AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1166470


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1166470 MtrunA17_Chr7g0268601 86.813 182 19 2 1 177 1 182 2.18e-100 286
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1166470 AT4G03150.1 60.000 130 50 1 44 171 52 181 6.00e-52 164

Find 60 sgRNAs with CRISPR-Local

Find 182 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTAGGGTTACTTTACATAAA+TGG 0.225005 7_4:+58558604 Msa1166470:CDS
TTCTCATTAAACTCTTTAAC+TGG 0.232983 7_4:-58559029 None:intergenic
ATTGGAAACCATTTCTTATA+AGG 0.243835 7_4:+58558755 Msa1166470:CDS
TGGAGCTATGAAATTCAATT+TGG 0.253108 7_4:-58558855 None:intergenic
GTTCAATCCGCTGCGCGATT+AGG 0.295554 7_4:-58558821 None:intergenic
ACTTGGTCGTCATCGGGTTC+TGG 0.304693 7_4:-58558180 None:intergenic
CAAAGAATTGTAGTAGGATT+TGG 0.316745 7_4:-58558682 None:intergenic
ATTAGGAATCAGAGTGGCTT+AGG 0.341814 7_4:+58558586 Msa1166470:intron
AAAACTTTCCTTATAAGAAA+TGG 0.350129 7_4:-58558763 None:intergenic
ACGAATGGCTCATATTATAT+TGG 0.370827 7_4:+58557896 Msa1166470:five_prime_UTR
ATCTCCACATTTGTTTCCTC+AGG 0.391134 7_4:-58558645 None:intergenic
TTTCATAGCTCCACATGGTT+TGG 0.395953 7_4:+58558865 Msa1166470:three_prime_UTR
GTTGAATATGGCACGTGAAT+TGG 0.399859 7_4:+58558737 Msa1166470:CDS
GTCTTCAACTTGGTCGTCAT+CGG 0.400136 7_4:-58558187 None:intergenic
TCGTCATCGGGTTCTGGAAA+TGG 0.412464 7_4:-58558174 None:intergenic
GAGGAGGAAGATGGTGTGAA+TGG 0.458635 7_4:-58558054 None:intergenic
AAAGTGAGTTAGGAAATTCT+AGG 0.459966 7_4:-58558936 None:intergenic
TCTTCAACTTGGTCGTCATC+GGG 0.460270 7_4:-58558186 None:intergenic
CCGTATCAAAGAATTGTAGT+AGG 0.472999 7_4:-58558688 None:intergenic
CTACCTGGGAGGCATTGGTT+GGG 0.478796 7_4:-58558236 None:intergenic
AGTACCTACCTGGGAGGCAT+TGG 0.485202 7_4:-58558241 None:intergenic
AAGATGAAGAAGAAGCGTAT+TGG 0.486292 7_4:-58558101 None:intergenic
GGAGCTATGAAATTCAATTT+GGG 0.488254 7_4:-58558854 None:intergenic
GGTTACTTTACATAAATGGT+TGG 0.503773 7_4:+58558608 Msa1166470:CDS
GAAATGGATGAGAATGTGAA+TGG 0.509383 7_4:-58558158 None:intergenic
AGAAGCAATTGCACAGGGAC+AGG 0.510296 7_4:-58557924 None:intergenic
AGGAGGAAGATGGTGTGAAT+GGG 0.510323 7_4:-58558053 None:intergenic
CCTACTACAATTCTTTGATA+CGG 0.511408 7_4:+58558688 Msa1166470:CDS
TTAGGAATCAGAGTGGCTTA+GGG 0.523126 7_4:+58558587 Msa1166470:intron
ATGAAGAAGAAGCGTATTGG+TGG 0.538072 7_4:-58558098 None:intergenic
ACTCCCAACCAATGCCTCCC+AGG 0.538117 7_4:+58558233 Msa1166470:CDS
AAATAAAGAAGCAATTGCAC+AGG 0.543286 7_4:-58557930 None:intergenic
CCTACCTGGGAGGCATTGGT+TGG 0.555347 7_4:-58558237 None:intergenic
TAATAAAGTTTCTGAACGAA+TGG 0.564551 7_4:+58557881 None:intergenic
TGTGAATGGGATGATGCTGC+GGG 0.566309 7_4:-58558040 None:intergenic
GAACACGAAGGTCTTCAACT+TGG 0.573094 7_4:-58558197 None:intergenic
GAATGTTACTGTCACGGAGG+AGG 0.577024 7_4:-58558070 None:intergenic
GTGTGAATGGGATGATGCTG+CGG 0.578527 7_4:-58558041 None:intergenic
ACTGTCACGGAGGAGGAAGA+TGG 0.589440 7_4:-58558063 None:intergenic
TCTCATTAAACTCTTTAACT+GGG 0.593475 7_4:-58559028 None:intergenic
TGGTTGGGAGTAACCAATGA+GGG 0.597474 7_4:-58558221 None:intergenic
AGCCGCATTTGCAGATGTGT+AGG 0.600800 7_4:-58558793 None:intergenic
CTGTCCTGAGGAAACAAATG+TGG 0.608003 7_4:+58558641 Msa1166470:CDS
GCTATGAAATTCAATTTGGG+TGG 0.608458 7_4:-58558851 None:intergenic
TTGAATTTCATAGCTCCACA+TGG 0.618128 7_4:+58558860 Msa1166470:exon
GGCCTACACATCTGCAAATG+CGG 0.641836 7_4:+58558791 Msa1166470:CDS
GTGAATGGGTACGAGTAGTG+TGG 0.653357 7_4:-58558143 None:intergenic
AAATGGATGAGAATGTGAAT+GGG 0.656050 7_4:-58558157 None:intergenic
TTGGTTGGGAGTAACCAATG+AGG 0.663293 7_4:-58558222 None:intergenic
AATAAAGAAGCAATTGCACA+GGG 0.666063 7_4:-58557929 None:intergenic
ACAATTATTAGGAATCAGAG+TGG 0.674841 7_4:+58558580 Msa1166470:intron
CTGTAAACCTAATCGCGCAG+CGG 0.684704 7_4:+58558814 Msa1166470:CDS
GTGAGTGAATGTTACTGTCA+CGG 0.689434 7_4:-58558076 None:intergenic
GCTGCGGGGAGATAGAATGA+TGG 0.699964 7_4:-58558025 None:intergenic
GTTGGGAGTAACCAATGAGG+GGG 0.704622 7_4:-58558219 None:intergenic
GGTTGGGAGTAACCAATGAG+GGG 0.709296 7_4:-58558220 None:intergenic
GGATGATGAATACTGTCCTG+AGG 0.725475 7_4:+58558629 Msa1166470:CDS
GTGAATGGGATGATGCTGCG+GGG 0.726743 7_4:-58558039 None:intergenic
GAAAAGAGTACCTACCTGGG+AGG 0.727204 7_4:-58558247 None:intergenic
AGTGAATGTTACTGTCACGG+AGG 0.780859 7_4:-58558073 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTTCCATTCACAATTATT+AGG + chr7_4:58558569-58558588 Msa1166470:intron 20.0%
!! AAAACTTTCCTTATAAGAAA+TGG - chr7_4:58558766-58558785 None:intergenic 20.0%
!!! TTTTTCCATTCACAATTATT+AGG + chr7_4:58558569-58558588 Msa1166470:intron 20.0%
!! AAAACTTTCCTTATAAGAAA+TGG - chr7_4:58558766-58558785 None:intergenic 20.0%
! GAATTGGTTACATATTGTTA+AGG + chr7_4:58558331-58558350 Msa1166470:intron 25.0%
! TGATTCCTAATAATTGTGAA+TGG - chr7_4:58558577-58558596 None:intergenic 25.0%
!! TTAGGGTTACTTTACATAAA+TGG + chr7_4:58558604-58558623 Msa1166470:CDS 25.0%
! ATTGGAAACCATTTCTTATA+AGG + chr7_4:58558755-58558774 Msa1166470:CDS 25.0%
!! TCTTATAAGGAAAGTTTTCA+TGG + chr7_4:58558768-58558787 Msa1166470:CDS 25.0%
!! CTTATAAGGAAAGTTTTCAT+GGG + chr7_4:58558769-58558788 Msa1166470:CDS 25.0%
!! TTATAAGGAAAGTTTTCATG+GGG + chr7_4:58558770-58558789 Msa1166470:CDS 25.0%
! TCTCATTAAACTCTTTAACT+GGG - chr7_4:58559031-58559050 None:intergenic 25.0%
! TTCTCATTAAACTCTTTAAC+TGG - chr7_4:58559032-58559051 None:intergenic 25.0%
!!! CTATTTTTAATTTCTGTACC+CGG + chr7_4:58559090-58559109 Msa1166470:three_prime_UTR 25.0%
! GAATTGGTTACATATTGTTA+AGG + chr7_4:58558331-58558350 Msa1166470:intron 25.0%
! TGATTCCTAATAATTGTGAA+TGG - chr7_4:58558577-58558596 None:intergenic 25.0%
!! TTAGGGTTACTTTACATAAA+TGG + chr7_4:58558604-58558623 Msa1166470:CDS 25.0%
! ATTGGAAACCATTTCTTATA+AGG + chr7_4:58558755-58558774 Msa1166470:CDS 25.0%
!! TCTTATAAGGAAAGTTTTCA+TGG + chr7_4:58558768-58558787 Msa1166470:CDS 25.0%
!! CTTATAAGGAAAGTTTTCAT+GGG + chr7_4:58558769-58558788 Msa1166470:CDS 25.0%
!! TTATAAGGAAAGTTTTCATG+GGG + chr7_4:58558770-58558789 Msa1166470:CDS 25.0%
! TCTCATTAAACTCTTTAACT+GGG - chr7_4:58559031-58559050 None:intergenic 25.0%
! TTCTCATTAAACTCTTTAAC+TGG - chr7_4:58559032-58559051 None:intergenic 25.0%
ACGAATGGCTCATATTATAT+TGG + chr7_4:58557896-58557915 Msa1166470:five_prime_UTR 30.0%
AATAAAGAAGCAATTGCACA+GGG - chr7_4:58557932-58557951 None:intergenic 30.0%
AAATAAAGAAGCAATTGCAC+AGG - chr7_4:58557933-58557952 None:intergenic 30.0%
AAATGGATGAGAATGTGAAT+GGG - chr7_4:58558160-58558179 None:intergenic 30.0%
!! ACGTGTTTCTAAAATTTGAG+AGG - chr7_4:58558280-58558299 None:intergenic 30.0%
TGAGATGTTCATGTTAGAAT+TGG + chr7_4:58558315-58558334 Msa1166470:intron 30.0%
ACAATTATTAGGAATCAGAG+TGG + chr7_4:58558580-58558599 Msa1166470:intron 30.0%
! GGTTACTTTACATAAATGGT+TGG + chr7_4:58558608-58558627 Msa1166470:CDS 30.0%
CAAAGAATTGTAGTAGGATT+TGG - chr7_4:58558685-58558704 None:intergenic 30.0%
CCTACTACAATTCTTTGATA+CGG + chr7_4:58558688-58558707 Msa1166470:CDS 30.0%
! AGCTGACATTTTGTTGAATA+TGG + chr7_4:58558725-58558744 Msa1166470:CDS 30.0%
GGAGCTATGAAATTCAATTT+GGG - chr7_4:58558857-58558876 None:intergenic 30.0%
TGGAGCTATGAAATTCAATT+TGG - chr7_4:58558858-58558877 None:intergenic 30.0%
AAAGTGAGTTAGGAAATTCT+AGG - chr7_4:58558939-58558958 None:intergenic 30.0%
!! GAATTTCCTAACTCACTTTT+TGG + chr7_4:58558940-58558959 Msa1166470:three_prime_UTR 30.0%
ACGAATGGCTCATATTATAT+TGG + chr7_4:58557896-58557915 Msa1166470:five_prime_UTR 30.0%
AATAAAGAAGCAATTGCACA+GGG - chr7_4:58557932-58557951 None:intergenic 30.0%
AAATAAAGAAGCAATTGCAC+AGG - chr7_4:58557933-58557952 None:intergenic 30.0%
AAATGGATGAGAATGTGAAT+GGG - chr7_4:58558160-58558179 None:intergenic 30.0%
!! ACGTGTTTCTAAAATTTGAG+AGG - chr7_4:58558280-58558299 None:intergenic 30.0%
TGAGATGTTCATGTTAGAAT+TGG + chr7_4:58558315-58558334 Msa1166470:intron 30.0%
ACAATTATTAGGAATCAGAG+TGG + chr7_4:58558580-58558599 Msa1166470:intron 30.0%
! GGTTACTTTACATAAATGGT+TGG + chr7_4:58558608-58558627 Msa1166470:CDS 30.0%
CAAAGAATTGTAGTAGGATT+TGG - chr7_4:58558685-58558704 None:intergenic 30.0%
CCTACTACAATTCTTTGATA+CGG + chr7_4:58558688-58558707 Msa1166470:CDS 30.0%
! AGCTGACATTTTGTTGAATA+TGG + chr7_4:58558725-58558744 Msa1166470:CDS 30.0%
GGAGCTATGAAATTCAATTT+GGG - chr7_4:58558857-58558876 None:intergenic 30.0%
TGGAGCTATGAAATTCAATT+TGG - chr7_4:58558858-58558877 None:intergenic 30.0%
AAAGTGAGTTAGGAAATTCT+AGG - chr7_4:58558939-58558958 None:intergenic 30.0%
!! GAATTTCCTAACTCACTTTT+TGG + chr7_4:58558940-58558959 Msa1166470:three_prime_UTR 30.0%
!! TATTTTTCTAGTCGAGCAAG+CGG + chr7_4:58557948-58557967 Msa1166470:five_prime_UTR 35.0%
! AAGATGAAGAAGAAGCGTAT+TGG - chr7_4:58558104-58558123 None:intergenic 35.0%
GAAATGGATGAGAATGTGAA+TGG - chr7_4:58558161-58558180 None:intergenic 35.0%
!! AATGAAAAGAGTACCTACCT+GGG - chr7_4:58558253-58558272 None:intergenic 35.0%
ATGAAGATATAAATGAGCGC+AGG - chr7_4:58558539-58558558 None:intergenic 35.0%
CCGTATCAAAGAATTGTAGT+AGG - chr7_4:58558691-58558710 None:intergenic 35.0%
GCTATGAAATTCAATTTGGG+TGG - chr7_4:58558854-58558873 None:intergenic 35.0%
TTGAATTTCATAGCTCCACA+TGG + chr7_4:58558860-58558879 Msa1166470:exon 35.0%
AGTGAAAAAACCAAACCATG+TGG - chr7_4:58558878-58558897 None:intergenic 35.0%
!! TATTTTTCTAGTCGAGCAAG+CGG + chr7_4:58557948-58557967 Msa1166470:five_prime_UTR 35.0%
! AAGATGAAGAAGAAGCGTAT+TGG - chr7_4:58558104-58558123 None:intergenic 35.0%
GAAATGGATGAGAATGTGAA+TGG - chr7_4:58558161-58558180 None:intergenic 35.0%
!! AATGAAAAGAGTACCTACCT+GGG - chr7_4:58558253-58558272 None:intergenic 35.0%
ATGAAGATATAAATGAGCGC+AGG - chr7_4:58558539-58558558 None:intergenic 35.0%
CCGTATCAAAGAATTGTAGT+AGG - chr7_4:58558691-58558710 None:intergenic 35.0%
GCTATGAAATTCAATTTGGG+TGG - chr7_4:58558854-58558873 None:intergenic 35.0%
TTGAATTTCATAGCTCCACA+TGG + chr7_4:58558860-58558879 Msa1166470:exon 35.0%
AGTGAAAAAACCAAACCATG+TGG - chr7_4:58558878-58558897 None:intergenic 35.0%
GTGAGTGAATGTTACTGTCA+CGG - chr7_4:58558079-58558098 None:intergenic 40.0%
! ATGAAGAAGAAGCGTATTGG+TGG - chr7_4:58558101-58558120 None:intergenic 40.0%
!!! GTGGACAATTTTTGGTGAAG+AGG - chr7_4:58558127-58558146 None:intergenic 40.0%
! CGAGTAGTGTGGACAATTTT+TGG - chr7_4:58558135-58558154 None:intergenic 40.0%
!! GAATGAAAAGAGTACCTACC+TGG - chr7_4:58558254-58558273 None:intergenic 40.0%
AAAGTAATCACATGTGTCCG+TGG + chr7_4:58558460-58558479 Msa1166470:intron 40.0%
CTAGTGATTTCAACACCGAA+AGG - chr7_4:58558486-58558505 None:intergenic 40.0%
!! CTTTCGGTGTTGAAATCACT+AGG + chr7_4:58558484-58558503 Msa1166470:intron 40.0%
GTTGAAATCACTAGGTGGTT+AGG + chr7_4:58558492-58558511 Msa1166470:intron 40.0%
ATTAGGAATCAGAGTGGCTT+AGG + chr7_4:58558586-58558605 Msa1166470:intron 40.0%
TTAGGAATCAGAGTGGCTTA+GGG + chr7_4:58558587-58558606 Msa1166470:intron 40.0%
ATCTCCACATTTGTTTCCTC+AGG - chr7_4:58558648-58558667 None:intergenic 40.0%
GTTGAATATGGCACGTGAAT+TGG + chr7_4:58558737-58558756 Msa1166470:CDS 40.0%
TTTCATAGCTCCACATGGTT+TGG + chr7_4:58558865-58558884 Msa1166470:three_prime_UTR 40.0%
GAGTCACCAAAAAGTGAGTT+AGG - chr7_4:58558949-58558968 None:intergenic 40.0%
GTGAGTGAATGTTACTGTCA+CGG - chr7_4:58558079-58558098 None:intergenic 40.0%
! ATGAAGAAGAAGCGTATTGG+TGG - chr7_4:58558101-58558120 None:intergenic 40.0%
!!! GTGGACAATTTTTGGTGAAG+AGG - chr7_4:58558127-58558146 None:intergenic 40.0%
! CGAGTAGTGTGGACAATTTT+TGG - chr7_4:58558135-58558154 None:intergenic 40.0%
!! GAATGAAAAGAGTACCTACC+TGG - chr7_4:58558254-58558273 None:intergenic 40.0%
AAAGTAATCACATGTGTCCG+TGG + chr7_4:58558460-58558479 Msa1166470:intron 40.0%
CTAGTGATTTCAACACCGAA+AGG - chr7_4:58558486-58558505 None:intergenic 40.0%
!! CTTTCGGTGTTGAAATCACT+AGG + chr7_4:58558484-58558503 Msa1166470:intron 40.0%
GTTGAAATCACTAGGTGGTT+AGG + chr7_4:58558492-58558511 Msa1166470:intron 40.0%
ATTAGGAATCAGAGTGGCTT+AGG + chr7_4:58558586-58558605 Msa1166470:intron 40.0%
TTAGGAATCAGAGTGGCTTA+GGG + chr7_4:58558587-58558606 Msa1166470:intron 40.0%
ATCTCCACATTTGTTTCCTC+AGG - chr7_4:58558648-58558667 None:intergenic 40.0%
GTTGAATATGGCACGTGAAT+TGG + chr7_4:58558737-58558756 Msa1166470:CDS 40.0%
TTTCATAGCTCCACATGGTT+TGG + chr7_4:58558865-58558884 Msa1166470:three_prime_UTR 40.0%
GAGTCACCAAAAAGTGAGTT+AGG - chr7_4:58558949-58558968 None:intergenic 40.0%
AGGAGGAAGATGGTGTGAAT+GGG - chr7_4:58558056-58558075 None:intergenic 45.0%
AGTGAATGTTACTGTCACGG+AGG - chr7_4:58558076-58558095 None:intergenic 45.0%
TCTTCAACTTGGTCGTCATC+GGG - chr7_4:58558189-58558208 None:intergenic 45.0%
GTCTTCAACTTGGTCGTCAT+CGG - chr7_4:58558190-58558209 None:intergenic 45.0%
GAACACGAAGGTCTTCAACT+TGG - chr7_4:58558200-58558219 None:intergenic 45.0%
TGGTTGGGAGTAACCAATGA+GGG - chr7_4:58558224-58558243 None:intergenic 45.0%
TTGGTTGGGAGTAACCAATG+AGG - chr7_4:58558225-58558244 None:intergenic 45.0%
! TAGTTAGCTTAGACCGACGA+AGG + chr7_4:58558396-58558415 Msa1166470:intron 45.0%
ATTTCAACACCGAAAGGCCA+CGG - chr7_4:58558480-58558499 None:intergenic 45.0%
!! TCGGTGTTGAAATCACTAGG+TGG + chr7_4:58558487-58558506 Msa1166470:intron 45.0%
GGATGATGAATACTGTCCTG+AGG + chr7_4:58558629-58558648 Msa1166470:CDS 45.0%
CTGTCCTGAGGAAACAAATG+TGG + chr7_4:58558641-58558660 Msa1166470:CDS 45.0%
TGAGCCATTCGTTCAGAAAC+CGG - chr7_4:58557888-58557907 None:intergenic 45.0%
AGGAGGAAGATGGTGTGAAT+GGG - chr7_4:58558056-58558075 None:intergenic 45.0%
AGTGAATGTTACTGTCACGG+AGG - chr7_4:58558076-58558095 None:intergenic 45.0%
TCTTCAACTTGGTCGTCATC+GGG - chr7_4:58558189-58558208 None:intergenic 45.0%
GTCTTCAACTTGGTCGTCAT+CGG - chr7_4:58558190-58558209 None:intergenic 45.0%
GAACACGAAGGTCTTCAACT+TGG - chr7_4:58558200-58558219 None:intergenic 45.0%
TGGTTGGGAGTAACCAATGA+GGG - chr7_4:58558224-58558243 None:intergenic 45.0%
TTGGTTGGGAGTAACCAATG+AGG - chr7_4:58558225-58558244 None:intergenic 45.0%
! TAGTTAGCTTAGACCGACGA+AGG + chr7_4:58558396-58558415 Msa1166470:intron 45.0%
ATTTCAACACCGAAAGGCCA+CGG - chr7_4:58558480-58558499 None:intergenic 45.0%
!! TCGGTGTTGAAATCACTAGG+TGG + chr7_4:58558487-58558506 Msa1166470:intron 45.0%
GGATGATGAATACTGTCCTG+AGG + chr7_4:58558629-58558648 Msa1166470:CDS 45.0%
CTGTCCTGAGGAAACAAATG+TGG + chr7_4:58558641-58558660 Msa1166470:CDS 45.0%
AGAAGCAATTGCACAGGGAC+AGG - chr7_4:58557927-58557946 None:intergenic 50.0%
TGTGAATGGGATGATGCTGC+GGG - chr7_4:58558043-58558062 None:intergenic 50.0%
GTGTGAATGGGATGATGCTG+CGG - chr7_4:58558044-58558063 None:intergenic 50.0%
GAGGAGGAAGATGGTGTGAA+TGG - chr7_4:58558057-58558076 None:intergenic 50.0%
GAATGTTACTGTCACGGAGG+AGG - chr7_4:58558073-58558092 None:intergenic 50.0%
GTGAATGGGTACGAGTAGTG+TGG - chr7_4:58558146-58558165 None:intergenic 50.0%
!! TCGTCATCGGGTTCTGGAAA+TGG - chr7_4:58558177-58558196 None:intergenic 50.0%
GTTGGGAGTAACCAATGAGG+GGG - chr7_4:58558222-58558241 None:intergenic 50.0%
GGTTGGGAGTAACCAATGAG+GGG - chr7_4:58558223-58558242 None:intergenic 50.0%
!! GAAAAGAGTACCTACCTGGG+AGG - chr7_4:58558250-58558269 None:intergenic 50.0%
GGCCTACACATCTGCAAATG+CGG + chr7_4:58558791-58558810 Msa1166470:CDS 50.0%
AGCCGCATTTGCAGATGTGT+AGG - chr7_4:58558796-58558815 None:intergenic 50.0%
CTGTAAACCTAATCGCGCAG+CGG + chr7_4:58558814-58558833 Msa1166470:CDS 50.0%
AGAAGCAATTGCACAGGGAC+AGG - chr7_4:58557927-58557946 None:intergenic 50.0%
TGTGAATGGGATGATGCTGC+GGG - chr7_4:58558043-58558062 None:intergenic 50.0%
GTGTGAATGGGATGATGCTG+CGG - chr7_4:58558044-58558063 None:intergenic 50.0%
GAGGAGGAAGATGGTGTGAA+TGG - chr7_4:58558057-58558076 None:intergenic 50.0%
GAATGTTACTGTCACGGAGG+AGG - chr7_4:58558073-58558092 None:intergenic 50.0%
GTGAATGGGTACGAGTAGTG+TGG - chr7_4:58558146-58558165 None:intergenic 50.0%
!! TCGTCATCGGGTTCTGGAAA+TGG - chr7_4:58558177-58558196 None:intergenic 50.0%
GTTGGGAGTAACCAATGAGG+GGG - chr7_4:58558222-58558241 None:intergenic 50.0%
GGTTGGGAGTAACCAATGAG+GGG - chr7_4:58558223-58558242 None:intergenic 50.0%
!! GAAAAGAGTACCTACCTGGG+AGG - chr7_4:58558250-58558269 None:intergenic 50.0%
GGCCTACACATCTGCAAATG+CGG + chr7_4:58558791-58558810 Msa1166470:CDS 50.0%
AGCCGCATTTGCAGATGTGT+AGG - chr7_4:58558796-58558815 None:intergenic 50.0%
CTGTAAACCTAATCGCGCAG+CGG + chr7_4:58558814-58558833 Msa1166470:CDS 50.0%
GCTGCGGGGAGATAGAATGA+TGG - chr7_4:58558028-58558047 None:intergenic 55.0%
GTGAATGGGATGATGCTGCG+GGG - chr7_4:58558042-58558061 None:intergenic 55.0%
ACTGTCACGGAGGAGGAAGA+TGG - chr7_4:58558066-58558085 None:intergenic 55.0%
ACTTGGTCGTCATCGGGTTC+TGG - chr7_4:58558183-58558202 None:intergenic 55.0%
ACCTTCGTGTTCCCCCTCAT+TGG + chr7_4:58558208-58558227 Msa1166470:CDS 55.0%
ACCAATGAGGGGGAACACGA+AGG - chr7_4:58558212-58558231 None:intergenic 55.0%
!! CTACCTGGGAGGCATTGGTT+GGG - chr7_4:58558239-58558258 None:intergenic 55.0%
! AGTACCTACCTGGGAGGCAT+TGG - chr7_4:58558244-58558263 None:intergenic 55.0%
! CGTGTTGACGTGTCCTTCGT+CGG - chr7_4:58558412-58558431 None:intergenic 55.0%
CGACGAAGGACACGTCAACA+CGG + chr7_4:58558410-58558429 Msa1166470:intron 55.0%
CACATGTGTCCGTGGCCTTT+CGG + chr7_4:58558468-58558487 Msa1166470:intron 55.0%
GTTCAATCCGCTGCGCGATT+AGG - chr7_4:58558824-58558843 None:intergenic 55.0%
GCTGCGGGGAGATAGAATGA+TGG - chr7_4:58558028-58558047 None:intergenic 55.0%
GTGAATGGGATGATGCTGCG+GGG - chr7_4:58558042-58558061 None:intergenic 55.0%
ACTGTCACGGAGGAGGAAGA+TGG - chr7_4:58558066-58558085 None:intergenic 55.0%
ACTTGGTCGTCATCGGGTTC+TGG - chr7_4:58558183-58558202 None:intergenic 55.0%
ACCTTCGTGTTCCCCCTCAT+TGG + chr7_4:58558208-58558227 Msa1166470:CDS 55.0%
ACCAATGAGGGGGAACACGA+AGG - chr7_4:58558212-58558231 None:intergenic 55.0%
!! CTACCTGGGAGGCATTGGTT+GGG - chr7_4:58558239-58558258 None:intergenic 55.0%
! AGTACCTACCTGGGAGGCAT+TGG - chr7_4:58558244-58558263 None:intergenic 55.0%
! CGTGTTGACGTGTCCTTCGT+CGG - chr7_4:58558412-58558431 None:intergenic 55.0%
CGACGAAGGACACGTCAACA+CGG + chr7_4:58558410-58558429 Msa1166470:intron 55.0%
CACATGTGTCCGTGGCCTTT+CGG + chr7_4:58558468-58558487 Msa1166470:intron 55.0%
GTTCAATCCGCTGCGCGATT+AGG - chr7_4:58558824-58558843 None:intergenic 55.0%
ACTCCCAACCAATGCCTCCC+AGG + chr7_4:58558233-58558252 Msa1166470:CDS 60.0%
!! CCTACCTGGGAGGCATTGGT+TGG - chr7_4:58558240-58558259 None:intergenic 60.0%
CCAACCAATGCCTCCCAGGT+AGG + chr7_4:58558237-58558256 Msa1166470:intron 60.0%
ACTCCCAACCAATGCCTCCC+AGG + chr7_4:58558233-58558252 Msa1166470:CDS 60.0%
!! CCTACCTGGGAGGCATTGGT+TGG - chr7_4:58558240-58558259 None:intergenic 60.0%
CCAACCAATGCCTCCCAGGT+AGG + chr7_4:58558237-58558256 Msa1166470:intron 60.0%
Chromosome Type Strat End Strand Name
chr7_4 gene 58557888 58559111 58557888 ID=Msa1166470;Name=Msa1166470
chr7_4 mRNA 58557888 58559111 58557888 ID=Msa1166470-mRNA-1;Parent=Msa1166470;Name=Msa1166470-mRNA-1;_AED=0.00;_eAED=0.00;_QI=106|1|1|1|1|1|2|248|177
chr7_4 exon 58557888 58558254 58557888 ID=Msa1166470-mRNA-1:exon:17935;Parent=Msa1166470-mRNA-1
chr7_4 exon 58558591 58559111 58558591 ID=Msa1166470-mRNA-1:exon:17936;Parent=Msa1166470-mRNA-1
chr7_4 five_prime_UTR 58557888 58557993 58557888 ID=Msa1166470-mRNA-1:five_prime_utr;Parent=Msa1166470-mRNA-1
chr7_4 CDS 58557994 58558254 58557994 ID=Msa1166470-mRNA-1:cds;Parent=Msa1166470-mRNA-1
chr7_4 CDS 58558591 58558863 58558591 ID=Msa1166470-mRNA-1:cds;Parent=Msa1166470-mRNA-1
chr7_4 three_prime_UTR 58558864 58559111 58558864 ID=Msa1166470-mRNA-1:three_prime_utr;Parent=Msa1166470-mRNA-1
Gene Sequence

>Msa1166470

ATGTCAAGCTTGAAATTGAATCTAGTTCATACCATCATTCTATCTCCCCGCAGCATCATCCCATTCACACCATCTTCCTCCTCCGTGACAGTAACATTCACTCACCACCAATACGCTTCTTCTTCATCTTCCTCTTCACCAAAAATTGTCCACACTACTCGTACCCATTCACATTCTCATCCATTTCCAGAACCCGATGACGACCAAGTTGAAGACCTTCGTGTTCCCCCTCATTGGTTACTCCCAACCAATGCCTCCCAGGAATCAGAGTGGCTTAGGGTTACTTTACATAAATGGTTGGATGATGAATACTGTCCTGAGGAAACAAATGTGGAGATAAGCAGAGTTGCTGCCAAATCCTACTACAATTCTTTGATACGGAAACAAGCTGATTTAGCTGACATTTTGTTGAATATGGCACGTGAATTGGAAACCATTTCTTATAAGGAAAGTTTTCATGGGGCCTACACATCTGCAAATGCGGCTGTAAACCTAATCGCGCAGCGGATTGAACAATTCTGCCACCCAAATTGA

Protein sequence

>Msa1166470

MSSLKLNLVHTIILSPRSIIPFTPSSSSVTVTFTHHQYASSSSSSSPKIVHTTRTHSHSHPFPEPDDDQVEDLRVPPHWLLPTNASQESEWLRVTLHKWLDDEYCPEETNVEISRVAAKSYYNSLIRKQADLADILLNMARELETISYKESFHGAYTSANAAVNLIAQRIEQFCHPN*