AlfalfaGEDB | Msa0760570

M. sativa cultivar zhongmu-4 / Msa0760570

KEGG: K01358
GO: GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006996 GO:0008150 GO:0009368 GO:0009507 GO:0009526 GO:0009532 GO:0009534 GO:0009535 GO:0009536 GO:0009570 GO:0009579 GO:0009657 GO:0009658 GO:0009840 GO:0009941 GO:0009987 GO:0016020 GO:0016043 GO:0031967 GO:0031975 GO:0031976 GO:0031984 GO:0032991 GO:0034357 GO:0040034 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0048506 GO:0048509 GO:0048510 GO:0050789 GO:0050793 GO:0055035 GO:0065007 GO:0071840
PFAM: PF00574.26

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0760570	sp\|Q94B60\|CLPP4_ARATH	80.531	226	40	1	79	300	67	292	3.82e-123	357

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0760570	G7K6U0	88.925	307	17	3	1	300	1	297	0.0	532

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TFs/TRs:

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Gene ID	Type	Classification
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Protein Kinases:

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0001510	Msa0760570	0.825124	5.560521e-54	-8.615850e-47
Msa0024070	Msa0760570	0.830533	2.784477e-55	-8.615850e-47
Msa0047400	Msa0760570	0.810798	9.635489e-51	-8.615850e-47
Msa0118700	Msa0760570	0.805071	1.593064e-49	-8.615850e-47
Msa0131230	Msa0760570	0.800909	1.155274e-48	-8.615850e-47
Msa0164530	Msa0760570	0.810789	9.677901e-51	-8.615850e-47
Msa0168360	Msa0760570	0.836164	1.098296e-56	-8.615850e-47
Msa0199160	Msa0760570	0.839954	1.163514e-57	-8.615850e-47
Msa0217300	Msa0760570	0.813240	2.828959e-51	-8.615850e-47
Msa0315720	Msa0760570	0.806343	8.612458e-50	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0760570	MtrunA17_Chr5g0409311	88.925	307	17	3	1	300	1	297	0.0	532
Msa0760570	MtrunA17_Chr7g0251451	50.673	223	98	3	41	263	41	251	7.04e-73	226
Msa0760570	MtrunA17_Chr7g0270061	48.148	189	96	1	96	282	113	301	3.86e-57	186
Msa0760570	MtrunA17_Chr1g0194601	48.677	189	95	1	96	282	116	304	7.51e-57	185
Msa0760570	MtrunA17_Chr4g0038261	41.799	189	109	1	78	265	31	219	1.41e-47	159
Msa0760570	MtrunA17_Chr4g0034751	40.957	188	111	0	78	265	86	273	5.67e-47	159
Msa0760570	MtrunA17_Chr4g0056771	33.953	215	135	2	55	262	52	266	1.04e-37	135
Msa0760570	MtrunA17_Chr1g0207341	34.270	178	107	2	95	262	159	336	1.15e-28	113
Msa0760570	MtrunA17_Chr4g0055551	36.612	183	108	1	91	265	104	286	1.32e-27	108
Msa0760570	MtrunA17_Chr7g0272191	31.020	245	156	3	50	281	69	313	3.75e-27	108

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0760570	AT5G45390.1	80.531	226	40	1	79	300	67	292	3.89e-124	357
Msa0760570	AT1G66670.1	51.596	188	91	0	76	263	70	257	3.33e-65	207
Msa0760570	AT1G02560.1	52.096	167	80	0	96	262	119	285	2.92e-58	189
Msa0760570	AT1G11750.2	41.489	188	110	0	78	265	101	288	5.72e-48	162
Msa0760570	AT1G11750.1	42.458	179	103	0	87	265	92	270	7.62e-48	161
Msa0760570	AT5G23140.1	41.176	187	109	1	78	263	34	220	1.36e-47	160
Msa0760570	ATCG00670.1	41.860	172	99	1	91	261	22	193	5.17e-41	141
Msa0760570	AT1G12410.1	37.209	172	108	0	91	262	89	260	3.66e-39	139
Msa0760570	AT4G17040.1	40.437	183	101	1	91	265	105	287	1.65e-37	135
Msa0760570	AT1G09130.2	32.558	258	154	4	27	264	48	305	1.04e-30	118

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Find 102 sgRNAs with CRISPR-Local

Find 509 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGCTTGATATCTTTAGT+AGG	0.425124	5_2:-17095006	None:intergenic
AAAGACAAATAAAACTGCCA+CGG	0.646339	5_2:-17101183	None:intergenic
AACTTGTTCAAGTGAGCGGC+CGG	0.548501	5_2:-17100824	None:intergenic
AAGCACCACAACTCTCACAA+TGG	0.683599	5_2:+17094606	Msa0760570:exon
AAGTTCTGAAAGATATCGAT+AGG	0.559233	5_2:+17100842	Msa0760570:CDS
AATGTCTTCGCCACAGACTC+CGG	0.530994	5_2:+17094846	Msa0760570:CDS
ACAGCCTCAATTATCCTAGG+TGG	0.682148	5_2:+17100646	Msa0760570:CDS
ACGATGCGGTGCAGCTTGTT+AGG	0.301821	5_2:+17100584	Msa0760570:CDS
ACTCCGGAACGGGCTATGAG+AGG	0.646659	5_2:+17094862	Msa0760570:CDS
ACTTAAGATTCATCCCCTTG+CGG	0.632344	5_2:+17101077	Msa0760570:three_prime_UTR

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
GTTAAAGTTTGAATCTTTGG+AGG	-	chr5_2:17094794-17094813	None:intergenic	30.0%
AATGTGTAAAATATGTGCCT+TGG	+	chr5_2:17095101-17095120	Msa0760570:intron	30.0%
TAAAATATGTGCCTTGGAAT+TGG	+	chr5_2:17095107-17095126	Msa0760570:intron	30.0%
TAAACCTTTATCCAATTCCA+AGG	-	chr5_2:17095121-17095140	None:intergenic	30.0%
TTGTATGTGATAAGGTAGAT+TGG	+	chr5_2:17095156-17095175	Msa0760570:intron	30.0%
TGTATGTGATAAGGTAGATT+GGG	+	chr5_2:17095157-17095176	Msa0760570:intron	30.0%
ACTTAAAAGATCACCAATAG+AGG	-	chr5_2:17095415-17095434	None:intergenic	30.0%
ACAAAAAATAGGGACCAAAT+TGG	+	chr5_2:17095645-17095664	Msa0760570:intron	30.0%
CGTTAACTTATGTACCAATT+TGG	-	chr5_2:17095662-17095681	None:intergenic	30.0%
TTTGAGAGAAACTAACAGAA+AGG	+	chr5_2:17095687-17095706	Msa0760570:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr5_2	gene	17094559	17101282	17094559	ID=Msa0760570;Name=Msa0760570
chr5_2	mRNA	17094559	17101282	17094559	ID=Msa0760570-mRNA-1;Parent=Msa0760570;Name=Msa0760570-mRNA-1;_AED=0.03;_eAED=0.03;_QI=66\|1\|1\|1\|1\|1\|2\|244\|300
chr5_2	exon	17094559	17095055	17094559	ID=Msa0760570-mRNA-1:exon:7609;Parent=Msa0760570-mRNA-1
chr5_2	exon	17100567	17101282	17100567	ID=Msa0760570-mRNA-1:exon:7610;Parent=Msa0760570-mRNA-1
chr5_2	five_prime_UTR	17094559	17094624	17094559	ID=Msa0760570-mRNA-1:five_prime_utr;Parent=Msa0760570-mRNA-1
chr5_2	CDS	17094625	17095055	17094625	ID=Msa0760570-mRNA-1:cds;Parent=Msa0760570-mRNA-1
chr5_2	CDS	17100567	17101038	17100567	ID=Msa0760570-mRNA-1:cds;Parent=Msa0760570-mRNA-1
chr5_2	three_prime_UTR	17101039	17101282	17101039	ID=Msa0760570-mRNA-1:three_prime_utr;Parent=Msa0760570-mRNA-1

Gene Sequence

>Msa0760570

ATGGATTTACTCACAACCTCTCTTTCTCATCCTTCAACTTCCCTTCCATCTCTCTCACAACGCATTCCCACCCTCTTTTCAAAACCACCCATTTCCTCTTTCAACCCTAAACCACAATTTCGCACAACTCCAATCAACTGCGTCCTCACAACTCCATCAACAAAACCCTCCAAAGATTCAAACTTTAACCCCCAACTTCAAAAACCCACTATCACCTTTCAAATGTCTTCGCCACAGACTCCGGAACGGGCTATGAGAGGTGCTGAATCTGATACTATGGGGTTGTTGTTGAGGGAGAGGATTGTGTTCTTGGGTAGTGAAATTGATGATTTTGTTGCTGATGCTATTATGAGTCAGTTGTTGCTTTTGGATGCTCAAGATCCTACTAAAGATATCAAGCTTTTTATCAATTCTCCCGGTGGTTCTCTCAGTGCTACCATGGCTATCTACGATGCGGTGCAGCTTGTTAGGGCGGATGTATCCACAATTGCAATGGGCATTGCAGCATCAACAGCCTCAATTATCCTAGGTGGTGGCACCAAAGGTAAGCGGCTAGCTATGCCTAATACGCGAATCATGATTGCTCAACCACCTGGAGGTGCTAGTGGACAAGCTATAGATGTAGAAATTCAAGCTAAAGAACTCATGCACAACAAGAATAATGTGGTCAGAATCATATCTTCCTTCACCGGCCGCTCACTTGAACAAGTTCTGAAAGATATCGATAGGGATAGATATCTGTCTCCAATTGAAGCGGTGGAATATGGAATTATTGACGGGGTAATCGATAGAGAAATGATTATTCCTCTCCTGCCAGTGCCAGAAAAGGTGGAAGAAGCAACACTAAACACCGATGATCCGAATTTCCTAACCCCACATATCCCAGATGATGAGATATACTAG

Protein sequence

>Msa0760570

MDLLTTSLSHPSTSLPSLSQRIPTLFSKPPISSFNPKPQFRTTPINCVLTTPSTKPSKDSNFNPQLQKPTITFQMSSPQTPERAMRGAESDTMGLLLRERIVFLGSEIDDFVADAIMSQLLLLDAQDPTKDIKLFINSPGGSLSATMAIYDAVQLVRADVSTIAMGIAASTASIILGGGTKGKRLAMPNTRIMIAQPPGGASGQAIDVEIQAKELMHNKNNVVRIISSFTGRSLEQVLKDIDRDRYLSPIEAVEYGIIDGVIDREMIIPLLPVPEKVEEATLNTDDPNFLTPHIPDDEIY*