AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0131230

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0131230 MtrunA17_Chr1g0199921 97.333 825 15 2 1 819 1 824 0.0 1644
Msa0131230 MtrunA17_Chr4g0012061 34.851 505 294 10 133 628 100 578 1.01e-85 287
Msa0131230 MtrunA17_Chr1g0148121 36.484 455 262 8 198 642 134 571 2.70e-82 276
Msa0131230 MtrunA17_Chr3g0136721 33.772 456 269 5 198 642 138 571 1.33e-81 276
Msa0131230 MtrunA17_Chr6g0465161 33.925 507 300 9 111 616 56 528 3.73e-81 275
Msa0131230 MtrunA17_Chr7g0230671 34.990 503 294 11 134 628 89 566 1.56e-77 265
Msa0131230 MtrunA17_Chr1g0169361 31.697 489 302 6 127 612 126 585 1.23e-76 264
Msa0131230 MtrunA17_Chr8g0382921 34.889 450 236 13 198 613 198 624 1.75e-60 218
Msa0131230 MtrunA17_Chr3g0129101 34.368 419 229 8 198 584 207 611 2.65e-58 212
Msa0131230 MtrunA17_Chr3g0120791 29.717 424 282 4 198 618 204 614 1.40e-51 192
Msa0131230 MtrunA17_Chr5g0428451 27.021 433 256 12 172 560 89 505 3.11e-32 132
Msa0131230 MtrunA17_Chr5g0433911 31.325 249 150 5 209 454 77 307 1.20e-25 112
Msa0131230 MtrunA17_Chr1g0147481 27.049 366 226 12 174 523 104 444 4.37e-22 102
Msa0131230 MtrunA17_Chr4g0057941 24.096 415 277 12 204 600 77 471 1.01e-20 96.3
Msa0131230 MtrunA17_Chr8g0360981 28.013 307 170 7 197 472 209 495 6.38e-19 91.7
Msa0131230 MtrunA17_Chr2g0281061 26.331 338 213 6 197 513 217 539 3.18e-18 89.4
Msa0131230 MtrunA17_Chr3g0113361 25.984 254 166 6 198 444 90 328 5.08e-17 85.1
Msa0131230 MtrunA17_Chr1g0193751 29.329 283 166 8 210 482 242 500 1.10e-16 84.3
Msa0131230 MtrunA17_Chr4g0048521 27.458 295 167 7 197 463 220 495 2.78e-15 80.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0131230 AT2G39190.2 57.927 820 311 7 1 804 1 802 0.0 959
Msa0131230 AT2G39190.1 58.537 369 133 3 1 357 1 361 8.61e-145 431
Msa0131230 AT5G24970.3 37.844 436 233 4 198 612 140 558 2.51e-89 298
Msa0131230 AT5G24970.2 37.844 436 233 4 198 612 179 597 5.48e-89 298
Msa0131230 AT5G24970.1 37.385 436 232 5 198 612 140 555 1.74e-85 287
Msa0131230 AT1G79600.1 33.673 490 296 8 134 620 96 559 2.80e-83 281
Msa0131230 AT4G31390.1 37.204 422 247 5 198 616 170 576 6.64e-82 277
Msa0131230 AT1G71810.1 32.661 545 318 11 80 616 16 519 4.15e-79 269
Msa0131230 AT3G24190.1 32.305 486 297 6 130 612 137 593 4.84e-79 271
Msa0131230 AT4G31390.2 35.782 422 228 6 198 616 170 551 8.63e-74 254
Msa0131230 AT4G31390.3 35.768 397 237 5 231 624 4 385 1.12e-71 243
Msa0131230 AT5G64940.1 33.017 421 234 9 198 584 222 628 6.07e-55 203
Msa0131230 AT5G64940.2 33.017 421 234 9 198 584 222 628 6.07e-55 203
Msa0131230 AT3G07700.1 30.287 383 253 3 198 579 193 562 2.02e-50 189
Msa0131230 AT3G07700.2 30.287 383 253 3 198 579 193 562 2.02e-50 189
Msa0131230 AT3G07700.4 30.287 383 253 3 198 579 193 562 2.02e-50 189
Msa0131230 AT3G07700.3 30.024 413 244 7 198 579 193 591 5.67e-49 185
Msa0131230 AT5G05200.1 28.184 369 231 9 172 520 90 444 1.55e-31 130
Msa0131230 AT4G24810.5 29.545 264 177 5 204 463 31 289 4.27e-24 104
Msa0131230 AT4G24810.4 29.545 264 177 5 204 463 31 289 5.42e-24 103
Msa0131230 AT4G24810.2 25.876 371 255 9 204 565 74 433 2.39e-23 105
Msa0131230 AT4G24810.6 25.876 371 255 9 204 565 31 390 2.55e-23 104
Msa0131230 AT4G24810.1 25.876 371 255 9 204 565 31 390 2.55e-23 104
Msa0131230 AT5G50330.1 26.846 298 205 7 204 495 74 364 1.14e-22 102
Msa0131230 AT4G24810.3 25.397 378 255 10 204 565 31 397 1.43e-21 99.0
Msa0131230 AT5G24810.1 26.836 354 216 11 187 523 91 418 1.22e-20 98.2
Msa0131230 AT1G65950.2 30.078 256 156 6 209 458 113 351 6.65e-20 94.0
Msa0131230 AT1G65950.1 30.078 256 156 6 209 458 113 351 1.90e-19 93.6
Msa0131230 AT1G61640.1 29.110 292 169 7 197 465 212 488 4.23e-19 92.8
Msa0131230 AT1G61640.3 29.110 292 169 7 197 465 212 488 4.43e-19 92.4
Msa0131230 AT5G50330.2 24.662 296 198 6 204 495 74 348 3.64e-18 89.0
Msa0131230 AT2G40090.1 26.266 316 187 9 198 494 92 380 1.04e-17 87.8
Msa0131230 AT4G01660.1 29.528 254 155 6 210 458 240 474 1.93e-17 87.4
Msa0131230 AT5G24810.2 25.195 385 214 12 187 523 91 449 1.25e-16 85.5
Msa0131230 AT1G11390.1 28.082 292 172 6 197 465 215 491 1.71e-16 84.3
Msa0131230 AT1G61640.2 28.505 214 138 3 197 398 212 422 1.38e-12 71.2

Find 248 sgRNAs with CRISPR-Local

Find 759 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AAAACATCTGAATATAATTT+TGG 0.070427 1_3:+61984464 Msa0131230:CDS
CGCTTAGGTGCATCGAATAT+TGG 0.197319 1_3:-61991953 None:intergenic
GATAATATTGTTCTCTCTTT+TGG 0.225573 1_3:-61992031 None:intergenic
CTTGGCCCCACATTTATAAA+AGG 0.243307 1_3:+61984515 Msa0131230:CDS
AATGTACCAGCGGCCTTATT+TGG 0.251143 1_3:-61990842 None:intergenic
AACAAAGTCATCAACTTTCT+TGG 0.258309 1_3:-61981775 None:intergenic
AAGATTCTTGAGGAAGAATT+AGG 0.261394 1_3:+61985164 Msa0131230:CDS
ATATCCCCTTCTGCATTTAT+TGG 0.267924 1_3:-61984434 None:intergenic
TGAATATTCAGTAGAGTTTC+CGG 0.271670 1_3:-61986014 None:intergenic
AAGAAGAATCATTCGAATTT+CGG 0.277484 1_3:+61981651 Msa0131230:CDS
TGCACTTCATCAGGAGAAAT+AGG 0.278748 1_3:+61986600 Msa0131230:CDS
TCTCAAAGCGACACCATCTT+TGG 0.295707 1_3:-61990900 None:intergenic
ATATCTACATTCTTCGCCTT+GGG 0.302444 1_3:+61985453 Msa0131230:CDS
TCTATCATTTGTCTAAGATT+TGG 0.302633 1_3:+61983050 Msa0131230:CDS
CGCCTTTATGCTGATGAGCT+TGG 0.302788 1_3:+61985613 Msa0131230:CDS
TCAGGAACTGGAACAGGCCT+TGG 0.303137 1_3:+61987034 Msa0131230:intron
GCGGTCAGTATTCGGACTTC+AGG 0.303213 1_3:+61984395 Msa0131230:CDS
CCCCGATCAATCACCAAATA+AGG 0.305779 1_3:+61990829 Msa0131230:CDS
GTCGCTGTCTGAGGCTTACC+TGG 0.312293 1_3:+61991928 Msa0131230:CDS
CAGCAAATGCATTGAAGTTT+CGG 0.313861 1_3:+61985674 Msa0131230:CDS
ACCACCACGTGCCGCAAATT+AGG 0.319993 1_3:-61985425 None:intergenic
CCTCTGCTGCGGTCAGTATT+CGG 0.326971 1_3:+61984387 Msa0131230:CDS
TGTCAACGCTCTGATTGATA+TGG 0.326993 1_3:+61986812 Msa0131230:CDS
TCCTGAGGATCATAAGTTTC+AGG 0.329741 1_3:-61983085 None:intergenic
TACTTTGCCCGTACTATTGA+TGG 0.330351 1_3:+61985374 Msa0131230:CDS
ATTTAGAGATCGGCGACTTC+GGG 0.332080 1_3:+61991784 Msa0131230:CDS
CAGGAACTGGAACAGGCCTT+GGG 0.332682 1_3:+61987035 Msa0131230:intron
CGGAAAATTCAGGTCAATAA+AGG 0.332703 1_3:+61986504 Msa0131230:intron
GCTTAGGTGCATCGAATATT+GGG 0.343164 1_3:-61991952 None:intergenic
GCCTTTATGCTGATGAGCTT+GGG 0.344950 1_3:+61985614 Msa0131230:CDS
AGGAGGATAGCATTATCTTT+TGG 0.344966 1_3:+61992118 Msa0131230:three_prime_UTR
AAGGAAACAATGCTTAATCT+TGG 0.346515 1_3:+61984497 Msa0131230:CDS
AATAAATGCAGAAGGGGATA+TGG 0.349276 1_3:+61984436 Msa0131230:CDS
CGAGCTTTGTCCGGATCATA+TGG 0.352141 1_3:+61992493 Msa0131230:three_prime_UTR
CGCTCTGATTGATATGGATA+TGG 0.356251 1_3:+61986818 Msa0131230:CDS
AGAAAGTTGATGACTTTGTT+TGG 0.358358 1_3:+61981778 Msa0131230:CDS
GCCTTATTTGGTGATTGATC+GGG 0.365408 1_3:-61990830 None:intergenic
AAGTCGCCGATCTCTAAATA+AGG 0.366706 1_3:-61991780 None:intergenic
TGAATTGGATTACACTTTAG+AGG 0.372142 1_3:+61985651 Msa0131230:CDS
CTCCTTCTTGGCCTGAGCCT+TGG 0.373407 1_3:+61981841 Msa0131230:CDS
AGCAAATGCATTGAAGTTTC+GGG 0.373912 1_3:+61985675 Msa0131230:CDS
TGGCCTGAGCCTTGGTATCC+AGG 0.374120 1_3:+61981849 Msa0131230:CDS
GTCGTTGTGGCCCGTACAAA+GGG 0.379758 1_3:-61981609 None:intergenic
AGAAAATTAAGAGTTGATCT+TGG 0.382686 1_3:+61992381 Msa0131230:three_prime_UTR
CTCCGTCACTCCCCTTTGTA+CGG 0.383374 1_3:+61981598 Msa0131230:CDS
ATGAAACTATACATACTTGT+AGG 0.383480 1_3:-61992219 None:intergenic
GAGGGTAAAATATGTGGTAT+AGG 0.387132 1_3:+61992098 Msa0131230:three_prime_UTR
ATCTCAACACCAATGATATC+TGG 0.388598 1_3:-61984763 None:intergenic
TTGAATCGGTCCTATGTAGA+TGG 0.389192 1_3:+61992316 Msa0131230:three_prime_UTR
CCTGTAGCCGCTGCATCATT+TGG 0.392651 1_3:+61985227 Msa0131230:CDS
CCAAGGGTGATGTTGGCTAA+TGG 0.399467 1_3:+61991695 Msa0131230:CDS
TCAACTTTCTTGGCAATTTG+AGG 0.413329 1_3:-61981765 None:intergenic
AGGAATGCGGAATGCATCAT+TGG 0.415328 1_3:-61981745 None:intergenic
CTATGACCTTGCAAAGTTGT+TGG 0.416875 1_3:-61991610 None:intergenic
GGCCTTATTTGGTGATTGAT+CGG 0.417516 1_3:-61990831 None:intergenic
TTGGTTCAACTTCTTGAAAC+GGG 0.421020 1_3:+61986540 Msa0131230:CDS
TATTTAGAGATCGGCGACTT+CGG 0.421417 1_3:+61991783 Msa0131230:CDS
GCACTTCATCAGGAGAAATA+GGG 0.422863 1_3:+61986601 Msa0131230:CDS
TTCATATAGTAAACGGTGAC+TGG 0.422996 1_3:+61986781 Msa0131230:CDS
GGAACTAGCAACAAAGAATC+TGG 0.428994 1_3:+61991716 Msa0131230:CDS
TGCAAATGCAAAACAAATCA+TGG 0.431494 1_3:-61992410 None:intergenic
AACTTGCGCTGCACTTCATC+AGG 0.431810 1_3:+61986591 Msa0131230:CDS
GCCCAAGCTCATCAGCATAA+AGG 0.431876 1_3:-61985615 None:intergenic
CATTCGAATTTCGGTCACTT+TGG 0.432460 1_3:+61981660 Msa0131230:CDS
AGAAGTTTCCGAACGACGTA+GGG 0.435307 1_3:-61988210 None:intergenic
AATCATTACAGCTTCAGCTT+TGG 0.437545 1_3:+61991886 Msa0131230:CDS
CCAAATGATGCAGCGGCTAC+AGG 0.437648 1_3:-61985227 None:intergenic
TTCAGCTTTGGCAAGCCATC+GGG 0.439915 1_3:+61991898 Msa0131230:CDS
CTGCCTACCCCTACGTCGTT+CGG 0.442748 1_3:+61988202 Msa0131230:CDS
GATATCTACATTCTTCGCCT+TGG 0.445130 1_3:+61985452 Msa0131230:CDS
TTCTTCTTCTTCTTACTGGA+CGG 0.447474 1_3:-61981633 None:intergenic
TTTCCATGTTCTTGAGAGTA+GGG 0.450283 1_3:+61988646 Msa0131230:CDS
TCAATAGTTCATATAGTAAA+CGG 0.452061 1_3:+61986774 Msa0131230:CDS
CTTCAGCTTTGGCAAGCCAT+CGG 0.453322 1_3:+61991897 Msa0131230:CDS
TTAGTTATTAATCTTTGAAT+CGG 0.453635 1_3:+61992302 Msa0131230:three_prime_UTR
AGAGAAGTGATTGGTAGAAG+TGG 0.453650 1_3:-61981443 None:intergenic
GCCTGAAACTTATGATCCTC+AGG 0.454026 1_3:+61983084 Msa0131230:CDS
CGGTCAGTATTCGGACTTCA+GGG 0.454624 1_3:+61984396 Msa0131230:CDS
ATTGGTTCAACTTCTTGAAA+CGG 0.457244 1_3:+61986539 Msa0131230:CDS
CATGTATGATCTGAAGGCCT+TGG 0.459446 1_3:+61983009 Msa0131230:CDS
AACAAGGAAAATATTGCATT+CGG 0.460309 1_3:+61988251 Msa0131230:CDS
GGGCGGAGAGTGAAGAAGAT+TGG 0.463208 1_3:-61981556 None:intergenic
AAGTTCAGCGTCCTAATTTG+CGG 0.464669 1_3:+61985414 Msa0131230:CDS
AAGGCATCAATTCGCTATGC+TGG 0.464750 1_3:+61986749 Msa0131230:CDS
TTTGCGGCACGTGGTGGTGC+GGG 0.465918 1_3:+61985430 Msa0131230:CDS
TTCCTGATGTGAAGTTCAGC+AGG 0.467694 1_3:+61987081 Msa0131230:CDS
GACATGGAGTTTCTTAAAAG+AGG 0.468586 1_3:+61981699 Msa0131230:CDS
CAACAGTTTACCTTCGAAAG+AGG 0.469059 1_3:-61987974 None:intergenic
GCGAGGGTCACTCTTTCTCT+TGG 0.472103 1_3:-61985593 None:intergenic
CGTCGTTGTGGCCCGTACAA+AGG 0.473173 1_3:-61981610 None:intergenic
TCCACGAGGCCAGATATCAT+TGG 0.474665 1_3:+61984754 Msa0131230:CDS
ACATGGAAAGCCTTTGCCAT+TGG 0.476595 1_3:-61988632 None:intergenic
ACTCTACTGAATATTCAGAT+AGG 0.478793 1_3:+61986020 Msa0131230:CDS
TATTGTTGCAGTTCAGATCC+AGG 0.483960 1_3:+61992193 Msa0131230:three_prime_UTR
TCAATATCCAAGGGTGATGT+TGG 0.487445 1_3:+61991688 Msa0131230:CDS
CCTATGTAGATGGACTGATT+TGG 0.487509 1_3:+61992326 Msa0131230:three_prime_UTR
TAGCCGATGCATTGTGTCAA+TGG 0.489855 1_3:+61991630 Msa0131230:CDS
TGAGACCAGGGACAAATATC+CGG 0.490744 1_3:+61986841 Msa0131230:CDS
AAGAGCCACAACATGGGGTC+TGG 0.491274 1_3:-61983128 None:intergenic
AGCCGCTGCATCATTTGGTC+AGG 0.494783 1_3:+61985232 Msa0131230:CDS
GGTGCTGTCACCGTCGCCAT+GGG 0.494929 1_3:-61981576 None:intergenic
AGGTGCTGTCACCGTCGCCA+TGG 0.497583 1_3:-61981577 None:intergenic
TACTGATGCTGCGGTTCTGT+TGG 0.499622 1_3:+61991849 Msa0131230:CDS
GATACAGAGATTAAATCTGT+TGG 0.500752 1_3:-61985989 None:intergenic
ATTTGCGGCACGTGGTGGTG+CGG 0.505284 1_3:+61985429 Msa0131230:CDS
TATGCTGATGAGCTTGGGCG+AGG 0.505625 1_3:+61985619 Msa0131230:CDS
ATATTTCCTTATTTAGAGAT+CGG 0.506293 1_3:+61991774 Msa0131230:CDS
TGAAACTATACATACTTGTA+GGG 0.506365 1_3:-61992218 None:intergenic
CTTTCCATGTTCTTGAGAGT+AGG 0.507675 1_3:+61988645 Msa0131230:CDS
CATTAACACCATCAATAGTA+CGG 0.508937 1_3:-61985382 None:intergenic
CCTTATTTGGTGATTGATCG+GGG 0.510164 1_3:-61990829 None:intergenic
CGGAGAGTGAAGAAGATTGG+AGG 0.512475 1_3:-61981553 None:intergenic
GGATCATAAGTTTCAGGCAG+TGG 0.515375 1_3:-61983079 None:intergenic
ATCAAATCCCTCCCTTTCCT+AGG 0.515438 1_3:+61985129 Msa0131230:CDS
GAAGTGCAGCGCAAGTTACC+AGG 0.517043 1_3:-61986585 None:intergenic
ATCTTCATAGCAACAGTCCT+AGG 0.517132 1_3:-61985146 None:intergenic
TCCTAATTTGCGGCACGTGG+TGG 0.517274 1_3:+61985424 Msa0131230:CDS
GGTGTTGTTGCATGTGAAAG+TGG 0.517465 1_3:-61981487 None:intergenic
TCACTCTCCGCCCATGGCGA+CGG 0.520900 1_3:+61981566 Msa0131230:exon
GGTAAAATATGTGGTATAGG+AGG 0.522026 1_3:+61992101 Msa0131230:three_prime_UTR
ACCCTGCTGAACTTCACATC+AGG 0.522392 1_3:-61987083 None:intergenic
CCATTAGCCAACATCACCCT+TGG 0.523566 1_3:-61991695 None:intergenic
TCCGTCACTCCCCTTTGTAC+GGG 0.523792 1_3:+61981599 Msa0131230:CDS
ACTGCATATCTCTTACGCTT+AGG 0.523975 1_3:-61991968 None:intergenic
GGTTGTTCTGTCGCTGTCTG+AGG 0.527420 1_3:+61991919 Msa0131230:CDS
GGAAGAATTAGGAGCTCCCC+TGG 0.528295 1_3:+61985175 Msa0131230:CDS
GGTACTTCTAAATCGAAAGA+AGG 0.531526 1_3:+61988605 Msa0131230:intron
CAGTGCCAGACCCCATGTTG+TGG 0.532263 1_3:+61983123 Msa0131230:CDS
TTTACCTTCGAAAGAGGCTA+GGG 0.534132 1_3:-61987968 None:intergenic
AAGACAAGTGTATAATATGC+TGG 0.535650 1_3:-61987940 None:intergenic
TTTCGGTCACTTTGGTCAAG+TGG 0.538257 1_3:+61981668 Msa0131230:CDS
CAGCGCAAGTTACCAGGATG+TGG 0.540469 1_3:-61986579 None:intergenic
ATACATACTTGTAGGGTACC+TGG 0.541187 1_3:-61992211 None:intergenic
GTTTACCTTCGAAAGAGGCT+AGG 0.541274 1_3:-61987969 None:intergenic
TCTTGAGAGTAGGGGCAACT+AGG 0.543805 1_3:+61988655 Msa0131230:CDS
TGTATAAGACCCATATGATC+CGG 0.543848 1_3:-61992503 None:intergenic
TAAAGGTGTTGAAGCAACAT+TGG 0.544378 1_3:+61986521 Msa0131230:CDS
AAGGAAATATAATCATATGC+AGG 0.544409 1_3:-61991761 None:intergenic
ATACCTGGATACCAAGGCTC+AGG 0.544507 1_3:-61981852 None:intergenic
TCAAGTGGTTCGCAAGGACA+TGG 0.546032 1_3:+61981683 Msa0131230:CDS
GTGTATAATATGCTGGCATA+CGG 0.548041 1_3:-61987933 None:intergenic
TTTCTACCAATAAATGCAGA+AGG 0.548114 1_3:+61984428 Msa0131230:CDS
TTTGCTCATGTATGATCTGA+AGG 0.548209 1_3:+61983003 Msa0131230:CDS
ATAGCAACAGTCCTAGGAAA+GGG 0.548250 1_3:-61985140 None:intergenic
AGTTCTGACCATGGAGTGGA+TGG 0.549599 1_3:+61985955 Msa0131230:CDS
CTTACTGGACGGCGTCGTTG+TGG 0.551146 1_3:-61981622 None:intergenic
GATTTAATCTCTGTATCTAC+CGG 0.551787 1_3:+61985995 Msa0131230:CDS
TGGAAAACGAAGTAGCTTGA+GGG 0.552817 1_3:-61981818 None:intergenic
GTAACTAGCATATGCTTCCA+AGG 0.559404 1_3:-61983026 None:intergenic
TCTTCTTCACTCTCCGCCCA+TGG 0.559733 1_3:+61981560 Msa0131230:exon
CAATGGATGATTAAATTATG+TGG 0.560480 1_3:+61991647 Msa0131230:CDS
TCGCTGTCTGAGGCTTACCT+GGG 0.560912 1_3:+61991929 Msa0131230:CDS
GCGTCCTAATTTGCGGCACG+TGG 0.562426 1_3:+61985421 Msa0131230:CDS
TACCAAGGCTCAGGCCAAGA+AGG 0.562610 1_3:-61981843 None:intergenic
ATTTGAAGTTACTAGTTGCA+AGG 0.563051 1_3:-61990795 None:intergenic
GCTGTCACCGTCGCCATGGG+CGG 0.563192 1_3:-61981573 None:intergenic
TTCCTCCTTTGCCTCTGCTG+CGG 0.563229 1_3:+61984376 Msa0131230:CDS
CTTAAAAGAGGATTTAACAA+TGG 0.564765 1_3:+61981711 Msa0131230:CDS
GCCCGTACAAAGGGGAGTGA+CGG 0.564993 1_3:-61981600 None:intergenic
TATCTACATTCTTCGCCTTG+GGG 0.565780 1_3:+61985454 Msa0131230:CDS
GTTGTTGATGTGTGGTTGTG+TGG 0.566396 1_3:-61981410 None:intergenic
TTACAGATACTCAATATCCA+AGG 0.566639 1_3:+61991678 Msa0131230:CDS
CCAAATCAGTCCATCTACAT+AGG 0.568195 1_3:-61992326 None:intergenic
ATTAACACCATCAATAGTAC+GGG 0.568220 1_3:-61985381 None:intergenic
ACTGACCGCAGCAGAGGCAA+AGG 0.569019 1_3:-61984381 None:intergenic
TGACCTTGCAAAGTTGTTGG+CGG 0.570715 1_3:-61991607 None:intergenic
AAGATGGTGTCGCTTTGAGA+AGG 0.574327 1_3:+61990903 Msa0131230:CDS
TGCGAGGAGGGTAAAATATG+TGG 0.574619 1_3:+61992092 Msa0131230:three_prime_UTR
ATTTAACAATGGTGTTGAGT+GGG 0.578190 1_3:+61981722 Msa0131230:CDS
AAATATCCGGCTTGTTACCA+TGG 0.579205 1_3:+61986854 Msa0131230:CDS
GATATGGATATGGTGAGACC+AGG 0.579982 1_3:+61986828 Msa0131230:CDS
AGGCTCAGGCCAAGAAGGAG+TGG 0.580117 1_3:-61981838 None:intergenic
GTGCATCGAATATTGGGCCC+AGG 0.580938 1_3:-61991946 None:intergenic
TTCCATGTTCTTGAGAGTAG+GGG 0.581214 1_3:+61988647 Msa0131230:CDS
GGGGAAGTGGAATTTAAGGA+TGG 0.582098 1_3:+61987056 Msa0131230:CDS
GAAGGCAATTAGTGCGAGGA+GGG 0.582309 1_3:+61992080 Msa0131230:three_prime_UTR
AATGGTCTCGAAGGAGGGAA+AGG 0.583362 1_3:+61991580 Msa0131230:CDS
AGCTTCAATAATCAGAGCAA+TGG 0.583448 1_3:+61991562 Msa0131230:CDS
ATCGAAAGAAGGAGTTCCAA+TGG 0.583885 1_3:+61988616 Msa0131230:CDS
GATTTAACAATGGTGTTGAG+TGG 0.584443 1_3:+61981721 Msa0131230:CDS
TTCTACCAATAAATGCAGAA+GGG 0.585527 1_3:+61984429 Msa0131230:CDS
TAGAAGTTTCCGAACGACGT+AGG 0.587156 1_3:-61988211 None:intergenic
CAATCACCAAATAAGGCCGC+TGG 0.587455 1_3:+61990836 Msa0131230:CDS
AATGCAAAACAAATCATGGA+TGG 0.588081 1_3:-61992406 None:intergenic
TTTCCGAACGACGTAGGGGT+AGG 0.589875 1_3:-61988205 None:intergenic
TGTTGCTATGAAGATTCTTG+AGG 0.590651 1_3:+61985154 Msa0131230:CDS
CTTTGGTCAAGTGGTTCGCA+AGG 0.590685 1_3:+61981677 Msa0131230:CDS
TCTTGGCAATTTGAGGAATG+CGG 0.592196 1_3:-61981758 None:intergenic
CGATCCCTAGCCTCTTTCGA+AGG 0.594467 1_3:+61987964 Msa0131230:CDS
TAGTGTGAGTTGTTGATGTG+TGG 0.594689 1_3:-61981418 None:intergenic
CATCCGCCAACAACTTTGCA+AGG 0.595666 1_3:+61991604 Msa0131230:CDS
CAGAGCAATGGTCTCGAAGG+AGG 0.596020 1_3:+61991574 Msa0131230:CDS
TCATATAGTAAACGGTGACT+GGG 0.596520 1_3:+61986782 Msa0131230:CDS
ACCAATGATATCTGGCCTCG+TGG 0.597219 1_3:-61984755 None:intergenic
TCTACCAATAAATGCAGAAG+GGG 0.597799 1_3:+61984430 Msa0131230:CDS
CATAGCAACAGTCCTAGGAA+AGG 0.598441 1_3:-61985141 None:intergenic
AGAAGGAGTTCCAATGGCAA+AGG 0.601481 1_3:+61988622 Msa0131230:CDS
ATTATACCATGGTAACAAGC+CGG 0.601997 1_3:-61986860 None:intergenic
GCATACGAAGAGCCACAACA+TGG 0.602003 1_3:-61983135 None:intergenic
AGCTCATCAGCATAAAGGCG+AGG 0.602089 1_3:-61985610 None:intergenic
ACAAGCCGGATATTTGTCCC+TGG 0.605368 1_3:-61986846 None:intergenic
AGGAACTGGAACAGGCCTTG+GGG 0.606066 1_3:+61987036 Msa0131230:intron
GGAACTGGAACAGGCCTTGG+GGG 0.606857 1_3:+61987037 Msa0131230:intron
TTCACCGACCATCCACTCCA+TGG 0.607884 1_3:-61985963 None:intergenic
TGCCCCTACTCTCAAGAACA+TGG 0.608994 1_3:-61988649 None:intergenic
CAGAAAACTCAGCCGCAACA+AGG 0.609737 1_3:+61988235 Msa0131230:CDS
ATACACGCCGATCCACATCC+TGG 0.610436 1_3:+61986567 Msa0131230:CDS
TGATTGTGAAGAGAAGTGAT+TGG 0.610850 1_3:-61981452 None:intergenic
AATCAGAGCAATGGTCTCGA+AGG 0.613050 1_3:+61991571 Msa0131230:CDS
GTGGAAAACGAAGTAGCTTG+AGG 0.615242 1_3:-61981819 None:intergenic
CCGAATACTGACCGCAGCAG+AGG 0.615782 1_3:-61984387 None:intergenic
GTCATAAAATACTGATGCTG+CGG 0.615922 1_3:+61991840 Msa0131230:CDS
AGAGCAATGGTCTCGAAGGA+GGG 0.617538 1_3:+61991575 Msa0131230:CDS
GTGGAATACATTTACCACAC+TGG 0.619146 1_3:-61981334 None:intergenic
CATTGGTGTTGAGATGTCCA+AGG 0.619866 1_3:+61984771 Msa0131230:CDS
AAGCTGTAATGATTATAACA+AGG 0.621418 1_3:-61991877 None:intergenic
AGCTGTAATGATTATAACAA+GGG 0.623250 1_3:-61991876 None:intergenic
TGCAATATCAAATGTACCAG+CGG 0.626529 1_3:-61990852 None:intergenic
AGAGAGTTCTGACCATGGAG+TGG 0.628466 1_3:+61985951 Msa0131230:CDS
GACCGCAGCAGAGGCAAAGG+AGG 0.629609 1_3:-61984378 None:intergenic
GCAACAGTCCTAGGAAAGGG+AGG 0.630043 1_3:-61985137 None:intergenic
ATGATTAAATTATGTGGACA+AGG 0.630789 1_3:+61991653 Msa0131230:CDS
AAAGCGACACCATCTTTGGA+TGG 0.633807 1_3:-61990896 None:intergenic
ATTTCTCATGTTGACCAGTG+TGG 0.635075 1_3:+61981320 Msa0131230:five_prime_UTR
AAATAGTGAGCGACATCCTG+AGG 0.636549 1_3:-61983100 None:intergenic
CAAGTTACCAGGATGTGGAT+CGG 0.641080 1_3:-61986574 None:intergenic
CAACAGTCCTAGGAAAGGGA+GGG 0.641535 1_3:-61985136 None:intergenic
TGAAGGCAATTAGTGCGAGG+AGG 0.642025 1_3:+61992079 Msa0131230:three_prime_UTR
CTTTGAAGGCAATTAGTGCG+AGG 0.643967 1_3:+61992076 Msa0131230:three_prime_UTR
GCTCATCAGCATAAAGGCGA+GGG 0.644522 1_3:-61985609 None:intergenic
CAATTTCATCAACTTAACTG+TGG 0.647229 1_3:-61981353 None:intergenic
GGTATTATACCTGGATACCA+AGG 0.648103 1_3:-61981858 None:intergenic
CATCCATTGACACAATGCAT+CGG 0.650171 1_3:-61991633 None:intergenic
TACAGATACTCAATATCCAA+GGG 0.650600 1_3:+61991679 Msa0131230:CDS
GAAGTTTCCGAACGACGTAG+GGG 0.653962 1_3:-61988209 None:intergenic
CGTACAAAGGGGAGTGACGG+AGG 0.654757 1_3:-61981597 None:intergenic
CATACGAAGAGCCACAACAT+GGG 0.657120 1_3:-61983134 None:intergenic
ATACGAAGAGCCACAACATG+GGG 0.666082 1_3:-61983133 None:intergenic
TACCTGACCAAATGATGCAG+CGG 0.666204 1_3:-61985234 None:intergenic
CTTATTTGGTGATTGATCGG+GGG 0.668914 1_3:-61990828 None:intergenic
TGTGGCTCTTCGTATGCTCG+AGG 0.672887 1_3:+61983141 Msa0131230:CDS
TCCTGATGTGAAGTTCAGCA+GGG 0.675998 1_3:+61987082 Msa0131230:CDS
CTGACCATGGAGTGGATGGT+CGG 0.681835 1_3:+61985959 Msa0131230:CDS
TCGAAAGAGAGTTCTGACCA+TGG 0.684841 1_3:+61985946 Msa0131230:CDS
ATATGGATATGGTGAGACCA+GGG 0.688201 1_3:+61986829 Msa0131230:CDS
TCGTTGTGGCCCGTACAAAG+GGG 0.704631 1_3:-61981608 None:intergenic
ACAGCGACAGAACAACCCGA+TGG 0.722304 1_3:-61991913 None:intergenic
TTGGTCAGTCACTTTCCACG+AGG 0.748373 1_3:+61984740 Msa0131230:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AAAAATTCAATTTTTTTTCT+TGG - chr1_3:61981882-61981901 None:intergenic 10.0%
!!! CATTTTTTTTTTTAAACTTT+TGG + chr1_3:61982756-61982775 Msa0131230:intron 10.0%
!! AATGGTATATAATTATATAT+AGG + chr1_3:61983392-61983411 Msa0131230:intron 10.0%
!! ATGGTATATAATTATATATA+GGG + chr1_3:61983393-61983412 Msa0131230:intron 10.0%
!!! ATTTTCAAAATAAAAGAAAA+AGG - chr1_3:61983539-61983558 None:intergenic 10.0%
!! ATCTATCAAAAATTTAATAT+AGG - chr1_3:61984272-61984291 None:intergenic 10.0%
!! AATAAATAAAGAATAGTAAT+GGG - chr1_3:61984601-61984620 None:intergenic 10.0%
!! AAATAAATAAAGAATAGTAA+TGG - chr1_3:61984602-61984621 None:intergenic 10.0%
!!! CTTAAATGTAAAAATATTTT+TGG - chr1_3:61985926-61985945 None:intergenic 10.0%
!! ATACAATCTAAATTATTTAT+TGG + chr1_3:61987997-61988016 Msa0131230:intron 10.0%
!! ACTCATATATAAAATAAAAT+TGG - chr1_3:61989181-61989200 None:intergenic 10.0%
!!! TGTTTTAATCTTTTTAATAA+AGG + chr1_3:61989747-61989766 Msa0131230:intron 10.0%
!!! TTTAATTTTTTCAATTAAGA+GGG - chr1_3:61990060-61990079 None:intergenic 10.0%
!!! TTTTAATTTTTTCAATTAAG+AGG - chr1_3:61990061-61990080 None:intergenic 10.0%
!! TTAATCAAATAATAAACAAT+TGG - chr1_3:61990093-61990112 None:intergenic 10.0%
!! ATGAAATTTATAAAAAAGAA+TGG - chr1_3:61991332-61991351 None:intergenic 10.0%
!!! AAAATTGAATTTTTTGATTG+TGG + chr1_3:61981888-61981907 Msa0131230:intron 15.0%
!!! AAATTGAATTTTTTGATTGT+GGG + chr1_3:61981889-61981908 Msa0131230:intron 15.0%
!!! ATATTTTGAGATATTATAGA+TGG - chr1_3:61983242-61983261 None:intergenic 15.0%
!!! TTTCAAGATTTTGTTTATAA+GGG + chr1_3:61983592-61983611 Msa0131230:intron 15.0%
!! AAAATGAAAATAACTCAATA+AGG - chr1_3:61984346-61984365 None:intergenic 15.0%
!!! TTATTGAGTTATTTTCATTT+TGG + chr1_3:61984345-61984364 Msa0131230:intron 15.0%
!!! AAAACATCTGAATATAATTT+TGG + chr1_3:61984464-61984483 Msa0131230:CDS 15.0%
!!! AAACATCTGAATATAATTTT+GGG + chr1_3:61984465-61984484 Msa0131230:CDS 15.0%
!! AATATAATTACATGAGTAAA+AGG + chr1_3:61986220-61986239 Msa0131230:intron 15.0%
!!! AATTTTCAGTTGAATAATAA+AGG - chr1_3:61986367-61986386 None:intergenic 15.0%
!!! ATTTTTTAAACTTGTATGAT+AGG + chr1_3:61986691-61986710 Msa0131230:intron 15.0%
!! CATATAAGAATGTTATTATT+TGG - chr1_3:61986930-61986949 None:intergenic 15.0%
!!! TTATTCTATGTTTTATTTTC+AGG + chr1_3:61987016-61987035 Msa0131230:intron 15.0%
!! AAGAATAAAACATTTCTATT+AGG + chr1_3:61987276-61987295 Msa0131230:intron 15.0%
!! TGATACAAAATAATGTATAT+AGG - chr1_3:61988052-61988071 None:intergenic 15.0%
!! TTATGTTAAGAAAAATTGAT+AGG + chr1_3:61989286-61989305 Msa0131230:intron 15.0%
!! TATGTTAAGAAAAATTGATA+GGG + chr1_3:61989287-61989306 Msa0131230:intron 15.0%
!!! AATGAGAGAATTTTTTTTTA+AGG - chr1_3:61989442-61989461 None:intergenic 15.0%
!!! ATTTGGTTATGATTATTTTT+TGG + chr1_3:61989564-61989583 Msa0131230:intron 15.0%
!!! TTATGATTATTTTTTGGTTT+TGG + chr1_3:61989570-61989589 Msa0131230:intron 15.0%
!!! AAAATGGATTTATGTATTTT+TGG + chr1_3:61989645-61989664 Msa0131230:intron 15.0%
!!! AAATGGATTTATGTATTTTT+GGG + chr1_3:61989646-61989665 Msa0131230:intron 15.0%
!!! TTAATCTTTTTAATAAAGGA+AGG + chr1_3:61989751-61989770 Msa0131230:intron 15.0%
!! TATAACATAAATGAGTAAAT+CGG + chr1_3:61989792-61989811 Msa0131230:intron 15.0%
!! TAAATTAAGTTAAAGTTGTT+TGG - chr1_3:61989882-61989901 None:intergenic 15.0%
!!! GTTTGTTTATTTGTTATATA+TGG + chr1_3:61991094-61991113 Msa0131230:intron 15.0%
!! AAATTTATAAAAAAGAATGG+AGG - chr1_3:61991329-61991348 None:intergenic 15.0%
!! TTAGTTATTAATCTTTGAAT+CGG + chr1_3:61992302-61992321 Msa0131230:three_prime_UTR 15.0%
!!! AATTGAATTTTTTGATTGTG+GGG + chr1_3:61981890-61981909 Msa0131230:intron 20.0%
!!! ATATATAAGCTGTTTTCATA+AGG - chr1_3:61982439-61982458 None:intergenic 20.0%
!! AATGTGATCTTCTAATTAAT+AGG - chr1_3:61982740-61982759 None:intergenic 20.0%
!! CTACAAAAGTAATTAGATAT+AGG - chr1_3:61982833-61982852 None:intergenic 20.0%
!! CTAAAAGGAAAAGTTAAAAA+AGG - chr1_3:61983266-61983285 None:intergenic 20.0%
!! ATTTAAATAAGTAGGTTACA+TGG - chr1_3:61983311-61983330 None:intergenic 20.0%
!! AAGGTCATATTTAAATAAGT+AGG - chr1_3:61983319-61983338 None:intergenic 20.0%
!! ATAATTATATATAGGGACAA+AGG + chr1_3:61983400-61983419 Msa0131230:intron 20.0%
!! TTGAAACTATTTACATAAAG+AGG - chr1_3:61983578-61983597 None:intergenic 20.0%
!!! GTTTCAAGATTTTGTTTATA+AGG + chr1_3:61983591-61983610 Msa0131230:intron 20.0%
!!! TTCAAGATTTTGTTTATAAG+GGG + chr1_3:61983593-61983612 Msa0131230:intron 20.0%
!! CTCAATTCTTATTATGTAAA+TGG - chr1_3:61983650-61983669 None:intergenic 20.0%
!!! CTTTCTTAGTAAATTTTTAG+AGG + chr1_3:61983948-61983967 Msa0131230:intron 20.0%
!!! AAAATTTTCCAACTTCAATT+GGG - chr1_3:61984098-61984117 None:intergenic 20.0%
!! AATGAATGTAAAAAGGATAT+TGG - chr1_3:61984705-61984724 None:intergenic 20.0%
!! TCAATCAAATGAATGTAAAA+AGG - chr1_3:61984712-61984731 None:intergenic 20.0%
!! CTACATTTATTTATAAGTGT+TGG + chr1_3:61985303-61985322 Msa0131230:intron 20.0%
!!! CTTATTTGATTACATTTTCT+AGG + chr1_3:61985349-61985368 Msa0131230:intron 20.0%
!! TGTAAAAATCTTGAAAATCT+TGG + chr1_3:61986123-61986142 Msa0131230:intron 20.0%
!!! TGTTTACTTTTATTTCACAT+CGG + chr1_3:61986484-61986503 Msa0131230:intron 20.0%
!! TTCCTTCATCAAATATATAA+AGG + chr1_3:61986668-61986687 Msa0131230:intron 20.0%
!! ATCCTTTATATATTTGATGA+AGG - chr1_3:61986673-61986692 None:intergenic 20.0%
!! TCAATAGTTCATATAGTAAA+CGG + chr1_3:61986774-61986793 Msa0131230:CDS 20.0%
!!! TGCATATTTTATTTCATTCA+AGG - chr1_3:61987226-61987245 None:intergenic 20.0%
!!! CTTTAATTATGTTTAGTTTG+AGG - chr1_3:61987259-61987278 None:intergenic 20.0%
!! TTCATATATTTCACATTCTT+CGG - chr1_3:61987699-61987718 None:intergenic 20.0%
!! TTCATATATTTCACATTCTT+CGG - chr1_3:61987699-61987718 None:intergenic 20.0%
!!! TTTTCTATAAATTTTCCTGA+AGG + chr1_3:61987870-61987889 Msa0131230:intron 20.0%
!!! TATTATTTTTCTTCTCATAG+TGG - chr1_3:61988372-61988391 None:intergenic 20.0%
!! TTGCATATTTATCAATATCT+TGG + chr1_3:61988486-61988505 Msa0131230:intron 20.0%
!!! TTTTACTTTAAAGAAGAAGT+AGG + chr1_3:61988843-61988862 Msa0131230:intron 20.0%
!!! TTTACTTTAAAGAAGAAGTA+GGG + chr1_3:61988844-61988863 Msa0131230:intron 20.0%
!!! AAAAATAAGTGACTTGTTTT+AGG - chr1_3:61988896-61988915 None:intergenic 20.0%
!! AAGAAGAAAAATGTAGTTAA+AGG + chr1_3:61988917-61988936 Msa0131230:intron 20.0%
!! ATAAAAAATTGTCTTTAGCA+GGG - chr1_3:61989010-61989029 None:intergenic 20.0%
!! AATAAAAAATTGTCTTTAGC+AGG - chr1_3:61989011-61989030 None:intergenic 20.0%
!! ATGCAAAAAATTGAATAAAC+TGG - chr1_3:61989127-61989146 None:intergenic 20.0%
!!! ATAAAAAAGAAAAGTGTCAA+CGG - chr1_3:61989345-61989364 None:intergenic 20.0%
!! TCAATAAAATCTGGATTTAT+AGG + chr1_3:61989683-61989702 Msa0131230:intron 20.0%
!!! TTGATTTTTAAATGTGTAAG+AGG + chr1_3:61991182-61991201 Msa0131230:intron 20.0%
!!! TGAAATATTTCTTTTATGCA+TGG + chr1_3:61991525-61991544 Msa0131230:intron 20.0%
!!! ATATTTCCTTATTTAGAGAT+CGG + chr1_3:61991774-61991793 Msa0131230:CDS 20.0%
!!! CTAAAACATTTTTACTTTGT+TGG - chr1_3:61992056-61992075 None:intergenic 20.0%
!!! TAAAAATGTTTTAGCTTTGA+AGG + chr1_3:61992062-61992081 Msa0131230:three_prime_UTR 20.0%
!!! GAAAAAGAAGCATTTATTGT+TGG - chr1_3:61981511-61981530 None:intergenic 25.0%
! AAGAAGAATCATTCGAATTT+CGG + chr1_3:61981651-61981670 Msa0131230:CDS 25.0%
! CTTAAAAGAGGATTTAACAA+TGG + chr1_3:61981711-61981730 Msa0131230:CDS 25.0%
!!! TTTTTTCTTGGTATTATACC+TGG - chr1_3:61981870-61981889 None:intergenic 25.0%
!! TGAAAGTTTGTTTGATGAAA+TGG + chr1_3:61981939-61981958 Msa0131230:intron 25.0%
!! GAAAGTTTGTTTGATGAAAT+GGG + chr1_3:61981940-61981959 Msa0131230:intron 25.0%
!!! TTCAATCTTTAGAGTGTTAT+CGG + chr1_3:61982095-61982114 Msa0131230:intron 25.0%
!! TATAAGCACTTAGACTTTTT+GGG + chr1_3:61982341-61982360 Msa0131230:intron 25.0%
!! TTATCTTGTTTAAGCTTTCA+AGG + chr1_3:61982410-61982429 Msa0131230:intron 25.0%
!! ATTAAGTTGTTTATCCAAAC+AGG + chr1_3:61982506-61982525 Msa0131230:intron 25.0%
!! TTAAGTTGTTTATCCAAACA+GGG + chr1_3:61982507-61982526 Msa0131230:intron 25.0%
! TTTGAATTTCGCCATTATAA+GGG + chr1_3:61982692-61982711 Msa0131230:intron 25.0%
!!! AAACTTTTGGAAAATGAACT+TGG + chr1_3:61982769-61982788 Msa0131230:intron 25.0%
!!! AAGAGGTATTCTTAAAGATT+TGG + chr1_3:61982803-61982822 Msa0131230:intron 25.0%
! ATGTCTTAACTGAGATTATA+TGG + chr1_3:61982853-61982872 Msa0131230:intron 25.0%
!! TCTATCATTTGTCTAAGATT+TGG + chr1_3:61983050-61983069 Msa0131230:CDS 25.0%
! GAGATATTATAGATGGAAAT+TGG - chr1_3:61983235-61983254 None:intergenic 25.0%
! TTAAGAACTATACAATAGCT+TGG + chr1_3:61983492-61983511 Msa0131230:intron 25.0%
! ACATAACGATATAGAGTTAT+TGG + chr1_3:61983920-61983939 Msa0131230:intron 25.0%
!! GAAAATTTTCCAACTTCAAT+TGG - chr1_3:61984099-61984118 None:intergenic 25.0%
! GATTGCATCTATGTATTATA+TGG + chr1_3:61984134-61984153 Msa0131230:intron 25.0%
!!! CTTTTTTAAGAATTCCATGT+AGG + chr1_3:61984220-61984239 Msa0131230:intron 25.0%
!! ATGCGTTTGAAATTGATTAT+AGG + chr1_3:61984290-61984309 Msa0131230:intron 25.0%
!!! TGAGTTATTTTCATTTTGGA+AGG + chr1_3:61984349-61984368 Msa0131230:intron 25.0%
!!! ATCTGAATATAATTTTGGGT+TGG + chr1_3:61984469-61984488 Msa0131230:CDS 25.0%
!!! TAATTTTGGGTTGGTTTTAA+AGG + chr1_3:61984478-61984497 Msa0131230:CDS 25.0%
!! TCCTTACCTTTTATAAATGT+GGG - chr1_3:61984524-61984543 None:intergenic 25.0%
!! TACAGTTTTTAATCTAACCT+TGG - chr1_3:61984791-61984810 None:intergenic 25.0%
!! AATTTTCAGCACTAAACAAA+TGG - chr1_3:61984823-61984842 None:intergenic 25.0%
! ATTACAATCAATGTACATTC+GGG - chr1_3:61985018-61985037 None:intergenic 25.0%
! CATTACAATCAATGTACATT+CGG - chr1_3:61985019-61985038 None:intergenic 25.0%
! TAAATATTATTGGATGCATG+TGG + chr1_3:61985280-61985299 Msa0131230:intron 25.0%
!!! ATTTATAAGTGTTGGTATGA+TGG + chr1_3:61985311-61985330 Msa0131230:intron 25.0%
!!! TTTTGATGAGTTCTAGAATT+TGG + chr1_3:61985738-61985757 Msa0131230:intron 25.0%
!! TTAACATTTTGCTCTTTCAA+TGG + chr1_3:61985846-61985865 Msa0131230:intron 25.0%
!! TAAAGGTTGATTAAGCTAAT+GGG - chr1_3:61986350-61986369 None:intergenic 25.0%
!! ATAAAGGTTGATTAAGCTAA+TGG - chr1_3:61986351-61986370 None:intergenic 25.0%
!! AAACTTGTATGATAGGTTTT+TGG + chr1_3:61986698-61986717 Msa0131230:intron 25.0%
!!! TATGATAGGTTTTTGGATTT+TGG + chr1_3:61986705-61986724 Msa0131230:intron 25.0%
!!! TATGAACAGTTTTTGTTGTA+TGG + chr1_3:61986946-61986965 Msa0131230:intron 25.0%
!!! TATGTTTTATTTTCAGGAAC+TGG + chr1_3:61987022-61987041 Msa0131230:intron 25.0%
! GAGAAAAGTTTATAAAGAGA+AGG + chr1_3:61987446-61987465 Msa0131230:intron 25.0%
! TAAAAGCCTGTTGAAATTTA+GGG - chr1_3:61987514-61987533 None:intergenic 25.0%
! ATAAAAGCCTGTTGAAATTT+AGG - chr1_3:61987515-61987534 None:intergenic 25.0%
!! ATTTCAACAGGCTTTTATAT+TGG + chr1_3:61987517-61987536 Msa0131230:intron 25.0%
!! TTTCAACAGGCTTTTATATT+GGG + chr1_3:61987518-61987537 Msa0131230:intron 25.0%
!! TTTTGTAAGAGTTGTATTAC+AGG - chr1_3:61987567-61987586 None:intergenic 25.0%
!!! AATTTTTTCATGTTTGCTCA+TGG + chr1_3:61987809-61987828 Msa0131230:intron 25.0%
!!! ATTTGCTTTGGAACAATTTT+AGG + chr1_3:61988138-61988157 Msa0131230:intron 25.0%
! AACAAGGAAAATATTGCATT+CGG + chr1_3:61988251-61988270 Msa0131230:CDS 25.0%
! GGAGAAAGAAAGTTTAAAAA+GGG - chr1_3:61988579-61988598 None:intergenic 25.0%
! AGGAGAAAGAAAGTTTAAAA+AGG - chr1_3:61988580-61988599 None:intergenic 25.0%
! AAAATTGCATGAAATGAACA+TGG - chr1_3:61989231-61989250 None:intergenic 25.0%
! TAACATAAAACAAAAGCTTG+AGG - chr1_3:61989274-61989293 None:intergenic 25.0%
! ATCATAACCAAATTTCAACT+CGG - chr1_3:61989557-61989576 None:intergenic 25.0%
!!! TAATTGATTTTTTTCGTGAG+TGG + chr1_3:61989596-61989615 Msa0131230:intron 25.0%
!!! TATGTATTTTTGGGTTTATG+AGG + chr1_3:61989655-61989674 Msa0131230:intron 25.0%
!!! GAGGTTTTTTCAATAAAATC+TGG + chr1_3:61989674-61989693 Msa0131230:intron 25.0%
! AGATCCTATAAAAAGACTAA+GGG - chr1_3:61989973-61989992 None:intergenic 25.0%
! TAGATCCTATAAAAAGACTA+AGG - chr1_3:61989974-61989993 None:intergenic 25.0%
! TATAGATTCCTAAGTTCAAA+AGG - chr1_3:61990177-61990196 None:intergenic 25.0%
!!! GACTTTTTTTCCTTTCATTT+TGG + chr1_3:61990350-61990369 Msa0131230:intron 25.0%
! AATAATATTCTACGCAACTT+TGG + chr1_3:61990381-61990400 Msa0131230:intron 25.0%
! ATAATATTCTACGCAACTTT+GGG + chr1_3:61990382-61990401 Msa0131230:intron 25.0%
! CATTATCTCTCAAAATTATG+TGG + chr1_3:61990504-61990523 Msa0131230:intron 25.0%
! TCAAATGTTTCAGTATATGT+TGG - chr1_3:61990574-61990593 None:intergenic 25.0%
! ACATATACTGAAACATTTGA+AGG + chr1_3:61990574-61990593 Msa0131230:intron 25.0%
! TAATTTCTGTTATTGTAGCA+TGG + chr1_3:61990609-61990628 Msa0131230:intron 25.0%
! GAAAATGCATTACTTAACAA+TGG - chr1_3:61990672-61990691 None:intergenic 25.0%
! AAGAAAAAAAGATAACCAAG+AGG - chr1_3:61991005-61991024 None:intergenic 25.0%
!!! ATGTTGTTTCCAAATTTTCT+TGG + chr1_3:61991150-61991169 Msa0131230:intron 25.0%
! TATATATAGAAGGGTAACTT+AGG - chr1_3:61991422-61991441 None:intergenic 25.0%
! CAATGGATGATTAAATTATG+TGG + chr1_3:61991647-61991666 Msa0131230:CDS 25.0%
! ATGATTAAATTATGTGGACA+AGG + chr1_3:61991653-61991672 Msa0131230:CDS 25.0%
! AAGGAAATATAATCATATGC+AGG - chr1_3:61991764-61991783 None:intergenic 25.0%
! AGCTGTAATGATTATAACAA+GGG - chr1_3:61991879-61991898 None:intergenic 25.0%
! AAGCTGTAATGATTATAACA+AGG - chr1_3:61991880-61991899 None:intergenic 25.0%
!! GATAATATTGTTCTCTCTTT+TGG - chr1_3:61992034-61992053 None:intergenic 25.0%
!! ACACACTTACATTTTGTATA+TGG + chr1_3:61992143-61992162 Msa0131230:three_prime_UTR 25.0%
!! CACACTTACATTTTGTATAT+GGG + chr1_3:61992144-61992163 Msa0131230:three_prime_UTR 25.0%
!! ACACTTACATTTTGTATATG+GGG + chr1_3:61992145-61992164 Msa0131230:three_prime_UTR 25.0%
! TGAAACTATACATACTTGTA+GGG - chr1_3:61992221-61992240 None:intergenic 25.0%
! ATGAAACTATACATACTTGT+AGG - chr1_3:61992222-61992241 None:intergenic 25.0%
!! AGAAAATTAAGAGTTGATCT+TGG + chr1_3:61992381-61992400 Msa0131230:three_prime_UTR 25.0%
CAATTTCATCAACTTAACTG+TGG - chr1_3:61981356-61981375 None:intergenic 30.0%
ATTCTTCTTCTTCTTCTTAC+TGG - chr1_3:61981640-61981659 None:intergenic 30.0%
! ATTTAACAATGGTGTTGAGT+GGG + chr1_3:61981722-61981741 Msa0131230:CDS 30.0%
AACAAAGTCATCAACTTTCT+TGG - chr1_3:61981778-61981797 None:intergenic 30.0%
!! AGAAAGTTGATGACTTTGTT+TGG + chr1_3:61981778-61981797 Msa0131230:CDS 30.0%
TTGTTTGATGAAATGGGTAT+TGG + chr1_3:61981946-61981965 Msa0131230:intron 30.0%
TGTTTGATGAAATGGGTATT+GGG + chr1_3:61981947-61981966 Msa0131230:intron 30.0%
TGGCTTGAAATGATTGTTAT+AGG + chr1_3:61982009-61982028 Msa0131230:intron 30.0%
!!! TGTTCTGTTTTTATGTGTGT+TGG + chr1_3:61982034-61982053 Msa0131230:intron 30.0%
!!! GTTCTGTTTTTATGTGTGTT+GGG + chr1_3:61982035-61982054 Msa0131230:intron 30.0%
! TTTTTATGTGTGTTGGGTAT+TGG + chr1_3:61982041-61982060 Msa0131230:intron 30.0%
!! TCAATCTTTAGAGTGTTATC+GGG + chr1_3:61982096-61982115 Msa0131230:intron 30.0%
ATAACTAGACTAACTGTGTT+CGG + chr1_3:61982149-61982168 Msa0131230:intron 30.0%
!!! GAAAAACGTTTGTCACTTTT+CGG - chr1_3:61982214-61982233 None:intergenic 30.0%
TAACATTCCACTTCATGAAA+TGG - chr1_3:61982236-61982255 None:intergenic 30.0%
! GTATAAGCACTTAGACTTTT+TGG + chr1_3:61982340-61982359 Msa0131230:intron 30.0%
!! AGACTTTTTGGGAGATATTA+CGG + chr1_3:61982352-61982371 Msa0131230:intron 30.0%
TAAGTTGTTTATCCAAACAG+GGG + chr1_3:61982508-61982527 Msa0131230:intron 30.0%
CTTTGAATTTCGCCATTATA+AGG + chr1_3:61982691-61982710 Msa0131230:intron 30.0%
ACAAAACAACACCCTTATAA+TGG - chr1_3:61982706-61982725 None:intergenic 30.0%
TTGGAAAATGAACTTGGATT+TGG + chr1_3:61982775-61982794 Msa0131230:intron 30.0%
! TTAATCTACAAGAGTGTAGT+AGG - chr1_3:61982882-61982901 None:intergenic 30.0%
CTAAAAGACAAAGAACGAAT+AGG - chr1_3:61982967-61982986 None:intergenic 30.0%
! CTATTCGTTCTTTGTCTTTT+AGG + chr1_3:61982965-61982984 Msa0131230:intron 30.0%
! AATTGGTTTCTGCAGATAAA+TGG + chr1_3:61983374-61983393 Msa0131230:intron 30.0%
ATATATAGGGACAAAGGTTT+AGG + chr1_3:61983406-61983425 Msa0131230:intron 30.0%
TCTTATTATGTAAATGGTCG+AGG - chr1_3:61983644-61983663 None:intergenic 30.0%
!! ATTTAGCTTGGTGGTAAATA+GGG - chr1_3:61983759-61983778 None:intergenic 30.0%
!! TATTTAGCTTGGTGGTAAAT+AGG - chr1_3:61983760-61983779 None:intergenic 30.0%
TATTTACCACCAAGCTAAAT+AGG + chr1_3:61983759-61983778 Msa0131230:intron 30.0%
AAAAAACCAATCACTAAGTG+GGG - chr1_3:61983878-61983897 None:intergenic 30.0%
CAAAAAACCAATCACTAAGT+GGG - chr1_3:61983879-61983898 None:intergenic 30.0%
TCAAAAAACCAATCACTAAG+TGG - chr1_3:61983880-61983899 None:intergenic 30.0%
TCTATGTATTCTATCCTACA+TGG - chr1_3:61984237-61984256 None:intergenic 30.0%
TTTCTACCAATAAATGCAGA+AGG + chr1_3:61984428-61984447 Msa0131230:CDS 30.0%
TTCTACCAATAAATGCAGAA+GGG + chr1_3:61984429-61984448 Msa0131230:CDS 30.0%
AAGGAAACAATGCTTAATCT+TGG + chr1_3:61984497-61984516 Msa0131230:CDS 30.0%
! CCTTACCTTTTATAAATGTG+GGG - chr1_3:61984523-61984542 None:intergenic 30.0%
! CTCCTTACCTTTTATAAATG+TGG - chr1_3:61984525-61984544 None:intergenic 30.0%
CACATTTATAAAAGGTAAGG+AGG + chr1_3:61984523-61984542 Msa0131230:intron 30.0%
CTGAAAATTTCTTTCTTGTG+TGG + chr1_3:61984834-61984853 Msa0131230:intron 30.0%
AATTTCTTTCTTGTGTGGAA+AGG + chr1_3:61984839-61984858 Msa0131230:intron 30.0%
ATAGTGAAGATGTCTGATTA+GGG + chr1_3:61984883-61984902 Msa0131230:intron 30.0%
TAGCTATGCATCAAATTCAT+TGG + chr1_3:61984918-61984937 Msa0131230:intron 30.0%
AAGATTCTTGAGGAAGAATT+AGG + chr1_3:61985164-61985183 Msa0131230:CDS 30.0%
!! ATTTTTCAGCTACATTTCTG+AGG + chr1_3:61985202-61985221 Msa0131230:CDS 30.0%
ATTAACACCATCAATAGTAC+GGG - chr1_3:61985384-61985403 None:intergenic 30.0%
CATTAACACCATCAATAGTA+CGG - chr1_3:61985385-61985404 None:intergenic 30.0%
TGAATTGGATTACACTTTAG+AGG + chr1_3:61985651-61985670 Msa0131230:CDS 30.0%
! ATTGTGAACCAACATTGATT+TGG + chr1_3:61985807-61985826 Msa0131230:intron 30.0%
GATACAGAGATTAAATCTGT+TGG - chr1_3:61985992-61986011 None:intergenic 30.0%
GATTTAATCTCTGTATCTAC+CGG + chr1_3:61985995-61986014 Msa0131230:CDS 30.0%
TGAATATTCAGTAGAGTTTC+CGG - chr1_3:61986017-61986036 None:intergenic 30.0%
ACTCTACTGAATATTCAGAT+AGG + chr1_3:61986020-61986039 Msa0131230:CDS 30.0%
CAAAGACAAGAATGGATAAT+TGG - chr1_3:61986098-61986117 None:intergenic 30.0%
TCTTGAAAATCTTGGATGTT+TGG + chr1_3:61986131-61986150 Msa0131230:intron 30.0%
! TTTTAGTAGAATGGGTAACT+CGG - chr1_3:61986396-61986415 None:intergenic 30.0%
!! ACGTGAAGTTTTAGTAGAAT+GGG - chr1_3:61986404-61986423 None:intergenic 30.0%
!! TACGTGAAGTTTTAGTAGAA+TGG - chr1_3:61986405-61986424 None:intergenic 30.0%
TATTTCACATCGGAAAATTC+AGG + chr1_3:61986494-61986513 Msa0131230:intron 30.0%
! ATTGGTTCAACTTCTTGAAA+CGG + chr1_3:61986539-61986558 Msa0131230:CDS 30.0%
TATTTAGATTGGACAGAGAA+AGG - chr1_3:61986638-61986657 None:intergenic 30.0%
AAGCTACCAGTTATTTAGAT+TGG - chr1_3:61986649-61986668 None:intergenic 30.0%
AGAGTCATCTTTAACAAGAT+GGG + chr1_3:61987107-61987126 Msa0131230:intron 30.0%
!! TTATGTTTAGTTTGAGGTAG+TGG - chr1_3:61987253-61987272 None:intergenic 30.0%
!! TCGGTTTTGTAAGAGTTATT+AGG - chr1_3:61987544-61987563 None:intergenic 30.0%
!! CTGAAAAGGTGTTTATAAGT+GGG - chr1_3:61987615-61987634 None:intergenic 30.0%
ATGATGGTTTCAGTTTAGAT+TGG - chr1_3:61987723-61987742 None:intergenic 30.0%
! ATAAATTTTCCTGAAGGTTC+TGG + chr1_3:61987876-61987895 Msa0131230:intron 30.0%
! TAAATTTTCCTGAAGGTTCT+GGG + chr1_3:61987877-61987896 Msa0131230:intron 30.0%
AAGACAAGTGTATAATATGC+TGG - chr1_3:61987943-61987962 None:intergenic 30.0%
CAAATTATGAATGGAAGAAG+AGG - chr1_3:61988123-61988142 None:intergenic 30.0%
!! CTTCCATTCATAATTTGCTT+TGG + chr1_3:61988126-61988145 Msa0131230:intron 30.0%
GTTCCAAAGCAAATTATGAA+TGG - chr1_3:61988132-61988151 None:intergenic 30.0%
!!! CTTTGGAACAATTTTAGGTT+TGG + chr1_3:61988143-61988162 Msa0131230:intron 30.0%
! ATGCAATATTTTCCTTGTTG+CGG - chr1_3:61988250-61988269 None:intergenic 30.0%
ATATGCAAAACTACGAAGAT+TGG - chr1_3:61988474-61988493 None:intergenic 30.0%
AGATAAGTCAAGAAAAAGAC+AGG - chr1_3:61988824-61988843 None:intergenic 30.0%
GTTAAAGGAGCTTCAATTAA+AGG + chr1_3:61988932-61988951 Msa0131230:intron 30.0%
CTTCAATTAAAGGAGTTGAA+AGG + chr1_3:61988942-61988961 Msa0131230:intron 30.0%
TGGCTTGAATGTAGATAATT+TGG - chr1_3:61989161-61989180 None:intergenic 30.0%
!! TCCTTCTGTTTCTTTTGTTT+TGG + chr1_3:61989529-61989548 Msa0131230:intron 30.0%
ACCAAAACAAAAGAAACAGA+AGG - chr1_3:61989533-61989552 None:intergenic 30.0%
GAGTGGAAAAAAGATAATTC+AGG + chr1_3:61989613-61989632 Msa0131230:intron 30.0%
ATTCAGGCTATGTAGAAAAA+TGG + chr1_3:61989629-61989648 Msa0131230:intron 30.0%
GGATTTATAGGTTTATGTGA+TGG + chr1_3:61989695-61989714 Msa0131230:intron 30.0%
TACAAAATTGCCTCAGTATT+TGG + chr1_3:61990328-61990347 Msa0131230:intron 30.0%
GAAAAAAAGTCCAAATACTG+AGG - chr1_3:61990341-61990360 None:intergenic 30.0%
TAATATTCTACGCAACTTTG+GGG + chr1_3:61990383-61990402 Msa0131230:intron 30.0%
! ATTTGAAGTTACTAGTTGCA+AGG - chr1_3:61990798-61990817 None:intergenic 30.0%
AAAAAGATAACCAAGAGGAA+TGG - chr1_3:61991000-61991019 None:intergenic 30.0%
CAACATATACTCTCATAATC+AGG - chr1_3:61991136-61991155 None:intergenic 30.0%
AGTTCGTTATAATTGTACGT+GGG + chr1_3:61991219-61991238 Msa0131230:intron 30.0%
! ATGTTAAAGCACCAAAAGAT+GGG - chr1_3:61991255-61991274 None:intergenic 30.0%
! AATGTTAAAGCACCAAAAGA+TGG - chr1_3:61991256-61991275 None:intergenic 30.0%
!! GGAAGCATCTATATATAGAA+GGG - chr1_3:61991431-61991450 None:intergenic 30.0%
!! TGGAAGCATCTATATATAGA+AGG - chr1_3:61991432-61991451 None:intergenic 30.0%
AAAAAAGAAGATGAACGCAT+CGG - chr1_3:61991470-61991489 None:intergenic 30.0%
TTACAGATACTCAATATCCA+AGG + chr1_3:61991678-61991697 Msa0131230:CDS 30.0%
TACAGATACTCAATATCCAA+GGG + chr1_3:61991679-61991698 Msa0131230:CDS 30.0%
! ATATTGTTCTCTCTTTTGGT+AGG - chr1_3:61992030-61992049 None:intergenic 30.0%
! CACTTACATTTTGTATATGG+GGG + chr1_3:61992146-61992165 Msa0131230:three_prime_UTR 30.0%
AATGCAAAACAAATCATGGA+TGG - chr1_3:61992409-61992428 None:intergenic 30.0%
TGCAAATGCAAAACAAATCA+TGG - chr1_3:61992413-61992432 None:intergenic 30.0%
TGATTGTGAAGAGAAGTGAT+TGG - chr1_3:61981455-61981474 None:intergenic 35.0%
TTCTTCTTCTTCTTACTGGA+CGG - chr1_3:61981636-61981655 None:intergenic 35.0%
GACATGGAGTTTCTTAAAAG+AGG + chr1_3:61981699-61981718 Msa0131230:CDS 35.0%
! GATTTAACAATGGTGTTGAG+TGG + chr1_3:61981721-61981740 Msa0131230:CDS 35.0%
TCAACTTTCTTGGCAATTTG+AGG - chr1_3:61981768-61981787 None:intergenic 35.0%
!!! ATGGGTATTGGGTATTTTTG+TGG + chr1_3:61981958-61981977 Msa0131230:intron 35.0%
! TTAGTTGGTTGATTGGTTCA+TGG + chr1_3:61982124-61982143 Msa0131230:intron 35.0%
TTCGGAGTTATGGAATAAGA+CGG + chr1_3:61982167-61982186 Msa0131230:intron 35.0%
! CGTTTTTCCATTTCATGAAG+TGG + chr1_3:61982226-61982245 Msa0131230:intron 35.0%
TGAATGCAAAATAGCAAGTG+AGG - chr1_3:61982269-61982288 None:intergenic 35.0%
TAGCTTATTTGAGCTTACCT+TGG + chr1_3:61982318-61982337 Msa0131230:intron 35.0%
AAGTCTAAGTGCTTATACCA+AGG - chr1_3:61982338-61982357 None:intergenic 35.0%
AGTATTCCCAGTAAAATGCA+AGG - chr1_3:61982673-61982692 None:intergenic 35.0%
AAATGAACTTGGATTTGGAC+TGG + chr1_3:61982780-61982799 Msa0131230:intron 35.0%
AAACCATATCTCTCTGATCA+TGG - chr1_3:61982943-61982962 None:intergenic 35.0%
TTTGCTCATGTATGATCTGA+AGG + chr1_3:61983003-61983022 Msa0131230:CDS 35.0%
! ATTGGAAAAGAGCGTATTCA+TGG - chr1_3:61983217-61983236 None:intergenic 35.0%
ATAAGGGGTTAACAATTGCA+AGG + chr1_3:61983608-61983627 Msa0131230:intron 35.0%
!! TTTAGCTTGGTGGTAAATAG+GGG - chr1_3:61983758-61983777 None:intergenic 35.0%
AGATGTGGTGTCTATTTAGA+AGG + chr1_3:61983803-61983822 Msa0131230:intron 35.0%
GATGTGGTGTCTATTTAGAA+GGG + chr1_3:61983804-61983823 Msa0131230:intron 35.0%
! TTTAGAAGGGTGTGTATTGA+AGG + chr1_3:61983817-61983836 Msa0131230:intron 35.0%
!!! AATTTTTAGAGGTGCTGAGT+TGG + chr1_3:61983959-61983978 Msa0131230:intron 35.0%
AGGATATTCCCAATTGAAGT+TGG + chr1_3:61984087-61984106 Msa0131230:intron 35.0%
CTCAATAAGGATACACTTCA+TGG - chr1_3:61984333-61984352 None:intergenic 35.0%
TCTACCAATAAATGCAGAAG+GGG + chr1_3:61984430-61984449 Msa0131230:CDS 35.0%
ATATCCCCTTCTGCATTTAT+TGG - chr1_3:61984437-61984456 None:intergenic 35.0%
AATAAATGCAGAAGGGGATA+TGG + chr1_3:61984436-61984455 Msa0131230:CDS 35.0%
CCCCACATTTATAAAAGGTA+AGG + chr1_3:61984520-61984539 Msa0131230:intron 35.0%
TGTAATGCCTATCACTTCAA+AGG + chr1_3:61984635-61984654 Msa0131230:intron 35.0%
!! CAGAAAACCTTTGAAGTGAT+AGG - chr1_3:61984645-61984664 None:intergenic 35.0%
! TCACTTCAAAGGTTTTCTGT+TGG + chr1_3:61984646-61984665 Msa0131230:intron 35.0%
! CACTTCAAAGGTTTTCTGTT+GGG + chr1_3:61984647-61984666 Msa0131230:intron 35.0%
ATCTCAACACCAATGATATC+TGG - chr1_3:61984766-61984785 None:intergenic 35.0%
! TTTCTTGTGTGGAAAGGTAT+CGG + chr1_3:61984845-61984864 Msa0131230:intron 35.0%
GATAGTGAAGATGTCTGATT+AGG + chr1_3:61984882-61984901 Msa0131230:intron 35.0%
TAGTGAAGATGTCTGATTAG+GGG + chr1_3:61984884-61984903 Msa0131230:intron 35.0%
! AGCTGTAACTCTTATTTGCA+TGG + chr1_3:61984966-61984985 Msa0131230:intron 35.0%
TCCAGTTATTCGAACTTTAG+CGG - chr1_3:61985042-61985061 None:intergenic 35.0%
TGTTGCTATGAAGATTCTTG+AGG + chr1_3:61985154-61985173 Msa0131230:CDS 35.0%
TAGCTGAAAAATGATTCCAG+GGG - chr1_3:61985194-61985213 None:intergenic 35.0%
GTAGCTGAAAAATGATTCCA+GGG - chr1_3:61985195-61985214 None:intergenic 35.0%
TGTAGCTGAAAAATGATTCC+AGG - chr1_3:61985196-61985215 None:intergenic 35.0%
ATATCTACATTCTTCGCCTT+GGG + chr1_3:61985453-61985472 Msa0131230:CDS 35.0%
AAAGATCAATACAAACCCCA+AGG - chr1_3:61985472-61985491 None:intergenic 35.0%
CATGCAGGATAGAATAATAC+AGG - chr1_3:61985514-61985533 None:intergenic 35.0%
CTGTATTATTCTATCCTGCA+TGG + chr1_3:61985512-61985531 Msa0131230:intron 35.0%
CTCATTTAAGAATTCCATGC+AGG - chr1_3:61985529-61985548 None:intergenic 35.0%
CAGCAAATGCATTGAAGTTT+CGG + chr1_3:61985674-61985693 Msa0131230:CDS 35.0%
AGCAAATGCATTGAAGTTTC+GGG + chr1_3:61985675-61985694 Msa0131230:CDS 35.0%
!! GATTTGTTATTGCATCATGC+AGG + chr1_3:61985868-61985887 Msa0131230:intron 35.0%
GGCAAAAAGTAGATGCAAAA+AGG + chr1_3:61986041-61986060 Msa0131230:CDS 35.0%
ACACAATGCAAAGACAAGAA+TGG - chr1_3:61986106-61986125 None:intergenic 35.0%
! TTTGGTAATCTCCTGACAAT+TGG + chr1_3:61986149-61986168 Msa0131230:intron 35.0%
ATCTCCTGACAATTGGATTA+TGG + chr1_3:61986156-61986175 Msa0131230:intron 35.0%
CGGAAAATTCAGGTCAATAA+AGG + chr1_3:61986504-61986523 Msa0131230:intron 35.0%
!! TAAAGGTGTTGAAGCAACAT+TGG + chr1_3:61986521-61986540 Msa0131230:CDS 35.0%
TTGGTTCAACTTCTTGAAAC+GGG + chr1_3:61986540-61986559 Msa0131230:CDS 35.0%
CTCTGTCCAATCTAAATAAC+TGG + chr1_3:61986640-61986659 Msa0131230:intron 35.0%
!!! TTTTGGTTTGCTCTGTCAAA+TGG + chr1_3:61986722-61986741 Msa0131230:CDS 35.0%
TGCTCTGTCAAATGGAAAAA+AGG + chr1_3:61986730-61986749 Msa0131230:CDS 35.0%
TTCATATAGTAAACGGTGAC+TGG + chr1_3:61986781-61986800 Msa0131230:CDS 35.0%
TCATATAGTAAACGGTGACT+GGG + chr1_3:61986782-61986801 Msa0131230:CDS 35.0%
ATTATACCATGGTAACAAGC+CGG - chr1_3:61986863-61986882 None:intergenic 35.0%
GAGATGTGAGTATTATACCA+TGG - chr1_3:61986874-61986893 None:intergenic 35.0%
TGGTATAATACTCACATCTC+AGG + chr1_3:61986874-61986893 Msa0131230:intron 35.0%
! AATACTCACATCTCAGGTTT+TGG + chr1_3:61986880-61986899 Msa0131230:intron 35.0%
!! TTATTTTCAGGAACTGGAAC+AGG + chr1_3:61987028-61987047 Msa0131230:intron 35.0%
GAGAGTCATCTTTAACAAGA+TGG + chr1_3:61987106-61987125 Msa0131230:intron 35.0%
ACATTTCTATTAGGCTTTGC+TGG + chr1_3:61987285-61987304 Msa0131230:intron 35.0%
AAGAGTCATCTATCTGATGT+GGG - chr1_3:61987426-61987445 None:intergenic 35.0%
CTAACTCATCCTTACAAAAC+CGG - chr1_3:61987490-61987509 None:intergenic 35.0%
GTAAGAGTTGTATTACAGGT+CGG - chr1_3:61987563-61987582 None:intergenic 35.0%
!! CCTGAAAAGGTGTTTATAAG+TGG - chr1_3:61987616-61987635 None:intergenic 35.0%
! CCACTTATAAACACCTTTTC+AGG + chr1_3:61987613-61987632 Msa0131230:intron 35.0%
GAAATTGTTGAGTTCCACAT+TGG - chr1_3:61987650-61987669 None:intergenic 35.0%
! TCTTCGGACATTGATTATGA+TGG - chr1_3:61987683-61987702 None:intergenic 35.0%
! TCTTCGGACATTGATTATGA+TGG - chr1_3:61987683-61987702 None:intergenic 35.0%
ATATATGAAACCAACCGCAT+AGG + chr1_3:61987766-61987785 Msa0131230:intron 35.0%
ATCCATAGACATATCCTATG+CGG - chr1_3:61987783-61987802 None:intergenic 35.0%
GTGTATAATATGCTGGCATA+CGG - chr1_3:61987936-61987955 None:intergenic 35.0%
TGTATATTTACCCAGAACAG+TGG + chr1_3:61988277-61988296 Msa0131230:intron 35.0%
GTATATTTACCCAGAACAGT+GGG + chr1_3:61988278-61988297 Msa0131230:intron 35.0%
! TTTTATCAACCACAGTTCTG+TGG - chr1_3:61988322-61988341 None:intergenic 35.0%
TGCAAGACAGTACATGTTTA+AGG - chr1_3:61988534-61988553 None:intergenic 35.0%
AAACTTTCTTTCTCCTGTTC+AGG + chr1_3:61988584-61988603 Msa0131230:intron 35.0%
GGTACTTCTAAATCGAAAGA+AGG + chr1_3:61988605-61988624 Msa0131230:intron 35.0%
TTTCCATGTTCTTGAGAGTA+GGG + chr1_3:61988646-61988665 Msa0131230:CDS 35.0%
!! AACAGGCTCTAAATATAGGT+TGG - chr1_3:61988798-61988817 None:intergenic 35.0%
! ACCTATATTTAGAGCCTGTT+TGG + chr1_3:61988798-61988817 Msa0131230:intron 35.0%
TGGATACATTAGGGAAATGA+AGG - chr1_3:61989205-61989224 None:intergenic 35.0%
! ACATGGTGTTGGATACATTA+GGG - chr1_3:61989214-61989233 None:intergenic 35.0%
! AACATGGTGTTGGATACATT+AGG - chr1_3:61989215-61989234 None:intergenic 35.0%
TTCTAGACCTTCAAAAAGCT+GGG + chr1_3:61989938-61989957 Msa0131230:intron 35.0%
CAGATGGAATTGAAAACAGT+CGG - chr1_3:61989997-61990016 None:intergenic 35.0%
! TGCACTTTCCTTTTGAACTT+AGG + chr1_3:61990166-61990185 Msa0131230:intron 35.0%
TTGATGAGCACCAAAATGAA+AGG - chr1_3:61990363-61990382 None:intergenic 35.0%
AATATTCTACGCAACTTTGG+GGG + chr1_3:61990384-61990403 Msa0131230:intron 35.0%
AAGTAACTAAAACAGACCAG+AGG - chr1_3:61990708-61990727 None:intergenic 35.0%
TGCAATATCAAATGTACCAG+CGG - chr1_3:61990855-61990874 None:intergenic 35.0%
! ACGATTTTACCATCCAAAGA+TGG + chr1_3:61990887-61990906 Msa0131230:CDS 35.0%
CAAAGCTAGTGATAGATACA+TGG + chr1_3:61991072-61991091 Msa0131230:intron 35.0%
AGCAAGAGTCCAAGAAAATT+TGG - chr1_3:61991162-61991181 None:intergenic 35.0%
CACGTACAATTATAACGAAC+TGG - chr1_3:61991220-61991239 None:intergenic 35.0%
CAGTTCGTTATAATTGTACG+TGG + chr1_3:61991218-61991237 Msa0131230:intron 35.0%
! TGTTAAAGCACCAAAAGATG+GGG - chr1_3:61991254-61991273 None:intergenic 35.0%
!! ATCGGTTATTTCTTGCATGA+TGG - chr1_3:61991452-61991471 None:intergenic 35.0%
! CTTTTATGCATGGAATGAAC+AGG + chr1_3:61991535-61991554 Msa0131230:intron 35.0%
AGCTTCAATAATCAGAGCAA+TGG + chr1_3:61991562-61991581 Msa0131230:CDS 35.0%
! ACTTCGGGTGATATTTTCTA+AGG + chr1_3:61991799-61991818 Msa0131230:CDS 35.0%
GTCATAAAATACTGATGCTG+CGG + chr1_3:61991840-61991859 Msa0131230:CDS 35.0%
AATCATTACAGCTTCAGCTT+TGG + chr1_3:61991886-61991905 Msa0131230:CDS 35.0%
GAGGGTAAAATATGTGGTAT+AGG + chr1_3:61992098-61992117 Msa0131230:three_prime_UTR 35.0%
GGTAAAATATGTGGTATAGG+AGG + chr1_3:61992101-61992120 Msa0131230:three_prime_UTR 35.0%
! AGGAGGATAGCATTATCTTT+TGG + chr1_3:61992118-61992137 Msa0131230:three_prime_UTR 35.0%
ATTTCTCATGTTGACCAGTG+TGG + chr1_3:61981320-61981339 Msa0131230:five_prime_UTR 40.0%
GTGGAATACATTTACCACAC+TGG - chr1_3:61981337-61981356 None:intergenic 40.0%
TAGTGTGAGTTGTTGATGTG+TGG - chr1_3:61981421-61981440 None:intergenic 40.0%
AGAGAAGTGATTGGTAGAAG+TGG - chr1_3:61981446-61981465 None:intergenic 40.0%
CATTCGAATTTCGGTCACTT+TGG + chr1_3:61981660-61981679 Msa0131230:CDS 40.0%
TCTTGGCAATTTGAGGAATG+CGG - chr1_3:61981761-61981780 None:intergenic 40.0%
TGGAAAACGAAGTAGCTTGA+GGG - chr1_3:61981821-61981840 None:intergenic 40.0%
GGTATTATACCTGGATACCA+AGG - chr1_3:61981861-61981880 None:intergenic 40.0%
!! GGTATTGGGTATTTTTGTGG+TGG + chr1_3:61981961-61981980 Msa0131230:intron 40.0%
! TTTGTGGTGGAACATGCTAA+TGG + chr1_3:61981974-61981993 Msa0131230:intron 40.0%
! TTGTGGTGGAACATGCTAAT+GGG + chr1_3:61981975-61981994 Msa0131230:intron 40.0%
TGTTATCGGGTCTGTTTAGT+TGG + chr1_3:61982109-61982128 Msa0131230:intron 40.0%
GGTCTGTTTAGTTGGTTGAT+TGG + chr1_3:61982117-61982136 Msa0131230:intron 40.0%
ACTAACTGTGTTCGGAGTTA+TGG + chr1_3:61982157-61982176 Msa0131230:intron 40.0%
CAAAATAAGCCAATCCAGAG+AGG - chr1_3:61982295-61982314 None:intergenic 40.0%
AGTAGCCTAGAATATGCAGA+AGG - chr1_3:61982534-61982553 None:intergenic 40.0%
TCTGCATATTCTAGGCTACT+TGG + chr1_3:61982534-61982553 Msa0131230:intron 40.0%
! TACTTGGTGGAGGTTAATGA+TGG + chr1_3:61982550-61982569 Msa0131230:intron 40.0%
! TGACTGTCCTTGCATTTTAC+TGG + chr1_3:61982663-61982682 Msa0131230:intron 40.0%
! GACTGTCCTTGCATTTTACT+GGG + chr1_3:61982664-61982683 Msa0131230:intron 40.0%
!!! CTTTGTCTTTTAGGACTGTC+TGG + chr1_3:61982974-61982993 Msa0131230:intron 40.0%
GTAACTAGCATATGCTTCCA+AGG - chr1_3:61983029-61983048 None:intergenic 40.0%
TCCTGAGGATCATAAGTTTC+AGG - chr1_3:61983088-61983107 None:intergenic 40.0%
GCGTATTCATGGATGGAAAT+TGG - chr1_3:61983206-61983225 None:intergenic 40.0%
! GAAAAGAGCGTATTCATGGA+TGG - chr1_3:61983213-61983232 None:intergenic 40.0%
GTGTTGTGACTCAAGCTAAA+AGG - chr1_3:61983281-61983300 None:intergenic 40.0%
TAAAACGGATCACAGGACAA+AGG - chr1_3:61983338-61983357 None:intergenic 40.0%
TGATACGTAAAACGGATCAC+AGG - chr1_3:61983345-61983364 None:intergenic 40.0%
! GATCCGTTTTACGTATCAGT+AGG + chr1_3:61983347-61983366 Msa0131230:intron 40.0%
CCTCCTACTGATACGTAAAA+CGG - chr1_3:61983353-61983372 None:intergenic 40.0%
ACGTATCAGTAGGAGGTAAT+TGG + chr1_3:61983357-61983376 Msa0131230:intron 40.0%
AGAACCAAAGTGTATCATGC+AGG + chr1_3:61983438-61983457 Msa0131230:intron 40.0%
! ACATCTTTTTACGCCACAGT+GGG - chr1_3:61983789-61983808 None:intergenic 40.0%
AAACGAGTGATGTGTAGTTG+CGG + chr1_3:61984012-61984031 Msa0131230:intron 40.0%
! AGAGCATCCACAATATCGAT+GGG - chr1_3:61984067-61984086 None:intergenic 40.0%
! TAGAGCATCCACAATATCGA+TGG - chr1_3:61984068-61984087 None:intergenic 40.0%
ATCGATATTGTGGATGCTCT+AGG + chr1_3:61984067-61984086 Msa0131230:intron 40.0%
CTTGGCCCCACATTTATAAA+AGG + chr1_3:61984515-61984534 Msa0131230:CDS 40.0%
CATTTGATTGACGATGCAGT+TGG + chr1_3:61984721-61984740 Msa0131230:intron 40.0%
TGTACATTCGGGACACAAAA+AGG - chr1_3:61985007-61985026 None:intergenic 40.0%
TTTGATTGCGTTCTTCTTGC+AGG + chr1_3:61985088-61985107 Msa0131230:intron 40.0%
ATAGCAACAGTCCTAGGAAA+GGG - chr1_3:61985143-61985162 None:intergenic 40.0%
ATCTTCATAGCAACAGTCCT+AGG - chr1_3:61985149-61985168 None:intergenic 40.0%
TACTTTGCCCGTACTATTGA+TGG + chr1_3:61985374-61985393 Msa0131230:CDS 40.0%
AAGTTCAGCGTCCTAATTTG+CGG + chr1_3:61985414-61985433 Msa0131230:CDS 40.0%
GATATCTACATTCTTCGCCT+TGG + chr1_3:61985452-61985471 Msa0131230:CDS 40.0%
TATCTACATTCTTCGCCTTG+GGG + chr1_3:61985454-61985473 Msa0131230:CDS 40.0%
ATCTTAACCATCTCCTCAGT+TGG + chr1_3:61985552-61985571 Msa0131230:intron 40.0%
TCTTAACCATCTCCTCAGTT+GGG + chr1_3:61985553-61985572 Msa0131230:intron 40.0%
GTCAGACACCAAATCAATGT+TGG - chr1_3:61985818-61985837 None:intergenic 40.0%
!! AAAAAGGCGTCTACTTGATC+TGG + chr1_3:61986057-61986076 Msa0131230:CDS 40.0%
CCTACCATAATCCAATTGTC+AGG - chr1_3:61986163-61986182 None:intergenic 40.0%
CCTGACAATTGGATTATGGT+AGG + chr1_3:61986160-61986179 Msa0131230:intron 40.0%
TGATTAAGCTAATGGGAGGT+TGG - chr1_3:61986343-61986362 None:intergenic 40.0%
! AGGTTGATTAAGCTAATGGG+AGG - chr1_3:61986347-61986366 None:intergenic 40.0%
TGCACTTCATCAGGAGAAAT+AGG + chr1_3:61986600-61986619 Msa0131230:CDS 40.0%
GCACTTCATCAGGAGAAATA+GGG + chr1_3:61986601-61986620 Msa0131230:CDS 40.0%
TGTCAACGCTCTGATTGATA+TGG + chr1_3:61986812-61986831 Msa0131230:CDS 40.0%
CGCTCTGATTGATATGGATA+TGG + chr1_3:61986818-61986837 Msa0131230:CDS 40.0%
ATATGGATATGGTGAGACCA+GGG + chr1_3:61986829-61986848 Msa0131230:CDS 40.0%
!! AAATATCCGGCTTGTTACCA+TGG + chr1_3:61986854-61986873 Msa0131230:CDS 40.0%
GCGTGAACATAAGCTTAAGA+AGG - chr1_3:61986979-61986998 None:intergenic 40.0%
CAGCAATGATAGCAAACCAA+AGG - chr1_3:61987358-61987377 None:intergenic 40.0%
!! CTTCATTGTGTTGGCTTTGA+GGG + chr1_3:61987388-61987407 Msa0131230:intron 40.0%
!! TTCATTGTGTTGGCTTTGAG+GGG + chr1_3:61987389-61987408 Msa0131230:intron 40.0%
CAAGAGTCATCTATCTGATG+TGG - chr1_3:61987427-61987446 None:intergenic 40.0%
!! CGGTTTTGTAAGGATGAGTT+AGG + chr1_3:61987488-61987507 Msa0131230:intron 40.0%
GTTAGGCCCTAAATTTCAAC+AGG + chr1_3:61987505-61987524 Msa0131230:intron 40.0%
ACATCTCTCACTTTACAGGT+CGG - chr1_3:61987590-61987609 None:intergenic 40.0%
GTTCCACATTGGATGAGATA+GGG - chr1_3:61987639-61987658 None:intergenic 40.0%
AGTTCCACATTGGATGAGAT+AGG - chr1_3:61987640-61987659 None:intergenic 40.0%
ATAGACATATCCTATGCGGT+TGG - chr1_3:61987779-61987798 None:intergenic 40.0%
AACCGCATAGGATATGTCTA+TGG + chr1_3:61987778-61987797 Msa0131230:intron 40.0%
AAATCTTTCCCAGAACCTTC+AGG - chr1_3:61987888-61987907 None:intergenic 40.0%
TTTACCTTCGAAAGAGGCTA+GGG - chr1_3:61987971-61987990 None:intergenic 40.0%
CAACAGTTTACCTTCGAAAG+AGG - chr1_3:61987977-61987996 None:intergenic 40.0%
AAAGACTCAGGATCTAGTCA+TGG - chr1_3:61988347-61988366 None:intergenic 40.0%
! CTCATAGTGGAAAAAGACTC+AGG - chr1_3:61988359-61988378 None:intergenic 40.0%
!! CGATTTAGAAGTACCTGAAC+AGG - chr1_3:61988600-61988619 None:intergenic 40.0%
ATCGAAAGAAGGAGTTCCAA+TGG + chr1_3:61988616-61988635 Msa0131230:CDS 40.0%
CTTTCCATGTTCTTGAGAGT+AGG + chr1_3:61988645-61988664 Msa0131230:CDS 40.0%
TTCCATGTTCTTGAGAGTAG+GGG + chr1_3:61988647-61988666 Msa0131230:CDS 40.0%
GTATGTCAAAGTGCATGTCA+GGG + chr1_3:61988677-61988696 Msa0131230:intron 40.0%
!! GCCAAACAGGCTCTAAATAT+AGG - chr1_3:61988802-61988821 None:intergenic 40.0%
AAGAAAAAGACAGGCCAAAC+AGG - chr1_3:61988815-61988834 None:intergenic 40.0%
AAGTAGGGCCAAACAACATT+TGG + chr1_3:61988859-61988878 Msa0131230:intron 40.0%
AGTAGGGCCAAACAACATTT+GGG + chr1_3:61988860-61988879 Msa0131230:intron 40.0%
AGCTTCTCCCAAATGTTGTT+TGG - chr1_3:61988870-61988889 None:intergenic 40.0%
GCATGAAATGAACATGGTGT+TGG - chr1_3:61989225-61989244 None:intergenic 40.0%
!! TTTGGTGCCGAGTTGAAATT+TGG + chr1_3:61989547-61989566 Msa0131230:intron 40.0%
CTTCTAGACCTTCAAAAAGC+TGG + chr1_3:61989937-61989956 Msa0131230:intron 40.0%
! AAAAAGACTAAGGGTGCGTT+TGG - chr1_3:61989964-61989983 None:intergenic 40.0%
!! CGCACCCTTAGTCTTTTTAT+AGG + chr1_3:61989966-61989985 Msa0131230:intron 40.0%
! GATGCATAGTACTGAGTGTT+TGG - chr1_3:61990118-61990137 None:intergenic 40.0%
CATTACTGCATAGGAAACAC+AGG - chr1_3:61990148-61990167 None:intergenic 40.0%
! AGGAAAGTGCATTACTGCAT+AGG - chr1_3:61990157-61990176 None:intergenic 40.0%
TGCTATAATGCACTCTCCTT+TGG + chr1_3:61990209-61990228 Msa0131230:intron 40.0%
GCTATAATGCACTCTCCTTT+GGG + chr1_3:61990210-61990229 Msa0131230:intron 40.0%
GACAACATGCTTTAACCCAA+AGG - chr1_3:61990228-61990247 None:intergenic 40.0%
TGGGTTAAAGCATGTTGTCA+AGG + chr1_3:61990229-61990248 Msa0131230:intron 40.0%
TGTTGTCAAGGAGCTTAGTT+AGG + chr1_3:61990241-61990260 Msa0131230:intron 40.0%
CTTTCTTTGCGTTACAACAG+TGG - chr1_3:61990297-61990316 None:intergenic 40.0%
TGGGGGATATTAAGTTTAGC+AGG + chr1_3:61990401-61990420 Msa0131230:intron 40.0%
TAGCAGGTGTTCACTCAATT+AGG + chr1_3:61990417-61990436 Msa0131230:intron 40.0%
TTCTACCAACATTGAACCTC+TGG + chr1_3:61990689-61990708 Msa0131230:intron 40.0%
CATACTTCTGATACCTTGTC+AGG + chr1_3:61990768-61990787 Msa0131230:intron 40.0%
! CTTATTTGGTGATTGATCGG+GGG - chr1_3:61990831-61990850 None:intergenic 40.0%
! CCTTATTTGGTGATTGATCG+GGG - chr1_3:61990832-61990851 None:intergenic 40.0%
!! GCCTTATTTGGTGATTGATC+GGG - chr1_3:61990833-61990852 None:intergenic 40.0%
!! GGCCTTATTTGGTGATTGAT+CGG - chr1_3:61990834-61990853 None:intergenic 40.0%
! AAGCAAGATAGAGAGCATGT+AGG - chr1_3:61990951-61990970 None:intergenic 40.0%
! GATTTTGTCACCATTCCTCT+TGG + chr1_3:61990987-61991006 Msa0131230:intron 40.0%
CGTTCATCTTCGTAAACACT+TGG + chr1_3:61991501-61991520 Msa0131230:intron 40.0%
TATGCATGGAATGAACAGGA+CGG + chr1_3:61991539-61991558 Msa0131230:intron 40.0%
CTATGACCTTGCAAAGTTGT+TGG - chr1_3:61991613-61991632 None:intergenic 40.0%
CATCCATTGACACAATGCAT+CGG - chr1_3:61991636-61991655 None:intergenic 40.0%
TCAATATCCAAGGGTGATGT+TGG + chr1_3:61991688-61991707 Msa0131230:CDS 40.0%
GGAACTAGCAACAAAGAATC+TGG + chr1_3:61991716-61991735 Msa0131230:CDS 40.0%
AAGTCGCCGATCTCTAAATA+AGG - chr1_3:61991783-61991802 None:intergenic 40.0%
TATTTAGAGATCGGCGACTT+CGG + chr1_3:61991783-61991802 Msa0131230:CDS 40.0%
GCTTAGGTGCATCGAATATT+GGG - chr1_3:61991955-61991974 None:intergenic 40.0%
ACTGCATATCTCTTACGCTT+AGG - chr1_3:61991971-61991990 None:intergenic 40.0%
TATTGTTGCAGTTCAGATCC+AGG + chr1_3:61992193-61992212 Msa0131230:three_prime_UTR 40.0%
! ATACATACTTGTAGGGTACC+TGG - chr1_3:61992214-61992233 None:intergenic 40.0%
TTGAATCGGTCCTATGTAGA+TGG + chr1_3:61992316-61992335 Msa0131230:three_prime_UTR 40.0%
CCAAATCAGTCCATCTACAT+AGG - chr1_3:61992329-61992348 None:intergenic 40.0%
!! CCTATGTAGATGGACTGATT+TGG + chr1_3:61992326-61992345 Msa0131230:three_prime_UTR 40.0%
!! CATTTTAGACGAGCTTTGTC+CGG + chr1_3:61992484-61992503 Msa0131230:three_prime_UTR 40.0%
GTTGTTGATGTGTGGTTGTG+TGG - chr1_3:61981413-61981432 None:intergenic 45.0%
!! GGTGTTGTTGCATGTGAAAG+TGG - chr1_3:61981490-61981509 None:intergenic 45.0%
! TTTCGGTCACTTTGGTCAAG+TGG + chr1_3:61981668-61981687 Msa0131230:CDS 45.0%
AGGAATGCGGAATGCATCAT+TGG - chr1_3:61981748-61981767 None:intergenic 45.0%
GTGGAAAACGAAGTAGCTTG+AGG - chr1_3:61981822-61981841 None:intergenic 45.0%
! CTTCGTTTTCCACTCCTTCT+TGG + chr1_3:61981829-61981848 Msa0131230:CDS 45.0%
TTGTGGGGTGTGCTTATACA+TGG + chr1_3:61981905-61981924 Msa0131230:intron 45.0%
! GCTAATGGGTAGTGTGTGAT+TGG + chr1_3:61981989-61982008 Msa0131230:intron 45.0%
GGTGCAGTGTGTTAGTTACA+TGG + chr1_3:61982188-61982207 Msa0131230:intron 45.0%
! TTTTGCATTCACGACCTCTC+TGG + chr1_3:61982278-61982297 Msa0131230:intron 45.0%
GCATATTCTAGGCTACTTGG+TGG + chr1_3:61982537-61982556 Msa0131230:intron 45.0%
! TATTCTAGGCTACTTGGTGG+AGG + chr1_3:61982540-61982559 Msa0131230:intron 45.0%
! ACTTGGATTTGGACTGGAAG+AGG + chr1_3:61982786-61982805 Msa0131230:intron 45.0%
GCACCATGATCAGAGAGATA+TGG + chr1_3:61982937-61982956 Msa0131230:intron 45.0%
!!! TCTTTTAGGACTGTCTGGAG+TGG + chr1_3:61982979-61982998 Msa0131230:intron 45.0%
CATGTATGATCTGAAGGCCT+TGG + chr1_3:61983009-61983028 Msa0131230:CDS 45.0%
GGATCATAAGTTTCAGGCAG+TGG - chr1_3:61983082-61983101 None:intergenic 45.0%
GCCTGAAACTTATGATCCTC+AGG + chr1_3:61983084-61983103 Msa0131230:CDS 45.0%
AAATAGTGAGCGACATCCTG+AGG - chr1_3:61983103-61983122 None:intergenic 45.0%
ATACGAAGAGCCACAACATG+GGG - chr1_3:61983136-61983155 None:intergenic 45.0%
CATACGAAGAGCCACAACAT+GGG - chr1_3:61983137-61983156 None:intergenic 45.0%
! CCGTTTTACGTATCAGTAGG+AGG + chr1_3:61983350-61983369 Msa0131230:intron 45.0%
ATAGGGACAAAGGTTTAGGC+AGG + chr1_3:61983410-61983429 Msa0131230:intron 45.0%
ACTGCCTGCATGATACACTT+TGG - chr1_3:61983445-61983464 None:intergenic 45.0%
! ATCTTTTTACGCCACAGTGG+GGG - chr1_3:61983787-61983806 None:intergenic 45.0%
! CATCTTTTTACGCCACAGTG+GGG - chr1_3:61983788-61983807 None:intergenic 45.0%
! CACATCTTTTTACGCCACAG+TGG - chr1_3:61983790-61983809 None:intergenic 45.0%
CACTGTGGCGTAAAAAGATG+TGG + chr1_3:61983788-61983807 Msa0131230:intron 45.0%
CCACAAAAAGCAGAGAGAGA+GGG - chr1_3:61983854-61983873 None:intergenic 45.0%
!!! CCTCTCTCTCTGCTTTTTGT+GGG + chr1_3:61983852-61983871 Msa0131230:intron 45.0%
!!! TTTTAGAGGTGCTGAGTTGG+AGG + chr1_3:61983962-61983981 Msa0131230:intron 45.0%
AACGAGTGATGTGTAGTTGC+GGG + chr1_3:61984013-61984032 Msa0131230:intron 45.0%
GAGCATCCACAATATCGATG+GGG - chr1_3:61984066-61984085 None:intergenic 45.0%
!! CATTGGTGTTGAGATGTCCA+AGG + chr1_3:61984771-61984790 Msa0131230:CDS 45.0%
GCCGCTAAAGTTCGAATAAC+TGG + chr1_3:61985038-61985057 Msa0131230:intron 45.0%
ATCAAATCCCTCCCTTTCCT+AGG + chr1_3:61985129-61985148 Msa0131230:CDS 45.0%
CATAGCAACAGTCCTAGGAA+AGG - chr1_3:61985144-61985163 None:intergenic 45.0%
TACCTGACCAAATGATGCAG+CGG - chr1_3:61985237-61985256 None:intergenic 45.0%
CTTAACCATCTCCTCAGTTG+GGG + chr1_3:61985554-61985573 Msa0131230:intron 45.0%
GCCTTTATGCTGATGAGCTT+GGG + chr1_3:61985614-61985633 Msa0131230:CDS 45.0%
!!! GCGAGGTTTTGTTGGTGAAT+TGG + chr1_3:61985636-61985655 Msa0131230:CDS 45.0%
! TCGAAAGAGAGTTCTGACCA+TGG + chr1_3:61985946-61985965 Msa0131230:CDS 45.0%
ACTCTAGATCTGGATTGAGG+TGG + chr1_3:61986301-61986320 Msa0131230:intron 45.0%
CAAGTTACCAGGATGTGGAT+CGG - chr1_3:61986577-61986596 None:intergenic 45.0%
! AAGGCATCAATTCGCTATGC+TGG + chr1_3:61986749-61986768 Msa0131230:CDS 45.0%
GATATGGATATGGTGAGACC+AGG + chr1_3:61986828-61986847 Msa0131230:CDS 45.0%
TGAGACCAGGGACAAATATC+CGG + chr1_3:61986841-61986860 Msa0131230:CDS 45.0%
CTTAAATTCCACTTCCCCCA+AGG - chr1_3:61987054-61987073 None:intergenic 45.0%
CTTGGGGGAAGTGGAATTTA+AGG + chr1_3:61987052-61987071 Msa0131230:CDS 45.0%
GGGGAAGTGGAATTTAAGGA+TGG + chr1_3:61987056-61987075 Msa0131230:CDS 45.0%
TTCCTGATGTGAAGTTCAGC+AGG + chr1_3:61987081-61987100 Msa0131230:CDS 45.0%
TCCTGATGTGAAGTTCAGCA+GGG + chr1_3:61987082-61987101 Msa0131230:CDS 45.0%
TGGAAATTCCGCCTTCATTG+CGG + chr1_3:61987305-61987324 Msa0131230:intron 45.0%
CAAACCAAAGGCCGCAATTT+AGG - chr1_3:61987346-61987365 None:intergenic 45.0%
!! CAACACAATGAAGGTGTTGG+AGG - chr1_3:61987381-61987400 None:intergenic 45.0%
CTCCAACACCTTCATTGTGT+TGG + chr1_3:61987379-61987398 Msa0131230:intron 45.0%
! AGCCAACACAATGAAGGTGT+TGG - chr1_3:61987384-61987403 None:intergenic 45.0%
CCTCAAAGCCAACACAATGA+AGG - chr1_3:61987390-61987409 None:intergenic 45.0%
!! CCTTCATTGTGTTGGCTTTG+AGG + chr1_3:61987387-61987406 Msa0131230:intron 45.0%
!! TCATTGTGTTGGCTTTGAGG+GGG + chr1_3:61987390-61987409 Msa0131230:intron 45.0%
CCTTACAAAACCGGCATGTA+AGG - chr1_3:61987481-61987500 None:intergenic 45.0%
!!! CCTTACATGCCGGTTTTGTA+AGG + chr1_3:61987478-61987497 Msa0131230:intron 45.0%
GGAGACATCTCTCACTTTAC+AGG - chr1_3:61987594-61987613 None:intergenic 45.0%
GTTTACCTTCGAAAGAGGCT+AGG - chr1_3:61987972-61987991 None:intergenic 45.0%
AGAAGTTTCCGAACGACGTA+GGG - chr1_3:61988213-61988232 None:intergenic 45.0%
TAGAAGTTTCCGAACGACGT+AGG - chr1_3:61988214-61988233 None:intergenic 45.0%
GTCACAAATCCCACTGTTCT+GGG - chr1_3:61988290-61988309 None:intergenic 45.0%
TATCAACCACAGTTCTGTGG+TGG - chr1_3:61988319-61988338 None:intergenic 45.0%
AGAAGGAGTTCCAATGGCAA+AGG + chr1_3:61988622-61988641 Msa0131230:CDS 45.0%
ACATGGAAAGCCTTTGCCAT+TGG - chr1_3:61988635-61988654 None:intergenic 45.0%
GGTATGTCAAAGTGCATGTC+AGG + chr1_3:61988676-61988695 Msa0131230:intron 45.0%
TCTTTAGCAGGGTTCGAAGA+TGG - chr1_3:61988999-61989018 None:intergenic 45.0%
AGCTTGAGGTAAGAGCTTGA+GGG - chr1_3:61989260-61989279 None:intergenic 45.0%
AAGCTTGAGGTAAGAGCTTG+AGG - chr1_3:61989261-61989280 None:intergenic 45.0%
CAAGGAGCTTAGTTAGGTGT+AGG + chr1_3:61990247-61990266 Msa0131230:intron 45.0%
ATCGAGAGAGGCTTGGATAT+AGG + chr1_3:61990270-61990289 Msa0131230:intron 45.0%
TCGAGAGAGGCTTGGATATA+GGG + chr1_3:61990271-61990290 Msa0131230:intron 45.0%
ACAGACCAGAGGTTCAATGT+TGG - chr1_3:61990697-61990716 None:intergenic 45.0%
CCCCGATCAATCACCAAATA+AGG + chr1_3:61990829-61990848 Msa0131230:CDS 45.0%
!! AATGTACCAGCGGCCTTATT+TGG - chr1_3:61990845-61990864 None:intergenic 45.0%
AAAGCGACACCATCTTTGGA+TGG - chr1_3:61990899-61990918 None:intergenic 45.0%
TCTCAAAGCGACACCATCTT+TGG - chr1_3:61990903-61990922 None:intergenic 45.0%
!! AAGATGGTGTCGCTTTGAGA+AGG + chr1_3:61990903-61990922 Msa0131230:CDS 45.0%
AATCAGAGCAATGGTCTCGA+AGG + chr1_3:61991571-61991590 Msa0131230:CDS 45.0%
TGACCTTGCAAAGTTGTTGG+CGG - chr1_3:61991610-61991629 None:intergenic 45.0%
TAGCCGATGCATTGTGTCAA+TGG + chr1_3:61991630-61991649 Msa0131230:CDS 45.0%
ATTTAGAGATCGGCGACTTC+GGG + chr1_3:61991784-61991803 Msa0131230:CDS 45.0%
CGCTTAGGTGCATCGAATAT+TGG - chr1_3:61991956-61991975 None:intergenic 45.0%
! CTTTGAAGGCAATTAGTGCG+AGG + chr1_3:61992076-61992095 Msa0131230:three_prime_UTR 45.0%
TGCGAGGAGGGTAAAATATG+TGG + chr1_3:61992092-61992111 Msa0131230:three_prime_UTR 45.0%
!! ACAATATAATTAAATATTAT+TGG + chr1_3:61985270-61985289 Msa0131230:intron 5.0%
!! TGATAAAAAATTTAAAAATA+TGG - chr1_3:61988754-61988773 None:intergenic 5.0%
CGGAGAGTGAAGAAGATTGG+AGG - chr1_3:61981556-61981575 None:intergenic 50.0%
CTTTGGTCAAGTGGTTCGCA+AGG + chr1_3:61981677-61981696 Msa0131230:CDS 50.0%
TCAAGTGGTTCGCAAGGACA+TGG + chr1_3:61981683-61981702 Msa0131230:CDS 50.0%
ATACCTGGATACCAAGGCTC+AGG - chr1_3:61981855-61981874 None:intergenic 50.0%
CATTCACGACCTCTCTGGAT+TGG + chr1_3:61982283-61982302 Msa0131230:intron 50.0%
ATATGCAGAAGGCCCCTGTT+TGG - chr1_3:61982523-61982542 None:intergenic 50.0%
AGGGGCCTTCTGCATATTCT+AGG + chr1_3:61982526-61982545 Msa0131230:intron 50.0%
TGCAAGGACAGTCAGCAGAA+CGG - chr1_3:61982657-61982676 None:intergenic 50.0%
GCATACGAAGAGCCACAACA+TGG - chr1_3:61983138-61983157 None:intergenic 50.0%
CTTCGTATGCTCGAGGTAGT+TGG + chr1_3:61983148-61983167 Msa0131230:intron 50.0%
TGCCCCACAACATCCACAAT+AGG + chr1_3:61983724-61983743 Msa0131230:intron 50.0%
GCCCCACAACATCCACAATA+GGG + chr1_3:61983725-61983744 Msa0131230:intron 50.0%
CCCCTATTGTGGATGTTGTG+GGG - chr1_3:61983729-61983748 None:intergenic 50.0%
CCCCACAACATCCACAATAG+GGG + chr1_3:61983726-61983745 Msa0131230:intron 50.0%
CCCCCTATTGTGGATGTTGT+GGG - chr1_3:61983730-61983749 None:intergenic 50.0%
CCCACAACATCCACAATAGG+GGG + chr1_3:61983727-61983746 Msa0131230:intron 50.0%
ACCCCCTATTGTGGATGTTG+TGG - chr1_3:61983731-61983750 None:intergenic 50.0%
CAGAGAGAGAGGGAGAGAAA+TGG - chr1_3:61983844-61983863 None:intergenic 50.0%
!!! CCCTCTCTCTCTGCTTTTTG+TGG + chr1_3:61983851-61983870 Msa0131230:intron 50.0%
CCCACAAAAAGCAGAGAGAG+AGG - chr1_3:61983855-61983874 None:intergenic 50.0%
! GGTGCTGAGTTGGAGGAATT+AGG + chr1_3:61983969-61983988 Msa0131230:intron 50.0%
ACCCACTTAGGCACCCAAAA+GGG + chr1_3:61984036-61984055 Msa0131230:intron 50.0%
!! TCCCTTTTGGGTGCCTAAGT+GGG - chr1_3:61984040-61984059 None:intergenic 50.0%
CGGTCAGTATTCGGACTTCA+GGG + chr1_3:61984396-61984415 Msa0131230:CDS 50.0%
! TTGGTCAGTCACTTTCCACG+AGG + chr1_3:61984740-61984759 Msa0131230:CDS 50.0%
TCCACGAGGCCAGATATCAT+TGG + chr1_3:61984754-61984773 Msa0131230:CDS 50.0%
ACCAATGATATCTGGCCTCG+TGG - chr1_3:61984758-61984777 None:intergenic 50.0%
CAACAGTCCTAGGAAAGGGA+GGG - chr1_3:61985139-61985158 None:intergenic 50.0%
GCTCATCAGCATAAAGGCGA+GGG - chr1_3:61985612-61985631 None:intergenic 50.0%
AGCTCATCAGCATAAAGGCG+AGG - chr1_3:61985613-61985632 None:intergenic 50.0%
CGCCTTTATGCTGATGAGCT+TGG + chr1_3:61985613-61985632 Msa0131230:CDS 50.0%
GCCCAAGCTCATCAGCATAA+AGG - chr1_3:61985618-61985637 None:intergenic 50.0%
! AGAGAGTTCTGACCATGGAG+TGG + chr1_3:61985951-61985970 Msa0131230:CDS 50.0%
! AGTTCTGACCATGGAGTGGA+TGG + chr1_3:61985955-61985974 Msa0131230:CDS 50.0%
CTAGATCTGGATTGAGGTGG+TGG + chr1_3:61986304-61986323 Msa0131230:intron 50.0%
AACTTGCGCTGCACTTCATC+AGG + chr1_3:61986591-61986610 Msa0131230:CDS 50.0%
ACAAGCCGGATATTTGTCCC+TGG - chr1_3:61986849-61986868 None:intergenic 50.0%
ACCCTGCTGAACTTCACATC+AGG - chr1_3:61987086-61987105 None:intergenic 50.0%
CAAAACCGGCATGTAAGGTG+AGG - chr1_3:61987476-61987495 None:intergenic 50.0%
GGATGAGATAGGGCCTGAAA+AGG - chr1_3:61987629-61987648 None:intergenic 50.0%
AGGCCCTATCTCATCCAATG+TGG + chr1_3:61987633-61987652 Msa0131230:intron 50.0%
GAAGTTTCCGAACGACGTAG+GGG - chr1_3:61988212-61988231 None:intergenic 50.0%
CAGAAAACTCAGCCGCAACA+AGG + chr1_3:61988235-61988254 Msa0131230:CDS 50.0%
GGTCACAAATCCCACTGTTC+TGG - chr1_3:61988291-61988310 None:intergenic 50.0%
!! CACAGTTCTGTGGTGGACTA+TGG - chr1_3:61988312-61988331 None:intergenic 50.0%
CATAGTCCACCACAGAACTG+TGG + chr1_3:61988310-61988329 Msa0131230:intron 50.0%
TGCCCCTACTCTCAAGAACA+TGG - chr1_3:61988652-61988671 None:intergenic 50.0%
TCTTGAGAGTAGGGGCAACT+AGG + chr1_3:61988655-61988674 Msa0131230:CDS 50.0%
! CGTTTGGCCCAGCTTTTTGA+AGG - chr1_3:61989948-61989967 None:intergenic 50.0%
GTTAGGTGTAGGATCGAGAG+AGG + chr1_3:61990258-61990277 Msa0131230:intron 50.0%
GTTGCAAGGCTTTCCTGACA+AGG - chr1_3:61990784-61990803 None:intergenic 50.0%
CAATCACCAAATAAGGCCGC+TGG + chr1_3:61990836-61990855 Msa0131230:CDS 50.0%
! GCGACAATTGCCCCATCTTT+TGG + chr1_3:61991241-61991260 Msa0131230:intron 50.0%
AGAGCAATGGTCTCGAAGGA+GGG + chr1_3:61991575-61991594 Msa0131230:CDS 50.0%
AATGGTCTCGAAGGAGGGAA+AGG + chr1_3:61991580-61991599 Msa0131230:CDS 50.0%
CATCCGCCAACAACTTTGCA+AGG + chr1_3:61991604-61991623 Msa0131230:CDS 50.0%
CCATTAGCCAACATCACCCT+TGG - chr1_3:61991698-61991717 None:intergenic 50.0%
! CCAAGGGTGATGTTGGCTAA+TGG + chr1_3:61991695-61991714 Msa0131230:CDS 50.0%
TACTGATGCTGCGGTTCTGT+TGG + chr1_3:61991849-61991868 Msa0131230:CDS 50.0%
! CTTCAGCTTTGGCAAGCCAT+CGG + chr1_3:61991897-61991916 Msa0131230:CDS 50.0%
! TTCAGCTTTGGCAAGCCATC+GGG + chr1_3:61991898-61991917 Msa0131230:CDS 50.0%
TGAAGGCAATTAGTGCGAGG+AGG + chr1_3:61992079-61992098 Msa0131230:three_prime_UTR 50.0%
GAAGGCAATTAGTGCGAGGA+GGG + chr1_3:61992080-61992099 Msa0131230:three_prime_UTR 50.0%
GGGCGGAGAGTGAAGAAGAT+TGG - chr1_3:61981559-61981578 None:intergenic 55.0%
TCTTCTTCACTCTCCGCCCA+TGG + chr1_3:61981560-61981579 Msa0131230:exon 55.0%
CTCCGTCACTCCCCTTTGTA+CGG + chr1_3:61981598-61981617 Msa0131230:CDS 55.0%
TCCGTCACTCCCCTTTGTAC+GGG + chr1_3:61981599-61981618 Msa0131230:CDS 55.0%
TCGTTGTGGCCCGTACAAAG+GGG - chr1_3:61981611-61981630 None:intergenic 55.0%
GTCGTTGTGGCCCGTACAAA+GGG - chr1_3:61981612-61981631 None:intergenic 55.0%
TACCAAGGCTCAGGCCAAGA+AGG - chr1_3:61981846-61981865 None:intergenic 55.0%
AAGAGCCACAACATGGGGTC+TGG - chr1_3:61983131-61983150 None:intergenic 55.0%
TGTGGCTCTTCGTATGCTCG+AGG + chr1_3:61983141-61983160 Msa0131230:CDS 55.0%
AGGGGAAGAACCCCCTATTG+TGG - chr1_3:61983740-61983759 None:intergenic 55.0%
!! GGGGAGCCTATTTAGCTTGG+TGG - chr1_3:61983768-61983787 None:intergenic 55.0%
GTGGGGGAGCCTATTTAGCT+TGG - chr1_3:61983771-61983790 None:intergenic 55.0%
CTAAATAGGCTCCCCCACTG+TGG + chr1_3:61983773-61983792 Msa0131230:intron 55.0%
TGTGGGCCCCACTTAGTGAT+TGG + chr1_3:61983869-61983888 Msa0131230:intron 55.0%
TGTAGTTGCGGGACCCACTT+AGG + chr1_3:61984024-61984043 Msa0131230:intron 55.0%
GACCCACTTAGGCACCCAAA+AGG + chr1_3:61984035-61984054 Msa0131230:intron 55.0%
!! CTCCCTTTTGGGTGCCTAAG+TGG - chr1_3:61984041-61984060 None:intergenic 55.0%
! TCGATGGGGCTCTCCCTTTT+GGG - chr1_3:61984052-61984071 None:intergenic 55.0%
! ATCGATGGGGCTCTCCCTTT+TGG - chr1_3:61984053-61984072 None:intergenic 55.0%
GGAGAGCCCCATCGATATTG+TGG + chr1_3:61984057-61984076 Msa0131230:intron 55.0%
TTCCTCCTTTGCCTCTGCTG+CGG + chr1_3:61984376-61984395 Msa0131230:CDS 55.0%
CCTCTGCTGCGGTCAGTATT+CGG + chr1_3:61984387-61984406 Msa0131230:CDS 55.0%
GCGGTCAGTATTCGGACTTC+AGG + chr1_3:61984395-61984414 Msa0131230:CDS 55.0%
GCAACAGTCCTAGGAAAGGG+AGG - chr1_3:61985140-61985159 None:intergenic 55.0%
GGAAGAATTAGGAGCTCCCC+TGG + chr1_3:61985175-61985194 Msa0131230:CDS 55.0%
CCAAATGATGCAGCGGCTAC+AGG - chr1_3:61985230-61985249 None:intergenic 55.0%
CCTGTAGCCGCTGCATCATT+TGG + chr1_3:61985227-61985246 Msa0131230:CDS 55.0%
AGCCGCTGCATCATTTGGTC+AGG + chr1_3:61985232-61985251 Msa0131230:CDS 55.0%
! TCCTAATTTGCGGCACGTGG+TGG + chr1_3:61985424-61985443 Msa0131230:CDS 55.0%
ACCACCACGTGCCGCAAATT+AGG - chr1_3:61985428-61985447 None:intergenic 55.0%
! TTTTGCAGCAGCCCCAACTG+AGG - chr1_3:61985568-61985587 None:intergenic 55.0%
GCGAGGGTCACTCTTTCTCT+TGG - chr1_3:61985596-61985615 None:intergenic 55.0%
TATGCTGATGAGCTTGGGCG+AGG + chr1_3:61985619-61985638 Msa0131230:CDS 55.0%
!! GAGCTTGGGCGAGGTTTTGT+TGG + chr1_3:61985628-61985647 Msa0131230:CDS 55.0%
CTGACCATGGAGTGGATGGT+CGG + chr1_3:61985959-61985978 Msa0131230:CDS 55.0%
TTCACCGACCATCCACTCCA+TGG - chr1_3:61985966-61985985 None:intergenic 55.0%
ATACACGCCGATCCACATCC+TGG + chr1_3:61986567-61986586 Msa0131230:CDS 55.0%
CAGCGCAAGTTACCAGGATG+TGG - chr1_3:61986582-61986601 None:intergenic 55.0%
GAAGTGCAGCGCAAGTTACC+AGG - chr1_3:61986588-61986607 None:intergenic 55.0%
TCAGGAACTGGAACAGGCCT+TGG + chr1_3:61987034-61987053 Msa0131230:intron 55.0%
CAGGAACTGGAACAGGCCTT+GGG + chr1_3:61987035-61987054 Msa0131230:intron 55.0%
AGGAACTGGAACAGGCCTTG+GGG + chr1_3:61987036-61987055 Msa0131230:intron 55.0%
CAATTTAGGCGACTAGGGGC+GGG - chr1_3:61987332-61987351 None:intergenic 55.0%
GCAATTTAGGCGACTAGGGG+CGG - chr1_3:61987333-61987352 None:intergenic 55.0%
GCCCCTAGTCGCCTAAATTG+CGG + chr1_3:61987332-61987351 Msa0131230:intron 55.0%
GCCGCAATTTAGGCGACTAG+GGG - chr1_3:61987336-61987355 None:intergenic 55.0%
GGCCGCAATTTAGGCGACTA+GGG - chr1_3:61987337-61987356 None:intergenic 55.0%
AGGCCGCAATTTAGGCGACT+AGG - chr1_3:61987338-61987357 None:intergenic 55.0%
GTCGCCTAAATTGCGGCCTT+TGG + chr1_3:61987339-61987358 Msa0131230:intron 55.0%
!! TTGTGTTGGCTTTGAGGGGG+TGG + chr1_3:61987393-61987412 Msa0131230:intron 55.0%
GCACTCCTCACCTTACATGC+CGG + chr1_3:61987468-61987487 Msa0131230:intron 55.0%
CGATCCCTAGCCTCTTTCGA+AGG + chr1_3:61987964-61987983 Msa0131230:CDS 55.0%
TTTCCGAACGACGTAGGGGT+AGG - chr1_3:61988208-61988227 None:intergenic 55.0%
CGTAGTCTGCACTCTGCAGA+TGG - chr1_3:61990013-61990032 None:intergenic 55.0%
GTGTAGGATCGAGAGAGGCT+TGG + chr1_3:61990263-61990282 Msa0131230:intron 55.0%
CAGAGCAATGGTCTCGAAGG+AGG + chr1_3:61991574-61991593 Msa0131230:CDS 55.0%
ACAGCGACAGAACAACCCGA+TGG - chr1_3:61991916-61991935 None:intergenic 55.0%
GGTTGTTCTGTCGCTGTCTG+AGG + chr1_3:61991919-61991938 Msa0131230:CDS 55.0%
! TCGCTGTCTGAGGCTTACCT+GGG + chr1_3:61991929-61991948 Msa0131230:CDS 55.0%
GTGCATCGAATATTGGGCCC+AGG - chr1_3:61991949-61991968 None:intergenic 55.0%
CGTACAAAGGGGAGTGACGG+AGG - chr1_3:61981600-61981619 None:intergenic 60.0%
GCCCGTACAAAGGGGAGTGA+CGG - chr1_3:61981603-61981622 None:intergenic 60.0%
CGTCGTTGTGGCCCGTACAA+AGG - chr1_3:61981613-61981632 None:intergenic 60.0%
CTTACTGGACGGCGTCGTTG+TGG - chr1_3:61981625-61981644 None:intergenic 60.0%
AGGCTCAGGCCAAGAAGGAG+TGG - chr1_3:61981841-61981860 None:intergenic 60.0%
CTCCTTCTTGGCCTGAGCCT+TGG + chr1_3:61981841-61981860 Msa0131230:CDS 60.0%
TGGCCTGAGCCTTGGTATCC+AGG + chr1_3:61981849-61981868 Msa0131230:CDS 60.0%
CAGTGCCAGACCCCATGTTG+TGG + chr1_3:61983123-61983142 Msa0131230:CDS 60.0%
ACTGACCGCAGCAGAGGCAA+AGG - chr1_3:61984384-61984403 None:intergenic 60.0%
CCGAATACTGACCGCAGCAG+AGG - chr1_3:61984390-61984409 None:intergenic 60.0%
! GCGTCCTAATTTGCGGCACG+TGG + chr1_3:61985421-61985440 Msa0131230:CDS 60.0%
! ATTTGCGGCACGTGGTGGTG+CGG + chr1_3:61985429-61985448 Msa0131230:CDS 60.0%
AGCAGCCCCAACTGAGGAGA+TGG - chr1_3:61985562-61985581 None:intergenic 60.0%
GGAACTGGAACAGGCCTTGG+GGG + chr1_3:61987037-61987056 Msa0131230:intron 60.0%
CTGCCTACCCCTACGTCGTT+CGG + chr1_3:61988202-61988221 Msa0131230:CDS 60.0%
! GTCGCTGTCTGAGGCTTACC+TGG + chr1_3:61991928-61991947 Msa0131230:CDS 60.0%
TCACTCTCCGCCCATGGCGA+CGG + chr1_3:61981566-61981585 Msa0131230:exon 65.0%
! GGTGCTGTCACCGTCGCCAT+GGG - chr1_3:61981579-61981598 None:intergenic 65.0%
! AGGTGCTGTCACCGTCGCCA+TGG - chr1_3:61981580-61981599 None:intergenic 65.0%
GACCGCAGCAGAGGCAAAGG+AGG - chr1_3:61984381-61984400 None:intergenic 65.0%
! TTTGCGGCACGTGGTGGTGC+GGG + chr1_3:61985430-61985449 Msa0131230:CDS 65.0%
GGAACAGGCCTTGGGGGAAG+TGG + chr1_3:61987043-61987062 Msa0131230:CDS 65.0%
TAGGGGCGGGACCGCAATGA+AGG - chr1_3:61987319-61987338 None:intergenic 65.0%
GCTGTCACCGTCGCCATGGG+CGG - chr1_3:61981576-61981595 None:intergenic 70.0%
GGGCGGGACCGCAATGAAGG+CGG - chr1_3:61987316-61987335 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr1_3 gene 61981299 61992512 61981299 ID=Msa0131230;Name=Msa0131230
chr1_3 mRNA 61981299 61992512 61981299 ID=Msa0131230-mRNA-1;Parent=Msa0131230;Name=Msa0131230-mRNA-1;_AED=0.10;_eAED=0.10;_QI=280|1|1|1|1|1|16|512|819
chr1_3 exon 61981299 61981870 61981299 ID=Msa0131230-mRNA-1:exon:20599;Parent=Msa0131230-mRNA-1
chr1_3 exon 61982987 61983162 61982987 ID=Msa0131230-mRNA-1:exon:20600;Parent=Msa0131230-mRNA-1
chr1_3 exon 61984371 61984536 61984371 ID=Msa0131230-mRNA-1:exon:20601;Parent=Msa0131230-mRNA-1
chr1_3 exon 61984740 61984792 61984740 ID=Msa0131230-mRNA-1:exon:20602;Parent=Msa0131230-mRNA-1
chr1_3 exon 61985110 61985253 61985110 ID=Msa0131230-mRNA-1:exon:20603;Parent=Msa0131230-mRNA-1
chr1_3 exon 61985371 61985475 61985371 ID=Msa0131230-mRNA-1:exon:20604;Parent=Msa0131230-mRNA-1
chr1_3 exon 61985571 61985696 61985571 ID=Msa0131230-mRNA-1:exon:20605;Parent=Msa0131230-mRNA-1
chr1_3 exon 61985890 61986078 61985890 ID=Msa0131230-mRNA-1:exon:20606;Parent=Msa0131230-mRNA-1
chr1_3 exon 61986516 61986622 61986516 ID=Msa0131230-mRNA-1:exon:20607;Parent=Msa0131230-mRNA-1
chr1_3 exon 61986713 61986875 61986713 ID=Msa0131230-mRNA-1:exon:20608;Parent=Msa0131230-mRNA-1
chr1_3 exon 61987038 61987103 61987038 ID=Msa0131230-mRNA-1:exon:20609;Parent=Msa0131230-mRNA-1
chr1_3 exon 61987892 61987985 61987892 ID=Msa0131230-mRNA-1:exon:20610;Parent=Msa0131230-mRNA-1
chr1_3 exon 61988160 61988272 61988160 ID=Msa0131230-mRNA-1:exon:20611;Parent=Msa0131230-mRNA-1
chr1_3 exon 61988606 61988676 61988606 ID=Msa0131230-mRNA-1:exon:20612;Parent=Msa0131230-mRNA-1
chr1_3 exon 61990790 61990940 61990790 ID=Msa0131230-mRNA-1:exon:20613;Parent=Msa0131230-mRNA-1
chr1_3 exon 61991557 61992512 61991557 ID=Msa0131230-mRNA-1:exon:20614;Parent=Msa0131230-mRNA-1
chr1_3 five_prime_UTR 61981299 61981578 61981299 ID=Msa0131230-mRNA-1:five_prime_utr;Parent=Msa0131230-mRNA-1
chr1_3 CDS 61981579 61981870 61981579 ID=Msa0131230-mRNA-1:cds;Parent=Msa0131230-mRNA-1
chr1_3 CDS 61982987 61983162 61982987 ID=Msa0131230-mRNA-1:cds;Parent=Msa0131230-mRNA-1
chr1_3 CDS 61984371 61984536 61984371 ID=Msa0131230-mRNA-1:cds;Parent=Msa0131230-mRNA-1
chr1_3 CDS 61984740 61984792 61984740 ID=Msa0131230-mRNA-1:cds;Parent=Msa0131230-mRNA-1
chr1_3 CDS 61985110 61985253 61985110 ID=Msa0131230-mRNA-1:cds;Parent=Msa0131230-mRNA-1
chr1_3 CDS 61985371 61985475 61985371 ID=Msa0131230-mRNA-1:cds;Parent=Msa0131230-mRNA-1
chr1_3 CDS 61985571 61985696 61985571 ID=Msa0131230-mRNA-1:cds;Parent=Msa0131230-mRNA-1
chr1_3 CDS 61985890 61986078 61985890 ID=Msa0131230-mRNA-1:cds;Parent=Msa0131230-mRNA-1
chr1_3 CDS 61986516 61986622 61986516 ID=Msa0131230-mRNA-1:cds;Parent=Msa0131230-mRNA-1
chr1_3 CDS 61986713 61986875 61986713 ID=Msa0131230-mRNA-1:cds;Parent=Msa0131230-mRNA-1
chr1_3 CDS 61987038 61987103 61987038 ID=Msa0131230-mRNA-1:cds;Parent=Msa0131230-mRNA-1
chr1_3 CDS 61987892 61987985 61987892 ID=Msa0131230-mRNA-1:cds;Parent=Msa0131230-mRNA-1
chr1_3 CDS 61988160 61988272 61988160 ID=Msa0131230-mRNA-1:cds;Parent=Msa0131230-mRNA-1
chr1_3 CDS 61988606 61988676 61988606 ID=Msa0131230-mRNA-1:cds;Parent=Msa0131230-mRNA-1
chr1_3 CDS 61990790 61990940 61990790 ID=Msa0131230-mRNA-1:cds;Parent=Msa0131230-mRNA-1
chr1_3 CDS 61991557 61992000 61991557 ID=Msa0131230-mRNA-1:cds;Parent=Msa0131230-mRNA-1
chr1_3 three_prime_UTR 61992001 61992512 61992001 ID=Msa0131230-mRNA-1:three_prime_utr;Parent=Msa0131230-mRNA-1
Gene Sequence

>Msa0131230

ATGGCGACGGTGACAGCACCTCCGTCACTCCCCTTTGTACGGGCCACAACGACGCCGTCCAGTAAGAAGAAGAAGAAGAATCATTCGAATTTCGGTCACTTTGGTCAAGTGGTTCGCAAGGACATGGAGTTTCTTAAAAGAGGATTTAACAATGGTGTTGAGTGGGCCAATGATGCATTCCGCATTCCTCAAATTGCCAAGAAAGTTGATGACTTTGTTTGGCTTCGAAATCTTGAAAACCCTCAAGCTACTTCGTTTTCCACTCCTTCTTGGCCTGAGCCTTGGTATCCAGGACTGTCTGGAGTGGATTTGCTCATGTATGATCTGAAGGCCTTGGAAGCATATGCTAGTTACTTCTATCATTTGTCTAAGATTTGGTCAAAGCCACTGCCTGAAACTTATGATCCTCAGGATGTCGCTCACTATTTCAGTGCCAGACCCCATGTTGTGGCTCTTCGTATGCTCGAGGTATTTTCCTCCTTTGCCTCTGCTGCGGTCAGTATTCGGACTTCAGGGTTAAGAAAATTTCTACCAATAAATGCAGAAGGGGATATGGACGATAAAACATCTGAATATAATTTTGGGTTGGTTTTAAAGGAAACAATGCTTAATCTTGGCCCCACATTTATAAAAGTTGGTCAGTCACTTTCCACGAGGCCAGATATCATTGGTGTTGAGATGTCCAAGGCATTGTCAGAATTGCATGATCAAATCCCTCCCTTTCCTAGGACTGTTGCTATGAAGATTCTTGAGGAAGAATTAGGAGCTCCCCTGGAATCATTTTTCAGCTACATTTCTGAGGAACCTGTAGCCGCTGCATCATTTGGTCAGGTTTACTTTGCCCGTACTATTGATGGTGTTAATGTTGCTGTAAAAGTTCAGCGTCCTAATTTGCGGCACGTGGTGGTGCGGGATATCTACATTCTTCGCCTTGGGTTGGGGCTGCTGCAAAAGATTGCCAAGAGAAAGAGTGACCCTCGCCTTTATGCTGATGAGCTTGGGCGAGGTTTTGTTGGTGAATTGGATTACACTTTAGAGGCAGCAAATGCATTGAAGTTTCGGGAAGTTCACTCGTCATTTTCTTTCATGCGCGTGCCAAAAATATTTTTACATTTAAGTCGAAAGAGAGTTCTGACCATGGAGTGGATGGTCGGTGAAAGTCCAACAGATTTAATCTCTGTATCTACCGGAAACTCTACTGAATATTCAGATAGGCAAAAAGTAGATGCAAAAAGGCGTCTACTTGATCTGGTCAATAAAGGTGTTGAAGCAACATTGGTTCAACTTCTTGAAACGGGCTTAATACACGCCGATCCACATCCTGGTAACTTGCGCTGCACTTCATCAGGAGAAATAGGGTTTTTGGATTTTGGTTTGCTCTGTCAAATGGAAAAAAGGCATCAATTCGCTATGCTGGCTTCAATAGTTCATATAGTAAACGGTGACTGGGCATCTCTTGTCAACGCTCTGATTGATATGGATATGGTGAGACCAGGGACAAATATCCGGCTTGTTACCATGGAACTGGAACAGGCCTTGGGGGAAGTGGAATTTAAGGATGGAATTCCTGATGTGAAGTTCAGCAGGGTTCTGGGAAAGATTTTGTCTGTAGCATTCAAGTATCATTTCCGTATGCCAGCATATTATACACTTGTCTTACGATCCCTAGCCTCTTTCGAAGGTTTGGCTATAGCTGCAGATAAAAAATTCAAGACTTTTGAAGCTGCCTACCCCTACGTCGTTCGGAAACTTCTAACAGAAAACTCAGCCGCAACAAGGAAAATATTGCATTCGGTACTTCTAAATCGAAAGAAGGAGTTCCAATGGCAAAGGCTTTCCATGTTCTTGAGAGTAGGGGCAACTAGGAAAGCCTTGCAACTAGTAACTTCAAATAGTGAGACTTCCCCCGATCAATCACCAAATAAGGCCGCTGGTACATTTGATATTGCATACTTGATCTTGACGATTTTACCATCCAAAGATGGTGTCGCTTTGAGAAGGCTTCTCATGACTGCTGACGGAGCTTCAATAATCAGAGCAATGGTCTCGAAGGAGGGAAAGGTCATCCGCCAACAACTTTGCAAGGTCATAGCCGATGCATTGTGTCAATGGATGATTAAATTATGTGGACAAGGAGTTACAGATACTCAATATCCAAGGGTGATGTTGGCTAATGGAACTAGCAACAAAGAATCTGGTCGATCTACTCGATCATCTTCGCCTGCATATGATTATATTTCCTTATTTAGAGATCGGCGACTTCGGGTGATATTTTCTAAGGTTTTGAAATCTGCAAGCAGTCATAAAATACTGATGCTGCGGTTCTGTTGGTCTTCCCTTGTTATAATCATTACAGCTTCAGCTTTGGCAAGCCATCGGGTTGTTCTGTCGCTGTCTGAGGCTTACCTGGGCCCAATATTCGATGCACCTAAGCGTAAGAGATATGCAGTCAGTGCATGA
Protein sequence

>Msa0131230

MATVTAPPSLPFVRATTTPSSKKKKKNHSNFGHFGQVVRKDMEFLKRGFNNGVEWANDAFRIPQIAKKVDDFVWLRNLENPQATSFSTPSWPEPWYPGLSGVDLLMYDLKALEAYASYFYHLSKIWSKPLPETYDPQDVAHYFSARPHVVALRMLEVFSSFASAAVSIRTSGLRKFLPINAEGDMDDKTSEYNFGLVLKETMLNLGPTFIKVGQSLSTRPDIIGVEMSKALSELHDQIPPFPRTVAMKILEEELGAPLESFFSYISEEPVAAASFGQVYFARTIDGVNVAVKVQRPNLRHVVVRDIYILRLGLGLLQKIAKRKSDPRLYADELGRGFVGELDYTLEAANALKFREVHSSFSFMRVPKIFLHLSRKRVLTMEWMVGESPTDLISVSTGNSTEYSDRQKVDAKRRLLDLVNKGVEATLVQLLETGLIHADPHPGNLRCTSSGEIGFLDFGLLCQMEKRHQFAMLASIVHIVNGDWASLVNALIDMDMVRPGTNIRLVTMELEQALGEVEFKDGIPDVKFSRVLGKILSVAFKYHFRMPAYYTLVLRSLASFEGLAIAADKKFKTFEAAYPYVVRKLLTENSAATRKILHSVLLNRKKEFQWQRLSMFLRVGATRKALQLVTSNSETSPDQSPNKAAGTFDIAYLILTILPSKDGVALRRLLMTADGASIIRAMVSKEGKVIRQQLCKVIADALCQWMIKLCGQGVTDTQYPRVMLANGTSNKESGRSTRSSSPAYDYISLFRDRRLRVIFSKVLKSASSHKILMLRFCWSSLVIIITASALASHRVVLSLSEAYLGPIFDAPKRKRYAVSA*