AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0217300


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0217300 MtrunA17_Chr2g0319111 96.392 194 7 0 1 194 1 194 5.57e-138 383
Msa0217300 MtrunA17_Chr1g0169641 37.500 88 54 1 76 163 18 104 7.92e-12 60.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0217300 AT5G54600.1 72.941 170 45 1 25 193 24 193 1.38e-87 256
Msa0217300 AT5G54600.2 64.118 170 41 2 25 193 24 174 2.41e-70 212
Msa0217300 AT5G23535.2 36.170 94 59 1 76 169 18 110 1.08e-11 60.8
Msa0217300 AT5G23535.1 36.170 94 59 1 76 169 18 110 1.08e-11 60.8

Find 52 sgRNAs with CRISPR-Local

Find 202 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCTGCTTCTGATAATGATTT+TGG 0.110324 2_1:-64128836 None:intergenic
CCATACACAACTTGAGTAAT+TGG 0.198248 2_1:+64132525 Msa0217300:three_prime_UTR
GGACATGAAAAGGGTCAAAT+TGG 0.250978 2_1:+64131745 Msa0217300:CDS
CTCTCTTCCAACTCTTTCTT+CGG 0.281804 2_1:+64128956 Msa0217300:CDS
ATTATGCTGTGTTATTGTTT+TGG 0.299061 2_1:+64132487 Msa0217300:three_prime_UTR
CACTCTCTCTCCTCTTCTTC+CGG 0.354334 2_1:+64128997 Msa0217300:CDS
AGTAGAGAAGAGGGAGAACC+AGG 0.356106 2_1:+64131844 Msa0217300:CDS
TGCCTTGAATTTCAGATTGA+AGG 0.361025 2_1:+64132185 Msa0217300:intron
CACAAATTGCATGTTAAAGT+TGG 0.369050 2_1:+64131700 Msa0217300:CDS
TGATTGATAGTGTAGAGAAT+TGG 0.369373 2_1:+64132327 Msa0217300:CDS
AACAACTGCTTCAGTTTGTT+TGG 0.381969 2_1:-64132369 None:intergenic
AACTCTCAATGTAGACTTCT+CGG 0.386258 2_1:+64132635 Msa0217300:intron
GACATGAAAAGGGTCAAATT+GGG 0.420388 2_1:+64131746 Msa0217300:CDS
TGTAACACTGGAAGGCTGTT+TGG 0.423940 2_1:-64131679 None:intergenic
AGTCATATCAGGACATGAAA+AGG 0.426998 2_1:+64131735 Msa0217300:CDS
GATACTGTGAAAGTCATATC+AGG 0.429641 2_1:+64131724 Msa0217300:CDS
CCAATTACTCAAGTTGTGTA+TGG 0.434585 2_1:-64132525 None:intergenic
CATGTAAAGAGTAGAGAAGA+GGG 0.448715 2_1:+64131835 Msa0217300:CDS
GAGAGAGTGATGGGAGAGAG+AGG 0.454990 2_1:-64128983 None:intergenic
AGAAGAGGAGAGAGAGTGAT+GGG 0.472459 2_1:-64128992 None:intergenic
ATAACCTTGTTTATTTGCCC+TGG 0.480818 2_1:-64131862 None:intergenic
AAGAATGTCGCGAGCCGTGT+AGG 0.506736 2_1:+64132248 Msa0217300:CDS
AGAGAGTGAGAGTGAGGTCA+TGG 0.510092 2_1:-64128939 None:intergenic
GTTGGAAGAGAGTGAGAGTG+AGG 0.510745 2_1:-64128945 None:intergenic
AACAACAACAATGGTAGCTA+TGG 0.514791 2_1:+64128895 Msa0217300:exon
GTCATATCAGGACATGAAAA+GGG 0.526144 2_1:+64131736 Msa0217300:CDS
GCAGAAGCAGAAAGAAGAAG+AGG 0.532761 2_1:+64128854 Msa0217300:five_prime_UTR
AACAATGGTAGCTATGGCTA+TGG 0.541534 2_1:+64128901 Msa0217300:exon
AGCAATGTCGTATTGTAATG+AGG 0.546477 2_1:+64131182 Msa0217300:CDS
TTTCTGGCAGCTTAAACGAT+GGG 0.550046 2_1:+64131639 Msa0217300:intron
ACATGCAATTTGTGTAACAC+TGG 0.551056 2_1:-64131691 None:intergenic
GAATGAAGTACCGGAAGAAG+AGG 0.551661 2_1:-64129007 None:intergenic
ATACGACATTGCTTATCTGT+CGG 0.561688 2_1:-64131172 None:intergenic
TGAATTAATATAGTAAAACT+AGG 0.562139 2_1:-64132396 None:intergenic
GCAATGTCGTATTGTAATGA+GGG 0.573580 2_1:+64131183 Msa0217300:CDS
AAGAAGAGGAGAGAGAGTGA+TGG 0.583328 2_1:-64128993 None:intergenic
AGGCTGTCCGAAGAAAGAGT+TGG 0.600014 2_1:-64128963 None:intergenic
GTAGAGAAGAGGGAGAACCA+GGG 0.600154 2_1:+64131845 Msa0217300:CDS
GGTCATAAAGTTCTTGACAA+TGG 0.600337 2_1:+64132269 Msa0217300:CDS
GCATGTAAAGAGTAGAGAAG+AGG 0.600823 2_1:+64131834 Msa0217300:CDS
CACTGTTACAACAACAACAA+TGG 0.606240 2_1:+64128886 Msa0217300:exon
ACATGAAAAGGGTCAAATTG+GGG 0.609646 2_1:+64131747 Msa0217300:CDS
CTTCTCGGTGCATCTGACAA+AGG 0.613254 2_1:+64132650 Msa0217300:three_prime_UTR
GCTTAAACGATGGGAGCGAA+AGG 0.613662 2_1:+64131648 Msa0217300:intron
CAAGAACTTTATGACCTACA+CGG 0.617107 2_1:-64132262 None:intergenic
AGAGAATTGGAAGAAACTGA+AGG 0.625300 2_1:+64132340 Msa0217300:CDS
CATTGTTGTTGTTGTAACAG+TGG 0.648195 2_1:-64128885 None:intergenic
GCAATTTGTGTAACACTGGA+AGG 0.648985 2_1:-64131687 None:intergenic
ATCACATTTGAACTGTGGAT+AGG 0.663323 2_1:-64132209 None:intergenic
AGAGCATCACATTTGAACTG+TGG 0.672540 2_1:-64132214 None:intergenic
AGAACCAGGGCAAATAAACA+AGG 0.674994 2_1:+64131858 Msa0217300:CDS
TGAAAAGGGTCAAATTGGGG+AGG 0.693144 2_1:+64131750 Msa0217300:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTATTTTATTTTATTTTAT+TGG + chr2_1:64129192-64129211 Msa0217300:intron 0.0%
!!! AAGAACATATATTTTTATAA+GGG - chr2_1:64129702-64129721 None:intergenic 10.0%
!!! AAAGAACATATATTTTTATA+AGG - chr2_1:64129703-64129722 None:intergenic 10.0%
!! ATAAAATTAAAGAAATTCTA+AGG - chr2_1:64131319-64131338 None:intergenic 10.0%
!!! TTTATGATTTTTGTTTTTTT+TGG + chr2_1:64132122-64132141 Msa0217300:intron 10.0%
!!! GTTTCAATTTTTATTATTCT+AGG + chr2_1:64129083-64129102 Msa0217300:intron 15.0%
!!! ATTTTCTAATTTTATCCATA+TGG + chr2_1:64129111-64129130 Msa0217300:intron 15.0%
!!! TTTTCTAATTTTATCCATAT+GGG + chr2_1:64129112-64129131 Msa0217300:intron 15.0%
!!! ATTTTATTTTATTGGAATTG+TGG + chr2_1:64129200-64129219 Msa0217300:intron 15.0%
!! AATGTGAAAATATTGATAAA+AGG + chr2_1:64129659-64129678 Msa0217300:intron 15.0%
!! AAAATAAACTCAAAATTTGT+AGG - chr2_1:64130069-64130088 None:intergenic 15.0%
!!! TAAATCTACATAGTTTTTAT+TGG + chr2_1:64131133-64131152 Msa0217300:intron 15.0%
!!! ATTCATAATAATGTTTTGTT+TGG - chr2_1:64131902-64131921 None:intergenic 15.0%
!! TGAATTAATATAGTAAAACT+AGG - chr2_1:64132399-64132418 None:intergenic 15.0%
!! TATTATCTTCATGAAATTAG+TGG + chr2_1:64129253-64129272 Msa0217300:intron 20.0%
!!! CTTTGTGTTTTTTTTTATAG+AGG - chr2_1:64130560-64130579 None:intergenic 20.0%
!! AGTCAATTATATATAACGAA+AGG - chr2_1:64130863-64130882 None:intergenic 20.0%
!!! TATTTCACATAACAGATTTT+TGG + chr2_1:64130938-64130957 Msa0217300:intron 20.0%
!! GTTTATTGTTCTTATTCTTA+CGG + chr2_1:64131084-64131103 Msa0217300:intron 20.0%
!! CTGAAAAGAATAATCATATT+AGG - chr2_1:64131237-64131256 None:intergenic 20.0%
!! CAAAAATAAGTTTCTACATT+TGG - chr2_1:64131430-64131449 None:intergenic 20.0%
!! AGACAATATATTTAGACTTA+GGG - chr2_1:64131570-64131589 None:intergenic 20.0%
!! TAGACAATATATTTAGACTT+AGG - chr2_1:64131571-64131590 None:intergenic 20.0%
!!! ATTACACAAGACATTTTATA+AGG - chr2_1:64131599-64131618 None:intergenic 20.0%
!!! AATAATGTTTTGTTTGGTAA+GGG - chr2_1:64131896-64131915 None:intergenic 20.0%
!!! TAATAATGTTTTGTTTGGTA+AGG - chr2_1:64131897-64131916 None:intergenic 20.0%
! AAGCAAATTTGCAAAATGAA+TGG - chr2_1:64129046-64129065 None:intergenic 25.0%
! CTTGAATTAAAAAACCCATA+TGG - chr2_1:64129129-64129148 None:intergenic 25.0%
!!! ATTTTAAGAGTCTTAGTTTC+TGG + chr2_1:64129152-64129171 Msa0217300:intron 25.0%
!!! TTTTAAGAGTCTTAGTTTCT+GGG + chr2_1:64129153-64129172 Msa0217300:intron 25.0%
! TGTTCATGTTTCGAATTATA+TGG + chr2_1:64129312-64129331 Msa0217300:intron 25.0%
!!! AGACAATCACAAATTTTGAT+AGG + chr2_1:64129587-64129606 Msa0217300:intron 25.0%
!!! TATTTTTATAAGGGCTTAGT+TGG - chr2_1:64129693-64129712 None:intergenic 25.0%
!!! TTATTGCTTTGTTTTACTTC+CGG + chr2_1:64129803-64129822 Msa0217300:intron 25.0%
! AAACTCATCCAAATTGAAAA+CGG - chr2_1:64129906-64129925 None:intergenic 25.0%
!!! TAGATCTTCTCTCTAAAATT+TGG - chr2_1:64130362-64130381 None:intergenic 25.0%
!!! TACTCTAAAGTTTAGCAAAA+TGG - chr2_1:64130477-64130496 None:intergenic 25.0%
!!! TTTTGCTAAACTTTAGAGTA+AGG + chr2_1:64130477-64130496 Msa0217300:intron 25.0%
!!! CATACCCTTTTTTATTTGTA+CGG + chr2_1:64130831-64130850 Msa0217300:intron 25.0%
! TGTTCCGTACAAATAAAAAA+GGG - chr2_1:64130838-64130857 None:intergenic 25.0%
! ATGTTCCGTACAAATAAAAA+AGG - chr2_1:64130839-64130858 None:intergenic 25.0%
! TGAAATCTGATTGTTTAGTA+AGG + chr2_1:64131062-64131081 Msa0217300:intron 25.0%
! AAGAATAATCATATTAGGCA+TGG - chr2_1:64131232-64131251 None:intergenic 25.0%
! TAAAACAACATAAGAAGACA+TGG + chr2_1:64131343-64131362 Msa0217300:intron 25.0%
! TTTATAGGTCATAAGTCTAA+GGG + chr2_1:64131366-64131385 Msa0217300:intron 25.0%
! GAAGGAGAATGTTATATAAT+AGG - chr2_1:64131952-64131971 None:intergenic 25.0%
!!! ATTATGCTGTGTTATTGTTT+TGG + chr2_1:64132487-64132506 Msa0217300:three_prime_UTR 25.0%
! TTAAAAAAGACCAAAACCAA+AGG - chr2_1:64132564-64132583 None:intergenic 25.0%
!!! AATCTTCAAAGTACCATTTT+TGG + chr2_1:64132690-64132709 Msa0217300:three_prime_UTR 25.0%
! GTTGTTTACAATTCCAAAAA+TGG - chr2_1:64132706-64132725 None:intergenic 25.0%
ATTCCAAATTCCAATAGCAA+TGG - chr2_1:64129498-64129517 None:intergenic 30.0%
!! TAAATGCAAAAGTACCAGAT+AGG - chr2_1:64129752-64129771 None:intergenic 30.0%
! TATCTGGTACTTTTGCATTT+AGG + chr2_1:64129751-64129770 Msa0217300:intron 30.0%
! GTACTTTTGCATTTAGGAAT+TGG + chr2_1:64129757-64129776 Msa0217300:intron 30.0%
TGTGTCAGTAAAATATGTTC+CGG - chr2_1:64129825-64129844 None:intergenic 30.0%
TTTCGTCCATTAATTAGTTC+CGG + chr2_1:64129944-64129963 Msa0217300:intron 30.0%
AATGCATTGTTCTCAAATAG+CGG + chr2_1:64130117-64130136 Msa0217300:intron 30.0%
ATAACAGTGCTACAACAAAA+TGG + chr2_1:64130142-64130161 Msa0217300:intron 30.0%
ATCAAGAGAGAGAAAAGATA+AGG - chr2_1:64130258-64130277 None:intergenic 30.0%
TTAGAGATAGACACAAATCA+TGG + chr2_1:64130292-64130311 Msa0217300:intron 30.0%
! AGAGAGAGAGACATATTTTT+GGG + chr2_1:64130416-64130435 Msa0217300:intron 30.0%
TATATTATAACCCTGTAGCA+CGG - chr2_1:64130516-64130535 None:intergenic 30.0%
!! AATATGAGAGTATTACTCAC+TGG - chr2_1:64130765-64130784 None:intergenic 30.0%
! ACAAATAAAAAAGGGTATGG+AGG - chr2_1:64130830-64130849 None:intergenic 30.0%
CGTACAAATAAAAAAGGGTA+TGG - chr2_1:64130833-64130852 None:intergenic 30.0%
TTGACTTAATTCAACCACTA+TGG + chr2_1:64130877-64130896 Msa0217300:intron 30.0%
TGACTTAATTCAACCACTAT+GGG + chr2_1:64130878-64130897 Msa0217300:intron 30.0%
TAAACAATCAGATTTCAGTC+TGG - chr2_1:64131059-64131078 None:intergenic 30.0%
!! AGTTTTTATTGGTGATATGC+AGG + chr2_1:64131144-64131163 Msa0217300:intron 30.0%
!! GTTTTTATTGGTGATATGCA+GGG + chr2_1:64131145-64131164 Msa0217300:intron 30.0%
CATAAGAAGACATGGTTTAT+AGG + chr2_1:64131351-64131370 Msa0217300:intron 30.0%
GTTTATAGGTCATAAGTCTA+AGG + chr2_1:64131365-64131384 Msa0217300:intron 30.0%
CTTCTAAATTTGTGCCTTAA+GGG - chr2_1:64131407-64131426 None:intergenic 30.0%
! GTTCTGTATCTTTTCTTTTC+TGG + chr2_1:64131623-64131642 Msa0217300:intron 30.0%
CACAAATTGCATGTTAAAGT+TGG + chr2_1:64131700-64131719 Msa0217300:CDS 30.0%
ATAACATTCTCCTTCATTTG+AGG + chr2_1:64131957-64131976 Msa0217300:intron 30.0%
TAACATTCTCCTTCATTTGA+GGG + chr2_1:64131958-64131977 Msa0217300:intron 30.0%
!! TCTTTTCTCTAGAAACTTGT+GGG + chr2_1:64132061-64132080 Msa0217300:intron 30.0%
GTTCGCTATCTAATAAAAAC+TGG + chr2_1:64132299-64132318 Msa0217300:CDS 30.0%
CTATCTAATAAAAACTGGAG+AGG + chr2_1:64132304-64132323 Msa0217300:CDS 30.0%
!! TGATTGATAGTGTAGAGAAT+TGG + chr2_1:64132327-64132346 Msa0217300:CDS 30.0%
!!! TGGATTTGTTTTTTGTCCTT+TGG + chr2_1:64132545-64132564 Msa0217300:three_prime_UTR 30.0%
!!! TGTTTTTTGTCCTTTGGTTT+TGG + chr2_1:64132551-64132570 Msa0217300:three_prime_UTR 30.0%
! CATTGTTGTTGTTGTAACAG+TGG - chr2_1:64128888-64128907 None:intergenic 35.0%
CACTGTTACAACAACAACAA+TGG + chr2_1:64128886-64128905 Msa0217300:exon 35.0%
AACAACAACAATGGTAGCTA+TGG + chr2_1:64128895-64128914 Msa0217300:exon 35.0%
! TGACCATTGCTATTGGAATT+TGG + chr2_1:64129492-64129511 Msa0217300:intron 35.0%
TATAAGGGCTTAGTTGGAAA+TGG - chr2_1:64129687-64129706 None:intergenic 35.0%
!! TGAATCAGCCGTTTTCAATT+TGG + chr2_1:64129895-64129914 Msa0217300:intron 35.0%
AGTTCACCGGAACTAATTAA+TGG - chr2_1:64129953-64129972 None:intergenic 35.0%
TAATTAGTTCCGGTGAACTT+TGG + chr2_1:64129954-64129973 Msa0217300:intron 35.0%
TGTAGGCTGATTGATCAAAA+GGG - chr2_1:64130052-64130071 None:intergenic 35.0%
TTGTAGGCTGATTGATCAAA+AGG - chr2_1:64130053-64130072 None:intergenic 35.0%
!! AGACAGACACATATTTTGGA+AGG - chr2_1:64130175-64130194 None:intergenic 35.0%
! AGAGAGACAGACACATATTT+TGG - chr2_1:64130179-64130198 None:intergenic 35.0%
AGATAGACACAAATCATGGA+AGG + chr2_1:64130296-64130315 Msa0217300:intron 35.0%
AAGATCTAGAGAGAGAGAAA+AGG + chr2_1:64130374-64130393 Msa0217300:intron 35.0%
! GAGAGAGAGAGACATATTTT+TGG + chr2_1:64130415-64130434 Msa0217300:intron 35.0%
!! CTAAACTTTAGAGTAAGGAG+AGG + chr2_1:64130482-64130501 Msa0217300:intron 35.0%
CTATCCTAGTTTCGCTATTA+GGG + chr2_1:64130580-64130599 Msa0217300:intron 35.0%
CAACTGTGCAATAGAAGAAA+AGG + chr2_1:64130645-64130664 Msa0217300:intron 35.0%
AGCATAGCTTACATGCATAA+AGG - chr2_1:64130804-64130823 None:intergenic 35.0%
ATACGACATTGCTTATCTGT+CGG - chr2_1:64131175-64131194 None:intergenic 35.0%
AGCAATGTCGTATTGTAATG+AGG + chr2_1:64131182-64131201 Msa0217300:CDS 35.0%
GCAATGTCGTATTGTAATGA+GGG + chr2_1:64131183-64131202 Msa0217300:CDS 35.0%
GCTTCTAAATTTGTGCCTTA+AGG - chr2_1:64131408-64131427 None:intergenic 35.0%
!! CATGTTAACTTGTGCTCTTA+GGG - chr2_1:64131546-64131565 None:intergenic 35.0%
!! TCATGTTAACTTGTGCTCTT+AGG - chr2_1:64131547-64131566 None:intergenic 35.0%
ACATGCAATTTGTGTAACAC+TGG - chr2_1:64131694-64131713 None:intergenic 35.0%
GATACTGTGAAAGTCATATC+AGG + chr2_1:64131724-64131743 Msa0217300:CDS 35.0%
AGTCATATCAGGACATGAAA+AGG + chr2_1:64131735-64131754 Msa0217300:CDS 35.0%
GTCATATCAGGACATGAAAA+GGG + chr2_1:64131736-64131755 Msa0217300:CDS 35.0%
GACATGAAAAGGGTCAAATT+GGG + chr2_1:64131746-64131765 Msa0217300:CDS 35.0%
ACATGAAAAGGGTCAAATTG+GGG + chr2_1:64131747-64131766 Msa0217300:CDS 35.0%
CATGTAAAGAGTAGAGAAGA+GGG + chr2_1:64131835-64131854 Msa0217300:CDS 35.0%
! ATAACCTTGTTTATTTGCCC+TGG - chr2_1:64131865-64131884 None:intergenic 35.0%
!!! GTCAAGTTTTATTTACCTCC+CGG + chr2_1:64132016-64132035 Msa0217300:intron 35.0%
! CACAAGTTTCTAGAGAAAAG+AGG - chr2_1:64132062-64132081 None:intergenic 35.0%
!! CTCTTTTCTCTAGAAACTTG+TGG + chr2_1:64132060-64132079 Msa0217300:intron 35.0%
!! TTTTGGTGCATTTCTTGTCA+TGG + chr2_1:64132139-64132158 Msa0217300:intron 35.0%
! CAATCTGAAATTCAAGGCAA+TGG - chr2_1:64132184-64132203 None:intergenic 35.0%
TGCCTTGAATTTCAGATTGA+AGG + chr2_1:64132185-64132204 Msa0217300:intron 35.0%
! GACCTTCAATCTGAAATTCA+AGG - chr2_1:64132190-64132209 None:intergenic 35.0%
ATCACATTTGAACTGTGGAT+AGG - chr2_1:64132212-64132231 None:intergenic 35.0%
CAAGAACTTTATGACCTACA+CGG - chr2_1:64132265-64132284 None:intergenic 35.0%
GGTCATAAAGTTCTTGACAA+TGG + chr2_1:64132269-64132288 Msa0217300:CDS 35.0%
AGAGAATTGGAAGAAACTGA+AGG + chr2_1:64132340-64132359 Msa0217300:CDS 35.0%
! AACAACTGCTTCAGTTTGTT+TGG - chr2_1:64132372-64132391 None:intergenic 35.0%
! CCAATTACTCAAGTTGTGTA+TGG - chr2_1:64132528-64132547 None:intergenic 35.0%
CCATACACAACTTGAGTAAT+TGG + chr2_1:64132525-64132544 Msa0217300:three_prime_UTR 35.0%
AACTCTCAATGTAGACTTCT+CGG + chr2_1:64132635-64132654 Msa0217300:intron 35.0%
AACAATGGTAGCTATGGCTA+TGG + chr2_1:64128901-64128920 Msa0217300:exon 40.0%
CTCTCTTCCAACTCTTTCTT+CGG + chr2_1:64128956-64128975 Msa0217300:CDS 40.0%
AGTGTGAGAGAATGAAGTAC+CGG - chr2_1:64129019-64129038 None:intergenic 40.0%
! ACACCTTCAATCAGAAGCAT+TGG - chr2_1:64129354-64129373 None:intergenic 40.0%
TGTAGCATGACCATTGCTAT+TGG + chr2_1:64129485-64129504 Msa0217300:intron 40.0%
GACACATCTAGTGCATATGA+AGG + chr2_1:64129613-64129632 Msa0217300:intron 40.0%
TAGACACAAATCATGGAAGG+AGG + chr2_1:64130299-64130318 Msa0217300:intron 40.0%
AGACACAAATCATGGAAGGA+GGG + chr2_1:64130300-64130319 Msa0217300:intron 40.0%
!!! GAGAGAGACATATTTTTGGG+AGG + chr2_1:64130419-64130438 Msa0217300:intron 40.0%
!!! GAGACATATTTTTGGGAGGA+AGG + chr2_1:64130423-64130442 Msa0217300:intron 40.0%
!!! ACATATTTTTGGGAGGAAGG+AGG + chr2_1:64130426-64130445 Msa0217300:intron 40.0%
! TTTAGAGTAAGGAGAGGATC+CGG + chr2_1:64130488-64130507 Msa0217300:intron 40.0%
GCTATCCTAGTTTCGCTATT+AGG + chr2_1:64130579-64130598 Msa0217300:intron 40.0%
ATTGCCCTAATAGCGAAACT+AGG - chr2_1:64130587-64130606 None:intergenic 40.0%
TTTCGCTATTAGGGCAATAG+CGG + chr2_1:64130589-64130608 Msa0217300:intron 40.0%
AAATAGCTGAACTCCCATAG+TGG - chr2_1:64130894-64130913 None:intergenic 40.0%
!! AATGTTAGCTTGTGCCCTTA+AGG + chr2_1:64131390-64131409 Msa0217300:intron 40.0%
!! TTTTCTGGCAGCTTAAACGA+TGG + chr2_1:64131638-64131657 Msa0217300:intron 40.0%
! TTTCTGGCAGCTTAAACGAT+GGG + chr2_1:64131639-64131658 Msa0217300:intron 40.0%
GCAATTTGTGTAACACTGGA+AGG - chr2_1:64131690-64131709 None:intergenic 40.0%
GGACATGAAAAGGGTCAAAT+TGG + chr2_1:64131745-64131764 Msa0217300:CDS 40.0%
GCATGTAAAGAGTAGAGAAG+AGG + chr2_1:64131834-64131853 Msa0217300:CDS 40.0%
AGAACCAGGGCAAATAAACA+AGG + chr2_1:64131858-64131877 Msa0217300:CDS 40.0%
! ATCCTGGCTGGAACAAATTT+TGG + chr2_1:64131994-64132013 Msa0217300:intron 40.0%
ATGGTAATCCAAACTTTGGC+CGG - chr2_1:64132038-64132057 None:intergenic 40.0%
AGGCATGGTAATCCAAACTT+TGG - chr2_1:64132042-64132061 None:intergenic 40.0%
! GTTTCTAGAGAAAAGAGGCA+TGG - chr2_1:64132057-64132076 None:intergenic 40.0%
! AGAGCATCACATTTGAACTG+TGG - chr2_1:64132217-64132236 None:intergenic 40.0%
GCAGAAGCAGAAAGAAGAAG+AGG + chr2_1:64128854-64128873 Msa0217300:five_prime_UTR 45.0%
AGAAGAGGAGAGAGAGTGAT+GGG - chr2_1:64128995-64129014 None:intergenic 45.0%
AAGAAGAGGAGAGAGAGTGA+TGG - chr2_1:64128996-64129015 None:intergenic 45.0%
!! GAATGAAGTACCGGAAGAAG+AGG - chr2_1:64129010-64129029 None:intergenic 45.0%
!! CAGAAGCATTGGCGTTGTAT+AGG - chr2_1:64129343-64129362 None:intergenic 45.0%
ACGCCAATGCTTCTGATTGA+AGG + chr2_1:64129348-64129367 Msa0217300:intron 45.0%
GACACGACATTAACACGTGT+TGG - chr2_1:64129416-64129435 None:intergenic 45.0%
TTGCTTAGTGCTTGCCTATC+TGG + chr2_1:64129735-64129754 Msa0217300:intron 45.0%
AAATCATGGAAGGAGGGAGA+AGG + chr2_1:64130306-64130325 Msa0217300:intron 45.0%
!!! TATTTTTGGGAGGAAGGAGG+TGG + chr2_1:64130429-64130448 Msa0217300:intron 45.0%
TGCTCTTAGGGCACAAGTTA+AGG - chr2_1:64131534-64131553 None:intergenic 45.0%
TGTAACACTGGAAGGCTGTT+TGG - chr2_1:64131682-64131701 None:intergenic 45.0%
TGAAAAGGGTCAAATTGGGG+AGG + chr2_1:64131750-64131769 Msa0217300:CDS 45.0%
ACTCGAGTTCCCTCAAATGA+AGG - chr2_1:64131970-64131989 None:intergenic 45.0%
! GACCAAAATTTGTTCCAGCC+AGG - chr2_1:64131999-64132018 None:intergenic 45.0%
TGGTAATCCAAACTTTGGCC+GGG - chr2_1:64132037-64132056 None:intergenic 45.0%
AGAGAGTGAGAGTGAGGTCA+TGG - chr2_1:64128942-64128961 None:intergenic 50.0%
GTTGGAAGAGAGTGAGAGTG+AGG - chr2_1:64128948-64128967 None:intergenic 50.0%
AGGCTGTCCGAAGAAAGAGT+TGG - chr2_1:64128966-64128985 None:intergenic 50.0%
CACTCTCTCTCCTCTTCTTC+CGG + chr2_1:64128997-64129016 Msa0217300:CDS 50.0%
TCTGCTGCACCAAAGTTCAC+CGG - chr2_1:64129966-64129985 None:intergenic 50.0%
GAGAGAGAGAGAGAGAGAGA+GGG - chr2_1:64130211-64130230 None:intergenic 50.0%
AGAGAGAGAGAGAGAGAGAG+AGG - chr2_1:64130210-64130229 None:intergenic 50.0%
AAGGAGAGAGTGAGTGGAAG+TGG + chr2_1:64130325-64130344 Msa0217300:intron 50.0%
!! GGAAGGAGGTGGAGAGTATT+TGG + chr2_1:64130440-64130459 Msa0217300:intron 50.0%
!! GGAGGTGGAGAGTATTTGGA+AGG + chr2_1:64130444-64130463 Msa0217300:intron 50.0%
ATAACCCTGTAGCACGGATC+CGG - chr2_1:64130510-64130529 None:intergenic 50.0%
GCTTAAACGATGGGAGCGAA+AGG + chr2_1:64131648-64131667 Msa0217300:intron 50.0%
AGTAGAGAAGAGGGAGAACC+AGG + chr2_1:64131844-64131863 Msa0217300:CDS 50.0%
GTAGAGAAGAGGGAGAACCA+GGG + chr2_1:64131845-64131864 Msa0217300:CDS 50.0%
GGGAACTCGAGTTCAAATCC+TGG + chr2_1:64131978-64131997 Msa0217300:intron 50.0%
ACTCGAGTTCAAATCCTGGC+TGG + chr2_1:64131982-64132001 Msa0217300:intron 50.0%
TTTACCTCCCGGCCAAAGTT+TGG + chr2_1:64132027-64132046 Msa0217300:intron 50.0%
TAATCCAAACTTTGGCCGGG+AGG - chr2_1:64132034-64132053 None:intergenic 50.0%
! CTTCTCGGTGCATCTGACAA+AGG + chr2_1:64132650-64132669 Msa0217300:three_prime_UTR 50.0%
! GAGAGAGTGATGGGAGAGAG+AGG - chr2_1:64128986-64129005 None:intergenic 55.0%
AGAGAGAGAGAGAGAGAGGG+AGG - chr2_1:64130208-64130227 None:intergenic 55.0%
AGGGAGAAGGAGAGAGTGAG+TGG + chr2_1:64130319-64130338 Msa0217300:intron 55.0%
GAGAGAGTGAGTGGAAGTGG+AGG + chr2_1:64130328-64130347 Msa0217300:intron 55.0%
GTGAGTGGAAGTGGAGGATC+TGG + chr2_1:64130334-64130353 Msa0217300:intron 55.0%
AAGAATGTCGCGAGCCGTGT+AGG + chr2_1:64132248-64132267 Msa0217300:CDS 55.0%
AGGATCCGGATCCGTGCTAC+AGG + chr2_1:64130502-64130521 Msa0217300:intron 60.0%
GGATCCGGATCCGTGCTACA+GGG + chr2_1:64130503-64130522 Msa0217300:intron 60.0%
Chromosome Type Strat End Strand Name
chr2_1 gene 64128837 64132731 64128837 ID=Msa0217300;Name=Msa0217300
chr2_1 mRNA 64128837 64132731 64128837 ID=Msa0217300-mRNA-1;Parent=Msa0217300;Name=Msa0217300-mRNA-1;_AED=0.01;_eAED=0.01;_QI=68|1|1|1|0.75|0.6|5|311|194
chr2_1 exon 64128837 64129018 64128837 ID=Msa0217300-mRNA-1:exon:17751;Parent=Msa0217300-mRNA-1
chr2_1 exon 64131166 64131204 64131166 ID=Msa0217300-mRNA-1:exon:17752;Parent=Msa0217300-mRNA-1
chr2_1 exon 64131649 64131879 64131649 ID=Msa0217300-mRNA-1:exon:17753;Parent=Msa0217300-mRNA-1
chr2_1 exon 64132200 64132628 64132200 ID=Msa0217300-mRNA-1:exon:17754;Parent=Msa0217300-mRNA-1
chr2_1 exon 64132649 64132731 64132649 ID=Msa0217300-mRNA-1:exon:17755;Parent=Msa0217300-mRNA-1
chr2_1 five_prime_UTR 64128837 64128904 64128837 ID=Msa0217300-mRNA-1:five_prime_utr;Parent=Msa0217300-mRNA-1
chr2_1 CDS 64128905 64129018 64128905 ID=Msa0217300-mRNA-1:cds;Parent=Msa0217300-mRNA-1
chr2_1 CDS 64131166 64131204 64131166 ID=Msa0217300-mRNA-1:cds;Parent=Msa0217300-mRNA-1
chr2_1 CDS 64131649 64131879 64131649 ID=Msa0217300-mRNA-1:cds;Parent=Msa0217300-mRNA-1
chr2_1 CDS 64132200 64132400 64132200 ID=Msa0217300-mRNA-1:cds;Parent=Msa0217300-mRNA-1
chr2_1 three_prime_UTR 64132401 64132628 64132401 ID=Msa0217300-mRNA-1:three_prime_utr;Parent=Msa0217300-mRNA-1
chr2_1 three_prime_UTR 64132649 64132731 64132649 ID=Msa0217300-mRNA-1:three_prime_utr;Parent=Msa0217300-mRNA-1
Gene Sequence

>Msa0217300

ATGGTAGCTATGGCTATGGCTTCTCTTCAGAGTTCCATGACCTCACTCTCACTCTCTTCCAACTCTTTCTTCGGACAGCCTCTCTCTCCCATCACTCTCTCTCCTCTTCTTCCGGGTAAGCCGACAGATAAGCAATGTCGTATTGTAATGAGGCTTAAACGATGGGAGCGAAAGGAATGTAAACCAAACAGCCTTCCAGTGTTACACAAATTGCATGTTAAAGTTGGAGATACTGTGAAAGTCATATCAGGACATGAAAAGGGTCAAATTGGGGAGGTTACTAAGATCTTCAAGCACAACAGCACTATCATTGTCAAAGATATAAACTTGAAGACAAAGCATGTAAAGAGTAGAGAAGAGGGAGAACCAGGGCAAATAAACAAGATTGAAGGTCCTATCCACAGTTCAAATGTGATGCTCTACTCTAAAGAAAAGAATGTCGCGAGCCGTGTAGGTCATAAAGTTCTTGACAATGGTAAAAAAGTTCGCTATCTAATAAAAACTGGAGAGGTGATTGATAGTGTAGAGAATTGGAAGAAACTGAAGGAAGCTACCAAACAAACTGAAGCAGTTGTTGCTGCCTAG

Protein sequence

>Msa0217300

MVAMAMASLQSSMTSLSLSSNSFFGQPLSPITLSPLLPGKPTDKQCRIVMRLKRWERKECKPNSLPVLHKLHVKVGDTVKVISGHEKGQIGEVTKIFKHNSTIIVKDINLKTKHVKSREEGEPGQINKIEGPIHSSNVMLYSKEKNVASRVGHKVLDNGKKVRYLIKTGEVIDSVENWKKLKEATKQTEAVVAA*