Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0773200 | XP_003615184.1 | 96.284 | 296 | 8 | 1 | 1 | 296 | 1 | 293 | 0.0 | 576 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0773200 | sp|Q9JKX4|AATF_MOUSE | 29.817 | 218 | 129 | 6 | 99 | 298 | 186 | 397 | 8.38e-16 | 80.9 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0773200 | G7KAI8 | 96.284 | 296 | 8 | 1 | 1 | 296 | 1 | 293 | 0.0 | 576 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0003630 | Msa0773200 | 0.800656 | 1.301256e-48 | -8.615850e-47 |
| Msa0010770 | Msa0773200 | 0.814818 | 1.269585e-51 | -8.615850e-47 |
| Msa0058310 | Msa0773200 | 0.801107 | 1.052318e-48 | -8.615850e-47 |
| Msa0068430 | Msa0773200 | 0.809155 | 2.176118e-50 | -8.615850e-47 |
| Msa0076780 | Msa0773200 | 0.809201 | 2.127043e-50 | -8.615850e-47 |
| Msa0090030 | Msa0773200 | 0.804238 | 2.377970e-49 | -8.615850e-47 |
| Msa0097950 | Msa0773200 | 0.828173 | 1.041327e-54 | -8.615850e-47 |
| Msa0108870 | Msa0773200 | 0.829015 | 6.520789e-55 | -8.615850e-47 |
| Msa0605000 | Msa0773200 | 0.807734 | 4.373438e-50 | -8.615850e-47 |
| Msa0618950 | Msa0773200 | 0.804384 | 2.217049e-49 | -8.615850e-47 |
| Msa0626940 | Msa0773200 | 0.803248 | 3.817059e-49 | -8.615850e-47 |
| Msa0641140 | Msa0773200 | 0.807680 | 4.490241e-50 | -8.615850e-47 |
| Msa0656580 | Msa0773200 | 0.807639 | 4.582582e-50 | -8.615850e-47 |
| Msa0659990 | Msa0773200 | 0.813346 | 2.680906e-51 | -8.615850e-47 |
| Msa0675990 | Msa0773200 | 0.819654 | 1.036901e-52 | -8.615850e-47 |
| Msa0705390 | Msa0773200 | 0.809349 | 1.977420e-50 | -8.615850e-47 |
| Msa0734960 | Msa0773200 | 0.801468 | 8.875614e-49 | -8.615850e-47 |
| Msa0744100 | Msa0773200 | 0.804670 | 1.932637e-49 | -8.615850e-47 |
| Msa0773200 | Msa0788120 | 0.810118 | 1.350964e-50 | -8.615850e-47 |
| Msa0773200 | Msa0825270 | 0.807694 | 4.460524e-50 | -8.615850e-47 |
| Msa0773200 | Msa0850710 | 0.854103 | 1.538466e-61 | -8.615850e-47 |
| Msa0773200 | Msa0859180 | 0.820995 | 5.107797e-53 | -8.615850e-47 |
| Msa0773200 | Msa0861830 | 0.804878 | 1.748834e-49 | -8.615850e-47 |
| Msa0773200 | Msa0880040 | 0.814751 | 1.313574e-51 | -8.615850e-47 |
| Msa0773200 | Msa0901450 | 0.802721 | 4.904993e-49 | -8.615850e-47 |
| Msa0773200 | Msa0945240 | 0.801776 | 7.674683e-49 | -8.615850e-47 |
| Msa0773200 | Msa0980940 | 0.802414 | 5.674421e-49 | -8.615850e-47 |
| Msa0773200 | Msa0981430 | 0.808091 | 3.672883e-50 | -8.615850e-47 |
| Msa0773200 | Msa1001350 | 0.815998 | 6.936149e-52 | -8.615850e-47 |
| Msa0773200 | Msa1036740 | 0.802702 | 4.948228e-49 | -8.615850e-47 |
| Msa0773200 | Msa1070390 | 0.801409 | 9.128472e-49 | -8.615850e-47 |
| Msa0773200 | Msa1098890 | 0.800829 | 1.199344e-48 | -8.615850e-47 |
| Msa0773200 | Msa1133400 | 0.818974 | 1.481291e-52 | -8.615850e-47 |
| Msa0773200 | Msa1158230 | 0.803116 | 4.065327e-49 | -8.615850e-47 |
| Msa0773200 | Msa1178050 | 0.800985 | 1.114445e-48 | -8.615850e-47 |
| Msa0773200 | Msa1280620 | 0.839414 | 1.607221e-57 | -8.615850e-47 |
| Msa0773200 | Msa1294960 | 0.803084 | 4.127492e-49 | -8.615850e-47 |
| Msa0773200 | Msa1296300 | 0.806913 | 6.529794e-50 | -8.615850e-47 |
| Msa0773200 | Msa1299330 | 0.816319 | 5.879965e-52 | -8.615850e-47 |
| Msa0773200 | Msa1299700 | 0.807849 | 4.134865e-50 | -8.615850e-47 |
| Msa0773200 | Msa1317270 | 0.810404 | 1.172197e-50 | -8.615850e-47 |
| Msa0773200 | Msa1320820 | 0.816688 | 4.861117e-52 | -8.615850e-47 |
| Msa0773200 | Msa1332220 | 0.800863 | 1.180363e-48 | -8.615850e-47 |
| Msa0773200 | Msa1340810 | 0.812411 | 4.298235e-51 | -8.615850e-47 |
| Msa0773200 | Msa1340830 | 0.806978 | 6.324705e-50 | -8.615850e-47 |
| Msa0773200 | Msa1359560 | 0.802969 | 4.358177e-49 | -8.615850e-47 |
| Msa0773200 | Msa1363700 | 0.801269 | 9.750449e-49 | -8.615850e-47 |
| Msa0773200 | Msa1371240 | 0.813423 | 2.578690e-51 | -8.615850e-47 |
| Msa0773200 | Msa1383740 | 0.813917 | 2.007809e-51 | -8.615850e-47 |
| Msa0773200 | Msa1433600 | 0.802505 | 5.435426e-49 | -8.615850e-47 |
| Msa0773200 | Msa1452480 | 0.825154 | 5.470728e-54 | -8.615850e-47 |
| Msa0773200 | Msa1458810 | 0.803820 | 2.905097e-49 | -8.615850e-47 |
| Msa0773200 | Msa1464290 | 0.803709 | 3.063187e-49 | -8.615850e-47 |
| Msa0127040 | Msa0773200 | 0.814746 | 1.316954e-51 | -8.615850e-47 |
| Msa0136380 | Msa0773200 | 0.804138 | 2.494115e-49 | -8.615850e-47 |
| Msa0138210 | Msa0773200 | 0.813862 | 2.065080e-51 | -8.615850e-47 |
| Msa0138640 | Msa0773200 | 0.805530 | 1.276906e-49 | -8.615850e-47 |
| Msa0156230 | Msa0773200 | 0.800788 | 1.222832e-48 | -8.615850e-47 |
| Msa0160670 | Msa0773200 | 0.801168 | 1.022835e-48 | -8.615850e-47 |
| Msa0179000 | Msa0773200 | 0.802953 | 4.392268e-49 | -8.615850e-47 |
| Msa0198520 | Msa0773200 | 0.813729 | 2.208261e-51 | -8.615850e-47 |
| Msa0198530 | Msa0773200 | 0.805593 | 1.238501e-49 | -8.615850e-47 |
| Msa0227230 | Msa0773200 | 0.804981 | 1.664025e-49 | -8.615850e-47 |
| Msa0381000 | Msa0773200 | 0.838610 | 2.596866e-57 | -8.615850e-47 |
| Msa0381080 | Msa0773200 | 0.828646 | 8.009453e-55 | -8.615850e-47 |
| Msa0461590 | Msa0773200 | 0.803580 | 3.257730e-49 | -8.615850e-47 |
| Msa0474700 | Msa0773200 | 0.806281 | 8.878644e-50 | -8.615850e-47 |
| Msa0480780 | Msa0773200 | 0.802867 | 4.574929e-49 | -8.615850e-47 |
| Msa0239940 | Msa0773200 | 0.806473 | 8.085829e-50 | -8.615850e-47 |
| Msa0318720 | Msa0773200 | 0.815885 | 7.351638e-52 | -8.615850e-47 |
| Msa0322590 | Msa0773200 | 0.814743 | 1.318648e-51 | -8.615850e-47 |
| Msa0324240 | Msa0773200 | 0.806332 | 8.658955e-50 | -8.615850e-47 |
| Msa0506940 | Msa0773200 | 0.808057 | 3.733990e-50 | -8.615850e-47 |
| Msa0523050 | Msa0773200 | 0.816027 | 6.834030e-52 | -8.615850e-47 |
| Msa0550570 | Msa0773200 | 0.800422 | 1.452279e-48 | -8.615850e-47 |
| Msa0578090 | Msa0773200 | 0.808064 | 3.720437e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0773200 | MtrunA17_Chr5g0426741 | 96.284 | 296 | 8 | 1 | 1 | 296 | 1 | 293 | 0.0 | 576 |
| Msa0773200 | MtrunA17_Chr7g0215801 | 93.991 | 233 | 14 | 0 | 63 | 295 | 60 | 292 | 2.50e-162 | 457 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0773200 | AT5G61330.3 | 57.692 | 260 | 96 | 3 | 29 | 288 | 80 | 325 | 4.16e-87 | 268 |
| Msa0773200 | AT5G61330.1 | 57.692 | 260 | 96 | 3 | 29 | 288 | 80 | 325 | 4.16e-87 | 268 |
| Msa0773200 | AT5G61330.2 | 57.692 | 260 | 96 | 3 | 29 | 288 | 91 | 336 | 8.65e-87 | 267 |
Find 66 sgRNAs with CRISPR-Local
Find 328 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTTTCACAGCTTGTCCTTTC+AGG | 0.086562 | 5_2:-47893733 | None:intergenic |
| CTTGCAGTATGGCAACTTTC+AGG | 0.156523 | 5_2:+47896710 | Msa0773200:intron |
| AGATCAGCTATTAAAATATT+TGG | 0.170387 | 5_2:+47896971 | Msa0773200:CDS |
| ACTGGTGCTGCTGCAATTAA+AGG | 0.238779 | 5_2:+47896775 | Msa0773200:CDS |
| TTTAGAAATTTCTAATGATT+TGG | 0.246736 | 5_2:+47896162 | Msa0773200:CDS |
| GGAGACTTTGGATTCTATAT+TGG | 0.273642 | 5_2:+47894234 | Msa0773200:CDS |
| CATCTGCTTGATCATTCTAC+TGG | 0.336534 | 5_2:-47896939 | None:intergenic |
| GTAAAACTTTAGTAATGTAT+AGG | 0.340223 | 5_2:-47897126 | None:intergenic |
| ACAACTTGAGAAAGAGTATA+TGG | 0.343510 | 5_2:+47892027 | Msa0773200:CDS |
| CATGAAGAAATCACCATTAC+TGG | 0.347783 | 5_2:-47894800 | None:intergenic |
| AACTTCTTCCAAGGAGACTT+TGG | 0.353164 | 5_2:+47894222 | Msa0773200:CDS |
| TCATATAAGCAGCAACTTGA+TGG | 0.354843 | 5_2:-47896910 | None:intergenic |
| TAAAACTTTAGTAATGTATA+GGG | 0.367702 | 5_2:-47897125 | None:intergenic |
| AGAAGATGATGGAGAGGTTG+AGG | 0.372751 | 5_2:+47891940 | Msa0773200:CDS |
| TAGTAATGTATAGGGCTTAC+CGG | 0.387732 | 5_2:-47897117 | None:intergenic |
| TAGTGAGGTGGAGGAGGAAG+AGG | 0.395864 | 5_2:+47891916 | Msa0773200:CDS |
| AGAAGAAGATGAGGGACAAA+AGG | 0.412567 | 5_2:+47891976 | Msa0773200:CDS |
| TGATGATAGTGAGGTGGAGG+AGG | 0.415199 | 5_2:+47891910 | Msa0773200:CDS |
| GGTTATCTGAATTGTATAAC+AGG | 0.419083 | 5_2:-47891605 | None:intergenic |
| AAGAATTGTTACCTTGTTGA+AGG | 0.419515 | 5_2:-47891806 | None:intergenic |
| GAAGAACTTGAAGCATCATA+AGG | 0.425208 | 5_2:+47893700 | Msa0773200:CDS |
| GAATCAGATGAGACAGTTAG+AGG | 0.431696 | 5_2:+47894181 | Msa0773200:CDS |
| TTGCAGTATGGCAACTTTCA+GGG | 0.436730 | 5_2:+47896711 | Msa0773200:intron |
| GTTTAGAAGAAGAATAAAAT+CGG | 0.437614 | 5_2:-47891626 | None:intergenic |
| AGCCATTCTCAAGTTCAAAT+AGG | 0.443809 | 5_2:+47894036 | Msa0773200:CDS |
| AAACAGAAACCACACCTTCT+GGG | 0.444736 | 5_2:-47893756 | None:intergenic |
| ATGACAATCTTGATCAAGAA+TGG | 0.451953 | 5_2:+47896185 | Msa0773200:CDS |
| GAAGATGATGGAGAGGTTGA+GGG | 0.453482 | 5_2:+47891941 | Msa0773200:CDS |
| TGGATGGAAAGATGATGAAA+TGG | 0.453888 | 5_2:+47892003 | Msa0773200:CDS |
| AGCCTATTTGAACTTGAGAA+TGG | 0.465447 | 5_2:-47894038 | None:intergenic |
| TATAGAATCCAAAGTCTCCT+TGG | 0.480413 | 5_2:-47894230 | None:intergenic |
| TAATGATAGCTCTAATGAAC+CGG | 0.480771 | 5_2:+47897098 | Msa0773200:CDS |
| GATGAGGGACAAAAGGAAAG+TGG | 0.500545 | 5_2:+47891983 | Msa0773200:CDS |
| AGGATGACACAAGTGACAAC+TGG | 0.501309 | 5_2:+47896757 | Msa0773200:CDS |
| AAACTCACAGCTCTTGCTCC+TGG | 0.502870 | 5_2:-47892060 | None:intergenic |
| TAATGATGATAGTGAGGTGG+AGG | 0.516445 | 5_2:+47891907 | Msa0773200:CDS |
| GAGGAAGAGGAAGAAGATGA+TGG | 0.516558 | 5_2:+47891929 | Msa0773200:CDS |
| AGAGGAAGAAGATGATGGAG+AGG | 0.518108 | 5_2:+47891934 | Msa0773200:CDS |
| ACCATTACTGGCTTGAGCGA+TGG | 0.525229 | 5_2:-47894788 | None:intergenic |
| GGGACAAGTCAATCAACAAA+TGG | 0.528981 | 5_2:+47896731 | Msa0773200:CDS |
| TGACAATCTTGATCAAGAAT+GGG | 0.532967 | 5_2:+47896186 | Msa0773200:CDS |
| CGATGAGGAAGAAGAAGATG+AGG | 0.533720 | 5_2:+47891967 | Msa0773200:CDS |
| AGGGACAAAAGGAAAGTGGA+TGG | 0.542308 | 5_2:+47891987 | Msa0773200:CDS |
| TTACTGGCTTGAGCGATGGA+TGG | 0.545707 | 5_2:-47894784 | None:intergenic |
| TGAACGTTGGAACGCTACCT+AGG | 0.547135 | 5_2:-47891649 | None:intergenic |
| AGATTTCTCAGATGCACAGC+CGG | 0.551895 | 5_2:+47896212 | Msa0773200:CDS |
| ATCTGCTTGATCATTCTACT+GGG | 0.552705 | 5_2:-47896938 | None:intergenic |
| TTCTATATTGGAACTGCAAG+AGG | 0.562013 | 5_2:+47894246 | Msa0773200:CDS |
| AGATTTGATAACTTCTTCCA+AGG | 0.564786 | 5_2:+47894213 | Msa0773200:CDS |
| TTATTCTTCTTCTAAACCCT+AGG | 0.568137 | 5_2:+47891632 | Msa0773200:five_prime_UTR |
| GGTTAATGATGATAGTGAGG+TGG | 0.576958 | 5_2:+47891904 | Msa0773200:intron |
| AGAGGTTGAGGGAAGCGATG+AGG | 0.589125 | 5_2:+47891952 | Msa0773200:CDS |
| TCCATCGCTCAAGCCAGTAA+TGG | 0.594131 | 5_2:+47894787 | Msa0773200:CDS |
| GTATATGGATCTTCATCACC+AGG | 0.598970 | 5_2:+47892042 | Msa0773200:CDS |
| ACAAGCTGTGAAAGCCCAGA+AGG | 0.601029 | 5_2:+47893742 | Msa0773200:CDS |
| AAGGATGAAGATCTCCTGAA+AGG | 0.606031 | 5_2:+47893719 | Msa0773200:CDS |
| AAGTTCAAATAGGCTACCCC+AGG | 0.608312 | 5_2:+47894046 | Msa0773200:CDS |
| GTAGGTTAATGATGATAGTG+AGG | 0.609411 | 5_2:+47891901 | Msa0773200:intron |
| GAACGTTGGAACGCTACCTA+GGG | 0.609630 | 5_2:-47891648 | None:intergenic |
| ATTAGAGCTATCATTAACCT+CGG | 0.615774 | 5_2:-47897091 | None:intergenic |
| CTTATGTCCCCAGGTTGCCG+AGG | 0.632820 | 5_2:+47897074 | Msa0773200:intron |
| AGTCAATCAACAAATGGCAG+AGG | 0.633983 | 5_2:+47896737 | Msa0773200:CDS |
| TGATGATATGTCCTTCAACA+AGG | 0.635737 | 5_2:+47891795 | Msa0773200:CDS |
| GATGAGGAAGAAGAAGATGA+GGG | 0.660997 | 5_2:+47891968 | Msa0773200:CDS |
| TGATATCACAGTGTGAACGT+TGG | 0.682951 | 5_2:-47891662 | None:intergenic |
| TGAATTGTATAACAGGAGCG+TGG | 0.704680 | 5_2:-47891598 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TAATATTTTATTTGTTTTAC+TGG | + | chr5_2:47893156-47893175 | Msa0773200:intron | 10.0% |
| !! | TATTAAAAGAAACAAAAATT+TGG | - | chr5_2:47896117-47896136 | None:intergenic | 10.0% |
| !!! | ATTTTTGTTTCTTTTAATAA+AGG | + | chr5_2:47896118-47896137 | Msa0773200:intron | 10.0% |
| !!! | ACATTTTTTTAAAATTATCA+CGG | - | chr5_2:47896378-47896397 | None:intergenic | 10.0% |
| !!! | AGAAACTTTAAGTTTAAAAA+TGG | + | chr5_2:47891708-47891727 | Msa0773200:exon | 15.0% |
| !!! | GAAACTTTAAGTTTAAAAAT+GGG | + | chr5_2:47891709-47891728 | Msa0773200:exon | 15.0% |
| !! | GAAAAAAAAACTAAAAGAAT+TGG | - | chr5_2:47891840-47891859 | None:intergenic | 15.0% |
| !!! | CAATTTTCTTAAACTATTAA+CGG | + | chr5_2:47892935-47892954 | Msa0773200:intron | 15.0% |
| !!! | TGTTATTATAGTTTTTTCTA+TGG | + | chr5_2:47893570-47893589 | Msa0773200:intron | 15.0% |
| !!! | TATCATATTTAAAATCTCAA+AGG | - | chr5_2:47894394-47894413 | None:intergenic | 15.0% |
| !! | ACTTACAAAAAAATCTTATA+AGG | - | chr5_2:47894543-47894562 | None:intergenic | 15.0% |
| !! | ATGTAAATATAACAAAATAC+TGG | - | chr5_2:47894655-47894674 | None:intergenic | 15.0% |
| !! | AATTCATATATTAGTTGTAT+GGG | + | chr5_2:47895607-47895626 | Msa0773200:intron | 15.0% |
| !! | AAAAGAAAGTTTATTAACTA+TGG | - | chr5_2:47895902-47895921 | None:intergenic | 15.0% |
| !!! | TATTAAAAGAAAGGAAATTT+TGG | - | chr5_2:47896010-47896029 | None:intergenic | 15.0% |
| !! | TTTAGAAATTTCTAATGATT+TGG | + | chr5_2:47896162-47896181 | Msa0773200:CDS | 15.0% |
| !!! | CATTTTTTTAAAATTATCAC+GGG | - | chr5_2:47896377-47896396 | None:intergenic | 15.0% |
| !! | GTTTAGAAGAAGAATAAAAT+CGG | - | chr5_2:47891629-47891648 | None:intergenic | 20.0% |
| !! | ATGATTAGAAATAACAAAGT+TGG | + | chr5_2:47892258-47892277 | Msa0773200:intron | 20.0% |
| !!! | ATAGTTTGGTTACTTTATTT+TGG | + | chr5_2:47893101-47893120 | Msa0773200:intron | 20.0% |
| !! | AAAAGCAAAAACTAAAAACT+TGG | + | chr5_2:47893323-47893342 | Msa0773200:intron | 20.0% |
| !!! | ATTTTTTGACTGAGATTTTT+TGG | + | chr5_2:47893402-47893421 | Msa0773200:intron | 20.0% |
| !! | ATATATCGCTTTCTTATTAA+TGG | + | chr5_2:47893459-47893478 | Msa0773200:intron | 20.0% |
| !! | TATATCGCTTTCTTATTAAT+GGG | + | chr5_2:47893460-47893479 | Msa0773200:intron | 20.0% |
| !!! | TATTATAGTTTTTTCTATGG+AGG | + | chr5_2:47893573-47893592 | Msa0773200:intron | 20.0% |
| !! | ATTATAACAGCTATATAGAA+GGG | - | chr5_2:47894974-47894993 | None:intergenic | 20.0% |
| !! | TATTATAACAGCTATATAGA+AGG | - | chr5_2:47894975-47894994 | None:intergenic | 20.0% |
| !! | TCTATATAGCTGTTATAATA+CGG | + | chr5_2:47894975-47894994 | Msa0773200:intron | 20.0% |
| !! | CTAATGAAAATCTTCAAAAT+GGG | - | chr5_2:47895054-47895073 | None:intergenic | 20.0% |
| !! | TCTAATGAAAATCTTCAAAA+TGG | - | chr5_2:47895055-47895074 | None:intergenic | 20.0% |
| !!! | TTGAAAATTATGATTTTGTC+AGG | + | chr5_2:47895231-47895250 | Msa0773200:intron | 20.0% |
| !!! | TGAAAATTATGATTTTGTCA+GGG | + | chr5_2:47895232-47895251 | Msa0773200:intron | 20.0% |
| !! | AAAAAAGTTATCTGTCTATA+TGG | + | chr5_2:47895270-47895289 | Msa0773200:intron | 20.0% |
| !! | ATGATTGTAAAACAAGTAAA+TGG | - | chr5_2:47895306-47895325 | None:intergenic | 20.0% |
| !!! | ACTTGTTTTACAATCATTAT+AGG | + | chr5_2:47895309-47895328 | Msa0773200:intron | 20.0% |
| !!! | TTTTACAATCATTATAGGAA+GGG | + | chr5_2:47895314-47895333 | Msa0773200:intron | 20.0% |
| !! | GGATTCATATAATAATTGTT+TGG | + | chr5_2:47895542-47895561 | Msa0773200:intron | 20.0% |
| !! | CAACTAATATATGAATTCTT+AGG | - | chr5_2:47895604-47895623 | None:intergenic | 20.0% |
| !! | GAATTCATATATTAGTTGTA+TGG | + | chr5_2:47895606-47895625 | Msa0773200:intron | 20.0% |
| !! | ATTCATATATTAGTTGTATG+GGG | + | chr5_2:47895608-47895627 | Msa0773200:intron | 20.0% |
| !! | CATAGAGTTTATTAAAAGAA+AGG | - | chr5_2:47896019-47896038 | None:intergenic | 20.0% |
| !!! | CTTTCTTTTAATAAACTCTA+TGG | + | chr5_2:47896017-47896036 | Msa0773200:intron | 20.0% |
| !! | AAACAAAAATTTGGTTACTT+TGG | - | chr5_2:47896108-47896127 | None:intergenic | 20.0% |
| !! | TTAGAAGGTTATAAAAATAC+CGG | - | chr5_2:47896234-47896253 | None:intergenic | 20.0% |
| !! | AATCAGGAATAAAAAATAAC+TGG | - | chr5_2:47896867-47896886 | None:intergenic | 20.0% |
| !! | AGATCAGCTATTAAAATATT+TGG | + | chr5_2:47896971-47896990 | Msa0773200:CDS | 20.0% |
| ! | TAAGTTTAAAAATGGGTAGT+AGG | + | chr5_2:47891716-47891735 | Msa0773200:exon | 25.0% |
| ! | ATTTATATTGTTAGCTAGCT+CGG | + | chr5_2:47892125-47892144 | Msa0773200:intron | 25.0% |
| !!! | ATTTCTGTGTTGATTCTTTA+CGG | - | chr5_2:47892213-47892232 | None:intergenic | 25.0% |
| !! | CCTTTCTTAATAGTTTTTCT+AGG | - | chr5_2:47892420-47892439 | None:intergenic | 25.0% |
| ! | CCTAGAAAAACTATTAAGAA+AGG | + | chr5_2:47892417-47892436 | Msa0773200:intron | 25.0% |
| !!! | TGATGTTGTTTTAATTCATG+TGG | + | chr5_2:47892494-47892513 | Msa0773200:intron | 25.0% |
| ! | AACTTTGAATCTAGCAATAA+AGG | - | chr5_2:47893079-47893098 | None:intergenic | 25.0% |
| ! | AGATTCAAAGTTTCATAGTT+TGG | + | chr5_2:47893087-47893106 | Msa0773200:intron | 25.0% |
| ! | AATCTCAGTCAAAAAATGAA+CGG | - | chr5_2:47893399-47893418 | None:intergenic | 25.0% |
| ! | ATATCGCTTTCTTATTAATG+GGG | + | chr5_2:47893461-47893480 | Msa0773200:intron | 25.0% |
| ! | TTAATGGGGAATATTTAACT+TGG | + | chr5_2:47893475-47893494 | Msa0773200:intron | 25.0% |
| !! | TAATGGGGAATATTTAACTT+GGG | + | chr5_2:47893476-47893495 | Msa0773200:intron | 25.0% |
| ! | TTCTTGCATTAAAAATTGCA+TGG | - | chr5_2:47893504-47893523 | None:intergenic | 25.0% |
| ! | ACTGTAATATAAAGCAAATG+AGG | - | chr5_2:47893839-47893858 | None:intergenic | 25.0% |
| ! | CATTTGCTTTATATTACAGT+AGG | + | chr5_2:47893839-47893858 | Msa0773200:intron | 25.0% |
| !!! | TCAAAATTTGTTTTGACTGT+AGG | + | chr5_2:47893971-47893990 | Msa0773200:intron | 25.0% |
| ! | ATCTCATTGAATCACAAAAA+TGG | - | chr5_2:47894084-47894103 | None:intergenic | 25.0% |
| ! | TGCAAAATATTAACCATGTT+TGG | - | chr5_2:47894136-47894155 | None:intergenic | 25.0% |
| !! | AAACATGGTTAATATTTTGC+AGG | + | chr5_2:47894135-47894154 | Msa0773200:intron | 25.0% |
| ! | GCTTCTCAATTAAAACTTTA+TGG | - | chr5_2:47894572-47894591 | None:intergenic | 25.0% |
| !! | ATCACTGACTAATAAATTAG+AGG | - | chr5_2:47894693-47894712 | None:intergenic | 25.0% |
| ! | TTATAACAGCTATATAGAAG+GGG | - | chr5_2:47894973-47894992 | None:intergenic | 25.0% |
| ! | ACCATAATTCATAGATAAAC+CGG | - | chr5_2:47895122-47895141 | None:intergenic | 25.0% |
| ! | TTACAGCTAGAATAACAAAT+GGG | - | chr5_2:47895153-47895172 | None:intergenic | 25.0% |
| ! | TTTACAGCTAGAATAACAAA+TGG | - | chr5_2:47895154-47895173 | None:intergenic | 25.0% |
| !!! | ATTTGTTATTCTAGCTGTAA+AGG | + | chr5_2:47895153-47895172 | Msa0773200:intron | 25.0% |
| !!! | TTTGTTATTCTAGCTGTAAA+GGG | + | chr5_2:47895154-47895173 | Msa0773200:intron | 25.0% |
| !! | CATAATTTTCAACTTATGAC+AGG | - | chr5_2:47895223-47895242 | None:intergenic | 25.0% |
| !! | GTTTTACAATCATTATAGGA+AGG | + | chr5_2:47895313-47895332 | Msa0773200:intron | 25.0% |
| ! | TTTACAATCATTATAGGAAG+GGG | + | chr5_2:47895315-47895334 | Msa0773200:intron | 25.0% |
| ! | AAGGAAAATAATCTACCAAT+TGG | - | chr5_2:47895346-47895365 | None:intergenic | 25.0% |
| ! | AACAGTAGAGAGAAATATTT+GGG | - | chr5_2:47895375-47895394 | None:intergenic | 25.0% |
| ! | TAACAGTAGAGAGAAATATT+TGG | - | chr5_2:47895376-47895395 | None:intergenic | 25.0% |
| !!! | TAATGCTATAATAGTTTTGG+TGG | - | chr5_2:47895440-47895459 | None:intergenic | 25.0% |
| !! | GCTTAATGCTATAATAGTTT+TGG | - | chr5_2:47895443-47895462 | None:intergenic | 25.0% |
| ! | TTCATATATTAGTTGTATGG+GGG | + | chr5_2:47895609-47895628 | Msa0773200:intron | 25.0% |
| ! | TTTGAGCTAATATTAACTAG+AGG | - | chr5_2:47895668-47895687 | None:intergenic | 25.0% |
| !! | TCCTTCTTTTTATTATCTGT+TGG | + | chr5_2:47895712-47895731 | Msa0773200:intron | 25.0% |
| ! | ACCAACAGATAATAAAAAGA+AGG | - | chr5_2:47895716-47895735 | None:intergenic | 25.0% |
| !! | CTTTTAATAAAGGTTCAGAA+AGG | + | chr5_2:47896128-47896147 | Msa0773200:intron | 25.0% |
| !! | AAAATTGCATGCTTTTAATC+AGG | + | chr5_2:47896798-47896817 | Msa0773200:CDS | 25.0% |
| GGTTATCTGAATTGTATAAC+AGG | - | chr5_2:47891608-47891627 | None:intergenic | 30.0% | |
| TTATTCTTCTTCTAAACCCT+AGG | + | chr5_2:47891632-47891651 | Msa0773200:five_prime_UTR | 30.0% | |
| AAGAATTGTTACCTTGTTGA+AGG | - | chr5_2:47891809-47891828 | None:intergenic | 30.0% | |
| ! | ATTGTGGATGATTTTTGTGA+TGG | + | chr5_2:47891877-47891896 | Msa0773200:intron | 30.0% |
| ! | ACAACTTGAGAAAGAGTATA+TGG | + | chr5_2:47892027-47892046 | Msa0773200:CDS | 30.0% |
| ! | TTACAATTTTTATCCGAGAC+AGG | + | chr5_2:47892151-47892170 | Msa0773200:intron | 30.0% |
| ! | GACCTATAGATTTTGTAGTA+AGG | + | chr5_2:47892346-47892365 | Msa0773200:intron | 30.0% |
| CTCCTTACTACAAAATCTAT+AGG | - | chr5_2:47892351-47892370 | None:intergenic | 30.0% | |
| !!! | TGTTGTTTTAATTCATGTGG+CGG | + | chr5_2:47892497-47892516 | Msa0773200:intron | 30.0% |
| TCTATGTAGCAGATATACTT+CGG | + | chr5_2:47892844-47892863 | Msa0773200:intron | 30.0% | |
| AATAAAGGAAAACCCAGTAA+TGG | - | chr5_2:47893064-47893083 | None:intergenic | 30.0% | |
| ! | TTACTGATTAGATAGTCCAA+GGG | - | chr5_2:47893305-47893324 | None:intergenic | 30.0% |
| ! | TTTACTGATTAGATAGTCCA+AGG | - | chr5_2:47893306-47893325 | None:intergenic | 30.0% |
| CAATTAGTAAGATGACTCAT+GGG | - | chr5_2:47893552-47893571 | None:intergenic | 30.0% | |
| ACAATTAGTAAGATGACTCA+TGG | - | chr5_2:47893553-47893572 | None:intergenic | 30.0% | |
| !! | ATCGCTGTAGTATTATTTTG+TGG | + | chr5_2:47893920-47893939 | Msa0773200:intron | 30.0% |
| TTGAATCACAAAAATGGAGA+AGG | - | chr5_2:47894078-47894097 | None:intergenic | 30.0% | |
| ! | AGATTTGATAACTTCTTCCA+AGG | + | chr5_2:47894213-47894232 | Msa0773200:CDS | 30.0% |
| TATTACTCTTTGAGCTAGTT+TGG | + | chr5_2:47894349-47894368 | Msa0773200:intron | 30.0% | |
| !!! | AAAGCTCTCTCTTTTAACTT+CGG | + | chr5_2:47894495-47894514 | Msa0773200:intron | 30.0% |
| TCAATCGTAACTACAAAACA+TGG | - | chr5_2:47894863-47894882 | None:intergenic | 30.0% | |
| ! | ATGTTTTGTAGTTACGATTG+AGG | + | chr5_2:47894862-47894881 | Msa0773200:intron | 30.0% |
| ! | TGTTTTGTAGTTACGATTGA+GGG | + | chr5_2:47894863-47894882 | Msa0773200:intron | 30.0% |
| TATAACAGCTATATAGAAGG+GGG | - | chr5_2:47894972-47894991 | None:intergenic | 30.0% | |
| ATATATCATACTGTTTAGCC+CGG | + | chr5_2:47895100-47895119 | Msa0773200:intron | 30.0% | |
| CCATAATTCATAGATAAACC+GGG | - | chr5_2:47895121-47895140 | None:intergenic | 30.0% | |
| ! | GGTAGATTATTTTCCTTTCT+TGG | + | chr5_2:47895349-47895368 | Msa0773200:intron | 30.0% |
| !!! | AATTTTAGAGTGTTAGTACC+AGG | - | chr5_2:47895797-47895816 | None:intergenic | 30.0% |
| TTAACAAGATTGTCTTAGAG+AGG | - | chr5_2:47895828-47895847 | None:intergenic | 30.0% | |
| CGTTTAAACATTACCATATC+TGG | - | chr5_2:47895965-47895984 | None:intergenic | 30.0% | |
| !! | TTGAAAACATTGATTTGTGC+TGG | + | chr5_2:47895943-47895962 | Msa0773200:intron | 30.0% |
| ATGACAATCTTGATCAAGAA+TGG | + | chr5_2:47896185-47896204 | Msa0773200:CDS | 30.0% | |
| TGACAATCTTGATCAAGAAT+GGG | + | chr5_2:47896186-47896205 | Msa0773200:CDS | 30.0% | |
| GTGATTACACTCAAAAGATA+AGG | - | chr5_2:47896493-47896512 | None:intergenic | 30.0% | |
| ATTAGAGCTATCATTAACCT+CGG | - | chr5_2:47897094-47897113 | None:intergenic | 30.0% | |
| !! | TAATGATAGCTCTAATGAAC+CGG | + | chr5_2:47897098-47897117 | Msa0773200:CDS | 30.0% |
| GCAAAAAAGTGACAGTGATT+TGG | + | chr5_2:47891762-47891781 | Msa0773200:CDS | 35.0% | |
| TGATGATATGTCCTTCAACA+AGG | + | chr5_2:47891795-47891814 | Msa0773200:CDS | 35.0% | |
| !! | TCTTTTGTGAGTTCTGATTG+TGG | + | chr5_2:47891861-47891880 | Msa0773200:intron | 35.0% |
| !! | GATGATTTTTGTGATGGAGT+AGG | + | chr5_2:47891883-47891902 | Msa0773200:intron | 35.0% |
| ! | GTAGGTTAATGATGATAGTG+AGG | + | chr5_2:47891901-47891920 | Msa0773200:intron | 35.0% |
| TGGATGGAAAGATGATGAAA+TGG | + | chr5_2:47892003-47892022 | Msa0773200:CDS | 35.0% | |
| TAAGACTGACAATGTTGTGT+GGG | + | chr5_2:47892174-47892193 | Msa0773200:intron | 35.0% | |
| ACACAGAAATAAGTTAAGCG+TGG | + | chr5_2:47892223-47892242 | Msa0773200:intron | 35.0% | |
| ! | AAGTTAAGCGTGGACTAAAT+AGG | + | chr5_2:47892233-47892252 | Msa0773200:intron | 35.0% |
| ! | TCCACGATCTTTTCTACTAT+GGG | - | chr5_2:47892291-47892310 | None:intergenic | 35.0% |
| ! | TTCCACGATCTTTTCTACTA+TGG | - | chr5_2:47892292-47892311 | None:intergenic | 35.0% |
| AGATCGTGGAAATTAAGCTT+AGG | + | chr5_2:47892301-47892320 | Msa0773200:intron | 35.0% | |
| !!! | GTTGTTTTAATTCATGTGGC+GGG | + | chr5_2:47892498-47892517 | Msa0773200:intron | 35.0% |
| ATTGAATGAGAGACATGTGT+TGG | + | chr5_2:47892652-47892671 | Msa0773200:intron | 35.0% | |
| CTGCTACATAGAATGTATGT+AGG | - | chr5_2:47892836-47892855 | None:intergenic | 35.0% | |
| AGCAGATATACTTCGGATTA+AGG | + | chr5_2:47892851-47892870 | Msa0773200:intron | 35.0% | |
| GCAGATATACTTCGGATTAA+GGG | + | chr5_2:47892852-47892871 | Msa0773200:intron | 35.0% | |
| ATATACTTCGGATTAAGGGA+TGG | + | chr5_2:47892856-47892875 | Msa0773200:intron | 35.0% | |
| TATTGTAAGCTATGAAGCAC+TGG | - | chr5_2:47892983-47893002 | None:intergenic | 35.0% | |
| ACTTGTTTCAGTTGAAGACT+TGG | + | chr5_2:47893124-47893143 | Msa0773200:intron | 35.0% | |
| TCTCATTTGAATCTTACCCT+TGG | + | chr5_2:47893286-47893305 | Msa0773200:intron | 35.0% | |
| CAAATCTCATCGATAAGGAA+TGG | - | chr5_2:47893631-47893650 | None:intergenic | 35.0% | |
| TTCCTTATCGATGAGATTTG+TGG | + | chr5_2:47893631-47893650 | Msa0773200:intron | 35.0% | |
| ATCCACAAATCTCATCGATA+AGG | - | chr5_2:47893636-47893655 | None:intergenic | 35.0% | |
| ! | AGTTCTTCAAAGTGTTTCTG+AGG | - | chr5_2:47893688-47893707 | None:intergenic | 35.0% |
| ! | GAAGAACTTGAAGCATCATA+AGG | + | chr5_2:47893700-47893719 | Msa0773200:CDS | 35.0% |
| GTGTGGTTTCTGTTTCATTA+TGG | + | chr5_2:47893764-47893783 | Msa0773200:intron | 35.0% | |
| ! | CTCAAGAATTTTGTACCAGA+GGG | - | chr5_2:47893997-47894016 | None:intergenic | 35.0% |
| AGCCATTCTCAAGTTCAAAT+AGG | + | chr5_2:47894036-47894055 | Msa0773200:CDS | 35.0% | |
| AGCCTATTTGAACTTGAGAA+TGG | - | chr5_2:47894041-47894060 | None:intergenic | 35.0% | |
| AATGGAGAAGGAAAATACCT+GGG | - | chr5_2:47894066-47894085 | None:intergenic | 35.0% | |
| AAATGGAGAAGGAAAATACC+TGG | - | chr5_2:47894067-47894086 | None:intergenic | 35.0% | |
| !! | TTTTATCCATCGAGTTGTCA+TGG | + | chr5_2:47894110-47894129 | Msa0773200:intron | 35.0% |
| TATAGAATCCAAAGTCTCCT+TGG | - | chr5_2:47894233-47894252 | None:intergenic | 35.0% | |
| GGAGACTTTGGATTCTATAT+TGG | + | chr5_2:47894234-47894253 | Msa0773200:CDS | 35.0% | |
| TTCTATATTGGAACTGCAAG+AGG | + | chr5_2:47894246-47894265 | Msa0773200:CDS | 35.0% | |
| AGCTAGAAGTTCATTCAAAC+AGG | + | chr5_2:47894599-47894618 | Msa0773200:intron | 35.0% | |
| ! | AGTTTTCATACGACATGACA+TGG | - | chr5_2:47894626-47894645 | None:intergenic | 35.0% |
| CATGAAGAAATCACCATTAC+TGG | - | chr5_2:47894803-47894822 | None:intergenic | 35.0% | |
| ! | ACCATGCTTTGCTTCTATTT+TGG | + | chr5_2:47894998-47895017 | Msa0773200:intron | 35.0% |
| ACCAAAATAGAAGCAAAGCA+TGG | - | chr5_2:47895002-47895021 | None:intergenic | 35.0% | |
| CCCGGTTTATCTATGAATTA+TGG | + | chr5_2:47895118-47895137 | Msa0773200:intron | 35.0% | |
| AATGGAGAGAAGGAAAAGTT+GGG | + | chr5_2:47895184-47895203 | Msa0773200:intron | 35.0% | |
| AGAAATATTTGGGCCAAGAA+AGG | - | chr5_2:47895365-47895384 | None:intergenic | 35.0% | |
| CTACTGTTATTGTAAGCAGA+TGG | + | chr5_2:47895387-47895406 | Msa0773200:intron | 35.0% | |
| TGTAAGCAGATGGAGAAATA+TGG | + | chr5_2:47895397-47895416 | Msa0773200:intron | 35.0% | |
| TATGAATTCTTAGGCCTACA+TGG | - | chr5_2:47895595-47895614 | None:intergenic | 35.0% | |
| TGGCCAACTGTTCTTTATAT+GGG | + | chr5_2:47895642-47895661 | Msa0773200:intron | 35.0% | |
| AACAGAATTAGAGAGACGAA+GGG | - | chr5_2:47895768-47895787 | None:intergenic | 35.0% | |
| AAACAGAATTAGAGAGACGA+AGG | - | chr5_2:47895769-47895788 | None:intergenic | 35.0% | |
| !! | ACATTGATTTGTGCCAGATA+TGG | + | chr5_2:47895949-47895968 | Msa0773200:intron | 35.0% |
| GCAAAAATAGTGCAGTTAGA+AGG | - | chr5_2:47896249-47896268 | None:intergenic | 35.0% | |
| !!! | AACTGCACTATTTTTGCGAT+AGG | + | chr5_2:47896252-47896271 | Msa0773200:intron | 35.0% |
| ! | TTTAAAATTATCACGGGTGC+CGG | - | chr5_2:47896371-47896390 | None:intergenic | 35.0% |
| GTAATCACATTCACATGTGT+CGG | + | chr5_2:47896409-47896428 | Msa0773200:intron | 35.0% | |
| !! | ACGGCTTTTATCAAAAGTGT+CGG | + | chr5_2:47896447-47896466 | Msa0773200:intron | 35.0% |
| TTGAGTGTAATCACATGTGT+CGG | + | chr5_2:47896499-47896518 | Msa0773200:intron | 35.0% | |
| CACAATTGTATCTTGCAGTA+TGG | + | chr5_2:47896699-47896718 | Msa0773200:intron | 35.0% | |
| TCATATAAGCAGCAACTTGA+TGG | - | chr5_2:47896913-47896932 | None:intergenic | 35.0% | |
| ATCTGCTTGATCATTCTACT+GGG | - | chr5_2:47896941-47896960 | None:intergenic | 35.0% | |
| CAGTAAGTGTCAATGACAAA+GGG | - | chr5_2:47897053-47897072 | None:intergenic | 35.0% | |
| TAGTAATGTATAGGGCTTAC+CGG | - | chr5_2:47897120-47897139 | None:intergenic | 35.0% | |
| TGAATTGTATAACAGGAGCG+TGG | - | chr5_2:47891601-47891620 | None:intergenic | 40.0% | |
| TGATATCACAGTGTGAACGT+TGG | - | chr5_2:47891665-47891684 | None:intergenic | 40.0% | |
| ! | GGTTAATGATGATAGTGAGG+TGG | + | chr5_2:47891904-47891923 | Msa0773200:intron | 40.0% |
| ! | TAATGATGATAGTGAGGTGG+AGG | + | chr5_2:47891907-47891926 | Msa0773200:CDS | 40.0% |
| GATGAGGAAGAAGAAGATGA+GGG | + | chr5_2:47891968-47891987 | Msa0773200:CDS | 40.0% | |
| AGAAGAAGATGAGGGACAAA+AGG | + | chr5_2:47891976-47891995 | Msa0773200:CDS | 40.0% | |
| GTATATGGATCTTCATCACC+AGG | + | chr5_2:47892042-47892061 | Msa0773200:CDS | 40.0% | |
| TATATTGTTAGCTAGCTCGG+AGG | + | chr5_2:47892128-47892147 | Msa0773200:intron | 40.0% | |
| ATTGTCAGTCTTACCTGTCT+CGG | - | chr5_2:47892167-47892186 | None:intergenic | 40.0% | |
| GTAAGACTGACAATGTTGTG+TGG | + | chr5_2:47892173-47892192 | Msa0773200:intron | 40.0% | |
| TGTTGTGTGGGAATGAATGT+TGG | + | chr5_2:47892186-47892205 | Msa0773200:intron | 40.0% | |
| GTTGTGTGGGAATGAATGTT+GGG | + | chr5_2:47892187-47892206 | Msa0773200:intron | 40.0% | |
| ACCCATAGTAGAAAAGATCG+TGG | + | chr5_2:47892287-47892306 | Msa0773200:intron | 40.0% | |
| TCGTGGAAATTAAGCTTAGG+TGG | + | chr5_2:47892304-47892323 | Msa0773200:intron | 40.0% | |
| TTAGGTGGTTTGAGCTTGTA+GGG | + | chr5_2:47892319-47892338 | Msa0773200:intron | 40.0% | |
| AGTAAGGAGAGTAGATCAGA+TGG | + | chr5_2:47892362-47892381 | Msa0773200:intron | 40.0% | |
| ! | AAGTCTTATCCCACTAAGTG+GGG | - | chr5_2:47892524-47892543 | None:intergenic | 40.0% |
| ! | GAAGTCTTATCCCACTAAGT+GGG | - | chr5_2:47892525-47892544 | None:intergenic | 40.0% |
| TGCGATGTTTGTATCACTGT+TGG | - | chr5_2:47892582-47892601 | None:intergenic | 40.0% | |
| GCAAATACAAGTTACGTACC+TGG | + | chr5_2:47892770-47892789 | Msa0773200:intron | 40.0% | |
| TACAAGTTACGTACCTGGTA+TGG | + | chr5_2:47892775-47892794 | Msa0773200:intron | 40.0% | |
| ACAAGTTACGTACCTGGTAT+GGG | + | chr5_2:47892776-47892795 | Msa0773200:intron | 40.0% | |
| ! | ATGTATGTAGGTCTGAAGCA+TGG | - | chr5_2:47892824-47892843 | None:intergenic | 40.0% |
| GGTGTTTGTTTGACATGTGT+TGG | + | chr5_2:47892882-47892901 | Msa0773200:intron | 40.0% | |
| ! | ATGTGTTGGTGTCTGACATA+TGG | + | chr5_2:47892896-47892915 | Msa0773200:intron | 40.0% |
| AGCTTACAATAGACCCATGA+TGG | + | chr5_2:47892992-47893011 | Msa0773200:intron | 40.0% | |
| GCTTACAATAGACCCATGAT+GGG | + | chr5_2:47892993-47893012 | Msa0773200:intron | 40.0% | |
| GAAAGAGTTGAACCCATCAT+GGG | - | chr5_2:47893008-47893027 | None:intergenic | 40.0% | |
| !! | ATGATGGGTTCAACTCTTTC+CGG | + | chr5_2:47893008-47893027 | Msa0773200:intron | 40.0% |
| ! | AGAGGAGGTTTTCCATTACT+GGG | + | chr5_2:47893049-47893068 | Msa0773200:intron | 40.0% |
| ! | TCAGTTGAAGACTTGGTTTC+TGG | + | chr5_2:47893131-47893150 | Msa0773200:intron | 40.0% |
| AAGGATGAAGATCTCCTGAA+AGG | + | chr5_2:47893719-47893738 | Msa0773200:CDS | 40.0% | |
| AAACAGAAACCACACCTTCT+GGG | - | chr5_2:47893759-47893778 | None:intergenic | 40.0% | |
| TTATGGAGTAGACTCGTGTT+TGG | + | chr5_2:47893781-47893800 | Msa0773200:intron | 40.0% | |
| ! | GCTCAAGAATTTTGTACCAG+AGG | - | chr5_2:47893998-47894017 | None:intergenic | 40.0% |
| ATGGAGAAGGAAAATACCTG+GGG | - | chr5_2:47894065-47894084 | None:intergenic | 40.0% | |
| GAATCAGATGAGACAGTTAG+AGG | + | chr5_2:47894181-47894200 | Msa0773200:CDS | 40.0% | |
| AACTTCTTCCAAGGAGACTT+TGG | + | chr5_2:47894222-47894241 | Msa0773200:CDS | 40.0% | |
| !! | TGATCTCTTTTTCGTGTTCC+AGG | + | chr5_2:47894744-47894763 | Msa0773200:intron | 40.0% |
| !! | AGTTGCTTTAGGAATGTGGA+AGG | + | chr5_2:47894932-47894951 | Msa0773200:intron | 40.0% |
| !! | GTTGCTTTAGGAATGTGGAA+GGG | + | chr5_2:47894933-47894952 | Msa0773200:intron | 40.0% |
| TTTCCTTCTCTCCATTCTTG+CGG | - | chr5_2:47895180-47895199 | None:intergenic | 40.0% | |
| GAATGGAGAGAAGGAAAAGT+TGG | + | chr5_2:47895183-47895202 | Msa0773200:intron | 40.0% | |
| TGTCAGGGAAGAACTATTAC+AGG | + | chr5_2:47895247-47895266 | Msa0773200:intron | 40.0% | |
| !! | TTTGGTGGACTCTACATGTT+AGG | - | chr5_2:47895425-47895444 | None:intergenic | 40.0% |
| CTGGCCAACTGTTCTTTATA+TGG | + | chr5_2:47895641-47895660 | Msa0773200:intron | 40.0% | |
| AGGCCCATATAAAGAACAGT+TGG | - | chr5_2:47895648-47895667 | None:intergenic | 40.0% | |
| GATTGTCTTAGAGAGGACAA+AGG | - | chr5_2:47895821-47895840 | None:intergenic | 40.0% | |
| CATAAGTGTTAGTGCTACAG+AGG | + | chr5_2:47896548-47896567 | Msa0773200:intron | 40.0% | |
| ! | GTTCTTTTCACCTGTCTGTT+TGG | + | chr5_2:47896665-47896684 | Msa0773200:intron | 40.0% |
| TTGCAGTATGGCAACTTTCA+GGG | + | chr5_2:47896711-47896730 | Msa0773200:intron | 40.0% | |
| GGGACAAGTCAATCAACAAA+TGG | + | chr5_2:47896731-47896750 | Msa0773200:CDS | 40.0% | |
| AGTCAATCAACAAATGGCAG+AGG | + | chr5_2:47896737-47896756 | Msa0773200:CDS | 40.0% | |
| ATCAGGTAAAGTTCTGTGAC+TGG | + | chr5_2:47896815-47896834 | Msa0773200:intron | 40.0% | |
| CATCTGCTTGATCATTCTAC+TGG | - | chr5_2:47896942-47896961 | None:intergenic | 40.0% | |
| CCAGTAAGTGTCAATGACAA+AGG | - | chr5_2:47897054-47897073 | None:intergenic | 40.0% | |
| CCTTTGTCATTGACACTTAC+TGG | + | chr5_2:47897051-47897070 | Msa0773200:intron | 40.0% | |
| GAGGAAGAGGAAGAAGATGA+TGG | + | chr5_2:47891929-47891948 | Msa0773200:CDS | 45.0% | |
| !! | AGAGGAAGAAGATGATGGAG+AGG | + | chr5_2:47891934-47891953 | Msa0773200:CDS | 45.0% |
| !! | AGAAGATGATGGAGAGGTTG+AGG | + | chr5_2:47891940-47891959 | Msa0773200:CDS | 45.0% |
| !! | GAAGATGATGGAGAGGTTGA+GGG | + | chr5_2:47891941-47891960 | Msa0773200:CDS | 45.0% |
| CGATGAGGAAGAAGAAGATG+AGG | + | chr5_2:47891967-47891986 | Msa0773200:CDS | 45.0% | |
| GATGAGGGACAAAAGGAAAG+TGG | + | chr5_2:47891983-47892002 | Msa0773200:CDS | 45.0% | |
| AGGGACAAAAGGAAAGTGGA+TGG | + | chr5_2:47891987-47892006 | Msa0773200:CDS | 45.0% | |
| CTTAGGTGGTTTGAGCTTGT+AGG | + | chr5_2:47892318-47892337 | Msa0773200:intron | 45.0% | |
| AAGGAGAGTAGATCAGATGG+AGG | + | chr5_2:47892365-47892384 | Msa0773200:intron | 45.0% | |
| AGGAGAGTAGATCAGATGGA+GGG | + | chr5_2:47892366-47892385 | Msa0773200:intron | 45.0% | |
| ! | CGAAGTCTTATCCCACTAAG+TGG | - | chr5_2:47892526-47892545 | None:intergenic | 45.0% |
| GTGATACAAACATCGCACAC+TGG | + | chr5_2:47892585-47892604 | Msa0773200:intron | 45.0% | |
| ! | TGAGAGACATGTGTTGGTGT+CGG | + | chr5_2:47892658-47892677 | Msa0773200:intron | 45.0% |
| ! | AACAGTGAAGTACCCATACC+AGG | - | chr5_2:47892791-47892810 | None:intergenic | 45.0% |
| CTTCGGATTAAGGGATGGTT+TGG | + | chr5_2:47892861-47892880 | Msa0773200:intron | 45.0% | |
| GGAAAGAGTTGAACCCATCA+TGG | - | chr5_2:47893009-47893028 | None:intergenic | 45.0% | |
| !! | TGATGGGTTCAACTCTTTCC+GGG | + | chr5_2:47893009-47893028 | Msa0773200:intron | 45.0% |
| ! | GAGAGGAGGTTTTCCATTAC+TGG | + | chr5_2:47893048-47893067 | Msa0773200:intron | 45.0% |
| CTTTCACAGCTTGTCCTTTC+AGG | - | chr5_2:47893736-47893755 | None:intergenic | 45.0% | |
| GAAACAGAAACCACACCTTC+TGG | - | chr5_2:47893760-47893779 | None:intergenic | 45.0% | |
| AAGTTCAAATAGGCTACCCC+AGG | + | chr5_2:47894046-47894065 | Msa0773200:CDS | 45.0% | |
| TATTGGAACTGCAAGAGGTG+TGG | + | chr5_2:47894251-47894270 | Msa0773200:intron | 45.0% | |
| ! | AATCGCACCACAGTTGCTTT+AGG | + | chr5_2:47894921-47894940 | Msa0773200:intron | 45.0% |
| CCACATTCCTAAAGCAACTG+TGG | - | chr5_2:47894931-47894950 | None:intergenic | 45.0% | |
| !! | CCACAGTTGCTTTAGGAATG+TGG | + | chr5_2:47894928-47894947 | Msa0773200:intron | 45.0% |
| CAATGCCTTAAATGCTGCTG+AGG | + | chr5_2:47895516-47895535 | Msa0773200:intron | 45.0% | |
| ! | TTGTTTGGTGAGCAGAGTAG+AGG | + | chr5_2:47895557-47895576 | Msa0773200:intron | 45.0% |
| AGAGAGACGAAGGGAAAGTT+TGG | - | chr5_2:47895759-47895778 | None:intergenic | 45.0% | |
| TCTAATTCTGTTTCCGCACC+TGG | + | chr5_2:47895776-47895795 | Msa0773200:intron | 45.0% | |
| ! | TAGAGTGTTAGTACCAGGTG+CGG | - | chr5_2:47895792-47895811 | None:intergenic | 45.0% |
| AGATTTCTCAGATGCACAGC+CGG | + | chr5_2:47896212-47896231 | Msa0773200:CDS | 45.0% | |
| ! | CATGCTATGAAGCACCTACA+CGG | + | chr5_2:47896324-47896343 | Msa0773200:intron | 45.0% |
| !! | TCGGTGTCAGACACTAGATA+CGG | + | chr5_2:47896428-47896447 | Msa0773200:intron | 45.0% |
| !! | TCGGTGTCAGACACTAGATA+CGG | + | chr5_2:47896428-47896447 | Msa0773200:intron | 45.0% |
| CAGCTAAAGTGCAAAAGCTG+CGG | - | chr5_2:47896622-47896641 | None:intergenic | 45.0% | |
| ATAGCATCAGCCAAACAGAC+AGG | - | chr5_2:47896678-47896697 | None:intergenic | 45.0% | |
| CTTGCAGTATGGCAACTTTC+AGG | + | chr5_2:47896710-47896729 | Msa0773200:intron | 45.0% | |
| AGGATGACACAAGTGACAAC+TGG | + | chr5_2:47896757-47896776 | Msa0773200:CDS | 45.0% | |
| !! | ACTGGTGCTGCTGCAATTAA+AGG | + | chr5_2:47896775-47896794 | Msa0773200:CDS | 45.0% |
| AAAGTTCTGTGACTGGACTG+TGG | + | chr5_2:47896822-47896841 | Msa0773200:intron | 45.0% | |
| CCTGCAACAGGACATAAATC+AGG | - | chr5_2:47896883-47896902 | None:intergenic | 45.0% | |
| CCTGATTTATGTCCTGTTGC+AGG | + | chr5_2:47896880-47896899 | Msa0773200:intron | 45.0% | |
| ATCATTAACCTCGGCAACCT+GGG | - | chr5_2:47897085-47897104 | None:intergenic | 45.0% | |
| TATCATTAACCTCGGCAACC+TGG | - | chr5_2:47897086-47897105 | None:intergenic | 45.0% | |
| GAACGTTGGAACGCTACCTA+GGG | - | chr5_2:47891651-47891670 | None:intergenic | 50.0% | |
| TGAACGTTGGAACGCTACCT+AGG | - | chr5_2:47891652-47891671 | None:intergenic | 50.0% | |
| ! | TGATGATAGTGAGGTGGAGG+AGG | + | chr5_2:47891910-47891929 | Msa0773200:CDS | 50.0% |
| AAACTCACAGCTCTTGCTCC+TGG | - | chr5_2:47892063-47892082 | None:intergenic | 50.0% | |
| ! | GATGGGTTCAACTCTTTCCG+GGG | + | chr5_2:47893010-47893029 | Msa0773200:intron | 50.0% |
| ACAAGCTGTGAAAGCCCAGA+AGG | + | chr5_2:47893742-47893761 | Msa0773200:CDS | 50.0% | |
| !!! | TGTTTTGACTGTAGGCCCTC+TGG | + | chr5_2:47893979-47893998 | Msa0773200:intron | 50.0% |
| GTTTGGCCATGACAACTCGA+TGG | - | chr5_2:47894119-47894138 | None:intergenic | 50.0% | |
| CGAGTTGTCATGGCCAAACA+TGG | + | chr5_2:47894120-47894139 | Msa0773200:intron | 50.0% | |
| GATTCTTTGCGATCAGAGCC+TGG | - | chr5_2:47894765-47894784 | None:intergenic | 50.0% | |
| !! | TTACTGGCTTGAGCGATGGA+TGG | - | chr5_2:47894787-47894806 | None:intergenic | 50.0% |
| TCCATCGCTCAAGCCAGTAA+TGG | + | chr5_2:47894787-47894806 | Msa0773200:CDS | 50.0% | |
| !! | ACCATTACTGGCTTGAGCGA+TGG | - | chr5_2:47894791-47894810 | None:intergenic | 50.0% |
| CCTCACCTCAGCAGCATTTA+AGG | - | chr5_2:47895524-47895543 | None:intergenic | 50.0% | |
| CCTTAAATGCTGCTGAGGTG+AGG | + | chr5_2:47895521-47895540 | Msa0773200:intron | 50.0% | |
| GGACTGACAAGTGTCCATGT+AGG | + | chr5_2:47895578-47895597 | Msa0773200:intron | 50.0% | |
| ACCGGACATGATACTGACAC+CGG | + | chr5_2:47896349-47896368 | Msa0773200:intron | 50.0% | |
| !! | CAAAAGTGTCGGTGCTACAG+AGG | + | chr5_2:47896458-47896477 | Msa0773200:intron | 50.0% |
| AAAGTGCAAAAGCTGCGGCA+TGG | - | chr5_2:47896617-47896636 | None:intergenic | 50.0% | |
| GATGGCTGATATCCTGCAAC+AGG | - | chr5_2:47896895-47896914 | None:intergenic | 50.0% | |
| !! | ACTTACTGGCTTATGTCCCC+AGG | + | chr5_2:47897065-47897084 | Msa0773200:intron | 50.0% |
| TCATTAACCTCGGCAACCTG+GGG | - | chr5_2:47897084-47897103 | None:intergenic | 50.0% | |
| TAGTGAGGTGGAGGAGGAAG+AGG | + | chr5_2:47891916-47891935 | Msa0773200:CDS | 55.0% | |
| AGAGGTTGAGGGAAGCGATG+AGG | + | chr5_2:47891952-47891971 | Msa0773200:CDS | 55.0% | |
| TCTTTCCGGGGAACCTGTCA+CGG | + | chr5_2:47893022-47893041 | Msa0773200:intron | 55.0% | |
| CTGTGAAAGCCCAGAAGGTG+TGG | + | chr5_2:47893747-47893766 | Msa0773200:intron | 55.0% | |
| GCTGTAAAGGGCCGCAAGAA+TGG | + | chr5_2:47895166-47895185 | Msa0773200:intron | 55.0% | |
| TAGGAAGGGGCTCGTCCAAT+TGG | + | chr5_2:47895328-47895347 | Msa0773200:intron | 55.0% | |
| TGTATGGGGGAGTCGAGAAC+TGG | + | chr5_2:47895622-47895641 | Msa0773200:intron | 55.0% | |
| ! | TGAAGCACCTACACGGACAC+CGG | + | chr5_2:47896331-47896350 | Msa0773200:intron | 55.0% |
| ATCATGTCCGGTGTCCGTGT+AGG | - | chr5_2:47896341-47896360 | None:intergenic | 55.0% | |
| ! | GCCGGTGTCAGTATCATGTC+CGG | - | chr5_2:47896353-47896372 | None:intergenic | 55.0% |
| GGGCCGCAAGAATGGAGAGA+AGG | + | chr5_2:47895174-47895193 | Msa0773200:intron | 60.0% | |
| CTTATGTCCCCAGGTTGCCG+AGG | + | chr5_2:47897074-47897093 | Msa0773200:intron | 60.0% | |
| !! | ATGTGGCGGGCCCCACTTAG+TGG | + | chr5_2:47892511-47892530 | Msa0773200:intron | 65.0% |
| !! | TGTGGCGGGCCCCACTTAGT+GGG | + | chr5_2:47892512-47892531 | Msa0773200:intron | 65.0% |
| TTCCGGGGAACCTGTCACGG+TGG | + | chr5_2:47893025-47893044 | Msa0773200:intron | 65.0% | |
| TCCGGGGAACCTGTCACGGT+GGG | + | chr5_2:47893026-47893045 | Msa0773200:intron | 65.0% | |
| TCCCACCGTGACAGGTTCCC+CGG | - | chr5_2:47893030-47893049 | None:intergenic | 65.0% | |
| GGAACCTGTCACGGTGGGAG+AGG | + | chr5_2:47893031-47893050 | Msa0773200:intron | 65.0% | |
| ACCTGTCACGGTGGGAGAGG+AGG | + | chr5_2:47893034-47893053 | Msa0773200:intron | 65.0% | |
| ACCTCCTCTCCCACCGTGAC+AGG | - | chr5_2:47893038-47893057 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_2 | gene | 47891593 | 47897140 | 47891593 | ID=Msa0773200;Name=Msa0773200 |
| chr5_2 | mRNA | 47891593 | 47897140 | 47891593 | ID=Msa0773200-mRNA-1;Parent=Msa0773200;Name=Msa0773200-mRNA-1;_AED=0.05;_eAED=0.05;_QI=134|0.88|0.8|1|1|1|10|0|302 |
| chr5_2 | exon | 47891593 | 47891816 | 47891593 | ID=Msa0773200-mRNA-1:exon:14368;Parent=Msa0773200-mRNA-1 |
| chr5_2 | exon | 47891905 | 47892074 | 47891905 | ID=Msa0773200-mRNA-1:exon:14369;Parent=Msa0773200-mRNA-1 |
| chr5_2 | exon | 47893691 | 47893763 | 47893691 | ID=Msa0773200-mRNA-1:exon:14370;Parent=Msa0773200-mRNA-1 |
| chr5_2 | exon | 47893993 | 47894067 | 47893993 | ID=Msa0773200-mRNA-1:exon:14371;Parent=Msa0773200-mRNA-1 |
| chr5_2 | exon | 47894157 | 47894267 | 47894157 | ID=Msa0773200-mRNA-1:exon:14372;Parent=Msa0773200-mRNA-1 |
| chr5_2 | exon | 47894766 | 47894808 | 47894766 | ID=Msa0773200-mRNA-1:exon:14373;Parent=Msa0773200-mRNA-1 |
| chr5_2 | exon | 47896140 | 47896233 | 47896140 | ID=Msa0773200-mRNA-1:exon:14374;Parent=Msa0773200-mRNA-1 |
| chr5_2 | exon | 47896717 | 47896819 | 47896717 | ID=Msa0773200-mRNA-1:exon:14375;Parent=Msa0773200-mRNA-1 |
| chr5_2 | exon | 47896902 | 47896997 | 47896902 | ID=Msa0773200-mRNA-1:exon:14376;Parent=Msa0773200-mRNA-1 |
| chr5_2 | exon | 47897087 | 47897140 | 47897087 | ID=Msa0773200-mRNA-1:exon:14377;Parent=Msa0773200-mRNA-1 |
| chr5_2 | five_prime_UTR | 47891593 | 47891726 | 47891593 | ID=Msa0773200-mRNA-1:five_prime_utr;Parent=Msa0773200-mRNA-1 |
| chr5_2 | CDS | 47891727 | 47891816 | 47891727 | ID=Msa0773200-mRNA-1:cds;Parent=Msa0773200-mRNA-1 |
| chr5_2 | CDS | 47891905 | 47892074 | 47891905 | ID=Msa0773200-mRNA-1:cds;Parent=Msa0773200-mRNA-1 |
| chr5_2 | CDS | 47893691 | 47893763 | 47893691 | ID=Msa0773200-mRNA-1:cds;Parent=Msa0773200-mRNA-1 |
| chr5_2 | CDS | 47893993 | 47894067 | 47893993 | ID=Msa0773200-mRNA-1:cds;Parent=Msa0773200-mRNA-1 |
| chr5_2 | CDS | 47894157 | 47894267 | 47894157 | ID=Msa0773200-mRNA-1:cds;Parent=Msa0773200-mRNA-1 |
| chr5_2 | CDS | 47894766 | 47894808 | 47894766 | ID=Msa0773200-mRNA-1:cds;Parent=Msa0773200-mRNA-1 |
| chr5_2 | CDS | 47896140 | 47896233 | 47896140 | ID=Msa0773200-mRNA-1:cds;Parent=Msa0773200-mRNA-1 |
| chr5_2 | CDS | 47896717 | 47896819 | 47896717 | ID=Msa0773200-mRNA-1:cds;Parent=Msa0773200-mRNA-1 |
| chr5_2 | CDS | 47896902 | 47896997 | 47896902 | ID=Msa0773200-mRNA-1:cds;Parent=Msa0773200-mRNA-1 |
| chr5_2 | CDS | 47897087 | 47897140 | 47897087 | ID=Msa0773200-mRNA-1:cds;Parent=Msa0773200-mRNA-1 |
| Gene Sequence |
| Protein sequence |
