Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0563800 | KEH20620.1 | 98.058 | 206 | 4 | 0 | 1 | 206 | 320 | 525 | 2.00e-142 | 417 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0563800 | sp|A0A1P8B760|AMI4G_ARATH | 58.730 | 189 | 74 | 3 | 5 | 189 | 320 | 508 | 9.12e-66 | 213 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0563800 | A0A072U452 | 98.058 | 206 | 4 | 0 | 1 | 206 | 320 | 525 | 9.54e-143 | 417 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0003890 | Msa0563800 | 0.802448 | 5.584816e-49 | -8.615850e-47 |
| Msa0036140 | Msa0563800 | 0.805273 | 1.445539e-49 | -8.615850e-47 |
| Msa0084380 | Msa0563800 | 0.801520 | 8.663812e-49 | -8.615850e-47 |
| Msa0086760 | Msa0563800 | 0.806808 | 6.871611e-50 | -8.615850e-47 |
| Msa0114060 | Msa0563800 | 0.814203 | 1.736404e-51 | -8.615850e-47 |
| Msa0153910 | Msa0563800 | 0.807679 | 4.491946e-50 | -8.615850e-47 |
| Msa0188830 | Msa0563800 | 0.802731 | 4.881287e-49 | -8.615850e-47 |
| Msa0220580 | Msa0563800 | 0.802242 | 6.156175e-49 | -8.615850e-47 |
| Msa0376350 | Msa0563800 | 0.801431 | 9.032796e-49 | -8.615850e-47 |
| Msa0424790 | Msa0563800 | 0.806561 | 7.749844e-50 | -8.615850e-47 |
| Msa0481530 | Msa0563800 | 0.805977 | 1.028878e-49 | -8.615850e-47 |
| Msa0260680 | Msa0563800 | 0.805193 | 1.502401e-49 | -8.615850e-47 |
| Msa0280090 | Msa0563800 | 0.804360 | 2.242397e-49 | -8.615850e-47 |
| Msa0309770 | Msa0563800 | 0.800308 | 1.531852e-48 | -8.615850e-47 |
| Msa0487800 | Msa0563800 | 0.808826 | 2.559029e-50 | -8.615850e-47 |
| Msa0516170 | Msa0563800 | 0.808905 | 2.461209e-50 | -8.615850e-47 |
| Msa0529890 | Msa0563800 | 0.813088 | 3.055310e-51 | -8.615850e-47 |
| Msa0563800 | Msa0563820 | 0.873166 | 1.815446e-67 | -8.615850e-47 |
| Msa0563800 | Msa0563840 | 0.800908 | 1.155861e-48 | -8.615850e-47 |
| Msa0563800 | Msa0577500 | 0.813111 | 3.019649e-51 | -8.615850e-47 |
| Msa0563800 | Msa0585560 | 0.804830 | 1.789553e-49 | -8.615850e-47 |
| Msa0563800 | Msa0610430 | 0.816956 | 4.233144e-52 | -8.615850e-47 |
| Msa0563800 | Msa0625720 | 0.810943 | 8.962032e-51 | -8.615850e-47 |
| Msa0563800 | Msa0661650 | 0.806877 | 6.643522e-50 | -8.615850e-47 |
| Msa0563800 | Msa0663390 | 0.811616 | 6.404618e-51 | -8.615850e-47 |
| Msa0563800 | Msa0692830 | 0.804089 | 2.553974e-49 | -8.615850e-47 |
| Msa0563800 | Msa0692950 | 0.811335 | 7.371079e-51 | -8.615850e-47 |
| Msa0563800 | Msa0724210 | 0.813281 | 2.771684e-51 | -8.615850e-47 |
| Msa0563800 | Msa0735170 | 0.816159 | 6.383674e-52 | -8.615850e-47 |
| Msa0563800 | Msa0762970 | 0.803836 | 2.882443e-49 | -8.615850e-47 |
| Msa0563800 | Msa0766630 | 0.808814 | 2.574052e-50 | -8.615850e-47 |
| Msa0563800 | Msa0885280 | 0.801219 | 9.983375e-49 | -8.615850e-47 |
| Msa0563800 | Msa0938220 | 0.811372 | 7.236073e-51 | -8.615850e-47 |
| Msa0563800 | Msa0947660 | 0.811672 | 6.227632e-51 | -8.615850e-47 |
| Msa0563800 | Msa0969520 | 0.818897 | 1.541872e-52 | -8.615850e-47 |
| Msa0563800 | Msa0974070 | 0.820018 | 8.561043e-53 | -8.615850e-47 |
| Msa0563800 | Msa1014540 | 0.824879 | 6.353327e-54 | -8.615850e-47 |
| Msa0563800 | Msa1035480 | 0.813399 | 2.610613e-51 | -8.615850e-47 |
| Msa0563800 | Msa1075540 | 0.807001 | 6.255594e-50 | -8.615850e-47 |
| Msa0563800 | Msa1082500 | 0.804879 | 1.748026e-49 | -8.615850e-47 |
| Msa0563800 | Msa1113170 | 0.802293 | 6.008729e-49 | -8.615850e-47 |
| Msa0563800 | Msa1188370 | 0.802023 | 6.828395e-49 | -8.615850e-47 |
| Msa0563800 | Msa1228590 | 0.809222 | 2.105011e-50 | -8.615850e-47 |
| Msa0563800 | Msa1250890 | 0.807951 | 3.933661e-50 | -8.615850e-47 |
| Msa0563800 | Msa1256250 | 0.804730 | 1.877440e-49 | -8.615850e-47 |
| Msa0563800 | Msa1284680 | 0.804261 | 2.351877e-49 | -8.615850e-47 |
| Msa0563800 | Msa1306840 | 0.812873 | 3.405043e-51 | -8.615850e-47 |
| Msa0563800 | Msa1327680 | 0.806014 | 1.010192e-49 | -8.615850e-47 |
| Msa0563800 | Msa1359040 | 0.803306 | 3.712561e-49 | -8.615850e-47 |
| Msa0563800 | Msa1427230 | 0.802123 | 6.514807e-49 | -8.615850e-47 |
| Msa0563800 | Msa1460830 | 0.802537 | 5.352983e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0563800 | MtrunA17_Chr8g0377651 | 98.058 | 206 | 4 | 0 | 1 | 206 | 320 | 525 | 1.84e-146 | 417 |
| Msa0563800 | MtrunA17_Chr8g0377641 | 89.447 | 199 | 20 | 1 | 1 | 198 | 317 | 515 | 2.98e-127 | 368 |
| Msa0563800 | MtrunA17_Chr8g0377701 | 84.021 | 194 | 31 | 0 | 1 | 194 | 321 | 514 | 5.51e-117 | 342 |
| Msa0563800 | MtrunA17_Chr8g0377681 | 82.653 | 196 | 33 | 1 | 2 | 196 | 318 | 513 | 1.43e-114 | 336 |
| Msa0563800 | MtrunA17_Chr8g0377691 | 81.122 | 196 | 37 | 0 | 1 | 196 | 320 | 515 | 2.21e-112 | 330 |
| Msa0563800 | MtrunA17_Chr4g0037521 | 57.672 | 189 | 76 | 3 | 5 | 189 | 319 | 507 | 1.31e-65 | 210 |
| Msa0563800 | MtrunA17_Chr4g0037491 | 54.696 | 181 | 76 | 4 | 5 | 180 | 122 | 301 | 1.97e-61 | 193 |
| Msa0563800 | MtrunA17_Chr8g0377661 | 88.750 | 80 | 9 | 0 | 119 | 198 | 1 | 80 | 7.21e-46 | 146 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0563800 | AT4G34880.1 | 58.730 | 189 | 74 | 3 | 5 | 189 | 274 | 462 | 3.16e-67 | 213 |
| Msa0563800 | AT4G34880.2 | 58.730 | 189 | 74 | 3 | 5 | 189 | 320 | 508 | 9.27e-67 | 213 |
Find 133 sgRNAs with CRISPR-Local
Find 271 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ACACATATACCGACCAATTT+TGG | 0.122914 | 4_1:+64263906 | None:intergenic |
| TTGAAATTTGATTAAGAAAA+TGG | 0.125513 | 4_1:+64267112 | None:intergenic |
| ATTGGATCCCAAGGTTTATT+TGG | 0.167555 | 4_1:+64267155 | None:intergenic |
| TGAGACCAACTGTTGGTTTA+AGG | 0.180487 | 4_1:+64265697 | None:intergenic |
| GTTGCATGGAATACCTATTT+TGG | 0.183488 | 4_1:-64266883 | Msa0563800:five_prime_UTR |
| GGTGAACTTCTCAACATTAA+TGG | 0.195696 | 4_1:+64263288 | None:intergenic |
| GCATTAATCTTGAGCATTAA+TGG | 0.202529 | 4_1:-64263406 | Msa0563800:three_prime_UTR |
| GAGCCATTTGGAATTTGTTT+TGG | 0.235593 | 4_1:-64263562 | Msa0563800:CDS |
| GTGAAGCTACTAAATCTTTC+AGG | 0.241049 | 4_1:+64263973 | None:intergenic |
| ATGTCAAGATGGTCAGAAAA+TGG | 0.249306 | 4_1:-64263709 | Msa0563800:CDS |
| GCTGAAAAGACGAACGGTTT+TGG | 0.251634 | 4_1:-64263760 | Msa0563800:CDS |
| TATAAAATTGTAGGAGAAAA+TGG | 0.263811 | 4_1:-64263809 | Msa0563800:intron |
| ATATGGTCTAAGTTTGATTA+AGG | 0.290846 | 4_1:+64267085 | None:intergenic |
| AAAGCTGGTGCTATCATATT+AGG | 0.306724 | 4_1:-64266753 | Msa0563800:five_prime_UTR |
| TGAGTGAGTGGTCACATTAC+AGG | 0.307159 | 4_1:-64266719 | Msa0563800:five_prime_UTR |
| AATTGAGCATAGCCACCTTT+TGG | 0.307622 | 4_1:+64265343 | None:intergenic |
| TCTGCTTGTGCTAATGCATC+TGG | 0.313056 | 4_1:+64266954 | None:intergenic |
| CAGGCAAAGAGGTGCAGTTT+TGG | 0.328515 | 4_1:-64264093 | Msa0563800:CDS |
| TGTGTTGAAGCCATCTTATT+TGG | 0.331353 | 4_1:+64263267 | None:intergenic |
| ATACAAAACCCAGTTCTAAA+AGG | 0.340481 | 4_1:-64266993 | Msa0563800:five_prime_UTR |
| AAGGCCTGAAGGGCATAAAA+TGG | 0.343475 | 4_1:+64265734 | None:intergenic |
| GTGAACTTCTCAACATTAAT+GGG | 0.348269 | 4_1:+64263289 | None:intergenic |
| AAGAAAATACAATGGGATAT+TGG | 0.352820 | 4_1:+64267137 | None:intergenic |
| AAACACCAAGTTCTCTTTCA+AGG | 0.367223 | 4_1:-64266905 | Msa0563800:five_prime_UTR |
| GTGTTATCCTTAACCAAAAT+AGG | 0.372541 | 4_1:+64266870 | None:intergenic |
| CAATGAGAAACACCCAAAAT+TGG | 0.384496 | 4_1:-64263919 | Msa0563800:intron |
| GTGAGAGACTACTACGAGTT+TGG | 0.385190 | 4_1:-64265280 | Msa0563800:five_prime_UTR |
| GATTAGTGAATTGCAAAATA+TGG | 0.387078 | 4_1:+64267068 | None:intergenic |
| TTTAGCCACATACTGGCTAT+TGG | 0.398364 | 4_1:-64263628 | Msa0563800:CDS |
| CTGGCTATTGGAGGTTATCC+TGG | 0.400039 | 4_1:-64263616 | Msa0563800:CDS |
| TATGAAAAGGGTGAGCCATT+TGG | 0.400795 | 4_1:-64263574 | Msa0563800:CDS |
| AATATCAGTAGCAGCAAATC+TGG | 0.401868 | 4_1:-64265790 | Msa0563800:five_prime_UTR |
| AGATTAGGAAATAGTGAGGT+TGG | 0.408085 | 4_1:+64267046 | None:intergenic |
| TAAGGATAACACTGCAACTA+AGG | 0.409299 | 4_1:-64266859 | Msa0563800:five_prime_UTR |
| TTGTAATTTCCAACTTCCTA+AGG | 0.412883 | 4_1:+64263458 | None:intergenic |
| CCCAGTTCTAAAAGGCATCT+TGG | 0.413564 | 4_1:-64266985 | Msa0563800:five_prime_UTR |
| TTGTAGGAGAAAATGGAGTA+TGG | 0.417039 | 4_1:-64263802 | Msa0563800:intron |
| TAAGCAATTTCAATCAACTT+TGG | 0.417086 | 4_1:+64263520 | None:intergenic |
| AGCACCAGCTTTCCTTAACT+TGG | 0.417639 | 4_1:+64266764 | None:intergenic |
| AGCTTCACCGGTGAACAGTT+TGG | 0.420459 | 4_1:-64263958 | Msa0563800:CDS |
| CAGCTTGCACCAATACATCT+TGG | 0.421918 | 4_1:+64263779 | None:intergenic |
| GTTGGAAATTACAAATAAGA+TGG | 0.439425 | 4_1:-64263449 | Msa0563800:CDS |
| ATGTGGCTAAAGGACCAAAA+AGG | 0.440108 | 4_1:+64263640 | None:intergenic |
| TACAGGTCTAGTAAAGTTCC+TGG | 0.443202 | 4_1:-64266702 | Msa0563800:five_prime_UTR |
| TGGCTTCAACACAAATAAGT+TGG | 0.444416 | 4_1:-64263386 | Msa0563800:three_prime_UTR |
| CAAGGATCATCCAATGTGTA+TGG | 0.446045 | 4_1:+64265834 | None:intergenic |
| TTGGTCCTTTAGCCACATAC+TGG | 0.448388 | 4_1:-64263635 | Msa0563800:CDS |
| GCCACCTCCCCTTAGGAAGT+TGG | 0.450869 | 4_1:-64263467 | Msa0563800:CDS |
| GAATTTGCTTGCTCAAATAG+TGG | 0.452117 | 4_1:-64263344 | Msa0563800:three_prime_UTR |
| TAAGGCCCACCACTGAGTTA+AGG | 0.459410 | 4_1:+64265715 | None:intergenic |
| AATAGTGGCTTTCTAATAAG+AGG | 0.460688 | 4_1:-64263329 | Msa0563800:three_prime_UTR |
| GAGAAGTTCACCAAATAAGA+TGG | 0.461855 | 4_1:-64263277 | Msa0563800:three_prime_UTR |
| AAGTTGGAAATTGCTTATCC+TGG | 0.462270 | 4_1:-64263370 | Msa0563800:three_prime_UTR |
| TTCAGGCCTTAACTCAGTGG+TGG | 0.475317 | 4_1:-64265721 | Msa0563800:five_prime_UTR |
| GGACTAAGAGGAAAGAGATT+AGG | 0.477099 | 4_1:-64265307 | Msa0563800:five_prime_UTR |
| TGTCAAGATGGTCAGAAAAT+GGG | 0.483186 | 4_1:-64263708 | Msa0563800:CDS |
| TGCAACCTTGAAAGAGAACT+TGG | 0.486425 | 4_1:+64266900 | None:intergenic |
| TCCAACTTCCTAAGGGGAGG+TGG | 0.486904 | 4_1:+64263466 | None:intergenic |
| CTAGTAAAGTTCCTGGTGGT+TGG | 0.493749 | 4_1:-64266695 | Msa0563800:five_prime_UTR |
| TGTAATTTCCAACTTCCTAA+GGG | 0.496080 | 4_1:+64263459 | None:intergenic |
| GGCCTCAAGGGCATGAGATT+AGG | 0.497022 | 4_1:+64267031 | None:intergenic |
| TCAGAAAGCCACCTCCCCTT+AGG | 0.498866 | 4_1:-64263474 | Msa0563800:CDS |
| CTCACTACTCTACTCAAAGT+TGG | 0.500986 | 4_1:-64263135 | Msa0563800:three_prime_UTR |
| TGTTCCAGCAGGATATGAAA+AGG | 0.501251 | 4_1:-64263587 | Msa0563800:CDS |
| AATGGAAAAGAAAATACAAT+GGG | 0.501386 | 4_1:+64267130 | None:intergenic |
| CCTCCAAAACAAATTCCAAA+TGG | 0.513160 | 4_1:+64263559 | None:intergenic |
| TGATTTGGTTGAGGCCTCAA+GGG | 0.514853 | 4_1:+64267019 | None:intergenic |
| CAGGTGTGGTTACCAAGTTA+AGG | 0.515753 | 4_1:-64266776 | Msa0563800:five_prime_UTR |
| CTAAAGAAAGACGGACTAAG+AGG | 0.516133 | 4_1:-64265319 | Msa0563800:five_prime_UTR |
| GTAACCACACCTGCATCTCT+TGG | 0.516366 | 4_1:+64266786 | None:intergenic |
| TCAGTCGTGCCAAGAGATGC+AGG | 0.516688 | 4_1:-64266795 | Msa0563800:five_prime_UTR |
| GCATCAAAGTATATCCCAAA+AGG | 0.517964 | 4_1:-64265358 | Msa0563800:five_prime_UTR |
| AAAAGTGTCGATGCCTGCTA+TGG | 0.521373 | 4_1:+64265399 | None:intergenic |
| TTGATTTGGTTGAGGCCTCA+AGG | 0.522621 | 4_1:+64267018 | None:intergenic |
| GGAGTATGGCCAAGATGTAT+TGG | 0.522951 | 4_1:-64263788 | Msa0563800:CDS |
| AGTTCTCTTTCAAGGTTGCA+TGG | 0.523607 | 4_1:-64266897 | Msa0563800:five_prime_UTR |
| AGCCACATACTGGCTATTGG+AGG | 0.525826 | 4_1:-64263625 | Msa0563800:CDS |
| AATAGCCAGTATGTGGCTAA+AGG | 0.528869 | 4_1:+64263630 | None:intergenic |
| TGAGCAAGCAAATTCACTCC+AGG | 0.535659 | 4_1:+64263352 | None:intergenic |
| CAATGGGATATTGGATCCCA+AGG | 0.537550 | 4_1:+64267146 | None:intergenic |
| GTTACCAAGTTAAGGAAAGC+TGG | 0.537797 | 4_1:-64266768 | Msa0563800:five_prime_UTR |
| TAGAAATAACAAATCTGTCA+AGG | 0.539464 | 4_1:+64263235 | None:intergenic |
| TTCCTAATCTCATGCCCTTG+AGG | 0.540395 | 4_1:-64267033 | Msa0563800:five_prime_UTR |
| CCACTGAGTTAAGGCCTGAA+GGG | 0.544901 | 4_1:+64265724 | None:intergenic |
| ATAAAGCTGACCAAGAAAGA+AGG | 0.545569 | 4_1:-64266932 | Msa0563800:five_prime_UTR |
| TTTATCTAAGTATAAGACCT+AGG | 0.549759 | 4_1:+64267224 | None:intergenic |
| GATAGATTGAACACTACTGC+TGG | 0.550587 | 4_1:-64266837 | Msa0563800:five_prime_UTR |
| GAAAGATTTAGTAGCTTCAC+CGG | 0.550684 | 4_1:-64263970 | Msa0563800:CDS |
| TTCAAAGCAATAGATTCACT+TGG | 0.552004 | 4_1:+64264026 | None:intergenic |
| GATCCTTGTGGTTCAAGTAG+TGG | 0.552399 | 4_1:-64265819 | Msa0563800:five_prime_UTR |
| TGTGTTCTTGAAACCATAGC+AGG | 0.553334 | 4_1:-64265412 | Msa0563800:five_prime_UTR |
| GTTGGTCTCACTAGTAGAGC+AGG | 0.557670 | 4_1:-64265684 | Msa0563800:intron |
| CATGAGATTAGGAAATAGTG+AGG | 0.562309 | 4_1:+64267042 | None:intergenic |
| TGCTAGAGGTGGACAAGGAA+AGG | 0.563245 | 4_1:-64266670 | Msa0563800:intron |
| TCAGGCCTTAACTCAGTGGT+GGG | 0.564541 | 4_1:-64265720 | Msa0563800:five_prime_UTR |
| GTTGAAATTATCAGGCAAAG+AGG | 0.565242 | 4_1:-64264104 | Msa0563800:intron |
| AGAAATAACAAATCTGTCAA+GGG | 0.566620 | 4_1:+64263236 | None:intergenic |
| ACCACTGAGTTAAGGCCTGA+AGG | 0.569080 | 4_1:+64265723 | None:intergenic |
| TAAAGCTGACCAAGAAAGAA+GGG | 0.569715 | 4_1:-64266931 | Msa0563800:five_prime_UTR |
| AAATGGAAAAGAAAATACAA+TGG | 0.582628 | 4_1:+64267129 | None:intergenic |
| GCTCAATTTCTAAAGAAAGA+CGG | 0.585283 | 4_1:-64265328 | Msa0563800:five_prime_UTR |
| CCCTTCAGGCCTTAACTCAG+TGG | 0.586720 | 4_1:-64265724 | Msa0563800:five_prime_UTR |
| AACCTCCAATAGCCAGTATG+TGG | 0.588183 | 4_1:+64263623 | None:intergenic |
| CCTGCTGGAACACTCACTCC+AGG | 0.588550 | 4_1:+64263598 | None:intergenic |
| CCTCTAGCATTCCAACCACC+AGG | 0.589318 | 4_1:+64266684 | None:intergenic |
| GTTCCAGCAGGATATGAAAA+GGG | 0.591011 | 4_1:-64263586 | Msa0563800:CDS |
| CATTATTGAATATGTCAAGA+TGG | 0.595401 | 4_1:-64263720 | Msa0563800:CDS |
| ACATCTGCCAAACTGTTCAC+CGG | 0.595656 | 4_1:+64263951 | None:intergenic |
| GAAAGGCCACTTTGAGTGAG+TGG | 0.597972 | 4_1:-64266731 | Msa0563800:five_prime_UTR |
| ATGTGACCACTCACTCAAAG+TGG | 0.600148 | 4_1:+64266725 | None:intergenic |
| TTGTGGTTCAAGTAGTGGAT+CGG | 0.605165 | 4_1:-64265814 | Msa0563800:five_prime_UTR |
| AGTGGCTTTCTAATAAGAGG+TGG | 0.607310 | 4_1:-64263326 | Msa0563800:three_prime_UTR |
| CCTGGAGTGAGTGTTCCAGC+AGG | 0.610841 | 4_1:-64263598 | Msa0563800:CDS |
| GTATGTTTAGATGAATGCCT+AGG | 0.611478 | 4_1:-64267241 | None:intergenic |
| TGGTGCTATCATATTAGGAA+AGG | 0.612275 | 4_1:-64266748 | Msa0563800:five_prime_UTR |
| AGTTCTAAAAGGCATCTTGG+AGG | 0.616330 | 4_1:-64266982 | Msa0563800:five_prime_UTR |
| ATTTCCAACTTCCTAAGGGG+AGG | 0.618968 | 4_1:+64263463 | None:intergenic |
| CGTGCCAAGAGATGCAGGTG+TGG | 0.627217 | 4_1:-64266790 | Msa0563800:five_prime_UTR |
| AGGGCATAAAATGGAGCCAT+CGG | 0.628207 | 4_1:+64265743 | None:intergenic |
| GTGCAAGCTGAAAAGACGAA+CGG | 0.628607 | 4_1:-64263766 | Msa0563800:CDS |
| GTAATTTCCAACTTCCTAAG+GGG | 0.629814 | 4_1:+64263460 | None:intergenic |
| TCAAAGTATATCCCAAAAGG+TGG | 0.630247 | 4_1:-64265355 | Msa0563800:five_prime_UTR |
| CTACTAGTGAGACCAACTGT+TGG | 0.631026 | 4_1:+64265690 | None:intergenic |
| CCTGGTGGTTGGAATGCTAG+AGG | 0.631226 | 4_1:-64266684 | Msa0563800:five_prime_UTR |
| GTGGGCCTTAAACCAACAGT+TGG | 0.632543 | 4_1:-64265702 | Msa0563800:five_prime_UTR |
| TGGAATGCTAGAGGTGGACA+AGG | 0.642036 | 4_1:-64266675 | Msa0563800:five_prime_UTR |
| TACACATTGGATGATCCTTG+TGG | 0.659008 | 4_1:-64265831 | Msa0563800:five_prime_UTR |
| TGTGCAGAATCCATACACAT+TGG | 0.673696 | 4_1:-64265844 | Msa0563800:intron |
| AATCTGGTTACTGTGTCACT+TGG | 0.676515 | 4_1:-64265774 | Msa0563800:five_prime_UTR |
| GGTGGTTGGAATGCTAGAGG+TGG | 0.689775 | 4_1:-64266681 | Msa0563800:five_prime_UTR |
| AGGTCTAGTAAAGTTCCTGG+TGG | 0.700262 | 4_1:-64266699 | Msa0563800:five_prime_UTR |
| TCACTTGGTACTGAAACCGA+TGG | 0.716676 | 4_1:-64265759 | Msa0563800:five_prime_UTR |
| GATCCACTACTTGAACCACA+AGG | 0.767744 | 4_1:+64265816 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTGAAATTTGATTAAGAAAA+TGG | + | chr4_1:64263213-64263232 | None:intergenic | 15.0% |
| !!! | TTTTAGGTATAATTGATTTT+GGG | - | chr4_1:64264123-64264142 | Msa0563800:intron | 15.0% |
| !!! | AGTAAATAATTTTTTTTTCG+AGG | - | chr4_1:64264362-64264381 | Msa0563800:intron | 15.0% |
| !! | AGTTTAATGTAAATGTAAAT+AGG | + | chr4_1:64265861-64265880 | None:intergenic | 15.0% |
| !! | TTCACATTTGTTTGAAAAAT+TGG | + | chr4_1:64263127-64263146 | None:intergenic | 20.0% |
| !! | AATGGAAAAGAAAATACAAT+GGG | + | chr4_1:64263195-64263214 | None:intergenic | 20.0% |
| !! | AAATGGAAAAGAAAATACAA+TGG | + | chr4_1:64263196-64263215 | None:intergenic | 20.0% |
| !! | TTATAGTTTACTACTTATTC+TGG | - | chr4_1:64263794-64263813 | Msa0563800:CDS | 20.0% |
| !! | TGATTTACAATTAGGTAAAT+TGG | + | chr4_1:64263854-64263873 | None:intergenic | 20.0% |
| !!! | TTCTTTGTTGATTTACAATT+AGG | + | chr4_1:64263862-64263881 | None:intergenic | 20.0% |
| !!! | CAAAACTGATTTTTTGAAAT+CGG | - | chr4_1:64263938-64263957 | Msa0563800:CDS | 20.0% |
| !!! | CTTTTAGGTATAATTGATTT+TGG | - | chr4_1:64264122-64264141 | Msa0563800:intron | 20.0% |
| !! | GACATAAAAAATGAGTAAAT+AGG | + | chr4_1:64264805-64264824 | None:intergenic | 20.0% |
| !! | TAGTAATTGTGTAACATTAA+TGG | - | chr4_1:64264841-64264860 | Msa0563800:intron | 20.0% |
| !!! | TCATTGTCTATTATTTTCTT+TGG | - | chr4_1:64265240-64265259 | Msa0563800:CDS | 20.0% |
| !! | TGTAGTATAAATATCACATT+TGG | - | chr4_1:64265658-64265677 | Msa0563800:intron | 20.0% |
| !! | AATTAAAACTGTCCAAAATT+TGG | - | chr4_1:64265758-64265777 | Msa0563800:five_prime_UTR | 20.0% |
| !! | ATTAAAACTGTCCAAAATTT+GGG | - | chr4_1:64265759-64265778 | Msa0563800:five_prime_UTR | 20.0% |
| !! | ACATTTACATTAAACTATGT+TGG | - | chr4_1:64265865-64265884 | Msa0563800:intron | 20.0% |
| !!! | TATAGTAGAAAGTATAAGAA+GGG | - | chr4_1:64265936-64265955 | Msa0563800:intron | 20.0% |
| !! | AACAATGTTATCAATTGATA+GGG | + | chr4_1:64266201-64266220 | None:intergenic | 20.0% |
| !! | ATAACATTGTTGAAATTATC+AGG | - | chr4_1:64266210-64266229 | Msa0563800:intron | 20.0% |
| !! | GAATTGTTGTATAAAATTGT+AGG | - | chr4_1:64266504-64266523 | Msa0563800:intron | 20.0% |
| !! | TATAAAATTGTAGGAGAAAA+TGG | - | chr4_1:64266513-64266532 | Msa0563800:intron | 20.0% |
| ! | TTTATCTAAGTATAAGACCT+AGG | + | chr4_1:64263101-64263120 | None:intergenic | 25.0% |
| ! | AAGAAAATACAATGGGATAT+TGG | + | chr4_1:64263188-64263207 | None:intergenic | 25.0% |
| ! | ATATGGTCTAAGTTTGATTA+AGG | + | chr4_1:64263240-64263259 | None:intergenic | 25.0% |
| ! | GATTAGTGAATTGCAAAATA+TGG | + | chr4_1:64263257-64263276 | None:intergenic | 25.0% |
| !!! | TTGTATTTTTGATTTGGTTG+AGG | + | chr4_1:64263315-64263334 | None:intergenic | 25.0% |
| !!! | TGGGTTTTGTATTTTTGATT+TGG | + | chr4_1:64263321-64263340 | None:intergenic | 25.0% |
| !! | CTACTTACTTAATTTGAGTT+TGG | - | chr4_1:64263685-64263704 | Msa0563800:CDS | 25.0% |
| !! | CAATTTTTGTCTGTATAGTT+TGG | - | chr4_1:64264026-64264045 | Msa0563800:CDS | 25.0% |
| ! | ATGTCAATAAGTTTGAGAAT+TGG | - | chr4_1:64264068-64264087 | Msa0563800:CDS | 25.0% |
| !!! | AAGCTAGAAATTTAGCTTTT+AGG | - | chr4_1:64264107-64264126 | Msa0563800:intron | 25.0% |
| ! | AACGTGATTTGACTATAAAT+TGG | + | chr4_1:64264184-64264203 | None:intergenic | 25.0% |
| !! | TGAGGCATTATTAGAAAAAT+AGG | - | chr4_1:64264328-64264347 | Msa0563800:intron | 25.0% |
| ! | GATAATCAAGTCATTTCTTT+AGG | + | chr4_1:64264388-64264407 | None:intergenic | 25.0% |
| ! | TAAAGTTCCAATAAGAAGAA+GGG | + | chr4_1:64264411-64264430 | None:intergenic | 25.0% |
| ! | ATGAATGATTCTTGAAAATG+AGG | - | chr4_1:64264433-64264452 | Msa0563800:intron | 25.0% |
| !! | TTACCATTTTGCAAATTCAA+TGG | - | chr4_1:64264739-64264758 | Msa0563800:intron | 25.0% |
| !! | GTAATTACCTTAACGTTTTT+AGG | + | chr4_1:64265104-64265123 | None:intergenic | 25.0% |
| ! | AATACTAATCTATGTGTATG+AGG | + | chr4_1:64265166-64265185 | None:intergenic | 25.0% |
| ! | TGATTTCTCCTATATAATTG+TGG | + | chr4_1:64265266-64265285 | None:intergenic | 25.0% |
| ! | TAATAATAAACAACTCCCAA+AGG | + | chr4_1:64265325-64265344 | None:intergenic | 25.0% |
| ! | TGGGAGTTGTTTATTATTAT+CGG | - | chr4_1:64265326-64265345 | Msa0563800:five_prime_UTR | 25.0% |
| ! | ATGCTAATAATAACATGTCT+TGG | - | chr4_1:64265432-64265451 | Msa0563800:intron | 25.0% |
| !!! | CATATTTTTTTGACAAACCA+CGG | - | chr4_1:64265579-64265598 | Msa0563800:intron | 25.0% |
| !!! | TCATGTGTTGATAACTTAAT+CGG | - | chr4_1:64265714-64265733 | Msa0563800:five_prime_UTR | 25.0% |
| ! | TTAAAACTGTCCAAAATTTG+GGG | - | chr4_1:64265760-64265779 | Msa0563800:five_prime_UTR | 25.0% |
| ! | GAATTTGAAGATTGATGTTA+AGG | - | chr4_1:64265887-64265906 | Msa0563800:intron | 25.0% |
| !! | GTATAGTAGAAAGTATAAGA+AGG | - | chr4_1:64265935-64265954 | Msa0563800:intron | 25.0% |
| ! | TTTAGTTAGTTAGAAATCAG+AGG | - | chr4_1:64266020-64266039 | Msa0563800:intron | 25.0% |
| ! | CAACAATGTTATCAATTGAT+AGG | + | chr4_1:64266202-64266221 | None:intergenic | 25.0% |
| ! | CATTATTGAATATGTCAAGA+TGG | - | chr4_1:64266602-64266621 | Msa0563800:intron | 25.0% |
| ! | TAAGCAATTTCAATCAACTT+TGG | + | chr4_1:64266805-64266824 | None:intergenic | 25.0% |
| ! | GTTGGAAATTACAAATAAGA+TGG | - | chr4_1:64266873-64266892 | Msa0563800:five_prime_UTR | 25.0% |
| ! | AGAAATAACAAATCTGTCAA+GGG | + | chr4_1:64267089-64267108 | None:intergenic | 25.0% |
| ! | TAGAAATAACAAATCTGTCA+AGG | + | chr4_1:64267090-64267109 | None:intergenic | 25.0% |
| ! | AAGCTTTTCCAAATAAACCT+TGG | - | chr4_1:64263159-64263178 | Msa0563800:three_prime_UTR | 30.0% |
| ! | AGCTTTTCCAAATAAACCTT+GGG | - | chr4_1:64263160-64263179 | Msa0563800:three_prime_UTR | 30.0% |
| !! | ATACAAAACCCAGTTCTAAA+AGG | - | chr4_1:64263329-64263348 | Msa0563800:three_prime_UTR | 30.0% |
| !!! | TGGAATACCTATTTTGGTTA+AGG | - | chr4_1:64263445-64263464 | Msa0563800:CDS | 30.0% |
| GTGTTATCCTTAACCAAAAT+AGG | + | chr4_1:64263455-64263474 | None:intergenic | 30.0% | |
| ! | AAAAAATCAGTTTTGCCGAA+CGG | + | chr4_1:64263933-64263952 | None:intergenic | 30.0% |
| !!! | AGCTAAATTTCTAGCTTTTG+CGG | + | chr4_1:64264104-64264123 | None:intergenic | 30.0% |
| TGACTATAAATTGGTGTGTT+TGG | + | chr4_1:64264175-64264194 | None:intergenic | 30.0% | |
| ! | ACAAATTTGGAATCAAACGT+AGG | - | chr4_1:64264233-64264252 | Msa0563800:intron | 30.0% |
| AAAGTTCCAATAAGAAGAAG+GGG | + | chr4_1:64264410-64264429 | None:intergenic | 30.0% | |
| CTAAAGTTCCAATAAGAAGA+AGG | + | chr4_1:64264412-64264431 | None:intergenic | 30.0% | |
| ATTTGCAAAATGGTAACAGT+GGG | + | chr4_1:64264735-64264754 | None:intergenic | 30.0% | |
| AATTTGCAAAATGGTAACAG+TGG | + | chr4_1:64264736-64264755 | None:intergenic | 30.0% | |
| AGTCCATTGAATTTGCAAAA+TGG | + | chr4_1:64264745-64264764 | None:intergenic | 30.0% | |
| ATTGTGTAACATTAATGGTG+TGG | - | chr4_1:64264846-64264865 | Msa0563800:intron | 30.0% | |
| !!! | TTAATGGTGTGGTTTTTTAC+AGG | - | chr4_1:64264857-64264876 | Msa0563800:intron | 30.0% |
| !!! | TTTTTTACAGGCCAATTTGT+AGG | - | chr4_1:64264869-64264888 | Msa0563800:intron | 30.0% |
| ! | GCTCAATTTCTAAAGAAAGA+CGG | - | chr4_1:64264994-64265013 | Msa0563800:intron | 30.0% |
| TTCTTTGGCCACAATTATAT+AGG | - | chr4_1:64265255-64265274 | Msa0563800:exon | 30.0% | |
| !!! | TTGGACAGTTTTAATTGTGT+TGG | + | chr4_1:64265754-64265773 | None:intergenic | 30.0% |
| ! | TCTTGTAACTACTTCTTTTC+AGG | + | chr4_1:64265825-64265844 | None:intergenic | 30.0% |
| ! | ATGTAAATAGGTCTGAAGTA+TGG | + | chr4_1:64265849-64265868 | None:intergenic | 30.0% |
| TTCAAAGCAATAGATTCACT+TGG | + | chr4_1:64266299-64266318 | None:intergenic | 30.0% | |
| !!! | ATTTGTTTTGGAGGTTTGAA+AGG | - | chr4_1:64266772-64266791 | Msa0563800:five_prime_UTR | 30.0% |
| !!! | TTTGTTTTGGAGGTTTGAAA+GGG | - | chr4_1:64266773-64266792 | Msa0563800:five_prime_UTR | 30.0% |
| TGTAATTTCCAACTTCCTAA+GGG | + | chr4_1:64266866-64266885 | None:intergenic | 30.0% | |
| TTGTAATTTCCAACTTCCTA+AGG | + | chr4_1:64266867-64266886 | None:intergenic | 30.0% | |
| GCATTAATCTTGAGCATTAA+TGG | - | chr4_1:64266916-64266935 | Msa0563800:five_prime_UTR | 30.0% | |
| AATAGTGGCTTTCTAATAAG+AGG | - | chr4_1:64266993-64267012 | Msa0563800:five_prime_UTR | 30.0% | |
| GTGAACTTCTCAACATTAAT+GGG | + | chr4_1:64267036-64267055 | None:intergenic | 30.0% | |
| ATTGGATCCCAAGGTTTATT+TGG | + | chr4_1:64263170-64263189 | None:intergenic | 35.0% | |
| AGATTAGGAAATAGTGAGGT+TGG | + | chr4_1:64263279-64263298 | None:intergenic | 35.0% | |
| CATGAGATTAGGAAATAGTG+AGG | + | chr4_1:64263283-64263302 | None:intergenic | 35.0% | |
| ATAAAGCTGACCAAGAAAGA+AGG | - | chr4_1:64263390-64263409 | Msa0563800:three_prime_UTR | 35.0% | |
| TAAAGCTGACCAAGAAAGAA+GGG | - | chr4_1:64263391-64263410 | Msa0563800:three_prime_UTR | 35.0% | |
| !!! | GTGTTTTTTCCCTTCTTTCT+TGG | + | chr4_1:64263403-64263422 | None:intergenic | 35.0% |
| AAACACCAAGTTCTCTTTCA+AGG | - | chr4_1:64263417-64263436 | Msa0563800:exon | 35.0% | |
| ! | GTTGCATGGAATACCTATTT+TGG | - | chr4_1:64263439-64263458 | Msa0563800:CDS | 35.0% |
| TAAGGATAACACTGCAACTA+AGG | - | chr4_1:64263463-64263482 | Msa0563800:CDS | 35.0% | |
| !! | AAAGCTGGTGCTATCATATT+AGG | - | chr4_1:64263569-64263588 | Msa0563800:CDS | 35.0% |
| !! | TGGTGCTATCATATTAGGAA+AGG | - | chr4_1:64263574-64263593 | Msa0563800:CDS | 35.0% |
| TTCTGGACTTCTTGTACATT+TGG | - | chr4_1:64263811-64263830 | Msa0563800:intron | 35.0% | |
| ! | CTTAGCCTTTACTCAATCTT+AGG | + | chr4_1:64263907-64263926 | None:intergenic | 35.0% |
| AATAACCCAAACTCGATTCT+GGG | - | chr4_1:64264206-64264225 | Msa0563800:intron | 35.0% | |
| CTCATAAGTTAGCGAAAAAG+GGG | + | chr4_1:64264312-64264331 | None:intergenic | 35.0% | |
| CCTCATAAGTTAGCGAAAAA+GGG | + | chr4_1:64264313-64264332 | None:intergenic | 35.0% | |
| GATTATCCCCTTCTTCTTAT+TGG | - | chr4_1:64264401-64264420 | Msa0563800:intron | 35.0% | |
| AATATCAGTAGCAGCAAATC+TGG | - | chr4_1:64264532-64264551 | Msa0563800:intron | 35.0% | |
| TCTGATACAGTCCTACAAAT+TGG | + | chr4_1:64264883-64264902 | None:intergenic | 35.0% | |
| GCATCAAAGTATATCCCAAA+AGG | - | chr4_1:64264964-64264983 | Msa0563800:intron | 35.0% | |
| TCAAAGTATATCCCAAAAGG+TGG | - | chr4_1:64264967-64264986 | Msa0563800:intron | 35.0% | |
| ACTCACACCTAAAAACGTTA+AGG | - | chr4_1:64265094-64265113 | Msa0563800:intron | 35.0% | |
| ! | TTTAAAACCTGTGCAACACA+TGG | - | chr4_1:64265184-64265203 | Msa0563800:intron | 35.0% |
| ATGCCTATAGACAATCCTTT+GGG | - | chr4_1:64265307-64265326 | Msa0563800:five_prime_UTR | 35.0% | |
| ! | TATACCAAACGTCAAGTTGT+TGG | + | chr4_1:64265352-64265371 | None:intergenic | 35.0% |
| TGTTAACGTATCTACTCTAC+TGG | + | chr4_1:64265508-64265527 | None:intergenic | 35.0% | |
| CGTTAACAATGTAAACCTGT+CGG | - | chr4_1:64265520-64265539 | Msa0563800:intron | 35.0% | |
| ! | ATGAACCTGATGACAGTTTT+TGG | - | chr4_1:64265552-64265571 | Msa0563800:intron | 35.0% |
| GATTACCAAAAACTGTCATC+AGG | + | chr4_1:64265560-64265579 | None:intergenic | 35.0% | |
| GATAACTTAATCGGAAGAGT+AGG | - | chr4_1:64265723-64265742 | Msa0563800:five_prime_UTR | 35.0% | |
| ! | TAGAAAGTATAAGAAGGGTG+TGG | - | chr4_1:64265941-64265960 | Msa0563800:intron | 35.0% |
| AATTGATAGGGTTGTTCACT+GGG | + | chr4_1:64266189-64266208 | None:intergenic | 35.0% | |
| GTTGAAATTATCAGGCAAAG+AGG | - | chr4_1:64266218-64266237 | Msa0563800:intron | 35.0% | |
| GTGAAGCTACTAAATCTTTC+AGG | + | chr4_1:64266352-64266371 | None:intergenic | 35.0% | |
| GAAAGATTTAGTAGCTTCAC+CGG | - | chr4_1:64266352-64266371 | Msa0563800:intron | 35.0% | |
| !! | TTTTGGGTGTTTCTCATTGA+AGG | + | chr4_1:64266402-64266421 | None:intergenic | 35.0% |
| CAATGAGAAACACCCAAAAT+TGG | - | chr4_1:64266403-64266422 | Msa0563800:intron | 35.0% | |
| ! | CACATATACCGACCAATTTT+GGG | + | chr4_1:64266418-64266437 | None:intergenic | 35.0% |
| ! | ACACATATACCGACCAATTT+TGG | + | chr4_1:64266419-64266438 | None:intergenic | 35.0% |
| TTGTAGGAGAAAATGGAGTA+TGG | - | chr4_1:64266520-64266539 | Msa0563800:intron | 35.0% | |
| ATGTCAAGATGGTCAGAAAA+TGG | - | chr4_1:64266613-64266632 | Msa0563800:intron | 35.0% | |
| TGTCAAGATGGTCAGAAAAT+GGG | - | chr4_1:64266614-64266633 | Msa0563800:intron | 35.0% | |
| !! | GAGCCATTTGGAATTTGTTT+TGG | - | chr4_1:64266760-64266779 | Msa0563800:five_prime_UTR | 35.0% |
| CCTCCAAAACAAATTCCAAA+TGG | + | chr4_1:64266766-64266785 | None:intergenic | 35.0% | |
| !!! | CCATTTGGAATTTGTTTTGG+AGG | - | chr4_1:64266763-64266782 | Msa0563800:five_prime_UTR | 35.0% |
| GTAATTTCCAACTTCCTAAG+GGG | + | chr4_1:64266865-64266884 | None:intergenic | 35.0% | |
| TGGCTTCAACACAAATAAGT+TGG | - | chr4_1:64266936-64266955 | Msa0563800:five_prime_UTR | 35.0% | |
| AAGTTGGAAATTGCTTATCC+TGG | - | chr4_1:64266952-64266971 | Msa0563800:five_prime_UTR | 35.0% | |
| ! | GAATTTGCTTGCTCAAATAG+TGG | - | chr4_1:64266978-64266997 | Msa0563800:five_prime_UTR | 35.0% |
| GGTGAACTTCTCAACATTAA+TGG | + | chr4_1:64267037-64267056 | None:intergenic | 35.0% | |
| GAGAAGTTCACCAAATAAGA+TGG | - | chr4_1:64267045-64267064 | Msa0563800:five_prime_UTR | 35.0% | |
| TGTGTTGAAGCCATCTTATT+TGG | + | chr4_1:64267058-64267077 | None:intergenic | 35.0% | |
| !!! | CCAAGATGCCTTTTAGAACT+GGG | + | chr4_1:64263340-64263359 | None:intergenic | 40.0% |
| !!! | TCCAAGATGCCTTTTAGAAC+TGG | + | chr4_1:64263341-64263360 | None:intergenic | 40.0% |
| !! | AGTTCTAAAAGGCATCTTGG+AGG | - | chr4_1:64263340-64263359 | Msa0563800:three_prime_UTR | 40.0% |
| TGCAACCTTGAAAGAGAACT+TGG | + | chr4_1:64263425-64263444 | None:intergenic | 40.0% | |
| AGTTCTCTTTCAAGGTTGCA+TGG | - | chr4_1:64263425-64263444 | Msa0563800:exon | 40.0% | |
| GATAGATTGAACACTACTGC+TGG | - | chr4_1:64263485-64263504 | Msa0563800:CDS | 40.0% | |
| GTTACCAAGTTAAGGAAAGC+TGG | - | chr4_1:64263554-64263573 | Msa0563800:CDS | 40.0% | |
| TACAGGTCTAGTAAAGTTCC+TGG | - | chr4_1:64263620-64263639 | Msa0563800:CDS | 40.0% | |
| AAACTCAGAAGAGCTAGTCA+AGG | + | chr4_1:64263774-64263793 | None:intergenic | 40.0% | |
| GCTTGCCTAAGATTGAGTAA+AGG | - | chr4_1:64263899-64263918 | Msa0563800:intron | 40.0% | |
| GAATAACCCAAACTCGATTC+TGG | - | chr4_1:64264205-64264224 | Msa0563800:intron | 40.0% | |
| ! | GATTCTGGGAGGTACAAATT+TGG | - | chr4_1:64264220-64264239 | Msa0563800:intron | 40.0% |
| CATGGCTCTTCATTTAACAC+AGG | + | chr4_1:64264281-64264300 | None:intergenic | 40.0% | |
| CTGTGTTAAATGAAGAGCCA+TGG | - | chr4_1:64264279-64264298 | Msa0563800:intron | 40.0% | |
| !! | CCCTTTTTCGCTAACTTATG+AGG | - | chr4_1:64264310-64264329 | Msa0563800:intron | 40.0% |
| GCCTCATAAGTTAGCGAAAA+AGG | + | chr4_1:64264314-64264333 | None:intergenic | 40.0% | |
| TGTGCAGAATCCATACACAT+TGG | - | chr4_1:64264478-64264497 | Msa0563800:intron | 40.0% | |
| CAAGGATCATCCAATGTGTA+TGG | + | chr4_1:64264491-64264510 | None:intergenic | 40.0% | |
| TACACATTGGATGATCCTTG+TGG | - | chr4_1:64264491-64264510 | Msa0563800:intron | 40.0% | |
| !! | TTGTGGTTCAAGTAGTGGAT+CGG | - | chr4_1:64264508-64264527 | Msa0563800:intron | 40.0% |
| ! | AATCTGGTTACTGTGTCACT+TGG | - | chr4_1:64264548-64264567 | Msa0563800:intron | 40.0% |
| !! | TGAGACCAACTGTTGGTTTA+AGG | + | chr4_1:64264628-64264647 | None:intergenic | 40.0% |
| GACCGACAGTTACAATTTCA+CGG | - | chr4_1:64264770-64264789 | Msa0563800:intron | 40.0% | |
| GTCCGTGAAATTGTAACTGT+CGG | + | chr4_1:64264775-64264794 | None:intergenic | 40.0% | |
| TGTGTTCTTGAAACCATAGC+AGG | - | chr4_1:64264910-64264929 | Msa0563800:intron | 40.0% | |
| !!! | AGGCATCGACACTTTTGATA+AGG | - | chr4_1:64264930-64264949 | Msa0563800:intron | 40.0% |
| ! | ATTGAGCATAGCCACCTTTT+GGG | + | chr4_1:64264981-64265000 | None:intergenic | 40.0% |
| ! | AATTGAGCATAGCCACCTTT+TGG | + | chr4_1:64264982-64265001 | None:intergenic | 40.0% |
| !! | CTAAAGAAAGACGGACTAAG+AGG | - | chr4_1:64265003-64265022 | Msa0563800:intron | 40.0% |
| GGACTAAGAGGAAAGAGATT+AGG | - | chr4_1:64265015-64265034 | Msa0563800:intron | 40.0% | |
| TATCTAACCATGTGTTGCAC+AGG | + | chr4_1:64265194-64265213 | None:intergenic | 40.0% | |
| GATGCCTATAGACAATCCTT+TGG | - | chr4_1:64265306-64265325 | Msa0563800:five_prime_UTR | 40.0% | |
| ACTCCCAAAGGATTGTCTAT+AGG | + | chr4_1:64265313-64265332 | None:intergenic | 40.0% | |
| TCATTTAACATGATCAGCCG+TGG | + | chr4_1:64265599-64265618 | None:intergenic | 40.0% | |
| ACTGTCCAAAATTTGGGGAA+TGG | - | chr4_1:64265765-64265784 | Msa0563800:five_prime_UTR | 40.0% | |
| ! | TGTCACCATTCCCCAAATTT+TGG | + | chr4_1:64265773-64265792 | None:intergenic | 40.0% |
| !! | TACTTCTTTTCAGGAGCGAT+AGG | + | chr4_1:64265816-64265835 | None:intergenic | 40.0% |
| CTACTATACGCCTGCTTAAT+GGG | + | chr4_1:64265924-64265943 | None:intergenic | 40.0% | |
| TCTACTATACGCCTGCTTAA+TGG | + | chr4_1:64265925-64265944 | None:intergenic | 40.0% | |
| ! | AAAGTATAAGAAGGGTGTGG+AGG | - | chr4_1:64265944-64265963 | Msa0563800:intron | 40.0% |
| CAATTGATAGGGTTGTTCAC+TGG | + | chr4_1:64266190-64266209 | None:intergenic | 40.0% | |
| GAGAAACACCCAAAATTGGT+CGG | - | chr4_1:64266407-64266426 | Msa0563800:intron | 40.0% | |
| ! | CTGAAAAGACGAACGGTTTT+GGG | - | chr4_1:64266563-64266582 | Msa0563800:intron | 40.0% |
| ! | ATGCTGTAGTGACACCTTTT+TGG | - | chr4_1:64266668-64266687 | Msa0563800:intron | 40.0% |
| ATGTGGCTAAAGGACCAAAA+AGG | + | chr4_1:64266685-64266704 | None:intergenic | 40.0% | |
| AATAGCCAGTATGTGGCTAA+AGG | + | chr4_1:64266695-64266714 | None:intergenic | 40.0% | |
| ! | TTTAGCCACATACTGGCTAT+TGG | - | chr4_1:64266694-64266713 | Msa0563800:five_prime_UTR | 40.0% |
| TGTTCCAGCAGGATATGAAA+AGG | - | chr4_1:64266735-64266754 | Msa0563800:five_prime_UTR | 40.0% | |
| GTTCCAGCAGGATATGAAAA+GGG | - | chr4_1:64266736-64266755 | Msa0563800:five_prime_UTR | 40.0% | |
| TATGAAAAGGGTGAGCCATT+TGG | - | chr4_1:64266748-64266767 | Msa0563800:five_prime_UTR | 40.0% | |
| AGTGGCTTTCTAATAAGAGG+TGG | - | chr4_1:64266996-64267015 | Msa0563800:five_prime_UTR | 40.0% | |
| CTCACTACTCTACTCAAAGT+TGG | - | chr4_1:64267187-64267206 | Msa0563800:five_prime_UTR | 40.0% | |
| CAATGGGATATTGGATCCCA+AGG | + | chr4_1:64263179-64263198 | None:intergenic | 45.0% | |
| TTCCTAATCTCATGCCCTTG+AGG | - | chr4_1:64263289-64263308 | Msa0563800:three_prime_UTR | 45.0% | |
| !! | TGATTTGGTTGAGGCCTCAA+GGG | + | chr4_1:64263306-64263325 | None:intergenic | 45.0% |
| !! | TTGATTTGGTTGAGGCCTCA+AGG | + | chr4_1:64263307-64263326 | None:intergenic | 45.0% |
| !! | CCCAGTTCTAAAAGGCATCT+TGG | - | chr4_1:64263337-64263356 | Msa0563800:three_prime_UTR | 45.0% |
| TCTGCTTGTGCTAATGCATC+TGG | + | chr4_1:64263371-64263390 | None:intergenic | 45.0% | |
| CAGGTGTGGTTACCAAGTTA+AGG | - | chr4_1:64263546-64263565 | Msa0563800:CDS | 45.0% | |
| AGCACCAGCTTTCCTTAACT+TGG | + | chr4_1:64263561-64263580 | None:intergenic | 45.0% | |
| ATGTGACCACTCACTCAAAG+TGG | + | chr4_1:64263600-64263619 | None:intergenic | 45.0% | |
| TGAGTGAGTGGTCACATTAC+AGG | - | chr4_1:64263603-64263622 | Msa0563800:CDS | 45.0% | |
| AGGTCTAGTAAAGTTCCTGG+TGG | - | chr4_1:64263623-64263642 | Msa0563800:CDS | 45.0% | |
| CTAGTAAAGTTCCTGGTGGT+TGG | - | chr4_1:64263627-64263646 | Msa0563800:CDS | 45.0% | |
| GTAAAGGCTAAGTGTCCGTT+CGG | - | chr4_1:64263915-64263934 | Msa0563800:intron | 45.0% | |
| TACCTCCCAGAATCGAGTTT+GGG | + | chr4_1:64264214-64264233 | None:intergenic | 45.0% | |
| GATCCTTGTGGTTCAAGTAG+TGG | - | chr4_1:64264503-64264522 | Msa0563800:intron | 45.0% | |
| GATCCACTACTTGAACCACA+AGG | + | chr4_1:64264509-64264528 | None:intergenic | 45.0% | |
| ! | TCACTTGGTACTGAAACCGA+TGG | - | chr4_1:64264563-64264582 | Msa0563800:intron | 45.0% |
| AGGGCATAAAATGGAGCCAT+CGG | + | chr4_1:64264582-64264601 | None:intergenic | 45.0% | |
| ! | AAGGCCTGAAGGGCATAAAA+TGG | + | chr4_1:64264591-64264610 | None:intergenic | 45.0% |
| CTACTAGTGAGACCAACTGT+TGG | + | chr4_1:64264635-64264654 | None:intergenic | 45.0% | |
| GTGTAGTTCCAATTAGCCCA+AGG | - | chr4_1:64264660-64264679 | Msa0563800:intron | 45.0% | |
| !! | AAAAGTGTCGATGCCTGCTA+TGG | + | chr4_1:64264926-64264945 | None:intergenic | 45.0% |
| GTGAGAGACTACTACGAGTT+TGG | - | chr4_1:64265042-64265061 | Msa0563800:intron | 45.0% | |
| GTTCATTCAAGATTGCCGAC+AGG | + | chr4_1:64265538-64265557 | None:intergenic | 45.0% | |
| TGTGGAGGATGATACTCATG+TGG | - | chr4_1:64265959-64265978 | Msa0563800:intron | 45.0% | |
| TAGGGTTGTTCACTGGGAAT+GGG | + | chr4_1:64266183-64266202 | None:intergenic | 45.0% | |
| ATAGGGTTGTTCACTGGGAA+TGG | + | chr4_1:64266184-64266203 | None:intergenic | 45.0% | |
| ACATCTGCCAAACTGTTCAC+CGG | + | chr4_1:64266374-64266393 | None:intergenic | 45.0% | |
| GGAGTATGGCCAAGATGTAT+TGG | - | chr4_1:64266534-64266553 | Msa0563800:intron | 45.0% | |
| CAGCTTGCACCAATACATCT+TGG | + | chr4_1:64266546-64266565 | None:intergenic | 45.0% | |
| GTGCAAGCTGAAAAGACGAA+CGG | - | chr4_1:64266556-64266575 | Msa0563800:intron | 45.0% | |
| ! | GCTGAAAAGACGAACGGTTT+TGG | - | chr4_1:64266562-64266581 | Msa0563800:intron | 45.0% |
| TTGGTCCTTTAGCCACATAC+TGG | - | chr4_1:64266687-64266706 | Msa0563800:five_prime_UTR | 45.0% | |
| AACCTCCAATAGCCAGTATG+TGG | + | chr4_1:64266702-64266721 | None:intergenic | 45.0% | |
| ! | TCACCCTTTTCATATCCTGC+TGG | + | chr4_1:64266742-64266761 | None:intergenic | 45.0% |
| ATTTCCAACTTCCTAAGGGG+AGG | + | chr4_1:64266862-64266881 | None:intergenic | 45.0% | |
| TGAGCAAGCAAATTCACTCC+AGG | + | chr4_1:64266973-64266992 | None:intergenic | 45.0% | |
| !! | GCTGGCTCTTTTGCACTTCT+TGG | - | chr4_1:64263503-64263522 | Msa0563800:CDS | 50.0% |
| GTAACCACACCTGCATCTCT+TGG | + | chr4_1:64263539-64263558 | None:intergenic | 50.0% | |
| ! | GAAAGGCCACTTTGAGTGAG+TGG | - | chr4_1:64263591-64263610 | Msa0563800:CDS | 50.0% |
| TGGAATGCTAGAGGTGGACA+AGG | - | chr4_1:64263647-64263666 | Msa0563800:CDS | 50.0% | |
| TGCTAGAGGTGGACAAGGAA+AGG | - | chr4_1:64263652-64263671 | Msa0563800:CDS | 50.0% | |
| AACCCAAACTCGATTCTGGG+AGG | - | chr4_1:64264209-64264228 | Msa0563800:intron | 50.0% | |
| GTACCTCCCAGAATCGAGTT+TGG | + | chr4_1:64264215-64264234 | None:intergenic | 50.0% | |
| GAAAAAGGGGTCAGTCTCCA+TGG | + | chr4_1:64264299-64264318 | None:intergenic | 50.0% | |
| ! | GGCTCCATTTTATGCCCTTC+AGG | - | chr4_1:64264584-64264603 | Msa0563800:intron | 50.0% |
| CCACTGAGTTAAGGCCTGAA+GGG | + | chr4_1:64264601-64264620 | None:intergenic | 50.0% | |
| ACCACTGAGTTAAGGCCTGA+AGG | + | chr4_1:64264602-64264621 | None:intergenic | 50.0% | |
| TTCAGGCCTTAACTCAGTGG+TGG | - | chr4_1:64264601-64264620 | Msa0563800:intron | 50.0% | |
| TCAGGCCTTAACTCAGTGGT+GGG | - | chr4_1:64264602-64264621 | Msa0563800:intron | 50.0% | |
| TAAGGCCCACCACTGAGTTA+AGG | + | chr4_1:64264610-64264629 | None:intergenic | 50.0% | |
| GTGGGCCTTAAACCAACAGT+TGG | - | chr4_1:64264620-64264639 | Msa0563800:intron | 50.0% | |
| ! | GTTGGTCTCACTAGTAGAGC+AGG | - | chr4_1:64264638-64264657 | Msa0563800:intron | 50.0% |
| GTGTCTTGCCTTGGGCTAAT+TGG | + | chr4_1:64264671-64264690 | None:intergenic | 50.0% | |
| ACCCAACTGTGTCTTGCCTT+GGG | + | chr4_1:64264679-64264698 | None:intergenic | 50.0% | |
| TACCCAACTGTGTCTTGCCT+TGG | + | chr4_1:64264680-64264699 | None:intergenic | 50.0% | |
| TCGGCCAACAACTTGACGTT+TGG | - | chr4_1:64265345-64265364 | Msa0563800:five_prime_UTR | 50.0% | |
| CTATACGCCTGCTTAATGGG+AGG | + | chr4_1:64265921-64265940 | None:intergenic | 50.0% | |
| !! | CAGGCAAAGAGGTGCAGTTT+TGG | - | chr4_1:64266229-64266248 | Msa0563800:intron | 50.0% |
| AGCTTCACCGGTGAACAGTT+TGG | - | chr4_1:64266364-64266383 | Msa0563800:intron | 50.0% | |
| ! | AGCCACATACTGGCTATTGG+AGG | - | chr4_1:64266697-64266716 | Msa0563800:five_prime_UTR | 50.0% |
| CTGGCTATTGGAGGTTATCC+TGG | - | chr4_1:64266706-64266725 | Msa0563800:five_prime_UTR | 50.0% | |
| ! | GGCCTCAAGGGCATGAGATT+AGG | + | chr4_1:64263294-64263313 | None:intergenic | 55.0% |
| TCAGTCGTGCCAAGAGATGC+AGG | - | chr4_1:64263527-64263546 | Msa0563800:CDS | 55.0% | |
| CCTCTAGCATTCCAACCACC+AGG | + | chr4_1:64263641-64263660 | None:intergenic | 55.0% | |
| CCTGGTGGTTGGAATGCTAG+AGG | - | chr4_1:64263638-64263657 | Msa0563800:CDS | 55.0% | |
| GGTGGTTGGAATGCTAGAGG+TGG | - | chr4_1:64263641-64263660 | Msa0563800:CDS | 55.0% | |
| CCCTTCAGGCCTTAACTCAG+TGG | - | chr4_1:64264598-64264617 | Msa0563800:intron | 55.0% | |
| AGCCCAAGGCAAGACACAGT+TGG | - | chr4_1:64264674-64264693 | Msa0563800:intron | 55.0% | |
| GCCCAAGGCAAGACACAGTT+GGG | - | chr4_1:64264675-64264694 | Msa0563800:intron | 55.0% | |
| CACAGTTGGGTAAGCACGCT+CGG | - | chr4_1:64264688-64264707 | Msa0563800:intron | 55.0% | |
| ACAGTTGGGTAAGCACGCTC+GGG | - | chr4_1:64264689-64264708 | Msa0563800:intron | 55.0% | |
| GCGAAGACCTCCCATTAAGC+AGG | - | chr4_1:64265911-64265930 | Msa0563800:intron | 55.0% | |
| TCAGAAAGCCACCTCCCCTT+AGG | - | chr4_1:64266848-64266867 | Msa0563800:five_prime_UTR | 55.0% | |
| TCCAACTTCCTAAGGGGAGG+TGG | + | chr4_1:64266859-64266878 | None:intergenic | 55.0% | |
| CGTGCCAAGAGATGCAGGTG+TGG | - | chr4_1:64263532-64263551 | Msa0563800:CDS | 60.0% | |
| CCTGCTGGAACACTCACTCC+AGG | + | chr4_1:64266727-64266746 | None:intergenic | 60.0% | |
| CCTGGAGTGAGTGTTCCAGC+AGG | - | chr4_1:64266724-64266743 | Msa0563800:five_prime_UTR | 60.0% | |
| GCCACCTCCCCTTAGGAAGT+TGG | - | chr4_1:64266855-64266874 | Msa0563800:five_prime_UTR | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_1 | gene | 64263085 | 64267259 | 64263085 | ID=Msa0563800;Name=Msa0563800 |
| chr4_1 | mRNA | 64263085 | 64267259 | 64263085 | ID=Msa0563800-mRNA-1;Parent=Msa0563800;Name=Msa0563800-mRNA-1;_AED=0.27;_eAED=0.27;_QI=940|0.75|0.6|1|1|1|5|344|206 |
| chr4_1 | exon | 64263085 | 64263818 | 64263085 | ID=Msa0563800-mRNA-1:exon:20558;Parent=Msa0563800-mRNA-1 |
| chr4_1 | exon | 64263920 | 64264112 | 64263920 | ID=Msa0563800-mRNA-1:exon:20557;Parent=Msa0563800-mRNA-1 |
| chr4_1 | exon | 64265229 | 64265442 | 64265229 | ID=Msa0563800-mRNA-1:exon:20556;Parent=Msa0563800-mRNA-1 |
| chr4_1 | exon | 64265685 | 64265859 | 64265685 | ID=Msa0563800-mRNA-1:exon:20555;Parent=Msa0563800-mRNA-1 |
| chr4_1 | exon | 64266671 | 64267259 | 64266671 | ID=Msa0563800-mRNA-1:exon:20554;Parent=Msa0563800-mRNA-1 |
| chr4_1 | five_prime_UTR | 64266671 | 64267259 | 64266671 | ID=Msa0563800-mRNA-1:five_prime_utr;Parent=Msa0563800-mRNA-1 |
| chr4_1 | five_prime_UTR | 64265685 | 64265859 | 64265685 | ID=Msa0563800-mRNA-1:five_prime_utr;Parent=Msa0563800-mRNA-1 |
| chr4_1 | five_prime_UTR | 64265267 | 64265442 | 64265267 | ID=Msa0563800-mRNA-1:five_prime_utr;Parent=Msa0563800-mRNA-1 |
| chr4_1 | CDS | 64265229 | 64265266 | 64265229 | ID=Msa0563800-mRNA-1:cds;Parent=Msa0563800-mRNA-1 |
| chr4_1 | CDS | 64263920 | 64264112 | 64263920 | ID=Msa0563800-mRNA-1:cds;Parent=Msa0563800-mRNA-1 |
| chr4_1 | CDS | 64263429 | 64263818 | 64263429 | ID=Msa0563800-mRNA-1:cds;Parent=Msa0563800-mRNA-1 |
| chr4_1 | three_prime_UTR | 64263085 | 64263428 | 64263085 | ID=Msa0563800-mRNA-1:three_prime_utr;Parent=Msa0563800-mRNA-1 |
| Gene Sequence |
| Protein sequence |
