AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0168360


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0168360 MtrunA17_Chr1g0184761 96.350 137 5 0 1 137 1 137 9.27e-93 264
Msa0168360 MtrunA17_Chr7g0260701 75.912 137 32 1 1 137 1 136 6.39e-66 196
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0168360 AT2G30570.1 62.319 138 46 4 1 137 1 133 1.86e-46 147

Find 48 sgRNAs with CRISPR-Local

Find 176 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTGGCGTGTTCGGTCTTATC+TGG 0.157920 1_4:+50905963 Msa0168360:CDS
GTTTCATCCTCTCCTGTTCT+TGG 0.207350 1_4:+50905050 Msa0168360:CDS
TCCACCAATGCCATGGCTGC+TGG 0.247914 1_4:-50905869 None:intergenic
GGACTCAGCAACAACCTTCT+TGG 0.296711 1_4:+50905929 Msa0168360:CDS
AATACTTAGTTTCAGTTGTC+TGG 0.319270 1_4:+50906172 Msa0168360:three_prime_UTR
CTTCCTACCTTAGCCATTGT+TGG 0.362196 1_4:-50905737 None:intergenic
TAAGACCGAACACGCCAAAA+AGG 0.385232 1_4:-50905958 None:intergenic
TTAGTAAGTGTGGATGATTA+TGG 0.401065 1_4:-50904939 None:intergenic
CCACCAATGCCATGGCTGCT+GGG 0.401839 1_4:-50905868 None:intergenic
CCCAGCAGCCATGGCATTGG+TGG 0.403670 1_4:+50905868 Msa0168360:CDS
ACTTCACTTAAACTAGTATC+TGG 0.410001 1_4:+50904874 Msa0168360:five_prime_UTR
AGGAAGAGTGAGGTGTTCAA+TGG 0.414580 1_4:+50905754 Msa0168360:CDS
TTGCTTTCATTCACAGAAGA+AGG 0.414981 1_4:-50905785 None:intergenic
GAAGGAACCGGGCTTCCCTT+TGG 0.425729 1_4:+50905908 Msa0168360:CDS
CTTGAAGAGGATGAAGAGTC+TGG 0.434178 1_4:+50906013 Msa0168360:CDS
AGAATGAGCACTGAAGGAAC+CGG 0.435090 1_4:+50905896 Msa0168360:CDS
TGGCGTGTTCGGTCTTATCT+GGG 0.435857 1_4:+50905964 Msa0168360:CDS
ACAAACAACATACCAAGAAC+AGG 0.443082 1_4:-50905062 None:intergenic
AAGCAACTCAAACATTAGAA+TGG 0.464632 1_4:+50905802 Msa0168360:CDS
GATACTAGTTTAAGTGAAGT+TGG 0.464655 1_4:-50904871 None:intergenic
CGAGAGTTTAAGAAAAGAAG+AGG 0.479750 1_4:-50906143 None:intergenic
AAGAGTGAGGTGTTCAATGG+AGG 0.482197 1_4:+50905757 Msa0168360:CDS
AGCAACTCAAACATTAGAAT+GGG 0.484436 1_4:+50905803 Msa0168360:CDS
AGTTGTAGTGGTTGCTGAGA+TGG 0.506917 1_4:-50904982 None:intergenic
AGAGTGAGGTGTTCAATGGA+GGG 0.518257 1_4:+50905758 Msa0168360:CDS
TCAGCAACAACCTTCTTGGA+TGG 0.521246 1_4:+50905933 Msa0168360:CDS
AAGCCCAGCAGCCATGGCAT+TGG 0.535185 1_4:+50905865 Msa0168360:CDS
GATAGATTGAAGCTCATGGT+TGG 0.546901 1_4:-50904799 None:intergenic
AAATTGTTTGAAATGAATCA+CGG 0.552027 1_4:+50906047 Msa0168360:exon
GAGACAGAAGAGAAGTAGCT+TGG 0.552653 1_4:+50904896 Msa0168360:five_prime_UTR
AAGGTTGTTGCTGAGTCCAA+AGG 0.556907 1_4:-50905924 None:intergenic
CTACGCTTCGAGTCTTGAAG+AGG 0.558378 1_4:+50906000 Msa0168360:CDS
TCTTTCATCCACCAATGCCA+TGG 0.558482 1_4:-50905876 None:intergenic
CAAGGATAGATTGAAGCTCA+TGG 0.568609 1_4:-50904803 None:intergenic
GCTGAGTCCAAAGGGAAGCC+CGG 0.571088 1_4:-50905915 None:intergenic
AGGATTGCCAACAATGGCTA+AGG 0.574193 1_4:+50905730 Msa0168360:intron
GATGTCAAGCCCAGCAGCCA+TGG 0.580210 1_4:+50905859 Msa0168360:CDS
AGGTTGTTGCTGAGTCCAAA+GGG 0.582023 1_4:-50905923 None:intergenic
GATGAAAGAATGAGCACTGA+AGG 0.583467 1_4:+50905890 Msa0168360:CDS
AGTCCATGCACCACAAAACA+AGG 0.587249 1_4:-50904821 None:intergenic
GAATGAGCACTGAAGGAACC+GGG 0.588005 1_4:+50905897 Msa0168360:CDS
TTATTCAGGATTGCCAACAA+TGG 0.611540 1_4:+50905724 Msa0168360:intron
TTGCCAACAATGGCTAAGGT+AGG 0.622185 1_4:+50905734 Msa0168360:CDS
AATTAATAATATCAGTGCAG+AGG 0.638910 1_4:-50904845 None:intergenic
CAACATACCAAGAACAGGAG+AGG 0.645270 1_4:-50905057 None:intergenic
GGTGATCGATGCAGTTGTAG+TGG 0.659864 1_4:-50904994 None:intergenic
TGGCTAAGGTAGGAAGAGTG+AGG 0.686087 1_4:+50905744 Msa0168360:CDS
GGAGAGGATGAAACTGCAAG+AGG 0.693611 1_4:-50905041 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TACTAAAACAAAAATTAAAA+TGG + chr1_4:50904956-50904975 Msa0168360:exon 10.0%
!! TACTAAAACAAAAATTAAAA+TGG + chr1_4:50904956-50904975 Msa0168360:exon 10.0%
!!! ATTTTTAGATTTTTTTTTCC+CGG + chr1_4:50905423-50905442 Msa0168360:intron 15.0%
!! CATGAAAAATCAATTAAAAA+TGG - chr1_4:50905665-50905684 None:intergenic 15.0%
!!! AACATTCAATTATTTTATTC+AGG + chr1_4:50905710-50905729 Msa0168360:intron 15.0%
!!! ATTTTTAGATTTTTTTTTCC+CGG + chr1_4:50905423-50905442 Msa0168360:intron 15.0%
!! CATGAAAAATCAATTAAAAA+TGG - chr1_4:50905665-50905684 None:intergenic 15.0%
!!! AACATTCAATTATTTTATTC+AGG + chr1_4:50905710-50905729 Msa0168360:intron 15.0%
!!! AATTTTTGTTTTAGTAAGTG+TGG - chr1_4:50904952-50904971 None:intergenic 20.0%
!!! AATATTTAGGATGAAAATCA+AGG - chr1_4:50905092-50905111 None:intergenic 20.0%
!! TATCATGCTATTCAATATTT+AGG - chr1_4:50905105-50905124 None:intergenic 20.0%
!! ATTTACTTACAATCCAATAA+TGG + chr1_4:50905148-50905167 Msa0168360:intron 20.0%
!!! AGATATATATGTTTTAAGAG+TGG + chr1_4:50905208-50905227 Msa0168360:intron 20.0%
!! TAACTAATGCATTCTATATT+GGG - chr1_4:50905236-50905255 None:intergenic 20.0%
!! TTGATATTTGATATTACGAT+AGG + chr1_4:50905264-50905283 Msa0168360:intron 20.0%
!!! TTTTTAGATTTTTTTTTCCC+GGG + chr1_4:50905424-50905443 Msa0168360:intron 20.0%
!!! AAATTGTTTGAAATGAATCA+CGG + chr1_4:50906047-50906066 Msa0168360:exon 20.0%
!!! AATTTTTGTTTTAGTAAGTG+TGG - chr1_4:50904952-50904971 None:intergenic 20.0%
!!! AATATTTAGGATGAAAATCA+AGG - chr1_4:50905092-50905111 None:intergenic 20.0%
!! TATCATGCTATTCAATATTT+AGG - chr1_4:50905105-50905124 None:intergenic 20.0%
!! ATTTACTTACAATCCAATAA+TGG + chr1_4:50905148-50905167 Msa0168360:intron 20.0%
!!! AGATATATATGTTTTAAGAG+TGG + chr1_4:50905208-50905227 Msa0168360:intron 20.0%
!! TAACTAATGCATTCTATATT+GGG - chr1_4:50905236-50905255 None:intergenic 20.0%
!! TTGATATTTGATATTACGAT+AGG + chr1_4:50905264-50905283 Msa0168360:intron 20.0%
!!! TTTTTAGATTTTTTTTTCCC+GGG + chr1_4:50905424-50905443 Msa0168360:intron 20.0%
!!! AAATTGTTTGAAATGAATCA+CGG + chr1_4:50906047-50906066 Msa0168360:exon 20.0%
! AATTAATAATATCAGTGCAG+AGG - chr1_4:50904848-50904867 None:intergenic 25.0%
!! TTCTCTAGAAAATCCATTAT+TGG - chr1_4:50905164-50905183 None:intergenic 25.0%
!!! GAATTTTATTTGTACTTCTG+TGG + chr1_4:50905181-50905200 Msa0168360:intron 25.0%
! CTAACTAATGCATTCTATAT+TGG - chr1_4:50905237-50905256 None:intergenic 25.0%
! ATCATTACAAAATCAAGAGA+CGG - chr1_4:50905395-50905414 None:intergenic 25.0%
! AATTAATAATATCAGTGCAG+AGG - chr1_4:50904848-50904867 None:intergenic 25.0%
!! TTCTCTAGAAAATCCATTAT+TGG - chr1_4:50905164-50905183 None:intergenic 25.0%
!!! GAATTTTATTTGTACTTCTG+TGG + chr1_4:50905181-50905200 Msa0168360:intron 25.0%
! CTAACTAATGCATTCTATAT+TGG - chr1_4:50905237-50905256 None:intergenic 25.0%
! ATCATTACAAAATCAAGAGA+CGG - chr1_4:50905395-50905414 None:intergenic 25.0%
!!! TTCAATCTATCCTTGTTTTG+TGG + chr1_4:50904811-50904830 Msa0168360:five_prime_UTR 30.0%
! GATACTAGTTTAAGTGAAGT+TGG - chr1_4:50904874-50904893 None:intergenic 30.0%
ACTTCACTTAAACTAGTATC+TGG + chr1_4:50904874-50904893 Msa0168360:five_prime_UTR 30.0%
TTAGTAAGTGTGGATGATTA+TGG - chr1_4:50904942-50904961 None:intergenic 30.0%
!!! GTTTTAAAACTTGAACCGAA+CGG + chr1_4:50905478-50905497 Msa0168360:intron 30.0%
AACCAAACAGTAGTATAGAA+TGG - chr1_4:50905505-50905524 None:intergenic 30.0%
!!! TTATTTTAGCAACTCGATCA+CGG + chr1_4:50905523-50905542 Msa0168360:intron 30.0%
AAGCAACTCAAACATTAGAA+TGG + chr1_4:50905802-50905821 Msa0168360:CDS 30.0%
AGCAACTCAAACATTAGAAT+GGG + chr1_4:50905803-50905822 Msa0168360:CDS 30.0%
AATACTTAGTTTCAGTTGTC+TGG + chr1_4:50906172-50906191 Msa0168360:three_prime_UTR 30.0%
!!! TTCAATCTATCCTTGTTTTG+TGG + chr1_4:50904811-50904830 Msa0168360:five_prime_UTR 30.0%
! GATACTAGTTTAAGTGAAGT+TGG - chr1_4:50904874-50904893 None:intergenic 30.0%
ACTTCACTTAAACTAGTATC+TGG + chr1_4:50904874-50904893 Msa0168360:five_prime_UTR 30.0%
TTAGTAAGTGTGGATGATTA+TGG - chr1_4:50904942-50904961 None:intergenic 30.0%
!!! GTTTTAAAACTTGAACCGAA+CGG + chr1_4:50905478-50905497 Msa0168360:intron 30.0%
AACCAAACAGTAGTATAGAA+TGG - chr1_4:50905505-50905524 None:intergenic 30.0%
!!! TTATTTTAGCAACTCGATCA+CGG + chr1_4:50905523-50905542 Msa0168360:intron 30.0%
AAGCAACTCAAACATTAGAA+TGG + chr1_4:50905802-50905821 Msa0168360:CDS 30.0%
AGCAACTCAAACATTAGAAT+GGG + chr1_4:50905803-50905822 Msa0168360:CDS 30.0%
AATACTTAGTTTCAGTTGTC+TGG + chr1_4:50906172-50906191 Msa0168360:three_prime_UTR 30.0%
ACAAACAACATACCAAGAAC+AGG - chr1_4:50905065-50905084 None:intergenic 35.0%
ACATAGCAAAAACCACATGT+TGG - chr1_4:50905306-50905325 None:intergenic 35.0%
!!! CGGTTCAAGTTTTAAAACAC+TGG - chr1_4:50905476-50905495 None:intergenic 35.0%
GTCCATTCTATACTACTGTT+TGG + chr1_4:50905500-50905519 Msa0168360:intron 35.0%
TGTCTCGTCAGTTTGATATT+TGG + chr1_4:50905593-50905612 Msa0168360:intron 35.0%
CGTCAGTTTGATATTTGGTT+TGG + chr1_4:50905598-50905617 Msa0168360:intron 35.0%
TTATTCAGGATTGCCAACAA+TGG + chr1_4:50905724-50905743 Msa0168360:intron 35.0%
TTGCTTTCATTCACAGAAGA+AGG - chr1_4:50905788-50905807 None:intergenic 35.0%
CGAGAGTTTAAGAAAAGAAG+AGG - chr1_4:50906146-50906165 None:intergenic 35.0%
ACAAACAACATACCAAGAAC+AGG - chr1_4:50905065-50905084 None:intergenic 35.0%
ACATAGCAAAAACCACATGT+TGG - chr1_4:50905306-50905325 None:intergenic 35.0%
!!! CGGTTCAAGTTTTAAAACAC+TGG - chr1_4:50905476-50905495 None:intergenic 35.0%
GTCCATTCTATACTACTGTT+TGG + chr1_4:50905500-50905519 Msa0168360:intron 35.0%
TGTCTCGTCAGTTTGATATT+TGG + chr1_4:50905593-50905612 Msa0168360:intron 35.0%
CGTCAGTTTGATATTTGGTT+TGG + chr1_4:50905598-50905617 Msa0168360:intron 35.0%
TTATTCAGGATTGCCAACAA+TGG + chr1_4:50905724-50905743 Msa0168360:intron 35.0%
TTGCTTTCATTCACAGAAGA+AGG - chr1_4:50905788-50905807 None:intergenic 35.0%
CGAGAGTTTAAGAAAAGAAG+AGG - chr1_4:50906146-50906165 None:intergenic 35.0%
GATAGATTGAAGCTCATGGT+TGG - chr1_4:50904802-50904821 None:intergenic 40.0%
CAAGGATAGATTGAAGCTCA+TGG - chr1_4:50904806-50904825 None:intergenic 40.0%
!!! TATCCTTGTTTTGTGGTGCA+TGG + chr1_4:50904818-50904837 Msa0168360:five_prime_UTR 40.0%
! TCTTTTGTGCAAGACATGCA+CGG - chr1_4:50905019-50905038 None:intergenic 40.0%
ATTGTTGAAGCTCCAACATG+TGG + chr1_4:50905291-50905310 Msa0168360:intron 40.0%
AAATCAAGAGACGGTAGTCT+TGG - chr1_4:50905386-50905405 None:intergenic 40.0%
! ATGCCATCTAGTTTAGTACC+CGG - chr1_4:50905445-50905464 None:intergenic 40.0%
GTAGTATAGAATGGACCGTT+CGG - chr1_4:50905496-50905515 None:intergenic 40.0%
TTCCTTAAATCGCTCGAATC+GGG - chr1_4:50905555-50905574 None:intergenic 40.0%
CTTCCTTAAATCGCTCGAAT+CGG - chr1_4:50905556-50905575 None:intergenic 40.0%
!! GATGAAAGAATGAGCACTGA+AGG + chr1_4:50905890-50905909 Msa0168360:CDS 40.0%
CAAAAAGGATCCATCCAAGA+AGG - chr1_4:50905946-50905965 None:intergenic 40.0%
! CTTCTTGGATGGATCCTTTT+TGG + chr1_4:50905944-50905963 Msa0168360:CDS 40.0%
GATAGATTGAAGCTCATGGT+TGG - chr1_4:50904802-50904821 None:intergenic 40.0%
CAAGGATAGATTGAAGCTCA+TGG - chr1_4:50904806-50904825 None:intergenic 40.0%
!!! TATCCTTGTTTTGTGGTGCA+TGG + chr1_4:50904818-50904837 Msa0168360:five_prime_UTR 40.0%
! TCTTTTGTGCAAGACATGCA+CGG - chr1_4:50905019-50905038 None:intergenic 40.0%
ATTGTTGAAGCTCCAACATG+TGG + chr1_4:50905291-50905310 Msa0168360:intron 40.0%
AAATCAAGAGACGGTAGTCT+TGG - chr1_4:50905386-50905405 None:intergenic 40.0%
! ATGCCATCTAGTTTAGTACC+CGG - chr1_4:50905445-50905464 None:intergenic 40.0%
GTAGTATAGAATGGACCGTT+CGG - chr1_4:50905496-50905515 None:intergenic 40.0%
TTCCTTAAATCGCTCGAATC+GGG - chr1_4:50905555-50905574 None:intergenic 40.0%
CTTCCTTAAATCGCTCGAAT+CGG - chr1_4:50905556-50905575 None:intergenic 40.0%
!! GATGAAAGAATGAGCACTGA+AGG + chr1_4:50905890-50905909 Msa0168360:CDS 40.0%
CAAAAAGGATCCATCCAAGA+AGG - chr1_4:50905946-50905965 None:intergenic 40.0%
! CTTCTTGGATGGATCCTTTT+TGG + chr1_4:50905944-50905963 Msa0168360:CDS 40.0%
AGTCCATGCACCACAAAACA+AGG - chr1_4:50904824-50904843 None:intergenic 45.0%
GAGACAGAAGAGAAGTAGCT+TGG + chr1_4:50904896-50904915 Msa0168360:five_prime_UTR 45.0%
AGTTGTAGTGGTTGCTGAGA+TGG - chr1_4:50904985-50905004 None:intergenic 45.0%
! CTTTTGTGCAAGACATGCAC+GGG - chr1_4:50905018-50905037 None:intergenic 45.0%
GTTTCATCCTCTCCTGTTCT+TGG + chr1_4:50905050-50905069 Msa0168360:CDS 45.0%
CAACATACCAAGAACAGGAG+AGG - chr1_4:50905060-50905079 None:intergenic 45.0%
TTCCCGGGTACTAAACTAGA+TGG + chr1_4:50905439-50905458 Msa0168360:intron 45.0%
! TGCCATCTAGTTTAGTACCC+GGG - chr1_4:50905444-50905463 None:intergenic 45.0%
AGGATTGCCAACAATGGCTA+AGG + chr1_4:50905730-50905749 Msa0168360:intron 45.0%
TTGCCAACAATGGCTAAGGT+AGG + chr1_4:50905734-50905753 Msa0168360:CDS 45.0%
CTTCCTACCTTAGCCATTGT+TGG - chr1_4:50905740-50905759 None:intergenic 45.0%
! AGGAAGAGTGAGGTGTTCAA+TGG + chr1_4:50905754-50905773 Msa0168360:CDS 45.0%
! AAGAGTGAGGTGTTCAATGG+AGG + chr1_4:50905757-50905776 Msa0168360:CDS 45.0%
! AGAGTGAGGTGTTCAATGGA+GGG + chr1_4:50905758-50905777 Msa0168360:CDS 45.0%
TCTTTCATCCACCAATGCCA+TGG - chr1_4:50905879-50905898 None:intergenic 45.0%
!! AGAATGAGCACTGAAGGAAC+CGG + chr1_4:50905896-50905915 Msa0168360:CDS 45.0%
AGGTTGTTGCTGAGTCCAAA+GGG - chr1_4:50905926-50905945 None:intergenic 45.0%
AAGGTTGTTGCTGAGTCCAA+AGG - chr1_4:50905927-50905946 None:intergenic 45.0%
TCAGCAACAACCTTCTTGGA+TGG + chr1_4:50905933-50905952 Msa0168360:CDS 45.0%
!! TGGATCCTTTTTGGCGTGTT+CGG + chr1_4:50905953-50905972 Msa0168360:CDS 45.0%
TAAGACCGAACACGCCAAAA+AGG - chr1_4:50905961-50905980 None:intergenic 45.0%
CTTGAAGAGGATGAAGAGTC+TGG + chr1_4:50906013-50906032 Msa0168360:CDS 45.0%
AGTCCATGCACCACAAAACA+AGG - chr1_4:50904824-50904843 None:intergenic 45.0%
GAGACAGAAGAGAAGTAGCT+TGG + chr1_4:50904896-50904915 Msa0168360:five_prime_UTR 45.0%
AGTTGTAGTGGTTGCTGAGA+TGG - chr1_4:50904985-50905004 None:intergenic 45.0%
! CTTTTGTGCAAGACATGCAC+GGG - chr1_4:50905018-50905037 None:intergenic 45.0%
GTTTCATCCTCTCCTGTTCT+TGG + chr1_4:50905050-50905069 Msa0168360:CDS 45.0%
CAACATACCAAGAACAGGAG+AGG - chr1_4:50905060-50905079 None:intergenic 45.0%
TTCCCGGGTACTAAACTAGA+TGG + chr1_4:50905439-50905458 Msa0168360:intron 45.0%
! TGCCATCTAGTTTAGTACCC+GGG - chr1_4:50905444-50905463 None:intergenic 45.0%
AGGATTGCCAACAATGGCTA+AGG + chr1_4:50905730-50905749 Msa0168360:intron 45.0%
TTGCCAACAATGGCTAAGGT+AGG + chr1_4:50905734-50905753 Msa0168360:CDS 45.0%
CTTCCTACCTTAGCCATTGT+TGG - chr1_4:50905740-50905759 None:intergenic 45.0%
! AGGAAGAGTGAGGTGTTCAA+TGG + chr1_4:50905754-50905773 Msa0168360:CDS 45.0%
! AAGAGTGAGGTGTTCAATGG+AGG + chr1_4:50905757-50905776 Msa0168360:CDS 45.0%
! AGAGTGAGGTGTTCAATGGA+GGG + chr1_4:50905758-50905777 Msa0168360:CDS 45.0%
TCTTTCATCCACCAATGCCA+TGG - chr1_4:50905879-50905898 None:intergenic 45.0%
!! AGAATGAGCACTGAAGGAAC+CGG + chr1_4:50905896-50905915 Msa0168360:CDS 45.0%
AGGTTGTTGCTGAGTCCAAA+GGG - chr1_4:50905926-50905945 None:intergenic 45.0%
AAGGTTGTTGCTGAGTCCAA+AGG - chr1_4:50905927-50905946 None:intergenic 45.0%
TCAGCAACAACCTTCTTGGA+TGG + chr1_4:50905933-50905952 Msa0168360:CDS 45.0%
!! TGGATCCTTTTTGGCGTGTT+CGG + chr1_4:50905953-50905972 Msa0168360:CDS 45.0%
TAAGACCGAACACGCCAAAA+AGG - chr1_4:50905961-50905980 None:intergenic 45.0%
CTTGAAGAGGATGAAGAGTC+TGG + chr1_4:50906013-50906032 Msa0168360:CDS 45.0%
GGTGATCGATGCAGTTGTAG+TGG - chr1_4:50904997-50905016 None:intergenic 50.0%
GGAGAGGATGAAACTGCAAG+AGG - chr1_4:50905044-50905063 None:intergenic 50.0%
! GTCCCGATTCGAGCGATTTA+AGG + chr1_4:50905550-50905569 Msa0168360:intron 50.0%
TGGCTAAGGTAGGAAGAGTG+AGG + chr1_4:50905744-50905763 Msa0168360:CDS 50.0%
!! GAATGAGCACTGAAGGAACC+GGG + chr1_4:50905897-50905916 Msa0168360:CDS 50.0%
GGACTCAGCAACAACCTTCT+TGG + chr1_4:50905929-50905948 Msa0168360:CDS 50.0%
! TTGGCGTGTTCGGTCTTATC+TGG + chr1_4:50905963-50905982 Msa0168360:CDS 50.0%
! TGGCGTGTTCGGTCTTATCT+GGG + chr1_4:50905964-50905983 Msa0168360:CDS 50.0%
CTACGCTTCGAGTCTTGAAG+AGG + chr1_4:50906000-50906019 Msa0168360:CDS 50.0%
GGTGATCGATGCAGTTGTAG+TGG - chr1_4:50904997-50905016 None:intergenic 50.0%
GGAGAGGATGAAACTGCAAG+AGG - chr1_4:50905044-50905063 None:intergenic 50.0%
! GTCCCGATTCGAGCGATTTA+AGG + chr1_4:50905550-50905569 Msa0168360:intron 50.0%
TGGCTAAGGTAGGAAGAGTG+AGG + chr1_4:50905744-50905763 Msa0168360:CDS 50.0%
!! GAATGAGCACTGAAGGAACC+GGG + chr1_4:50905897-50905916 Msa0168360:CDS 50.0%
GGACTCAGCAACAACCTTCT+TGG + chr1_4:50905929-50905948 Msa0168360:CDS 50.0%
! TTGGCGTGTTCGGTCTTATC+TGG + chr1_4:50905963-50905982 Msa0168360:CDS 50.0%
! TGGCGTGTTCGGTCTTATCT+GGG + chr1_4:50905964-50905983 Msa0168360:CDS 50.0%
CTACGCTTCGAGTCTTGAAG+AGG + chr1_4:50906000-50906019 Msa0168360:CDS 50.0%
GATGTCAAGCCCAGCAGCCA+TGG + chr1_4:50905859-50905878 Msa0168360:CDS 60.0%
AAGCCCAGCAGCCATGGCAT+TGG + chr1_4:50905865-50905884 Msa0168360:CDS 60.0%
CCACCAATGCCATGGCTGCT+GGG - chr1_4:50905871-50905890 None:intergenic 60.0%
TCCACCAATGCCATGGCTGC+TGG - chr1_4:50905872-50905891 None:intergenic 60.0%
GAAGGAACCGGGCTTCCCTT+TGG + chr1_4:50905908-50905927 Msa0168360:CDS 60.0%
GCTGAGTCCAAAGGGAAGCC+CGG - chr1_4:50905918-50905937 None:intergenic 60.0%
GATGTCAAGCCCAGCAGCCA+TGG + chr1_4:50905859-50905878 Msa0168360:CDS 60.0%
AAGCCCAGCAGCCATGGCAT+TGG + chr1_4:50905865-50905884 Msa0168360:CDS 60.0%
CCACCAATGCCATGGCTGCT+GGG - chr1_4:50905871-50905890 None:intergenic 60.0%
TCCACCAATGCCATGGCTGC+TGG - chr1_4:50905872-50905891 None:intergenic 60.0%
GAAGGAACCGGGCTTCCCTT+TGG + chr1_4:50905908-50905927 Msa0168360:CDS 60.0%
GCTGAGTCCAAAGGGAAGCC+CGG - chr1_4:50905918-50905937 None:intergenic 60.0%
! CCCAGCAGCCATGGCATTGG+TGG + chr1_4:50905868-50905887 Msa0168360:CDS 65.0%
! CCCAGCAGCCATGGCATTGG+TGG + chr1_4:50905868-50905887 Msa0168360:CDS 65.0%
Chromosome Type Strat End Strand Name
chr1_4 gene 50904793 50906252 50904793 ID=Msa0168360;Name=Msa0168360
chr1_4 mRNA 50904793 50906252 50904793 ID=Msa0168360-mRNA-1;Parent=Msa0168360;Name=Msa0168360-mRNA-1;_AED=0.00;_eAED=0.00;_QI=182|1|1|1|1|1|2|204|137
chr1_4 exon 50904793 50905071 50904793 ID=Msa0168360-mRNA-1:exon:14955;Parent=Msa0168360-mRNA-1
chr1_4 exon 50905732 50906252 50905732 ID=Msa0168360-mRNA-1:exon:14956;Parent=Msa0168360-mRNA-1
chr1_4 five_prime_UTR 50904793 50904974 50904793 ID=Msa0168360-mRNA-1:five_prime_utr;Parent=Msa0168360-mRNA-1
chr1_4 CDS 50904975 50905071 50904975 ID=Msa0168360-mRNA-1:cds;Parent=Msa0168360-mRNA-1
chr1_4 CDS 50905732 50906048 50905732 ID=Msa0168360-mRNA-1:cds;Parent=Msa0168360-mRNA-1
chr1_4 three_prime_UTR 50906049 50906252 50906049 ID=Msa0168360-mRNA-1:three_prime_utr;Parent=Msa0168360-mRNA-1
Gene Sequence

>Msa0168360

ATGGCAACCATCTCAGCAACCACTACAACTGCATCGATCACCCGTGCATGTCTTGCACAAAAGAGACCTCTTGCAGTTTCATCCTCTCCTGTTCTTGGATTGCCAACAATGGCTAAGGTAGGAAGAGTGAGGTGTTCAATGGAGGGAAAGCCTTCTTCTGTGAATGAAAGCAACTCAAACATTAGAATGGGATCATCTTTGTTTGCAGCTGCATGTGCTGCAGCGATGTCAAGCCCAGCAGCCATGGCATTGGTGGATGAAAGAATGAGCACTGAAGGAACCGGGCTTCCCTTTGGACTCAGCAACAACCTTCTTGGATGGATCCTTTTTGGCGTGTTCGGTCTTATCTGGGCTCTCTATTTTATCTACGCTTCGAGTCTTGAAGAGGATGAAGAGTCTGGATTGTCTCTTTAA

Protein sequence

>Msa0168360

MATISATTTTASITRACLAQKRPLAVSSSPVLGLPTMAKVGRVRCSMEGKPSSVNESNSNIRMGSSLFAAACAAAMSSPAAMALVDERMSTEGTGLPFGLSNNLLGWILFGVFGLIWALYFIYASSLEEDEESGLSL*