAGAAGGGTGGAAA+TGG + chr1_4:58934455-58934474 None:intergenic 45.0%
AGGGTGTGAAATGAAAAGGG+GGG + chr1_4:58934480-58934499 None:intergenic 45.0%
! GAGGGTGTGAAATGAAAAGG+GGG + chr1_4:58934481-58934500 None:intergenic 45.0%
! GGTGAGGGTGTGAAATGAAA+AGG + chr1_4:58934484-58934503 None:intergenic 45.0%
! AACGAACATGACTTGGGTGA+GGG + chr1_4:58934499-58934518 None:intergenic 45.0%
! TAACGAACATGACTTGGGTG+AGG + chr1_4:58934500-58934519 None:intergenic 45.0%
! TTGGAAGCGCGATACAAAGA+AGG + chr1_4:58934538-58934557 None:intergenic 45.0%
! TAAGGTGGTTGGGTTGTGTT+TGG + chr1_4:58934557-58934576 None:intergenic 45.0%
!! ATCATCGGTGTCGTTTAAGG+TGG + chr1_4:58934572-58934591 None:intergenic 45.0%
AACGACACCGATGATGATTC+TGG - chr1_4:58934577-58934596 Msa0173600:intron 45.0%
ACGACACCGATGATGATTCT+GGG - chr1_4:58934578-58934597 Msa0173600:intron 45.0%
! TGGGACTTTATTGGTGACAG+AGG - chr1_4:58934597-58934616 Msa0173600:intron 45.0%
! TCAGAGTCGTTGGTTGAAGA+TGG - chr1_4:58934637-58934656 Msa0173600:intron 45.0%
! CAGAGTCGTTGGTTGAAGAT+GGG - chr1_4:58934638-58934657 Msa0173600:intron 45.0%
! AGAGTCGTTGGTTGAAGATG+GGG - chr1_4:58934639-58934658 Msa0173600:intron 45.0%
! AGGTTGGCTGATTTCATTCC+TGG - chr1_4:58934775-58934794 Msa0173600:intron 45.0%
AATTTACTGAGGGCAAGACC+AGG + chr1_4:58934796-58934815 None:intergenic 45.0%
CTGCAAGAGTCGAGCAAAAT+TGG + chr1_4:58934833-58934852 None:intergenic 45.0%
! CAATTTTGCTCGACTCTTGC+AGG - chr1_4:58934831-58934850 Msa0173600:intron 45.0%
TAAACGAAGTGGCAAGCACA+AGG + chr1_4:58935078-58935097 None:intergenic 45.0%
TCACGAGGAACTGTGCTATA+AGG - chr1_4:58935192-58935211 Msa0173600:intron 45.0%
! AATGACCTTGTTGGTGGATG+AGG + chr1_4:58935375-58935394 None:intergenic 45.0%
TAGGGACCTTCCTAATACAG+TGG - chr1_4:58935451-58935470 Msa0173600:intron 45.0%
ATGCAGCCACTGTATTAGGA+AGG + chr1_4:58935460-58935479 None:intergenic 45.0%
ATCAAATACGGTCAGTCCGT+TGG - chr1_4:58935715-58935734 Msa0173600:intron 45.0%
ACTCTAGTATGAGGTGGTTG+TGG + chr1_4:58935829-58935848 None:intergenic 45.0%
!! AACTGTGGGAGTACTGATCT+TGG - chr1_4:58936100-58936119 Msa0173600:intron 45.0%
TCCAGGCAATACACATCAGT+TGG - chr1_4:58936134-58936153 Msa0173600:intron 45.0%
ACCAACTGATGTGTATTGCC+TGG + chr1_4:58936138-58936157 None:intergenic 45.0%
CCTTGCAGCAAAACCATACT+TGG + chr1_4:58936284-58936303 None:intergenic 45.0%
!! CCAAGTATGGTTTTGCTGCA+AGG - chr1_4:58936281-58936300 Msa0173600:intron 45.0%
ACAGATTGGAGAGCAGAACT+TGG - chr1_4:58936490-58936509 Msa0173600:intron 45.0%
GAGAGCAGAACTTGGCATTT+GGG - chr1_4:58936498-58936517 Msa0173600:intron 45.0%
GAATTGGAGACTCTTCCATC+TGG - chr1_4:58936563-58936582 Msa0173600:intron 45.0%
ATGTCACGCTTCATACCAGA+TGG + chr1_4:58936581-58936600 None:intergenic 45.0%
! GGGGATTTTCAGCTCTTTGA+AGG - chr1_4:58936620-58936639 Msa0173600:intron 45.0%
! ACCATTTCCTATGCTGGTCT+TGG - chr1_4:58936906-58936925 Msa0173600:intron 45.0%
TCCAAGACCAGCATAGGAAA+TGG + chr1_4:58936910-58936929 None:intergenic 45.0%
! GTGTTTTCCAAGACCAGCAT+AGG + chr1_4:58936916-58936935 None:intergenic 45.0%
! GTTTTGCAGACTTTCAGCGA+TGG - chr1_4:58937367-58937386 Msa0173600:CDS 45.0%
TTTCAGCGATGGAAGTTGTG+AGG - chr1_4:58937378-58937397 Msa0173600:CDS 45.0%
CTTCACCCCTTACGGATTTA+AGG + chr1_4:58937519-58937538 None:intergenic 45.0%
TTTCAGAGCTTCACCCCTTA+CGG + chr1_4:58937527-58937546 None:intergenic 45.0%
CTTAGGTAAAGCTGCAAGCT+TGG - chr1_4:58937649-58937668 Msa0173600:five_prime_UTR 45.0%
AGGGAGTAGGAAAGTTTGCG+TGG + chr1_4:58934413-58934432 None:intergenic 50.0%
AGAAGGGTGGAAATGGAAGC+CGG + chr1_4:58934448-58934467 None:intergenic 50.0%
!! CGGTGTCGTTTAAGGTGGTT+GGG + chr1_4:58934567-58934586 None:intergenic 50.0%
!! TCGGTGTCGTTTAAGGTGGT+TGG + chr1_4:58934568-58934587 None:intergenic 50.0%
TTCCTCCTCATCCACCAACA+AGG - chr1_4:58935367-58935386 Msa0173600:CDS 50.0%
GGCGTCTATTAGGGTAATGC+AGG + chr1_4:58935766-58935785 None:intergenic 50.0%
GTGGTTGTGGGCGTCTATTA+GGG + chr1_4:58935775-58935794 None:intergenic 50.0%
AGTGGTTGTGGGCGTCTATT+AGG + chr1_4:58935776-58935795 None:intergenic 50.0%
TAATAGACGCCCACAACCAC+TGG - chr1_4:58935775-58935794 Msa0173600:intron 50.0%
CTAGTATGAGGTGGTTGTGG+TGG + chr1_4:58935826-58935845 None:intergenic 50.0%
AAAGCATAGGCGTCCATGAG+TGG - chr1_4:58935923-58935942 Msa0173600:intron 50.0%
ATGTATGCATCAGTCGTGGG+TGG - chr1_4:58936049-58936068 Msa0173600:intron 50.0%
GGAGAGCAGAACTTGGCATT+TGG - chr1_4:58936497-58936516 Msa0173600:intron 50.0%
TGGAAGTTGTGAGGACTCTC+CGG - chr1_4:58937387-58937406 Msa0173600:CDS 50.0%
TCTACCCTCTATCAGCCCAA+CGG + chr1_4:58937473-58937492 None:intergenic 50.0%
!! GTGGTGATGGTTGAGGGAGT+AGG + chr1_4:58934426-58934445 None:intergenic 55.0%
ACTCCCTCAACCATCACCAC+CGG - chr1_4:58934426-58934445 Msa0173600:CDS 55.0%
!! AAGCCGGTGGTGATGGTTGA+GGG + chr1_4:58934432-58934451 None:intergenic 55.0%
GAAATGGAAGCCGGTGGTGA+TGG + chr1_4:58934439-58934458 None:intergenic 55.0%
AGGGGGGTGAGAGAAGAGAA+GGG + chr1_4:58934464-58934483 None:intergenic 55.0%
AAGGGGGGTGAGAGAAGAGA+AGG + chr1_4:58934465-58934484 None:intergenic 55.0%
! GACCTTGTTGGTGGATGAGG+AGG + chr1_4:58935372-58935391 None:intergenic 55.0%
ATACGGTCAGTCCGTTGGAC+CGG - chr1_4:58935720-58935739 Msa0173600:intron 55.0%
TATGCATCAGTCGTGGGTGG+TGG - chr1_4:58936052-58936071 Msa0173600:intron 55.0%
! CTGGTTTGCGCGAGTTTGCA+TGG + chr1_4:58936721-58936740 None:intergenic 55.0%
CCAACGGGCAACCACATCTT+CGG + chr1_4:58937457-58937476 None:intergenic 55.0%
CGAAGATGTGGTTGCCCGTT+GGG - chr1_4:58937455-58937474 Msa0173600:CDS 55.0%
TTGCCCGTTGGGCTGATAGA+GGG - chr1_4:58937466-58937485 Msa0173600:CDS 55.0%
CTACCCTCTATCAGCCCAAC+GGG + chr1_4:58937472-58937491 None:intergenic 55.0%
!! GAAGCCGGTGGTGATGGTTG+AGG + chr1_4:58934433-58934452 None:intergenic 60.0%
AGGGTGGAAATGGAAGCCGG+TGG + chr1_4:58934445-58934464 None:intergenic 60.0%
GGGGTGAGAGAAGAGAAGGG+TGG + chr1_4:58934461-58934480 None:intergenic 60.0%
GACACAACACGGCTCTCACG+AGG - chr1_4:58935177-58935196 Msa0173600:intron 60.0%
GTGGCTACGCCAGTGGTTGT+GGG + chr1_4:58935787-58935806 None:intergenic 60.0%
TGTTGTGGTGGCTACGCCAG+TGG + chr1_4:58935794-58935813 None:intergenic 60.0%
TGGCGTAGCCACCACAACAC+TGG - chr1_4:58935795-58935814 Msa0173600:intron 60.0%
TGGCTACGCCAGTGTTGTGG+TGG + chr1_4:58935806-58935825 None:intergenic 60.0%
TGGTGGCTACGCCAGTGTTG+TGG + chr1_4:58935809-58935828 None:intergenic 60.0%
CCGAAGATGTGGTTGCCCGT+TGG - chr1_4:58937454-58937473 Msa0173600:CDS 60.0%
GTTGCCCGTTGGGCTGATAG+AGG - chr1_4:58937465-58937484 Msa0173600:CDS 60.0%
GGTGGCTACGCCAGTGGTTG+TGG + chr1_4:58935788-58935807 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr1_4 gene 58934244 58937713 58934244 ID=Msa0173600;Name=Msa0173600
chr1_4 mRNA 58934244 58937713 58934244 ID=Msa0173600-mRNA-1;Parent=Msa0173600;Name=Msa0173600-mRNA-1;_AED=0.01;_eAED=0.01;_QI=147|1|1|1|0.5|1|3|128|279
chr1_4 exon 58934244 58934581 58934244 ID=Msa0173600-mRNA-1:exon:18393;Parent=Msa0173600-mRNA-1
chr1_4 exon 58935296 58935463 58935296 ID=Msa0173600-mRNA-1:exon:18392;Parent=Msa0173600-mRNA-1
chr1_4 exon 58937105 58937713 58937105 ID=Msa0173600-mRNA-1:exon:18391;Parent=Msa0173600-mRNA-1
chr1_4 five_prime_UTR 58937567 58937713 58937567 ID=Msa0173600-mRNA-1:five_prime_utr;Parent=Msa0173600-mRNA-1
chr1_4 CDS 58937105 58937566 58937105 ID=Msa0173600-mRNA-1:cds;Parent=Msa0173600-mRNA-1
chr1_4 CDS 58935296 58935463 58935296 ID=Msa0173600-mRNA-1:cds;Parent=Msa0173600-mRNA-1
chr1_4 CDS 58934372 58934581 58934372 ID=Msa0173600-mRNA-1:cds;Parent=Msa0173600-mRNA-1
chr1_4 three_prime_UTR 58934244 58934371 58934244 ID=Msa0173600-mRNA-1:three_prime_utr;Parent=Msa0173600-mRNA-1
Gene Sequence

>Msa0173600

ATGCGCGCGATTCCAGTTTCCACGCAAACTTTCCTACTCCCTCAACCATCACCACCGGCTTCCATTTCCACCCTTCTCTTCTCTCACCCCCCTTTTCATTTCACACCCTCACCCAAGTCATGTTCGTTAAACATCAACTTTACTCCTTCTTTGTATCGCGCTTCCAAACACAACCCAACCACCTTAAACGACACCGATGATGATTCTGGGACTTTATTGGTGACAGAGGATGATGAAGTTGAAGATTCAGAGTCGTTGGTTGAAGATGGGGTGTACATAGAAGTCACGAAGCTTGAGAATGAGAAGAATTCACGCAGAATTGAGTCTAGGATTTCTATCGACGCTTCACTTGATTCCATTTGGAATATCTTGACTGATTATGAAAGGTTGGCTGATTTCATTCCTGGTCTTGCCCTCAGTAAATTGATCCAAAAAGGTCCCAATTTTGCTCGACTCTTGCAGATTGGAGAGCAGAACTTGGCATTTGGGTTAAAATTTGATGCTAAAGGAGTTATAGATTGTTTTGAGAAAGAATTGGAGACTCTTCCATCTGGTATGAAGCGTGACATAGACTTCAAGATGATTGAAGGGGATTTTCAGCTCTTTGAAGGAAAATGGTCTATTTTGCAGACTTTCAGCGATGGAAGTTGTGAGGACTCTCCGGTTCGTGAAATTAACACGACACTTTCATACATTGTTGATGTTAAGCCGAAGATGTGGTTGCCCGTTGGGCTGATAGAGGGTAGACTTTGCAAAGAGATAAAAAAGAACCTTAAATCCGTAAGGGGTGAAGCTCTGAAAGCTACTGACAGAACTGTTAATGCAAATCAATTTGAATGA

Protein sequence

>Msa0173600

MRAIPVSTQTFLLPQPSPPASISTLLFSHPPFHFTPSPKSCSLNINFTPSLYRASKHNPTTLNDTDDDSGTLLVTEDDEVEDSESLVEDGVYIEVTKLENEKNSRRIESRISIDASLDSIWNILTDYERLADFIPGLALSKLIQKGPNFARLLQIGEQNLAFGLKFDAKGVIDCFEKELETLPSGMKRDIDFKMIEGDFQLFEGKWSILQTFSDGSCEDSPVREINTTLSYIVDVKPKMWLPVGLIEGRLCKEIKKNLKSVRGEALKATDRTVNANQFE*