AlfalfaGEDB | Msa0383380

M. sativa cultivar zhongmu-4 / Msa0383380

KEGG: -
GO: -
PFAM: -

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0383380	XP_003603567.1	85.470	117	17	0	22	138	1	117	1.39e-62	197

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0383380	G7J2U9	85.470	117	17	0	22	138	1	117	6.66e-63	197

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TFs/TRs:

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Gene ID	Type	Classification
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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0001510	Msa0383380	0.847497	1.114280e-59	-8.615850e-47
Msa0002690	Msa0383380	0.837736	4.358191e-57	-8.615850e-47
Msa0002700	Msa0383380	0.831856	1.316444e-55	-8.615850e-47
Msa0004180	Msa0383380	0.863487	2.404610e-64	-8.615850e-47
Msa0007570	Msa0383380	0.836892	7.169930e-57	-8.615850e-47
Msa0011100	Msa0383380	0.802827	4.662924e-49	-8.615850e-47
Msa0011910	Msa0383380	0.820912	5.337668e-53	-8.615850e-47
Msa0015220	Msa0383380	0.831201	1.909213e-55	-8.615850e-47
Msa0016380	Msa0383380	0.810390	1.180704e-50	-8.615850e-47
Msa0017980	Msa0383380	0.841638	4.208512e-58	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0383380	MtrunA17_Chr3g0139181	85.470	117	17	0	22	138	1	117	1.28e-66	197

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0383380	AT2G24395.1	73.134	67	18	0	69	135	61	127	2.19e-32	111

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Find 39 sgRNAs with CRISPR-Local

Find 92 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAGCACCTTAATTGAATGA+AGG	0.534547	3_1:+86278405	None:intergenic
AACCTTGCAATGGAAAAGGA+TGG	0.676800	3_1:-86278729	Msa0383380:CDS
AAGGACATCGACGGTAGATA+CGG	0.533599	3_1:+86278653	None:intergenic
ACGCATGCATGTGATTGTGA+GGG	0.709226	3_1:+86278365	None:intergenic
ACGGTAGATACGGTTGTTAG+GGG	0.651272	3_1:+86278663	None:intergenic
ATAGGAGAATCGTTGAAATC+AGG	0.450197	3_1:+86278455	None:intergenic
ATATGATGCCTACTGCTATA+AGG	0.354942	3_1:+86278811	None:intergenic
ATCATGTGTGAACCTTGCAA+TGG	0.614562	3_1:-86278739	Msa0383380:CDS
CACGATAAAGTGTGTGAAGG+TGG	0.544142	3_1:-86278779	Msa0383380:CDS
CATCACGATAAAGTGTGTGA+AGG	0.657024	3_1:-86278782	Msa0383380:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
GTATTCTACTCTACATACAT+TGG	+	chr3_1:86278895-86278914	None:intergenic	30.0%
GTATTCTACTCTACATACAT+TGG	+	chr3_1:86278895-86278914	None:intergenic	30.0%
GTCTGTAACTGGAAATTGAA+GGG	+	chr3_1:86278342-86278361	None:intergenic	35.0%
TGTCTGTAACTGGAAATTGA+AGG	+	chr3_1:86278343-86278362	None:intergenic	35.0%
GTATTGTTCCTTATAGCAGT+AGG	-	chr3_1:86278377-86278396	Msa0383380:three_prime_UTR	35.0%
ATATGATGCCTACTGCTATA+AGG	+	chr3_1:86278388-86278407	None:intergenic	35.0%
ATAGGAGAATCGTTGAAATC+AGG	+	chr3_1:86278744-86278763	None:intergenic	35.0%
TCAAGTGAGCAGTTAAATGA+AGG	+	chr3_1:86278921-86278940	None:intergenic	35.0%
GTCTGTAACTGGAAATTGAA+GGG	+	chr3_1:86278342-86278361	None:intergenic	35.0%
TGTCTGTAACTGGAAATTGA+AGG	+	chr3_1:86278343-86278362	None:intergenic	35.0%

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Chromosome	Type	Strat	End	Strand	Name
chr3_1	gene	86278235	86278983	86278235	ID=Msa0383380;Name=Msa0383380
chr3_1	mRNA	86278235	86278983	86278235	ID=Msa0383380-mRNA-1;Parent=Msa0383380;Name=Msa0383380-mRNA-1;_AED=0.01;_eAED=0.01;_QI=6\|1\|1\|1\|1\|1\|2\|213\|138
chr3_1	exon	86278235	86278528	86278235	ID=Msa0383380-mRNA-1:exon:22757;Parent=Msa0383380-mRNA-1
chr3_1	exon	86278642	86278983	86278642	ID=Msa0383380-mRNA-1:exon:22756;Parent=Msa0383380-mRNA-1
chr3_1	five_prime_UTR	86278978	86278983	86278978	ID=Msa0383380-mRNA-1:five_prime_utr;Parent=Msa0383380-mRNA-1
chr3_1	CDS	86278642	86278977	86278642	ID=Msa0383380-mRNA-1:cds;Parent=Msa0383380-mRNA-1
chr3_1	CDS	86278448	86278528	86278448	ID=Msa0383380-mRNA-1:cds;Parent=Msa0383380-mRNA-1
chr3_1	three_prime_UTR	86278235	86278447	86278235	ID=Msa0383380-mRNA-1:three_prime_utr;Parent=Msa0383380-mRNA-1

Gene Sequence

>Msa0383380

ATGAGGAAGAATCACGATAAAGTTCACTCAACCGATCCATCGTGGGAGGAGAGAAGAGGATTAATGGCTGTTGCAGTAACACCGTTTATTCTCACCCTCCCTTCAATTTCCAGTTACAGACACAGTCGTAGGCTTGGTATTGTTCCTTATAGCAGTAGGCATCATATTCGCAGCATCACGATAAAGTGTGTGAAGGTGGATACAGATACAATAAATATCATGTGTGAACCTTGCAATGGAAAAGGATGGTTGGTATGTGAGTTTTGTGAAGGCCAAAAAACTAATGTCAAAGCCCCTAACAACCGTATCTACCGTCGATGTCCTTCGTGCAAAGCCGTTGGATATGTGTTGTGTTCAAACTGCAAGGTCTTCAAATGTGTCACTTTTCCTGATTTCAACGATTCTCCTATTAATTAA

Protein sequence

>Msa0383380

MRKNHDKVHSTDPSWEERRGLMAVAVTPFILTLPSISSYRHSRRLGIVPYSSRHHIRSITIKCVKVDTDTINIMCEPCNGKGWLVCEFCEGQKTNVKAPNNRIYRRCPSCKAVGYVLCSNCKVFKCVTFPDFNDSPIN*