AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0363090


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0363090 MtrunA17_Chr3g0095111 98.254 401 7 0 1 401 1 401 0.0 811
Msa0363090 MtrunA17_Chr5g0442131 80.798 401 77 0 1 401 1 401 0.0 687
Msa0363090 MtrunA17_Chr5g0445301 79.412 170 34 1 233 401 7 176 1.51e-93 278
Msa0363090 MtrunA17_Chr5g0428161 75.806 124 30 0 163 286 6 129 3.65e-64 201
Msa0363090 MtrunA17_Chr5g0428171 79.365 63 13 0 28 90 1 63 1.68e-26 101
Msa0363090 MtrunA17_Chr5g0445291 72.500 40 11 0 81 120 1 40 4.76e-16 72.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0363090 AT2G13360.3 85.786 401 57 0 1 401 1 401 0.0 731
Msa0363090 AT2G13360.1 85.786 401 57 0 1 401 1 401 0.0 731
Msa0363090 AT2G13360.2 85.786 401 57 0 1 401 1 401 0.0 731

Find 144 sgRNAs with CRISPR-Local

Find 296 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTTCTCTTGCAACAAATATT+AGG 0.119904 3_1:+55232217 Msa0363090:three_prime_UTR
CAACATCGACATTAAATTTA+AGG 0.143214 3_1:-55229458 None:intergenic
CTTCAAGGACTTAGTCTTAT+AGG 0.172852 3_1:+55232180 Msa0363090:three_prime_UTR
CAACTATTGGGTTGTCTTGC+TGG 0.175642 3_1:+55231827 Msa0363090:CDS
TGTTGGTTACCCAGTAAAAT+TGG 0.196012 3_1:+55231871 Msa0363090:CDS
TTTGAAGCTTCAATGGCTTT+AGG 0.239169 3_1:-55230331 None:intergenic
TCTAACTGTGGCCAAGTTAT+TGG 0.247414 3_1:-55229601 None:intergenic
CTTTCCCTTCCTACTGGTAT+TGG 0.249614 3_1:+55230292 Msa0363090:CDS
TAAGTCCTTGAAGAAGAATT+TGG 0.255712 3_1:-55232170 None:intergenic
TCTACAAGATGGGAACTTAT+TGG 0.275033 3_1:+55230404 Msa0363090:CDS
TTGAAGCTTCAATGGCTTTA+GGG 0.275233 3_1:-55230330 None:intergenic
AACGATAGTCCTCGTTGTTT+CGG 0.283890 3_1:-55228280 None:intergenic
TTCTCTTGCAACAAATATTA+GGG 0.290681 3_1:+55232218 Msa0363090:three_prime_UTR
GGGAAGATGGATTATGTTAA+TGG 0.310016 3_1:+55228188 Msa0363090:exon
CCAGCCCTCCTCCTTGTTGA+TGG 0.311001 3_1:+55230190 Msa0363090:CDS
TTCCCATCTTGTAGAACTTC+AGG 0.327105 3_1:-55230396 None:intergenic
AAAGAAAACTCGAAGTGATT+TGG 0.339222 3_1:-55230359 None:intergenic
TTGGCCAATTCAGTTTGCTT+TGG 0.339533 3_1:+55229418 Msa0363090:CDS
TGGCCAATTCAGTTTGCTTT+GGG 0.347985 3_1:+55229419 Msa0363090:CDS
CGTATTGTATCTTTCGTGAT+TGG 0.350211 3_1:+55229399 Msa0363090:CDS
ATTGCAAGGCACAATCGTTT+AGG 0.351182 3_1:+55230508 Msa0363090:CDS
TCCTACTGGTATTGGATTTG+TGG 0.355399 3_1:+55230300 Msa0363090:CDS
AGAAACCACCTCTTTGTTCC+AGG 0.362779 3_1:+55228218 Msa0363090:CDS
AAAGTTATGCCAAGAGCATT+TGG 0.367129 3_1:+55227196 Msa0363090:five_prime_UTR
ACAAAGAGGTGGTTTCTTCC+TGG 0.368631 3_1:-55228212 None:intergenic
TTTGTGAGAGCTGGAATTGC+AGG 0.372944 3_1:-55228305 None:intergenic
TACAATTTGAGCTTAGGTTT+GGG 0.376409 3_1:+55231029 Msa0363090:CDS
ATATTCCTCTCATTCCTTCA+AGG 0.379866 3_1:+55231933 Msa0363090:CDS
TCTATAAAAGTGTCAAATAA+AGG 0.383338 3_1:-55232145 None:intergenic
TGATTCTGCACACACTATAA+AGG 0.387046 3_1:+55229539 Msa0363090:CDS
TTGGTTCAGGTACCGGTGCT+TGG 0.388560 3_1:+55229340 Msa0363090:intron
ATACAATTTGAGCTTAGGTT+TGG 0.393748 3_1:+55231028 Msa0363090:CDS
CGTCTTCAAGAGAGTTCAAA+AGG 0.393874 3_1:-55232043 None:intergenic
AAAAGATACAATTTGAGCTT+AGG 0.398290 3_1:+55231023 Msa0363090:CDS
CAACCCAAAGCAAACTGAAT+TGG 0.402256 3_1:-55229422 None:intergenic
GGAGTAGATGTGGCCATAAC+TGG 0.407058 3_1:+55230256 Msa0363090:CDS
AGAGACCAAATTCTTCTTCA+AGG 0.412038 3_1:+55232165 Msa0363090:three_prime_UTR
TCAGGTAGTTTGGTGAAGTA+TGG 0.413909 3_1:-55227245 None:intergenic
TTGGGACTAAACAAAGTTGC+TGG 0.415993 3_1:+55231047 Msa0363090:CDS
TGAGTGTACCTCAGGTAGTT+TGG 0.417771 3_1:-55227255 None:intergenic
ACCTGGTCCGGTATGTTAAC+CGG 0.419216 3_1:-55228242 None:intergenic
TGGTTCAGGTACCGGTGCTT+GGG 0.420179 3_1:+55229341 Msa0363090:intron
TCCGGTATGTTAACCGGCCC+TGG 0.422439 3_1:-55228236 None:intergenic
CTTCAAGGATTTGAGTTACA+TGG 0.423165 3_1:+55231948 Msa0363090:exon
CGATTTCCGTATGGACGAAT+GGG 0.433716 3_1:+55230234 Msa0363090:CDS
TTTGAAGAATTGCACACAAA+AGG 0.438210 3_1:+55230920 Msa0363090:CDS
CATGTAACTCAAATCCTTGA+AGG 0.438228 3_1:-55231947 None:intergenic
AAATTTCAAGCAAGGGAAGA+TGG 0.440926 3_1:+55228175 Msa0363090:exon
GTTGTTCCTCCTTACATTGA+CGG 0.446006 3_1:+55230975 Msa0363090:CDS
GTTGGTTACCCAGTAAAATT+GGG 0.446538 3_1:+55231872 Msa0363090:CDS
TCTCCCTCTTATCTACTACT+TGG 0.450916 3_1:+55227108 Msa0363090:five_prime_UTR
TTGTCCAAGTAGTAGATAAG+AGG 0.452694 3_1:-55227112 None:intergenic
TATATAGGTGGTTCTTTGGT+GGG 0.457428 3_1:+55228115 Msa0363090:intron
AGCTGAATGGAAGGAGTGTA+TGG 0.458223 3_1:-55230427 None:intergenic
GGGACAAGAAAGTAGGAGAA+TGG 0.462118 3_1:+55227005 Msa0363090:five_prime_UTR
TAAATTTAATGTCGATGTTG+TGG 0.462439 3_1:+55229461 Msa0363090:CDS
ACGGAAATCGAGAGCACAAA+TGG 0.462702 3_1:-55230221 None:intergenic
ACGGTGCTGAAGTTGTTAGA+AGG 0.464067 3_1:+55230994 Msa0363090:CDS
CTGCCACTGCCAAATGCTCT+TGG 0.464279 3_1:-55227205 None:intergenic
CCAGTAGTAGGGATAAGAAA+TGG 0.469745 3_1:-55228377 None:intergenic
CGTACAACAATACCAGTAGT+AGG 0.470380 3_1:-55228389 None:intergenic
CCATTTCTTATCCCTACTAC+TGG 0.470967 3_1:+55228377 Msa0363090:CDS
CAGACTTGCTGTGGAGGCAT+GGG 0.471086 3_1:+55230896 Msa0363090:intron
GCCACAGTTAGAAAACTTCT+CGG 0.483622 3_1:+55229612 Msa0363090:CDS
GGCTTTCTGAGAACCAGTTA+TGG 0.484234 3_1:-55230269 None:intergenic
CTTCATCCATTCACAGCCTC+AGG 0.485436 3_1:+55227075 Msa0363090:five_prime_UTR
ATTGGGTTGTCTTGCTGGTG+TGG 0.485766 3_1:+55231832 Msa0363090:CDS
TCCAGGGCCGGTTAACATAC+CGG 0.489689 3_1:+55228235 Msa0363090:CDS
AACTGGTGTCACCAATAACT+TGG 0.495827 3_1:+55229590 Msa0363090:CDS
AAATTATCTAGAAAATCTAT+TGG 0.500274 3_1:-55232378 None:intergenic
AGAGTTTGAAATTTCAAGCA+AGG 0.501611 3_1:+55228167 Msa0363090:five_prime_UTR
CGATGTTGTGGAAAGTGAAT+GGG 0.504080 3_1:+55229473 Msa0363090:CDS
CCACCTCTTTGTTCCAGGGC+CGG 0.504114 3_1:+55228223 Msa0363090:CDS
ACTTCAGCACCGTCAATGTA+AGG 0.505077 3_1:-55230984 None:intergenic
AAATGTAGGGACAAGAAAGT+AGG 0.507102 3_1:+55226998 Msa0363090:five_prime_UTR
TCGATTTCCGTATGGACGAA+TGG 0.508249 3_1:+55230233 Msa0363090:CDS
CCATCAACAAGGAGGAGGGC+TGG 0.509981 3_1:-55230190 None:intergenic
ACAGACTTGCTGTGGAGGCA+TGG 0.510945 3_1:+55230895 Msa0363090:intron
AAAGCCCTTTCCCTTCCTAC+TGG 0.518469 3_1:+55230286 Msa0363090:CDS
CCTTCCATTCAGCTTCTCTA+CGG 0.520340 3_1:+55230436 Msa0363090:CDS
ATAGCACGAATGACCTGGTC+CGG 0.521295 3_1:-55228254 None:intergenic
TTATATAGGTGGTTCTTTGG+TGG 0.521588 3_1:+55228114 Msa0363090:intron
ACTAAACAAAGTTGCTGGAA+AGG 0.522582 3_1:+55231052 Msa0363090:CDS
TTGACAAACACATTGTCGCC+TGG 0.523761 3_1:+55229372 Msa0363090:CDS
TCGATGTTGTGGAAAGTGAA+TGG 0.525669 3_1:+55229472 Msa0363090:CDS
GAGTTTGAAATTTCAAGCAA+GGG 0.526677 3_1:+55228168 Msa0363090:five_prime_UTR
CAAGGAGGAGGGCTGGATGT+TGG 0.529269 3_1:-55230183 None:intergenic
CCGTAGAGAAGCTGAATGGA+AGG 0.533167 3_1:-55230436 None:intergenic
ATATCTTAAATAAACAGAAA+AGG 0.535241 3_1:-55231989 None:intergenic
CTACTCCCCATTCGTCCATA+CGG 0.535292 3_1:-55230240 None:intergenic
GCCGGTTAACATACCGGACC+AGG 0.546518 3_1:+55228241 Msa0363090:CDS
TCTACTACTTGGACAAGACT+TGG 0.547258 3_1:+55227119 Msa0363090:five_prime_UTR
TTGTGCTCTCGATTTCCGTA+TGG 0.548771 3_1:+55230225 Msa0363090:CDS
GAGCATCCTGAGGCTGTGAA+TGG 0.552731 3_1:-55227081 None:intergenic
CAAATCCAATACCAGTAGGA+AGG 0.557167 3_1:-55230297 None:intergenic
ATGCCAAGAGCATTTGGCAG+TGG 0.557775 3_1:+55227202 Msa0363090:five_prime_UTR
CTGAAGTTGTTAGAAGGGCA+TGG 0.559985 3_1:+55231000 Msa0363090:CDS
ATCGTTTAGGTACAGCTACC+AGG 0.563843 3_1:+55230521 Msa0363090:CDS
CTACCTGAAGTTCTACAAGA+TGG 0.564948 3_1:+55230393 Msa0363090:CDS
CGGTGCTGAAGTTGTTAGAA+GGG 0.565477 3_1:+55230995 Msa0363090:CDS
TGTCCAAGTAGTAGATAAGA+GGG 0.566128 3_1:-55227111 None:intergenic
TACCCAGTAAAATTGGGAAG+TGG 0.568031 3_1:+55231878 Msa0363090:CDS
CAATACCAGTAGGAAGGGAA+AGG 0.568672 3_1:-55230291 None:intergenic
AAGACCGTAGAGAAGCTGAA+TGG 0.571644 3_1:-55230440 None:intergenic
AAAGATACAATACGATCTCC+AGG 0.572618 3_1:-55229390 None:intergenic
GGACGAATGGGGAGTAGATG+TGG 0.573975 3_1:+55230246 Msa0363090:CDS
GTTCATAATGAGACTGCAAC+TGG 0.575174 3_1:+55229573 Msa0363090:CDS
GTTTGGTGAAGTATGGCAGA+AGG 0.575524 3_1:-55227238 None:intergenic
TACCTGAAGTTCTACAAGAT+GGG 0.576311 3_1:+55230394 Msa0363090:CDS
ATTGTTCTGTAAGTATGCAC+TGG 0.576598 3_1:-55231912 None:intergenic
AAATCCAATACCAGTAGGAA+GGG 0.577438 3_1:-55230296 None:intergenic
GACTTGACAATATTATTGCA+AGG 0.578019 3_1:+55230494 Msa0363090:CDS
AATACCAGTAGGAAGGGAAA+GGG 0.578211 3_1:-55230290 None:intergenic
GTGGAAAGTGAATGGGGCCG+TGG 0.578691 3_1:+55229480 Msa0363090:CDS
ATGGATTATGTTAATGGACC+AGG 0.579109 3_1:+55228194 Msa0363090:CDS
GGCTCATAGCACGAATGACC+TGG 0.583959 3_1:-55228259 None:intergenic
CAAATCCTTGAAGGAATGAG+AGG 0.585795 3_1:-55231938 None:intergenic
GAAACCACCTCTTTGTTCCA+GGG 0.597103 3_1:+55228219 Msa0363090:CDS
TCTGTGTGTGTAATTAGTCA+TGG 0.603223 3_1:+55232314 Msa0363090:three_prime_UTR
TGGTAAATACAGACTTGCTG+TGG 0.606808 3_1:+55230887 Msa0363090:intron
GTACAACAATACCAGTAGTA+GGG 0.606832 3_1:-55228388 None:intergenic
AGACTTGCTGTGGAGGCATG+GGG 0.607099 3_1:+55230897 Msa0363090:intron
ACACACCATCAACAAGGAGG+AGG 0.607370 3_1:-55230195 None:intergenic
GTCTTCAAGAGAGTTCAAAA+GGG 0.607588 3_1:-55232042 None:intergenic
TAAATACAGACTTGCTGTGG+AGG 0.610487 3_1:+55230890 Msa0363090:intron
CAAAGCACTCTCCCAAGCAC+CGG 0.620119 3_1:-55229352 None:intergenic
GAGGCTGTGAATGGATGAAG+TGG 0.621141 3_1:-55227072 None:intergenic
GATGAAGTGGAACATTTCAG+TGG 0.630228 3_1:-55227059 None:intergenic
CACACCATCAACAAGGAGGA+GGG 0.630438 3_1:-55230194 None:intergenic
GAGATGATACTCAGAGATGT+TGG 0.631831 3_1:+55231854 Msa0363090:CDS
ATTGCACACAAAAGGAAGAG+TGG 0.645383 3_1:+55230928 Msa0363090:CDS
TGGATGACACACCATCAACA+AGG 0.660307 3_1:-55230201 None:intergenic
TGCTATGAGCCGAAACAACG+AGG 0.669595 3_1:+55228271 Msa0363090:CDS
ATACTTCACCAAACTACCTG+AGG 0.670987 3_1:+55227247 Msa0363090:five_prime_UTR
CCGGCCCTGGAACAAAGAGG+TGG 0.671461 3_1:-55228223 None:intergenic
GATGTTGTGGAAAGTGAATG+GGG 0.673561 3_1:+55229474 Msa0363090:CDS
ACATCTTGGCAACTTGAACG+AGG 0.675450 3_1:+55231088 Msa0363090:CDS
TAACCGGCCCTGGAACAAAG+AGG 0.689828 3_1:-55228226 None:intergenic
GATTTCCGTATGGACGAATG+GGG 0.694111 3_1:+55230235 Msa0363090:CDS
GGGAGAAAATGAGCATCCTG+AGG 0.699460 3_1:-55227091 None:intergenic
ACCACAAATCCAATACCAGT+AGG 0.700818 3_1:-55230301 None:intergenic
TCAGCACCGTCAATGTAAGG+AGG 0.705659 3_1:-55230981 None:intergenic
GAATGTCGAGATCAGCACCA+CGG 0.723451 3_1:-55229497 None:intergenic
ATGACACACCATCAACAAGG+AGG 0.767226 3_1:-55230198 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAAAATTAGAAATAAATGT+AGG + chr3_1:55226984-55227003 Msa0363090:five_prime_UTR 10.0%
!! AAAAATTAGAAATAAATGTA+GGG + chr3_1:55226985-55227004 Msa0363090:five_prime_UTR 10.0%
!! ACTTTATAAAGTATAAAAAA+GGG - chr3_1:55227553-55227572 None:intergenic 10.0%
!! TACTTTATAAAGTATAAAAA+AGG - chr3_1:55227554-55227573 None:intergenic 10.0%
!!! ATAAACTATTTTTATAACAA+AGG - chr3_1:55228921-55228940 None:intergenic 10.0%
!!! ATATCCTTTTTATAAATTAT+TGG + chr3_1:55229900-55229919 Msa0363090:intron 10.0%
!!! AAAAAGAATCAGAAATTTTA+AGG - chr3_1:55227150-55227169 None:intergenic 15.0%
!! CTTTATAAAGTATAAAAAAG+GGG - chr3_1:55227552-55227571 None:intergenic 15.0%
!! AATGCCAATAATTTATAAAA+AGG - chr3_1:55229907-55229926 None:intergenic 15.0%
!! CAATAAAAATAAAGAAAAGA+TGG - chr3_1:55230115-55230134 None:intergenic 15.0%
!!! TTTTTTGCTAGATTTTTTTT+AGG - chr3_1:55230598-55230617 None:intergenic 15.0%
!!! AATAGTTGAAACTTTTTTTT+TGG + chr3_1:55230833-55230852 Msa0363090:intron 15.0%
!!! AATTTGAAGTTTAAAAATCA+AGG + chr3_1:55231370-55231389 Msa0363090:intron 15.0%
!! TTATAAATATTTACGTGTAT+TGG - chr3_1:55231428-55231447 None:intergenic 15.0%
!! ATATCTTAAATAAACAGAAA+AGG - chr3_1:55231992-55232011 None:intergenic 15.0%
!! AAATTATCTAGAAAATCTAT+TGG - chr3_1:55232381-55232400 None:intergenic 15.0%
!!! CAAAGCTTTTTTTTTTGTAT+AGG - chr3_1:55227347-55227366 None:intergenic 20.0%
!! CTATACAAAAAAAAAAGCTT+TGG + chr3_1:55227345-55227364 Msa0363090:intron 20.0%
!! GATACTACTAATACTAAAAT+TGG - chr3_1:55227595-55227614 None:intergenic 20.0%
!! TCATGAAACAGTAAATATAT+TGG - chr3_1:55227672-55227691 None:intergenic 20.0%
!!! CTTTGTGATGTATTTTATAT+AGG + chr3_1:55228100-55228119 Msa0363090:intron 20.0%
!!! TTGAACAATTTGATTTATCA+AGG - chr3_1:55228415-55228434 None:intergenic 20.0%
!! TCGAATAATTCAATACAAAT+AGG - chr3_1:55228721-55228740 None:intergenic 20.0%
!!! AATATTTTCATAAGCTATCT+TGG - chr3_1:55228848-55228867 None:intergenic 20.0%
!!! ATTATTTTCATAAGCTATCT+TGG - chr3_1:55228883-55228902 None:intergenic 20.0%
!! CTAAGTCATCAATTTAATTA+AGG - chr3_1:55229073-55229092 None:intergenic 20.0%
!!! TGTTTTATTTTGCATGTATT+TGG + chr3_1:55229211-55229230 Msa0363090:intron 20.0%
!!! ATTTACGTTTTATCTTTATC+AGG + chr3_1:55229279-55229298 Msa0363090:intron 20.0%
!! TAGTTTCAGAAATATTACTT+AGG + chr3_1:55229789-55229808 Msa0363090:intron 20.0%
!!! TCAAAACAAAATTTTGTTTG+TGG - chr3_1:55230020-55230039 None:intergenic 20.0%
!!! TTTTTATTGTCTCTATGAAA+TGG + chr3_1:55230126-55230145 Msa0363090:intron 20.0%
!!! AGTTTGTTCAAATTTTTCTA+CGG - chr3_1:55230779-55230798 None:intergenic 20.0%
!! TTGATGTTAACTATATGTAT+CGG - chr3_1:55231190-55231209 None:intergenic 20.0%
!! AAGAGAGAAAGAAAAAAAAA+GGG - chr3_1:55231671-55231690 None:intergenic 20.0%
!! AAAGAGAGAAAGAAAAAAAA+AGG - chr3_1:55231672-55231691 None:intergenic 20.0%
!!! TCTCTTTTTGAAATACTTAT+TGG + chr3_1:55231685-55231704 Msa0363090:intron 20.0%
!! TAAAGAATTAGCAATTTCAA+TGG - chr3_1:55231791-55231810 None:intergenic 20.0%
!!! TCTATAAAAGTGTCAAATAA+AGG - chr3_1:55232148-55232167 None:intergenic 20.0%
!!! AGAATCAGAAATTTTAAGGT+GGG - chr3_1:55227146-55227165 None:intergenic 25.0%
!!! AAGAATCAGAAATTTTAAGG+TGG - chr3_1:55227147-55227166 None:intergenic 25.0%
! ATTAGTAGTATCTCTCATAT+AGG + chr3_1:55227603-55227622 Msa0363090:intron 25.0%
!!! TTGTAGTTTTTTTTAGCAAG+TGG + chr3_1:55227765-55227784 Msa0363090:intron 25.0%
! ATAGTTGTTCTATTATTCCA+TGG - chr3_1:55228025-55228044 None:intergenic 25.0%
!! TGTGATGTATTTTATATAGG+TGG + chr3_1:55228103-55228122 Msa0363090:intron 25.0%
!! ATTTTATATAGGTGGTTCTT+TGG + chr3_1:55228111-55228130 Msa0363090:intron 25.0%
! ATTAAGCTGAAAACAACTTA+TGG - chr3_1:55228535-55228554 None:intergenic 25.0%
! TTAAGTTCTTTATCGAAAGA+CGG + chr3_1:55228691-55228710 Msa0363090:intron 25.0%
! AATAAACTGAAAACAGCTTA+TGG - chr3_1:55228813-55228832 None:intergenic 25.0%
! CCAAAAGTGAATGAAATATA+TGG - chr3_1:55229150-55229169 None:intergenic 25.0%
!! CCATATATTTCATTCACTTT+TGG + chr3_1:55229147-55229166 Msa0363090:intron 25.0%
!! GTATTAAATTGTGTGTGTTT+TGG + chr3_1:55229179-55229198 Msa0363090:intron 25.0%
!!! TTTATTTTGCATGTATTTGG+AGG + chr3_1:55229214-55229233 Msa0363090:intron 25.0%
! ATTTGGAGGTTACAAAATAA+TGG + chr3_1:55229228-55229247 Msa0363090:intron 25.0%
!! GTTTTATCTTTATCAGGATA+TGG + chr3_1:55229285-55229304 Msa0363090:intron 25.0%
!! TGTAATAACGTTTTTGCATT+TGG + chr3_1:55229321-55229340 Msa0363090:intron 25.0%
! CAACATCGACATTAAATTTA+AGG - chr3_1:55229461-55229480 None:intergenic 25.0%
! TAAATTTAATGTCGATGTTG+TGG + chr3_1:55229461-55229480 Msa0363090:CDS 25.0%
! AACAAAAGTAATATTTGCGA+AGG - chr3_1:55229753-55229772 None:intergenic 25.0%
! TTTCAGAAATATTACTTAGG+TGG + chr3_1:55229792-55229811 Msa0363090:intron 25.0%
! TTACATATCTCGATAATCAT+TGG - chr3_1:55230047-55230066 None:intergenic 25.0%
! TTGTACTAAATATTGTATCG+TGG - chr3_1:55230738-55230757 None:intergenic 25.0%
! AAAAGATACAATTTGAGCTT+AGG + chr3_1:55231023-55231042 Msa0363090:CDS 25.0%
!!! ATTGTTTTGGCTTAACTTTT+AGG + chr3_1:55231304-55231323 Msa0363090:intron 25.0%
!!! TTGTTTTGGCTTAACTTTTA+GGG + chr3_1:55231305-55231324 Msa0363090:intron 25.0%
!! ATATGTTCAAGTTATACTTG+TGG + chr3_1:55231336-55231355 Msa0363090:intron 25.0%
!! AACTTGTTCTTAATTCTTCT+TGG + chr3_1:55231532-55231551 Msa0363090:intron 25.0%
!!! AGGACAAAAAGTACTTTTAA+AGG - chr3_1:55231568-55231587 None:intergenic 25.0%
!!! TAACATTGTACTTTTGAAGT+AGG - chr3_1:55231588-55231607 None:intergenic 25.0%
!!! TTTTTTCAGTTGCAACTATT+GGG + chr3_1:55231815-55231834 Msa0363090:intron 25.0%
! TTCTCTTGCAACAAATATTA+GGG + chr3_1:55232218-55232237 Msa0363090:three_prime_UTR 25.0%
!!! GAATCAGAAATTTTAAGGTG+GGG - chr3_1:55227145-55227164 None:intergenic 30.0%
ACAAGATTAACACATGCAAA+AGG - chr3_1:55227401-55227420 None:intergenic 30.0%
! GTTTTTATGACTTCCACTTT+TGG + chr3_1:55227437-55227456 Msa0363090:intron 30.0%
! ACAACAAAGATTGAGTGTTT+TGG - chr3_1:55227476-55227495 None:intergenic 30.0%
TAAAGTATAAAAAAGGGGTG+AGG - chr3_1:55227547-55227566 None:intergenic 30.0%
! AGGATATAGTCTGAACTTTT+TGG + chr3_1:55227623-55227642 Msa0363090:intron 30.0%
AAAAAAACTACAAGTAGCTG+AGG - chr3_1:55227758-55227777 None:intergenic 30.0%
! TCAGTCACAAATTTTTACCA+TGG + chr3_1:55227846-55227865 Msa0363090:intron 30.0%
ACATGATTCAGTGTAATCAT+AGG - chr3_1:55227926-55227945 None:intergenic 30.0%
TCTCAAATTATTATCCGTGT+CGG + chr3_1:55227951-55227970 Msa0363090:intron 30.0%
! AGAGTTTGAAATTTCAAGCA+AGG + chr3_1:55228167-55228186 Msa0363090:five_prime_UTR 30.0%
! GAGTTTGAAATTTCAAGCAA+GGG + chr3_1:55228168-55228187 Msa0363090:five_prime_UTR 30.0%
!! AAGATTTTCAAGACTACTAC+TGG + chr3_1:55228350-55228369 Msa0363090:CDS 30.0%
TAAGTTCTTTATCGAAAGAC+GGG + chr3_1:55228692-55228711 Msa0363090:intron 30.0%
! AGTCTAATTGATTCTCTGTT+TGG - chr3_1:55229000-55229019 None:intergenic 30.0%
GAAATATTACTTAGGTGGTA+AGG + chr3_1:55229797-55229816 Msa0363090:intron 30.0%
! ATAAGTATGCATCTGAAACT+TGG + chr3_1:55229946-55229965 Msa0363090:intron 30.0%
AAAGAAAACTCGAAGTGATT+TGG - chr3_1:55230362-55230381 None:intergenic 30.0%
GACTTGACAATATTATTGCA+AGG + chr3_1:55230494-55230513 Msa0363090:CDS 30.0%
GTTAAGTCAATGAATCTGAT+AGG + chr3_1:55230855-55230874 Msa0363090:intron 30.0%
TTTGAAGAATTGCACACAAA+AGG + chr3_1:55230920-55230939 Msa0363090:CDS 30.0%
ATACAATTTGAGCTTAGGTT+TGG + chr3_1:55231028-55231047 Msa0363090:CDS 30.0%
TACAATTTGAGCTTAGGTTT+GGG + chr3_1:55231029-55231048 Msa0363090:CDS 30.0%
ATGTTAACTATATGTATCGG+TGG - chr3_1:55231187-55231206 None:intergenic 30.0%
! TGTGACAAAACACATTGTTT+TGG + chr3_1:55231291-55231310 Msa0363090:intron 30.0%
AAAATCAAGGTTCATGTCAA+TGG + chr3_1:55231383-55231402 Msa0363090:intron 30.0%
GCATTATGAGAATAACATCA+AGG + chr3_1:55231756-55231775 Msa0363090:intron 30.0%
AGAATTAGCAATTTCAATGG+TGG - chr3_1:55231788-55231807 None:intergenic 30.0%
!!! GTTTTTTCAGTTGCAACTAT+TGG + chr3_1:55231814-55231833 Msa0363090:intron 30.0%
TAAGTCCTTGAAGAAGAATT+TGG - chr3_1:55232173-55232192 None:intergenic 30.0%
CTTCTCTTGCAACAAATATT+AGG + chr3_1:55232217-55232236 Msa0363090:three_prime_UTR 30.0%
AAATGTAGGGACAAGAAAGT+AGG + chr3_1:55226998-55227017 Msa0363090:five_prime_UTR 35.0%
TGTCCAAGTAGTAGATAAGA+GGG - chr3_1:55227114-55227133 None:intergenic 35.0%
TTGTCCAAGTAGTAGATAAG+AGG - chr3_1:55227115-55227134 None:intergenic 35.0%
!! AAAGTTATGCCAAGAGCATT+TGG + chr3_1:55227196-55227215 Msa0363090:five_prime_UTR 35.0%
TTCATTAGCATGACCAAAAG+TGG - chr3_1:55227453-55227472 None:intergenic 35.0%
AATTGGAACTGATGCTGAAT+TGG - chr3_1:55227578-55227597 None:intergenic 35.0%
TTATATAGGTGGTTCTTTGG+TGG + chr3_1:55228114-55228133 Msa0363090:intron 35.0%
TATATAGGTGGTTCTTTGGT+GGG + chr3_1:55228115-55228134 Msa0363090:intron 35.0%
AAATTTCAAGCAAGGGAAGA+TGG + chr3_1:55228175-55228194 Msa0363090:exon 35.0%
!! GGGAAGATGGATTATGTTAA+TGG + chr3_1:55228188-55228207 Msa0363090:exon 35.0%
! ATGGATTATGTTAATGGACC+AGG + chr3_1:55228194-55228213 Msa0363090:CDS 35.0%
TCTCACAAAAACTCTACTTG+AGG + chr3_1:55228319-55228338 Msa0363090:CDS 35.0%
GTACAACAATACCAGTAGTA+GGG - chr3_1:55228391-55228410 None:intergenic 35.0%
CTACTAACATAAGCACTTGT+TGG + chr3_1:55228470-55228489 Msa0363090:intron 35.0%
CTTAATTCCATAATCTCTCC+AGG + chr3_1:55228549-55228568 Msa0363090:intron 35.0%
AAGTTCTTTATCGAAAGACG+GGG + chr3_1:55228693-55228712 Msa0363090:intron 35.0%
CAGAGAATCAATTAGACTAC+TGG + chr3_1:55229002-55229021 Msa0363090:intron 35.0%
ACAAAATAATGGCCTGAGAT+TGG + chr3_1:55229239-55229258 Msa0363090:intron 35.0%
!! AACGTTTTTGCATTTGGTTC+AGG + chr3_1:55229327-55229346 Msa0363090:intron 35.0%
AAAGATACAATACGATCTCC+AGG - chr3_1:55229393-55229412 None:intergenic 35.0%
CGTATTGTATCTTTCGTGAT+TGG + chr3_1:55229399-55229418 Msa0363090:CDS 35.0%
TGATTCTGCACACACTATAA+AGG + chr3_1:55229539-55229558 Msa0363090:CDS 35.0%
! GGATAGAGAATCAGATTTTG+TGG - chr3_1:55229666-55229685 None:intergenic 35.0%
ATCAAGAAATCAACATGCGA+AGG - chr3_1:55229844-55229863 None:intergenic 35.0%
TTCACTTGCAACGTCATAAT+TGG + chr3_1:55229985-55230004 Msa0363090:intron 35.0%
AAATCCAATACCAGTAGGAA+GGG - chr3_1:55230299-55230318 None:intergenic 35.0%
! TTGAAGCTTCAATGGCTTTA+GGG - chr3_1:55230333-55230352 None:intergenic 35.0%
! TTTGAAGCTTCAATGGCTTT+AGG - chr3_1:55230334-55230353 None:intergenic 35.0%
!! CACTTCGAGTTTTCTTTGAT+TGG + chr3_1:55230365-55230384 Msa0363090:CDS 35.0%
TACCTGAAGTTCTACAAGAT+GGG + chr3_1:55230394-55230413 Msa0363090:CDS 35.0%
TCTACAAGATGGGAACTTAT+TGG + chr3_1:55230404-55230423 Msa0363090:CDS 35.0%
! AGCTCTTGATCTGATTTTTG+AGG + chr3_1:55230468-55230487 Msa0363090:CDS 35.0%
!! CTTGATCTGATTTTTGAGGA+AGG + chr3_1:55230472-55230491 Msa0363090:CDS 35.0%
CACACAAATTATGTCTTACC+TGG - chr3_1:55230542-55230561 None:intergenic 35.0%
!! TTTAGTACAAAGCGTTGTAG+AGG + chr3_1:55230748-55230767 Msa0363090:intron 35.0%
AAGTCAATGAATCTGATAGG+TGG + chr3_1:55230858-55230877 Msa0363090:intron 35.0%
AATCTGATAGGTGGTCAATA+TGG + chr3_1:55230867-55230886 Msa0363090:intron 35.0%
ACTAAACAAAGTTGCTGGAA+AGG + chr3_1:55231052-55231071 Msa0363090:CDS 35.0%
! GTTTTCAGAATTGGACATCT+TGG + chr3_1:55231074-55231093 Msa0363090:CDS 35.0%
CACATAGCTATCAAGAGTTT+AGG - chr3_1:55231126-55231145 None:intergenic 35.0%
! CTAAACTCTTGATAGCTATG+TGG + chr3_1:55231124-55231143 Msa0363090:intron 35.0%
! TTAACTATATGTATCGGTGG+CGG - chr3_1:55231184-55231203 None:intergenic 35.0%
TGAATCGTTCTTTCTCTCTA+TGG + chr3_1:55231484-55231503 Msa0363090:intron 35.0%
GTTCTTTCTCTCTATGGTAA+GGG + chr3_1:55231490-55231509 Msa0363090:intron 35.0%
! TGTTGGTTACCCAGTAAAAT+TGG + chr3_1:55231871-55231890 Msa0363090:CDS 35.0%
GTTGGTTACCCAGTAAAATT+GGG + chr3_1:55231872-55231891 Msa0363090:CDS 35.0%
ATTGTTCTGTAAGTATGCAC+TGG - chr3_1:55231915-55231934 None:intergenic 35.0%
ATATTCCTCTCATTCCTTCA+AGG + chr3_1:55231933-55231952 Msa0363090:CDS 35.0%
CATGTAACTCAAATCCTTGA+AGG - chr3_1:55231950-55231969 None:intergenic 35.0%
! CTTCAAGGATTTGAGTTACA+TGG + chr3_1:55231948-55231967 Msa0363090:exon 35.0%
GTCTTCAAGAGAGTTCAAAA+GGG - chr3_1:55232045-55232064 None:intergenic 35.0%
AGAGACCAAATTCTTCTTCA+AGG + chr3_1:55232165-55232184 Msa0363090:three_prime_UTR 35.0%
!! CTTCAAGGACTTAGTCTTAT+AGG + chr3_1:55232180-55232199 Msa0363090:three_prime_UTR 35.0%
TCTGTGTGTGTAATTAGTCA+TGG + chr3_1:55232314-55232333 Msa0363090:three_prime_UTR 35.0%
GATGAAGTGGAACATTTCAG+TGG - chr3_1:55227062-55227081 None:intergenic 40.0%
TCTCCCTCTTATCTACTACT+TGG + chr3_1:55227108-55227127 Msa0363090:five_prime_UTR 40.0%
TCTACTACTTGGACAAGACT+TGG + chr3_1:55227119-55227138 Msa0363090:five_prime_UTR 40.0%
! TCAGGTAGTTTGGTGAAGTA+TGG - chr3_1:55227248-55227267 None:intergenic 40.0%
ATACTTCACCAAACTACCTG+AGG + chr3_1:55227247-55227266 Msa0363090:five_prime_UTR 40.0%
AAAGTAAGTGAGTGTACCTC+AGG - chr3_1:55227266-55227285 None:intergenic 40.0%
TACCATGGAACTATGAAGCA+CGG + chr3_1:55227861-55227880 Msa0363090:intron 40.0%
GTGTATGTGCTTCATAACCA+TGG + chr3_1:55228005-55228024 Msa0363090:intron 40.0%
AACGATAGTCCTCGTTGTTT+CGG - chr3_1:55228283-55228302 None:intergenic 40.0%
! AGTAGAGTTTTTGTGAGAGC+TGG - chr3_1:55228317-55228336 None:intergenic 40.0%
CCAGTAGTAGGGATAAGAAA+TGG - chr3_1:55228380-55228399 None:intergenic 40.0%
CCATTTCTTATCCCTACTAC+TGG + chr3_1:55228377-55228396 Msa0363090:CDS 40.0%
CGTACAACAATACCAGTAGT+AGG - chr3_1:55228392-55228411 None:intergenic 40.0%
AAGCTATCCTGGAGAGATTA+TGG - chr3_1:55228559-55228578 None:intergenic 40.0%
AATCTCTCCAGGATAGCTTA+TGG + chr3_1:55228560-55228579 Msa0363090:intron 40.0%
ACTCTTTCCATAAGCTATCC+TGG - chr3_1:55228570-55228589 None:intergenic 40.0%
AGTTCTTTATCGAAAGACGG+GGG + chr3_1:55228694-55228713 Msa0363090:intron 40.0%
GAGCATCATCCTGATTACTA+AGG - chr3_1:55229032-55229051 None:intergenic 40.0%
! TTTGCATTTGGTTCAGGTAC+CGG + chr3_1:55229333-55229352 Msa0363090:intron 40.0%
! TTGGCCAATTCAGTTTGCTT+TGG + chr3_1:55229418-55229437 Msa0363090:CDS 40.0%
! TGGCCAATTCAGTTTGCTTT+GGG + chr3_1:55229419-55229438 Msa0363090:CDS 40.0%
CAACCCAAAGCAAACTGAAT+TGG - chr3_1:55229425-55229444 None:intergenic 40.0%
TCGATGTTGTGGAAAGTGAA+TGG + chr3_1:55229472-55229491 Msa0363090:CDS 40.0%
CGATGTTGTGGAAAGTGAAT+GGG + chr3_1:55229473-55229492 Msa0363090:CDS 40.0%
GATGTTGTGGAAAGTGAATG+GGG + chr3_1:55229474-55229493 Msa0363090:CDS 40.0%
GTTCATAATGAGACTGCAAC+TGG + chr3_1:55229573-55229592 Msa0363090:CDS 40.0%
!! AACTGGTGTCACCAATAACT+TGG + chr3_1:55229590-55229609 Msa0363090:CDS 40.0%
TCTAACTGTGGCCAAGTTAT+TGG - chr3_1:55229604-55229623 None:intergenic 40.0%
GCCACAGTTAGAAAACTTCT+CGG + chr3_1:55229612-55229631 Msa0363090:CDS 40.0%
! ACCGAGAAGTTTTCTAACTG+TGG - chr3_1:55229616-55229635 None:intergenic 40.0%
ATGTGTGTACAATGACAGCT+TGG - chr3_1:55229687-55229706 None:intergenic 40.0%
CTCCTAGTTTCACTGTTCAA+TGG + chr3_1:55229708-55229727 Msa0363090:intron 40.0%
GACCATTGAACAGTGAAACT+AGG - chr3_1:55229713-55229732 None:intergenic 40.0%
ATGGCACTCACATTGTAGTT+TGG + chr3_1:55230145-55230164 Msa0363090:intron 40.0%
AATACCAGTAGGAAGGGAAA+GGG - chr3_1:55230293-55230312 None:intergenic 40.0%
CAAATCCAATACCAGTAGGA+AGG - chr3_1:55230300-55230319 None:intergenic 40.0%
! TCCTACTGGTATTGGATTTG+TGG + chr3_1:55230300-55230319 Msa0363090:CDS 40.0%
ACCACAAATCCAATACCAGT+AGG - chr3_1:55230304-55230323 None:intergenic 40.0%
!!! GGCAGATTTTGAAGCTTCAA+TGG - chr3_1:55230341-55230360 None:intergenic 40.0%
CTACCTGAAGTTCTACAAGA+TGG + chr3_1:55230393-55230412 Msa0363090:CDS 40.0%
TTCCCATCTTGTAGAACTTC+AGG - chr3_1:55230399-55230418 None:intergenic 40.0%
ATTGCAAGGCACAATCGTTT+AGG + chr3_1:55230508-55230527 Msa0363090:CDS 40.0%
!! TGGTAAATACAGACTTGCTG+TGG + chr3_1:55230887-55230906 Msa0363090:intron 40.0%
!! TAAATACAGACTTGCTGTGG+AGG + chr3_1:55230890-55230909 Msa0363090:intron 40.0%
ATTGCACACAAAAGGAAGAG+TGG + chr3_1:55230928-55230947 Msa0363090:CDS 40.0%
GTTGTTCCTCCTTACATTGA+CGG + chr3_1:55230975-55230994 Msa0363090:CDS 40.0%
TTGGGACTAAACAAAGTTGC+TGG + chr3_1:55231047-55231066 Msa0363090:CDS 40.0%
! GCTGGAAAGGTTTTCAGAAT+TGG + chr3_1:55231065-55231084 Msa0363090:CDS 40.0%
GGCTCCAATTTCATCTATCA+GGG - chr3_1:55231150-55231169 None:intergenic 40.0%
CGTTCTTTCTCTCTATGGTA+AGG + chr3_1:55231489-55231508 Msa0363090:intron 40.0%
GTCATTGTCGAGTAAGATAC+TGG - chr3_1:55231627-55231646 None:intergenic 40.0%
TAACGTGTTAATGTCGTGTC+TGG + chr3_1:55231711-55231730 Msa0363090:intron 40.0%
TGTCAGTGTCTGTACTTCAA+AGG + chr3_1:55231734-55231753 Msa0363090:intron 40.0%
GAGATGATACTCAGAGATGT+TGG + chr3_1:55231854-55231873 Msa0363090:CDS 40.0%
TACCCAGTAAAATTGGGAAG+TGG + chr3_1:55231878-55231897 Msa0363090:CDS 40.0%
! CTCCACTTCCCAATTTTACT+GGG - chr3_1:55231883-55231902 None:intergenic 40.0%
! ACTCCACTTCCCAATTTTAC+TGG - chr3_1:55231884-55231903 None:intergenic 40.0%
CAAATCCTTGAAGGAATGAG+AGG - chr3_1:55231941-55231960 None:intergenic 40.0%
CGTCTTCAAGAGAGTTCAAA+AGG - chr3_1:55232046-55232065 None:intergenic 40.0%
GGGACAAGAAAGTAGGAGAA+TGG + chr3_1:55227005-55227024 Msa0363090:five_prime_UTR 45.0%
! GTTTGGTGAAGTATGGCAGA+AGG - chr3_1:55227241-55227260 None:intergenic 45.0%
TGAGTGTACCTCAGGTAGTT+TGG - chr3_1:55227258-55227277 None:intergenic 45.0%
TGTCGAACACACCTAATTCG+AGG - chr3_1:55227892-55227911 None:intergenic 45.0%
! TGTAATCATAGGCGTCGTGT+CGG - chr3_1:55227915-55227934 None:intergenic 45.0%
! TATTATCCGTGTCGGCGTAT+CGG + chr3_1:55227959-55227978 Msa0363090:intron 45.0%
TGAAGCACATACACTGACAC+TGG - chr3_1:55227999-55228018 None:intergenic 45.0%
ACAAAGAGGTGGTTTCTTCC+TGG - chr3_1:55228215-55228234 None:intergenic 45.0%
AGAAACCACCTCTTTGTTCC+AGG + chr3_1:55228218-55228237 Msa0363090:CDS 45.0%
GAAACCACCTCTTTGTTCCA+GGG + chr3_1:55228219-55228238 Msa0363090:CDS 45.0%
TTTGTGAGAGCTGGAATTGC+AGG - chr3_1:55228308-55228327 None:intergenic 45.0%
GGACTGTTTGACAGAGCTTA+TGG + chr3_1:55228491-55228510 Msa0363090:intron 45.0%
ACTGGACTGCCTTAGTAATC+AGG + chr3_1:55229020-55229039 Msa0363090:intron 45.0%
TTGACAAACACATTGTCGCC+TGG + chr3_1:55229372-55229391 Msa0363090:CDS 45.0%
CTTAGGTGGTAAGGTTCTGT+TGG + chr3_1:55229806-55229825 Msa0363090:intron 45.0%
ATGACACACCATCAACAAGG+AGG - chr3_1:55230201-55230220 None:intergenic 45.0%
TGGATGACACACCATCAACA+AGG - chr3_1:55230204-55230223 None:intergenic 45.0%
! ACGGAAATCGAGAGCACAAA+TGG - chr3_1:55230224-55230243 None:intergenic 45.0%
TTGTGCTCTCGATTTCCGTA+TGG + chr3_1:55230225-55230244 Msa0363090:CDS 45.0%
TCGATTTCCGTATGGACGAA+TGG + chr3_1:55230233-55230252 Msa0363090:CDS 45.0%
CGATTTCCGTATGGACGAAT+GGG + chr3_1:55230234-55230253 Msa0363090:CDS 45.0%
GATTTCCGTATGGACGAATG+GGG + chr3_1:55230235-55230254 Msa0363090:CDS 45.0%
! GGCTTTCTGAGAACCAGTTA+TGG - chr3_1:55230272-55230291 None:intergenic 45.0%
CAATACCAGTAGGAAGGGAA+AGG - chr3_1:55230294-55230313 None:intergenic 45.0%
CTTTCCCTTCCTACTGGTAT+TGG + chr3_1:55230292-55230311 Msa0363090:CDS 45.0%
! AGCTGAATGGAAGGAGTGTA+TGG - chr3_1:55230430-55230449 None:intergenic 45.0%
CCTTCCATTCAGCTTCTCTA+CGG + chr3_1:55230436-55230455 Msa0363090:CDS 45.0%
AAGACCGTAGAGAAGCTGAA+TGG - chr3_1:55230443-55230462 None:intergenic 45.0%
ATCGTTTAGGTACAGCTACC+AGG + chr3_1:55230521-55230540 Msa0363090:CDS 45.0%
ACTTCAGCACCGTCAATGTA+AGG - chr3_1:55230987-55231006 None:intergenic 45.0%
! ACGGTGCTGAAGTTGTTAGA+AGG + chr3_1:55230994-55231013 Msa0363090:CDS 45.0%
! CGGTGCTGAAGTTGTTAGAA+GGG + chr3_1:55230995-55231014 Msa0363090:CDS 45.0%
CTGAAGTTGTTAGAAGGGCA+TGG + chr3_1:55231000-55231019 Msa0363090:CDS 45.0%
ACATCTTGGCAACTTGAACG+AGG + chr3_1:55231088-55231107 Msa0363090:CDS 45.0%
GTGGCCCTGATAGATGAAAT+TGG + chr3_1:55231143-55231162 Msa0363090:intron 45.0%
CGGCTCCAATTTCATCTATC+AGG - chr3_1:55231151-55231170 None:intergenic 45.0%
GATGAAATTGGAGCCGTATC+CGG + chr3_1:55231155-55231174 Msa0363090:intron 45.0%
! CAACTATTGGGTTGTCTTGC+TGG + chr3_1:55231827-55231846 Msa0363090:CDS 45.0%
GAGGCTGTGAATGGATGAAG+TGG - chr3_1:55227075-55227094 None:intergenic 50.0%
CTTCATCCATTCACAGCCTC+AGG + chr3_1:55227075-55227094 Msa0363090:five_prime_UTR 50.0%
GGGAGAAAATGAGCATCCTG+AGG - chr3_1:55227094-55227113 None:intergenic 50.0%
!! ATGCCAAGAGCATTTGGCAG+TGG + chr3_1:55227202-55227221 Msa0363090:five_prime_UTR 50.0%
GTCCGTGCTTCATAGTTCCA+TGG - chr3_1:55227866-55227885 None:intergenic 50.0%
ACCTGGTCCGGTATGTTAAC+CGG - chr3_1:55228245-55228264 None:intergenic 50.0%
ATAGCACGAATGACCTGGTC+CGG - chr3_1:55228257-55228276 None:intergenic 50.0%
TGCTATGAGCCGAAACAACG+AGG + chr3_1:55228271-55228290 Msa0363090:CDS 50.0%
GCTCTTGCTGAACCAATCTC+AGG - chr3_1:55229254-55229273 None:intergenic 50.0%
GAATGTCGAGATCAGCACCA+CGG - chr3_1:55229500-55229519 None:intergenic 50.0%
CACACCATCAACAAGGAGGA+GGG - chr3_1:55230197-55230216 None:intergenic 50.0%
ACACACCATCAACAAGGAGG+AGG - chr3_1:55230198-55230217 None:intergenic 50.0%
CTACTCCCCATTCGTCCATA+CGG - chr3_1:55230243-55230262 None:intergenic 50.0%
GGAGTAGATGTGGCCATAAC+TGG + chr3_1:55230256-55230275 Msa0363090:CDS 50.0%
AAAGCCCTTTCCCTTCCTAC+TGG + chr3_1:55230286-55230305 Msa0363090:CDS 50.0%
CCGTAGAGAAGCTGAATGGA+AGG - chr3_1:55230439-55230458 None:intergenic 50.0%
TCAGCACCGTCAATGTAAGG+AGG - chr3_1:55230984-55231003 None:intergenic 50.0%
TACGTCACAGCGTTGTGTCA+GGG + chr3_1:55231230-55231249 Msa0363090:intron 50.0%
! ATTGGGTTGTCTTGCTGGTG+TGG + chr3_1:55231832-55231851 Msa0363090:CDS 50.0%
GAGCATCCTGAGGCTGTGAA+TGG - chr3_1:55227084-55227103 None:intergenic 55.0%
CTGCCACTGCCAAATGCTCT+TGG - chr3_1:55227208-55227227 None:intergenic 55.0%
CAGATACCGATACGCCGACA+CGG - chr3_1:55227968-55227987 None:intergenic 55.0%
TAACCGGCCCTGGAACAAAG+AGG - chr3_1:55228229-55228248 None:intergenic 55.0%
TCCAGGGCCGGTTAACATAC+CGG + chr3_1:55228235-55228254 Msa0363090:CDS 55.0%
GGCTCATAGCACGAATGACC+TGG - chr3_1:55228262-55228281 None:intergenic 55.0%
!! TTGGTTCAGGTACCGGTGCT+TGG + chr3_1:55229340-55229359 Msa0363090:intron 55.0%
!! TGGTTCAGGTACCGGTGCTT+GGG + chr3_1:55229341-55229360 Msa0363090:intron 55.0%
! CAAAGCACTCTCCCAAGCAC+CGG - chr3_1:55229355-55229374 None:intergenic 55.0%
GGACGAATGGGGAGTAGATG+TGG + chr3_1:55230246-55230265 Msa0363090:CDS 55.0%
!! ACAGACTTGCTGTGGAGGCA+TGG + chr3_1:55230895-55230914 Msa0363090:intron 55.0%
!! CAGACTTGCTGTGGAGGCAT+GGG + chr3_1:55230896-55230915 Msa0363090:intron 55.0%
!! AGACTTGCTGTGGAGGCATG+GGG + chr3_1:55230897-55230916 Msa0363090:intron 55.0%
!! TATGTATCGGTGGCGGACAC+CGG - chr3_1:55231177-55231196 None:intergenic 55.0%
CTACGTCACAGCGTTGTGTC+AGG + chr3_1:55231229-55231248 Msa0363090:intron 55.0%
GCACGGACGCTCCTCGAATT+AGG + chr3_1:55227878-55227897 Msa0363090:intron 60.0%
CCACCTCTTTGTTCCAGGGC+CGG + chr3_1:55228223-55228242 Msa0363090:CDS 60.0%
TCCGGTATGTTAACCGGCCC+TGG - chr3_1:55228239-55228258 None:intergenic 60.0%
GCCGGTTAACATACCGGACC+AGG + chr3_1:55228241-55228260 Msa0363090:CDS 60.0%
GTGGAAAGTGAATGGGGCCG+TGG + chr3_1:55229480-55229499 Msa0363090:CDS 60.0%
CAAGGAGGAGGGCTGGATGT+TGG - chr3_1:55230186-55230205 None:intergenic 60.0%
CCATCAACAAGGAGGAGGGC+TGG - chr3_1:55230193-55230212 None:intergenic 60.0%
CCAGCCCTCCTCCTTGTTGA+TGG + chr3_1:55230190-55230209 Msa0363090:CDS 60.0%
CCGGCCCTGGAACAAAGAGG+TGG - chr3_1:55228226-55228245 None:intergenic 65.0%
!! TCGGTGGCGGACACCGGATA+CGG - chr3_1:55231171-55231190 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr3_1 gene 55226984 55232400 55226984 ID=Msa0363090;Name=Msa0363090
chr3_1 mRNA 55226984 55232400 55226984 ID=Msa0363090-mRNA-1;Parent=Msa0363090;Name=Msa0363090-mRNA-1;_AED=0.15;_eAED=0.15;_QI=357|1|1|1|0.6|0.66|6|439|401
chr3_1 exon 55226984 55227268 55226984 ID=Msa0363090-mRNA-1:exon:10052;Parent=Msa0363090-mRNA-1
chr3_1 exon 55228122 55228398 55228122 ID=Msa0363090-mRNA-1:exon:10053;Parent=Msa0363090-mRNA-1
chr3_1 exon 55229349 55229633 55229349 ID=Msa0363090-mRNA-1:exon:10054;Parent=Msa0363090-mRNA-1
chr3_1 exon 55230176 55230542 55230176 ID=Msa0363090-mRNA-1:exon:10055;Parent=Msa0363090-mRNA-1
chr3_1 exon 55230899 55231109 55230899 ID=Msa0363090-mRNA-1:exon:10056;Parent=Msa0363090-mRNA-1
chr3_1 exon 55231824 55232400 55231824 ID=Msa0363090-mRNA-1:exon:10057;Parent=Msa0363090-mRNA-1
chr3_1 five_prime_UTR 55226984 55227268 55226984 ID=Msa0363090-mRNA-1:five_prime_utr;Parent=Msa0363090-mRNA-1
chr3_1 five_prime_UTR 55228122 55228193 55228122 ID=Msa0363090-mRNA-1:five_prime_utr;Parent=Msa0363090-mRNA-1
chr3_1 CDS 55228194 55228398 55228194 ID=Msa0363090-mRNA-1:cds;Parent=Msa0363090-mRNA-1
chr3_1 CDS 55229349 55229633 55229349 ID=Msa0363090-mRNA-1:cds;Parent=Msa0363090-mRNA-1
chr3_1 CDS 55230176 55230542 55230176 ID=Msa0363090-mRNA-1:cds;Parent=Msa0363090-mRNA-1
chr3_1 CDS 55230899 55231109 55230899 ID=Msa0363090-mRNA-1:cds;Parent=Msa0363090-mRNA-1
chr3_1 CDS 55231824 55231961 55231824 ID=Msa0363090-mRNA-1:cds;Parent=Msa0363090-mRNA-1
chr3_1 three_prime_UTR 55231962 55232400 55231962 ID=Msa0363090-mRNA-1:three_prime_utr;Parent=Msa0363090-mRNA-1
Gene Sequence

>Msa0363090

ATGGATTATGTTAATGGACCAGGAAGAAACCACCTCTTTGTTCCAGGGCCGGTTAACATACCGGACCAGGTCATTCGTGCTATGAGCCGAAACAACGAGGACTATCGTTCTCCTGCAATTCCAGCTCTCACAAAAACTCTACTTGAGGATGTCAAGAAGATTTTCAAGACTACTACTGGAACTCCATTTCTTATCCCTACTACTGGTACCGGTGCTTGGGAGAGTGCTTTGACAAACACATTGTCGCCTGGAGATCGTATTGTATCTTTCGTGATTGGCCAATTCAGTTTGCTTTGGGTTGATCAGCAGCAACGCCTTAAATTTAATGTCGATGTTGTGGAAAGTGAATGGGGCCGTGGTGCTGATCTCGACATTCTAGAATCAAAACTTGCTTCTGATTCTGCACACACTATAAAGGCTATTTGCATTGTTCATAATGAGACTGCAACTGGTGTCACCAATAACTTGGCCACAGTTAGAAAACTTCTCGATGCATACCAACATCCAGCCCTCCTCCTTGTTGATGGTGTGTCATCCATTTGTGCTCTCGATTTCCGTATGGACGAATGGGGAGTAGATGTGGCCATAACTGGTTCTCAGAAAGCCCTTTCCCTTCCTACTGGTATTGGATTTGTGGTTGCAAGCCCTAAAGCCATTGAAGCTTCAAAATCTGCCAAATCACTTCGAGTTTTCTTTGATTGGAGCGACTACCTGAAGTTCTACAAGATGGGAACTTATTGGCCATACACTCCTTCCATTCAGCTTCTCTACGGTCTTAGAGCAGCTCTTGATCTGATTTTTGAGGAAGGACTTGACAATATTATTGCAAGGCACAATCGTTTAGGTACAGCTACCAGACTTGCTGTGGAGGCATGGGGTTTGAAGAATTGCACACAAAAGGAAGAGTGGTTCAGTGACACAGTGACTGCTGTTGTTGTTCCTCCTTACATTGACGGTGCTGAAGTTGTTAGAAGGGCATGGAAAAGATACAATTTGAGCTTAGGTTTGGGACTAAACAAAGTTGCTGGAAAGGTTTTCAGAATTGGACATCTTGGCAACTTGAACGAGTTGCAACTATTGGGTTGTCTTGCTGGTGTGGAGATGATACTCAGAGATGTTGGTTACCCAGTAAAATTGGGAAGTGGAGTTGCTGCTGCCAGTGCATACTTACAGAACAATATTCCTCTCATTCCTTCAAGGATTTGA

Protein sequence

>Msa0363090

MDYVNGPGRNHLFVPGPVNIPDQVIRAMSRNNEDYRSPAIPALTKTLLEDVKKIFKTTTGTPFLIPTTGTGAWESALTNTLSPGDRIVSFVIGQFSLLWVDQQQRLKFNVDVVESEWGRGADLDILESKLASDSAHTIKAICIVHNETATGVTNNLATVRKLLDAYQHPALLLVDGVSSICALDFRMDEWGVDVAITGSQKALSLPTGIGFVVASPKAIEASKSAKSLRVFFDWSDYLKFYKMGTYWPYTPSIQLLYGLRAALDLIFEEGLDNIIARHNRLGTATRLAVEAWGLKNCTQKEEWFSDTVTAVVVPPYIDGAEVVRRAWKRYNLSLGLGLNKVAGKVFRIGHLGNLNELQLLGCLAGVEMILRDVGYPVKLGSGVAAASAYLQNNIPLIPSRI*