AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1455180


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1455180 MtrunA17_Chr7g0259311 96.789 218 7 0 44 261 1 218 5.15e-157 435
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1455180 AT2G48070.1 80.986 142 27 0 120 261 56 197 1.43e-83 248
Msa1455180 AT2G48070.2 80.986 142 27 0 120 261 56 197 1.43e-83 248
Msa1455180 AT2G48070.3 78.767 146 27 1 120 261 56 201 3.02e-81 243

Find 96 sgRNAs with CRISPR-Local

Find 162 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATGATCTGTATCACTGATTT+TGG 0.119161 tig0035604:-5873 Msa1455180:three_prime_UTR
CTTCAGACCAACCTGATCTT+TGG 0.218609 tig0035604:-7196 Msa1455180:CDS
ACTAAATTACATTTCATCTT+TGG 0.225995 tig0035604:+5913 None:intergenic
GCAGATATAATAGCTTTCTT+TGG 0.277583 tig0035604:-6436 Msa1455180:CDS
CTTCAAACCATTACCTTTGT+AGG 0.281560 tig0035604:-8030 Msa1455180:CDS
CTAAATTACATTTCATCTTT+GGG 0.304114 tig0035604:+5914 None:intergenic
TTGCCTTAGTTAACATTTGA+TGG 0.308946 tig0035604:+5612 None:intergenic
AATAGACAAAGAACTTAAAA+AGG 0.330342 tig0035604:-7822 Msa1455180:intron
CCACTTAAACTCTTAATTAA+CGG 0.351812 tig0035604:+8208 None:intergenic
AGAGGAAGGGCTTTCTTCAT+TGG 0.357141 tig0035604:+7859 None:intergenic
ACCTGATCTTTGGAGATTGA+TGG 0.394975 tig0035604:-7186 Msa1455180:CDS
TGATGGGAATGTGGTCCATT+TGG 0.397897 tig0035604:-7169 Msa1455180:CDS
AGGGCTTTCTTCATTGGTGT+TGG 0.403425 tig0035604:+7865 None:intergenic
GATGGTCCTTCAATAATTCA+TGG 0.407473 tig0035604:+5630 None:intergenic
TGAAAGGAACTTTGGAAGGT+TGG 0.413504 tig0035604:+7967 None:intergenic
GAACTTACTGAACATCCAAA+TGG 0.422454 tig0035604:+7154 None:intergenic
CTTAAGGTTGAAAGGAACTT+TGG 0.423634 tig0035604:+7959 None:intergenic
TGAAGTCCTTTGCTGTTGTT+TGG 0.424798 tig0035604:-6462 Msa1455180:CDS
ACAGTATACAAGGTACTTCC+AGG 0.432743 tig0035604:+7284 None:intergenic
CCGTTAATTAAGAGTTTAAG+TGG 0.433919 tig0035604:-8208 Msa1455180:five_prime_UTR
TGTGTCTACTAGGGAGTTAG+AGG 0.436256 tig0035604:-6036 Msa1455180:three_prime_UTR
AACACAAGGATGAAAGAATT+CGG 0.439484 tig0035604:-6080 Msa1455180:three_prime_UTR
GGGATAAGGTGAGCGTCTTA+AGG 0.439792 tig0035604:+7943 None:intergenic
AGCGTATGTATCAATGTTGT+TGG 0.442954 tig0035604:-7249 Msa1455180:CDS
AGCTGCAACCTTTGCACCGA+GGG 0.452896 tig0035604:-7336 Msa1455180:CDS
ATTTGAAGTGGCACATGCAA+TGG 0.456020 tig0035604:+7922 None:intergenic
CAACATTGAGCAAGGGAACT+AGG 0.458291 tig0035604:+6500 None:intergenic
TTTGATGCTGTCGAAGCCCT+CGG 0.459561 tig0035604:+7320 None:intergenic
CTTTGGAATGTATGCATGGA+AGG 0.470844 tig0035604:-6419 Msa1455180:intron
CCTGGCGGTTAACTCTTTGA+AGG 0.473984 tig0035604:-6206 Msa1455180:three_prime_UTR
CGGTGTGGATTTGAACCACT+TGG 0.476037 tig0035604:+8228 None:intergenic
GCTTGGATGGCTCCAGAAAA+CGG 0.476983 tig0035604:-6243 Msa1455180:CDS
CCCATCAATCTCCAAAGATC+AGG 0.478700 tig0035604:+7185 None:intergenic
AAAGAGTTAACCGCCAGGTT+GGG 0.480118 tig0035604:+6211 None:intergenic
ACCCTACCCTTTAGTCTCTC+CGG 0.480407 tig0035604:-8005 Msa1455180:CDS
TTTAAGTTCTTTGTCTATTG+GGG 0.483215 tig0035604:+7826 None:intergenic
TTTGAAGTGGCACATGCAAT+GGG 0.489031 tig0035604:+7923 None:intergenic
TGCAACTTCTTCATTTGAAG+TGG 0.492947 tig0035604:+7910 None:intergenic
GAATTCGGCGTGGAAATTCC+AGG 0.493667 tig0035604:-6065 Msa1455180:three_prime_UTR
TTCAAACCATTACCTTTGTA+GGG 0.495407 tig0035604:-8029 Msa1455180:CDS
AAGGTACTTCCAGGTACTGC+AGG 0.496122 tig0035604:+7293 None:intergenic
CCTGATCTTTGGAGATTGAT+GGG 0.498697 tig0035604:-7185 Msa1455180:CDS
CAAAGATCAGGTTGGTCTGA+AGG 0.501488 tig0035604:+7197 None:intergenic
TTTGGAAATTAAGTTGTCAT+CGG 0.506667 tig0035604:+8090 None:intergenic
TGATGGCCATGAATTATTGA+AGG 0.512425 tig0035604:-5636 Msa1455180:three_prime_UTR
GTTGACTCTTGAATTTCTCA+AGG 0.513512 tig0035604:-6180 Msa1455180:three_prime_UTR
CGAGGATGGTGATGAGAAGA+TGG 0.517965 tig0035604:+8118 None:intergenic
TGATGAGAAGATGGAAGATA+AGG 0.519078 tig0035604:+8127 None:intergenic
GTCCTTTGCTGTTGTTTGGT+CGG 0.519274 tig0035604:-6458 Msa1455180:CDS
GTGGCACATGCAATGGGATA+AGG 0.520683 tig0035604:+7929 None:intergenic
CAATCTCGAGCTCGCAAGGA+AGG 0.524706 tig0035604:+6562 None:intergenic
CAAAGAGTTAACCGCCAGGT+TGG 0.526851 tig0035604:+6210 None:intergenic
GATGAAATGTAATTTAGTCA+TGG 0.530814 tig0035604:-5908 Msa1455180:three_prime_UTR
GTTAGAACCGGAGAGACTAA+AGG 0.536566 tig0035604:+7998 None:intergenic
ACGGACTAGTTGACCCAACC+TGG 0.539522 tig0035604:-6224 Msa1455180:exon
AAAGATCAGGTTGGTCTGAA+GGG 0.540412 tig0035604:+7198 None:intergenic
TAAACTCTTAATTAACGGTG+TGG 0.541768 tig0035604:+8213 None:intergenic
TGAGCAATCTCGAGCTCGCA+AGG 0.542578 tig0035604:+6558 None:intergenic
AGGTTGAAAGGAACTTTGGA+AGG 0.543188 tig0035604:+7963 None:intergenic
TTAGAACCGGAGAGACTAAA+GGG 0.546223 tig0035604:+7999 None:intergenic
CTAGTAGACACAAAAGCACC+TGG 0.556106 tig0035604:+6047 None:intergenic
AGGGTACCCTACAAAGGTAA+TGG 0.556258 tig0035604:+8023 None:intergenic
ACTAGGGAGTTAGAGGTCAA+AGG 0.567066 tig0035604:-6029 Msa1455180:three_prime_UTR
CTTTCTTTGGAATGTATGCA+TGG 0.570202 tig0035604:-6423 Msa1455180:CDS
GCGTATGTATCAATGTTGTT+GGG 0.573235 tig0035604:-7248 Msa1455180:CDS
TGTCGAAGCCCTCGGTGCAA+AGG 0.574377 tig0035604:+7328 None:intergenic
GATGGAAGATAAGGAATGTG+AGG 0.576599 tig0035604:+8136 None:intergenic
AATTACATTTCATCTTTGGG+AGG 0.577037 tig0035604:+5917 None:intergenic
ACCGGAGAGACTAAAGGGTA+GGG 0.579953 tig0035604:+8004 None:intergenic
GTGTTGATGATTGTGATCTA+CGG 0.584292 tig0035604:+6098 None:intergenic
TGGGATTGCAACATTGAGCA+AGG 0.584925 tig0035604:+6492 None:intergenic
GGAAGATAAGGAATGTGAGG+TGG 0.589140 tig0035604:+8139 None:intergenic
CCTTCAAAGAGTTAACCGCC+AGG 0.591371 tig0035604:+6206 None:intergenic
GTGAGCGTCTTAAGGTTGAA+AGG 0.599426 tig0035604:+7951 None:intergenic
AACTTCGAAAACAGTATACA+AGG 0.600769 tig0035604:+7274 None:intergenic
AGTGTCAAACAATTAAGCAA+TGG 0.602769 tig0035604:+5713 None:intergenic
AGGTACTTCCAGGTACTGCA+GGG 0.609643 tig0035604:+7294 None:intergenic
TGTCATCGGAAACTCGAGGA+TGG 0.615104 tig0035604:+8104 None:intergenic
AGAATGAGAGACATTAGTGA+TGG 0.615201 tig0035604:-5653 Msa1455180:three_prime_UTR
TGCCGACCAAACAACAGCAA+AGG 0.622540 tig0035604:+6456 None:intergenic
TTTGGAGATTGATGGGAATG+TGG 0.629488 tig0035604:-7178 Msa1455180:CDS
AACCGGAGAGACTAAAGGGT+AGG 0.635044 tig0035604:+8003 None:intergenic
GGTGTGGATTTGAACCACTT+GGG 0.637511 tig0035604:+8229 None:intergenic
AAGGGTAGGGTACCCTACAA+AGG 0.641142 tig0035604:+8017 None:intergenic
TTTAAATGAAAATTAAACAG+TGG 0.642441 tig0035604:+5743 None:intergenic
TCAATCTCCAAAGATCAGGT+TGG 0.648619 tig0035604:+7189 None:intergenic
TGTGAGGTGGAGTAGTGACT+AGG 0.655347 tig0035604:+8152 None:intergenic
TATGTATCAATGTTGTTGGG+TGG 0.657784 tig0035604:-7245 Msa1455180:CDS
GGGATTGCAACATTGAGCAA+GGG 0.659930 tig0035604:+6493 None:intergenic
CAGCTGCAACCTTTGCACCG+AGG 0.683525 tig0035604:-7337 Msa1455180:CDS
AGATCACAATCATCAACACA+AGG 0.704089 tig0035604:-6094 Msa1455180:three_prime_UTR
AAGGATGAAAGAATTCGGCG+TGG 0.714240 tig0035604:-6075 Msa1455180:three_prime_UTR
GACTAGTTGACCCAACCTGG+CGG 0.720286 tig0035604:-6221 Msa1455180:exon
CATTGAGCAAGGGAACTAGG+AGG 0.725133 tig0035604:+6503 None:intergenic
AAGTTGTCATCGGAAACTCG+AGG 0.750720 tig0035604:+8100 None:intergenic
AATGTTTGAACACATCATTG+CGG 0.767019 tig0035604:-8179 Msa1455180:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TCATTTCAAATCATATTTTA+AGG - tig0035604:6089-6108 Msa1455180:three_prime_UTR 15.0%
!! TTATAACTTATAAGTTCTTT+AGG - tig0035604:6237-6256 Msa1455180:exon 15.0%
!! TTCAAAATCAAGATAAAAAA+TGG + tig0035604:6729-6748 None:intergenic 15.0%
!! TAAATATGAGAAAGAATATT+AGG - tig0035604:6852-6871 Msa1455180:intron 15.0%
!! TTTAAATGAAAATTAAACAG+TGG + tig0035604:8109-8128 None:intergenic 15.0%
!!! TTTTAAGTTCTTTGTCTATT+GGG + tig0035604:6027-6046 None:intergenic 20.0%
!!! TTTTTAAGTTCTTTGTCTAT+TGG + tig0035604:6028-6047 None:intergenic 20.0%
!! AATAGACAAAGAACTTAAAA+AGG - tig0035604:6027-6046 Msa1455180:three_prime_UTR 20.0%
!!! TGATTTGAAATGAAAATTGA+AGG + tig0035604:6082-6101 None:intergenic 20.0%
!!! AGCATAGATTTTTACAAAAT+GGG + tig0035604:6118-6137 None:intergenic 20.0%
!!! AAGCATAGATTTTTACAAAA+TGG + tig0035604:6119-6138 None:intergenic 20.0%
!!! CTTTTCTAAAAATTGATCAA+GGG - tig0035604:6136-6155 Msa1455180:three_prime_UTR 20.0%
!! ATTAGAAAGATAGAGAAAAA+TGG - tig0035604:6437-6456 Msa1455180:CDS 20.0%
!! AAATCAAGATAAAAAATGGT+AGG + tig0035604:6725-6744 None:intergenic 20.0%
!! TTCTTTCTCATATTTACAAA+AGG + tig0035604:6848-6867 None:intergenic 20.0%
!! CTAAATTACATTTCATCTTT+GGG + tig0035604:7938-7957 None:intergenic 20.0%
!! ACTAAATTACATTTCATCTT+TGG + tig0035604:7939-7958 None:intergenic 20.0%
! CCACTTAAACTCTTAATTAA+CGG + tig0035604:5644-5663 None:intergenic 25.0%
!! TTTGGAAATTAAGTTGTCAT+CGG + tig0035604:5762-5781 None:intergenic 25.0%
!! AAGTGTTCATCTTTTCTTTT+GGG + tig0035604:5790-5809 None:intergenic 25.0%
!!! AAAGTGTTCATCTTTTCTTT+TGG + tig0035604:5791-5810 None:intergenic 25.0%
!! TTTAAGTTCTTTGTCTATTG+GGG + tig0035604:6026-6045 None:intergenic 25.0%
! ATTGAAGGATTATAGAAAGA+TGG + tig0035604:6067-6086 None:intergenic 25.0%
!!! GCTTTTCTAAAAATTGATCA+AGG - tig0035604:6135-6154 Msa1455180:three_prime_UTR 25.0%
! GATAGCTTATGAACATAATT+TGG - tig0035604:6259-6278 Msa1455180:intron 25.0%
!!! ATGTTTGTTGTTGAATTGAT+AGG - tig0035604:6477-6496 Msa1455180:CDS 25.0%
! AATTACAAGCTAAATTCGAT+GGG + tig0035604:6904-6923 None:intergenic 25.0%
!!! TATGTTAATTTGTCACCATT+GGG + tig0035604:6995-7014 None:intergenic 25.0%
!!! ATATGTTAATTTGTCACCAT+TGG + tig0035604:6996-7015 None:intergenic 25.0%
! AATTGCTATGATTCTTTACT+TGG - tig0035604:7215-7234 Msa1455180:CDS 25.0%
! CTTTACTTGGAGTAAAAAAT+TGG - tig0035604:7228-7247 Msa1455180:CDS 25.0%
!! TTTAGTTTATTGCTCATTAG+AGG + tig0035604:7481-7500 None:intergenic 25.0%
!! ATCGTCAAATATTGATAACA+TGG + tig0035604:7569-7588 None:intergenic 25.0%
! GATGAAATGTAATTTAGTCA+TGG - tig0035604:7941-7960 Msa1455180:CDS 25.0%
!!! TCTCAATTTTAATTTTCGTC+TGG + tig0035604:8025-8044 None:intergenic 25.0%
TAAACTCTTAATTAACGGTG+TGG + tig0035604:5639-5658 None:intergenic 30.0%
CCGTTAATTAAGAGTTTAAG+TGG - tig0035604:5641-5660 Msa1455180:three_prime_UTR 30.0%
AATGTTTGAACACATCATTG+CGG - tig0035604:5670-5689 Msa1455180:three_prime_UTR 30.0%
TTCAAACCATTACCTTTGTA+GGG - tig0035604:5820-5839 Msa1455180:three_prime_UTR 30.0%
GACAAAGAACTTAAAAAGGT+TGG - tig0035604:6031-6050 Msa1455180:three_prime_UTR 30.0%
!! TTTGTTGTTGAATTGATAGG+TGG - tig0035604:6480-6499 Msa1455180:CDS 30.0%
AACTTCGAAAACAGTATACA+AGG + tig0035604:6578-6597 None:intergenic 30.0%
CAATTACAAGCTAAATTCGA+TGG + tig0035604:6905-6924 None:intergenic 30.0%
GTAATACTCAAGTCTAACAT+TGG + tig0035604:6973-6992 None:intergenic 30.0%
GGTGACAAATTAACATATCT+AGG - tig0035604:6998-7017 Msa1455180:intron 30.0%
CAAAGGACTTCAAAAAGAAT+GGG + tig0035604:7379-7398 None:intergenic 30.0%
GCAGATATAATAGCTTTCTT+TGG - tig0035604:7413-7432 Msa1455180:intron 30.0%
AACACAAGGATGAAAGAATT+CGG - tig0035604:7769-7788 Msa1455180:intron 30.0%
AATTACATTTCATCTTTGGG+AGG + tig0035604:7935-7954 None:intergenic 30.0%
!!! ATGATCTGTATCACTGATTT+TGG - tig0035604:7976-7995 Msa1455180:CDS 30.0%
AGTGTCAAACAATTAAGCAA+TGG + tig0035604:8139-8158 None:intergenic 30.0%
TGATGAGAAGATGGAAGATA+AGG + tig0035604:5725-5744 None:intergenic 35.0%
!! TTCATCTTTTCTTTTGGGAG+GGG + tig0035604:5785-5804 None:intergenic 35.0%
!! GTTCATCTTTTCTTTTGGGA+GGG + tig0035604:5786-5805 None:intergenic 35.0%
! TGTTCATCTTTTCTTTTGGG+AGG + tig0035604:5787-5806 None:intergenic 35.0%
CTTCAAACCATTACCTTTGT+AGG - tig0035604:5819-5838 Msa1455180:three_prime_UTR 35.0%
!!! TTGGTTTTGTTGGTTAGAAC+CGG + tig0035604:5866-5885 None:intergenic 35.0%
CTTAAGGTTGAAAGGAACTT+TGG + tig0035604:5893-5912 None:intergenic 35.0%
TGCAACTTCTTCATTTGAAG+TGG + tig0035604:5942-5961 None:intergenic 35.0%
AACAAGAGCTTCAGTTAGAA+AGG - tig0035604:6376-6395 Msa1455180:intron 35.0%
! ATGTTGCTTGAGAGTAAATG+AGG - tig0035604:6412-6431 Msa1455180:intron 35.0%
! TGTTGCTTGAGAGTAAATGA+GGG - tig0035604:6413-6432 Msa1455180:intron 35.0%
AGCGTATGTATCAATGTTGT+TGG - tig0035604:6600-6619 Msa1455180:intron 35.0%
GCGTATGTATCAATGTTGTT+GGG - tig0035604:6601-6620 Msa1455180:intron 35.0%
TATGTATCAATGTTGTTGGG+TGG - tig0035604:6604-6623 Msa1455180:intron 35.0%
GAACTTACTGAACATCCAAA+TGG + tig0035604:6698-6717 None:intergenic 35.0%
TTGCATAAATGAACAAGTGC+TGG - tig0035604:6751-6770 Msa1455180:intron 35.0%
!! TAAATGAACAAGTGCTGGAA+TGG - tig0035604:6756-6775 Msa1455180:intron 35.0%
ACATTCAGCAGAATGATAAC+TGG + tig0035604:6796-6815 None:intergenic 35.0%
CTGCTGAATGTTTGATTGAT+CGG - tig0035604:6805-6824 Msa1455180:intron 35.0%
TAGACTTGAGTATTACCCAA+TGG - tig0035604:6977-6996 Msa1455180:intron 35.0%
TAAGCTAGATAAAAGGCCTA+AGG + tig0035604:7096-7115 None:intergenic 35.0%
CCACACATAAGCTAGATAAA+AGG + tig0035604:7103-7122 None:intergenic 35.0%
!! CCTTTTATCTAGCTTATGTG+TGG - tig0035604:7100-7119 Msa1455180:intron 35.0%
AGCAATTAGATCTTGCAAGA+AGG + tig0035604:7202-7221 None:intergenic 35.0%
GCAAAGGACTTCAAAAAGAA+TGG + tig0035604:7380-7399 None:intergenic 35.0%
!! CTTTCTTTGGAATGTATGCA+TGG - tig0035604:7426-7445 Msa1455180:intron 35.0%
! GAAGGTACATACGATTTCTT+AGG - tig0035604:7448-7467 Msa1455180:intron 35.0%
! GTTGACTCTTGAATTTCTCA+AGG - tig0035604:7669-7688 Msa1455180:intron 35.0%
!! GTGTTGATGATTGTGATCTA+CGG + tig0035604:7754-7773 None:intergenic 35.0%
AGATCACAATCATCAACACA+AGG - tig0035604:7755-7774 Msa1455180:intron 35.0%
AGAATGAGAGACATTAGTGA+TGG - tig0035604:8196-8215 Msa1455180:exon 35.0%
TGATGGCCATGAATTATTGA+AGG - tig0035604:8213-8232 Msa1455180:five_prime_UTR 35.0%
GATGGTCCTTCAATAATTCA+TGG + tig0035604:8222-8241 None:intergenic 35.0%
GATGGAAGATAAGGAATGTG+AGG + tig0035604:5716-5735 None:intergenic 40.0%
TTAGAACCGGAGAGACTAAA+GGG + tig0035604:5853-5872 None:intergenic 40.0%
!!! CTTTGGAAGGTTGGTTTTGT+TGG + tig0035604:5876-5895 None:intergenic 40.0%
! TGAAAGGAACTTTGGAAGGT+TGG + tig0035604:5885-5904 None:intergenic 40.0%
AGGTTGAAAGGAACTTTGGA+AGG + tig0035604:5889-5908 None:intergenic 40.0%
! TTTGAAGTGGCACATGCAAT+GGG + tig0035604:5929-5948 None:intergenic 40.0%
! ATTTGAAGTGGCACATGCAA+TGG + tig0035604:5930-5949 None:intergenic 40.0%
TATTGGGGTAGAAAAAGCAG+AGG + tig0035604:6011-6030 None:intergenic 40.0%
! ACAGTATACAAGGTACTTCC+AGG + tig0035604:6568-6587 None:intergenic 40.0%
!! AAAGATCAGGTTGGTCTGAA+GGG + tig0035604:6654-6673 None:intergenic 40.0%
TCAATCTCCAAAGATCAGGT+TGG + tig0035604:6663-6682 None:intergenic 40.0%
! ACCTGATCTTTGGAGATTGA+TGG - tig0035604:6663-6682 Msa1455180:intron 40.0%
! CCTGATCTTTGGAGATTGAT+GGG - tig0035604:6664-6683 Msa1455180:intron 40.0%
TTTGGAGATTGATGGGAATG+TGG - tig0035604:6671-6690 Msa1455180:intron 40.0%
! CGTCTTACAAGTCTGGTTTA+TGG + tig0035604:7066-7085 None:intergenic 40.0%
TAAACCAGACTTGTAAGACG+AGG - tig0035604:7066-7085 Msa1455180:intron 40.0%
!! TGAAGTCCTTTGCTGTTGTT+TGG - tig0035604:7387-7406 Msa1455180:intron 40.0%
!! CTTTGGAATGTATGCATGGA+AGG - tig0035604:7430-7449 Msa1455180:intron 40.0%
! ATCTTCCTTTTCTTGCAGCT+TGG - tig0035604:7589-7608 Msa1455180:intron 40.0%
! AGGTGCTTTTGTGTCTACTA+GGG - tig0035604:7804-7823 Msa1455180:intron 40.0%
GGAAGATAAGGAATGTGAGG+TGG + tig0035604:5713-5732 None:intergenic 45.0%
AAGTTGTCATCGGAAACTCG+AGG + tig0035604:5752-5771 None:intergenic 45.0%
!! CTTTTCTTTTGGGAGGGGTT+TGG + tig0035604:5780-5799 None:intergenic 45.0%
! AGGGTACCCTACAAAGGTAA+TGG + tig0035604:5829-5848 None:intergenic 45.0%
GTTAGAACCGGAGAGACTAA+AGG + tig0035604:5854-5873 None:intergenic 45.0%
GTGAGCGTCTTAAGGTTGAA+AGG + tig0035604:5901-5920 None:intergenic 45.0%
AGGGCTTTCTTCATTGGTGT+TGG + tig0035604:5987-6006 None:intergenic 45.0%
AGAGGAAGGGCTTTCTTCAT+TGG + tig0035604:5993-6012 None:intergenic 45.0%
GGGTAGAAAAAGCAGAGGAA+GGG + tig0035604:6006-6025 None:intergenic 45.0%
TCAAAAAACCCTGCAGTACC+TGG - tig0035604:6547-6566 Msa1455180:CDS 45.0%
!! CAAAGATCAGGTTGGTCTGA+AGG + tig0035604:6655-6674 None:intergenic 45.0%
CTTCAGACCAACCTGATCTT+TGG - tig0035604:6653-6672 Msa1455180:intron 45.0%
CCCATCAATCTCCAAAGATC+AGG + tig0035604:6667-6686 None:intergenic 45.0%
TGATGGGAATGTGGTCCATT+TGG - tig0035604:6680-6699 Msa1455180:intron 45.0%
CAATCCTCGTCTTACAAGTC+TGG + tig0035604:7073-7092 None:intergenic 45.0%
TGTAAGACGAGGATTGCCTT+AGG - tig0035604:7077-7096 Msa1455180:intron 45.0%
GAAGGAGCTGGAACAACTAT+TGG + tig0035604:7184-7203 None:intergenic 45.0%
TAGATCTTGCAAGAAGGAGC+TGG + tig0035604:7196-7215 None:intergenic 45.0%
CAACATTGAGCAAGGGAACT+AGG + tig0035604:7352-7371 None:intergenic 45.0%
GGGATTGCAACATTGAGCAA+GGG + tig0035604:7359-7378 None:intergenic 45.0%
TGGGATTGCAACATTGAGCA+AGG + tig0035604:7360-7379 None:intergenic 45.0%
!! GTCCTTTGCTGTTGTTTGGT+CGG - tig0035604:7391-7410 Msa1455180:intron 45.0%
! TCCTTTTCTTGCAGCTTGGA+TGG - tig0035604:7593-7612 Msa1455180:intron 45.0%
AAAGAGTTAACCGCCAGGTT+GGG + tig0035604:7641-7660 None:intergenic 45.0%
AAGGATGAAAGAATTCGGCG+TGG - tig0035604:7774-7793 Msa1455180:intron 45.0%
!! CTAGTAGACACAAAAGCACC+TGG + tig0035604:7805-7824 None:intergenic 45.0%
! CAGGTGCTTTTGTGTCTACT+AGG - tig0035604:7803-7822 Msa1455180:intron 45.0%
TGTGTCTACTAGGGAGTTAG+AGG - tig0035604:7813-7832 Msa1455180:intron 45.0%
ACTAGGGAGTTAGAGGTCAA+AGG - tig0035604:7820-7839 Msa1455180:intron 45.0%
TGTGAGGTGGAGTAGTGACT+AGG + tig0035604:5700-5719 None:intergenic 50.0%
! CGAGGATGGTGATGAGAAGA+TGG + tig0035604:5734-5753 None:intergenic 50.0%
TGTCATCGGAAACTCGAGGA+TGG + tig0035604:5748-5767 None:intergenic 50.0%
! AAGGGTAGGGTACCCTACAA+AGG + tig0035604:5835-5854 None:intergenic 50.0%
ACCCTACCCTTTAGTCTCTC+CGG - tig0035604:5844-5863 Msa1455180:three_prime_UTR 50.0%
ACCGGAGAGACTAAAGGGTA+GGG + tig0035604:5848-5867 None:intergenic 50.0%
AACCGGAGAGACTAAAGGGT+AGG + tig0035604:5849-5868 None:intergenic 50.0%
GGGATAAGGTGAGCGTCTTA+AGG + tig0035604:5909-5928 None:intergenic 50.0%
GTGGCACATGCAATGGGATA+AGG + tig0035604:5923-5942 None:intergenic 50.0%
GGGGTAGAAAAAGCAGAGGA+AGG + tig0035604:6007-6026 None:intergenic 50.0%
TTTGATGCTGTCGAAGCCCT+CGG + tig0035604:6532-6551 None:intergenic 50.0%
! AGGTACTTCCAGGTACTGCA+GGG + tig0035604:6558-6577 None:intergenic 50.0%
! AAGGTACTTCCAGGTACTGC+AGG + tig0035604:6559-6578 None:intergenic 50.0%
CATTGAGCAAGGGAACTAGG+AGG + tig0035604:7349-7368 None:intergenic 50.0%
TGCCGACCAAACAACAGCAA+AGG + tig0035604:7396-7415 None:intergenic 50.0%
GCCATCCAAGCTGCAAGAAA+AGG + tig0035604:7597-7616 None:intergenic 50.0%
GCTTGGATGGCTCCAGAAAA+CGG - tig0035604:7606-7625 Msa1455180:intron 50.0%
! GGGTCAACTAGTCCGTTTTC+TGG + tig0035604:7621-7640 None:intergenic 50.0%
CAAAGAGTTAACCGCCAGGT+TGG + tig0035604:7642-7661 None:intergenic 50.0%
CCTTCAAAGAGTTAACCGCC+AGG + tig0035604:7646-7665 None:intergenic 50.0%
CCTGGCGGTTAACTCTTTGA+AGG - tig0035604:7643-7662 Msa1455180:intron 50.0%
GAATTCGGCGTGGAAATTCC+AGG - tig0035604:7784-7803 Msa1455180:intron 50.0%
AGCTGCAACCTTTGCACCGA+GGG - tig0035604:6513-6532 Msa1455180:CDS 55.0%
CAATCTCGAGCTCGCAAGGA+AGG + tig0035604:7290-7309 None:intergenic 55.0%
TGAGCAATCTCGAGCTCGCA+AGG + tig0035604:7294-7313 None:intergenic 55.0%
!! ACGGACTAGTTGACCCAACC+TGG - tig0035604:7625-7644 Msa1455180:intron 55.0%
! GACTAGTTGACCCAACCTGG+CGG - tig0035604:7628-7647 Msa1455180:intron 55.0%
CAGCTGCAACCTTTGCACCG+AGG - tig0035604:6512-6531 Msa1455180:CDS 60.0%
! TGTCGAAGCCCTCGGTGCAA+AGG + tig0035604:6524-6543 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
tig0035604 gene 5622 8249 5622 ID=Msa1455180;Name=Msa1455180
tig0035604 mRNA 5622 8249 5622 ID=Msa1455180-mRNA-1;Parent=Msa1455180;Name=Msa1455180-mRNA-1;_AED=0.10;_eAED=0.10;_QI=49|1|1|1|1|1|4|616|261
tig0035604 exon 5622 6264 5622 ID=Msa1455180-mRNA-1:exon:20168;Parent=Msa1455180-mRNA-1
tig0035604 exon 6420 6589 6420 ID=Msa1455180-mRNA-1:exon:20167;Parent=Msa1455180-mRNA-1
tig0035604 exon 7162 7372 7162 ID=Msa1455180-mRNA-1:exon:20166;Parent=Msa1455180-mRNA-1
tig0035604 exon 7823 8249 7823 ID=Msa1455180-mRNA-1:exon:20165;Parent=Msa1455180-mRNA-1
tig0035604 five_prime_UTR 8201 8249 8201 ID=Msa1455180-mRNA-1:five_prime_utr;Parent=Msa1455180-mRNA-1
tig0035604 CDS 7823 8200 7823 ID=Msa1455180-mRNA-1:cds;Parent=Msa1455180-mRNA-1
tig0035604 CDS 7162 7372 7162 ID=Msa1455180-mRNA-1:cds;Parent=Msa1455180-mRNA-1
tig0035604 CDS 6420 6589 6420 ID=Msa1455180-mRNA-1:cds;Parent=Msa1455180-mRNA-1
tig0035604 CDS 6238 6264 6238 ID=Msa1455180-mRNA-1:cds;Parent=Msa1455180-mRNA-1
tig0035604 three_prime_UTR 5622 6237 5622 ID=Msa1455180-mRNA-1:three_prime_utr;Parent=Msa1455180-mRNA-1
Gene Sequence

>Msa1455180

ATGTTTGAACACATCATTGCGGCGTTCCTAGTCACTACTCCACCTCACATTCCTTATCTTCCATCTTCTCATCACCATCCTCGAGTTTCCGATGACAACTTAATTTCCAAACCCCTCCCAAAAGAAAAGATGAACACTTTAATCTATTCTTCAAACCATTACCTTTGTAGGGTACCCTACCCTTTAGTCTCTCCGGTTCTAACCAACAAAACCAACCTTCCAAAGTTCCTTTCAACCTTAAGACGCTCACCTTATCCCATTGCATGTGCCACTTCAAATGAAGAAGTTGCAGAAGAGATTAAAGTAGTTGAATCCAACACCAATGAAGAAAGCCCTTCCTCTGCTTTTTCTACCCCAATAGACAAAGAACTTAAAAAGGTGGCTCAGAAGACAGCTGCAACCTTTGCACCGAGGGCTTCGACAGCATCAAAAAACCCTGCAGTACCTGGAAGTACCTTGTATACTGTTTTCGAAGTTCAAGCGTATGTATCAATGTTGTTGGGTGGAGCTTTGTCTTTTAATCTCATTTTCCCTTCAGACCAACCTGATCTTTGGAGATTGATGGGAATGTGGTCCATTTGGATGTTCACAATTCCTTCCTTGCGAGCTCGAGATTGCTCAAAGAATGAGAAAGAAGCTCTCAACTATCTTTTCCTCCTAGTTCCCTTGCTCAATGTTGCAATCCCATTCTTTTTGAAGTCCTTTGCTGTTGTTTGGTCGGCAGATATAATAGCTTTCTTTGGAATGTATGCATGGAAGCTTGGATGGCTCCAGAAAACGGACTAG

Protein sequence

>Msa1455180

MFEHIIAAFLVTTPPHIPYLPSSHHHPRVSDDNLISKPLPKEKMNTLIYSSNHYLCRVPYPLVSPVLTNKTNLPKFLSTLRRSPYPIACATSNEEVAEEIKVVESNTNEESPSSAFSTPIDKELKKVAQKTAATFAPRASTASKNPAVPGSTLYTVFEVQAYVSMLLGGALSFNLIFPSDQPDLWRLMGMWSIWMFTIPSLRARDCSKNEKEALNYLFLLVPLLNVAIPFFLKSFAVVWSADIIAFFGMYAWKLGWLQKTD*