Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0136380 | XP_013470010.1 | 91.228 | 855 | 22 | 2 | 1 | 839 | 26 | 843 | 0.0 | 1462 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0136380 | sp|Q8H991|HAZ1_ORYSJ | 37.537 | 682 | 289 | 17 | 141 | 731 | 37 | 672 | 2.24e-113 | 367 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0136380 | A0A072VRI3 | 91.228 | 855 | 22 | 2 | 1 | 839 | 26 | 843 | 0.0 | 1462 |
Gene ID | Type | Classification |
---|---|---|
Msa0136380 | TF | HB-PHD |
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
Msa0010770 | Msa0136380 | 0.808736 | 2.674477e-50 | -8.615850e-47 |
Msa0027390 | Msa0136380 | 0.830422 | 2.963828e-55 | -8.615850e-47 |
Msa0045490 | Msa0136380 | 0.823587 | 1.278564e-53 | -8.615850e-47 |
Msa0081230 | Msa0136380 | 0.801688 | 7.999993e-49 | -8.615850e-47 |
Msa0096580 | Msa0136380 | 0.801875 | 7.325304e-49 | -8.615850e-47 |
Msa0097950 | Msa0136380 | 0.820838 | 5.549686e-53 | -8.615850e-47 |
Msa0104610 | Msa0136380 | 0.833623 | 4.794516e-56 | -8.615850e-47 |
Msa0108870 | Msa0136380 | 0.811842 | 5.718311e-51 | -8.615850e-47 |
Msa0133630 | Msa0136380 | 0.803021 | 4.252595e-49 | -8.615850e-47 |
Msa0136380 | Msa0156230 | 0.806998 | 6.263730e-50 | -8.615850e-47 |
Msa0136380 | Msa0165300 | 0.834771 | 2.472401e-56 | -8.615850e-47 |
Msa0136380 | Msa0179000 | 0.864491 | 1.170229e-64 | -8.615850e-47 |
Msa0136380 | Msa0187500 | 0.828887 | 7.003856e-55 | -8.615850e-47 |
Msa0136380 | Msa0205850 | 0.803750 | 3.003102e-49 | -8.615850e-47 |
Msa0136380 | Msa0227400 | 0.805971 | 1.031423e-49 | -8.615850e-47 |
Msa0136380 | Msa0239450 | 0.802686 | 4.988085e-49 | -8.615850e-47 |
Msa0136380 | Msa0239940 | 0.848033 | 7.932186e-60 | -8.615850e-47 |
Msa0136380 | Msa0245850 | 0.804282 | 2.328086e-49 | -8.615850e-47 |
Msa0136380 | Msa0250670 | 0.816627 | 5.016812e-52 | -8.615850e-47 |
Msa0136380 | Msa0259270 | 0.815516 | 8.883381e-52 | -8.615850e-47 |
Msa0136380 | Msa0264930 | 0.800861 | 1.181570e-48 | -8.615850e-47 |
Msa0136380 | Msa0267870 | 0.830735 | 2.483674e-55 | -8.615850e-47 |
Msa0136380 | Msa0288730 | 0.800911 | 1.153906e-48 | -8.615850e-47 |
Msa0136380 | Msa0289400 | 0.818719 | 1.692776e-52 | -8.615850e-47 |
Msa0136380 | Msa0295590 | 0.819530 | 1.106332e-52 | -8.615850e-47 |
Msa0136380 | Msa0308200 | 0.831073 | 2.052592e-55 | -8.615850e-47 |
Msa0136380 | Msa0308220 | 0.833750 | 4.456202e-56 | -8.615850e-47 |
Msa0136380 | Msa0318720 | 0.801985 | 6.954433e-49 | -8.615850e-47 |
Msa0136380 | Msa0322590 | 0.807123 | 5.894459e-50 | -8.615850e-47 |
Msa0136380 | Msa0327410 | 0.823650 | 1.235901e-53 | -8.615850e-47 |
Msa0136380 | Msa0343190 | 0.819022 | 1.444224e-52 | -8.615850e-47 |
Msa0136380 | Msa0381000 | 0.809454 | 1.877040e-50 | -8.615850e-47 |
Msa0136380 | Msa0381080 | 0.821094 | 4.846374e-53 | -8.615850e-47 |
Msa0136380 | Msa0410300 | 0.805904 | 1.065387e-49 | -8.615850e-47 |
Msa0136380 | Msa0428170 | 0.823341 | 1.459310e-53 | -8.615850e-47 |
Msa0136380 | Msa0461590 | 0.818241 | 2.172464e-52 | -8.615850e-47 |
Msa0136380 | Msa0464900 | 0.822765 | 1.987837e-53 | -8.615850e-47 |
Msa0136380 | Msa0473080 | 0.813287 | 2.762728e-51 | -8.615850e-47 |
Msa0136380 | Msa0484840 | 0.814031 | 1.894805e-51 | -8.615850e-47 |
Msa0136380 | Msa0485120 | 0.819570 | 1.083704e-52 | -8.615850e-47 |
Msa0136380 | Msa0542160 | 0.806153 | 9.444489e-50 | -8.615850e-47 |
Msa0136380 | Msa0545060 | 0.819544 | 1.098252e-52 | -8.615850e-47 |
Msa0136380 | Msa0547400 | 0.804260 | 2.352294e-49 | -8.615850e-47 |
Msa0136380 | Msa0549280 | 0.803171 | 3.959634e-49 | -8.615850e-47 |
Msa0136380 | Msa0600610 | 0.806333 | 8.657782e-50 | -8.615850e-47 |
Msa0136380 | Msa0610500 | 0.808307 | 3.303068e-50 | -8.615850e-47 |
Msa0136380 | Msa0618950 | 0.800865 | 1.179473e-48 | -8.615850e-47 |
Msa0136380 | Msa0641140 | 0.806176 | 9.342570e-50 | -8.615850e-47 |
Msa0136380 | Msa0651150 | 0.805623 | 1.220792e-49 | -8.615850e-47 |
Msa0136380 | Msa0652300 | 0.805908 | 1.063784e-49 | -8.615850e-47 |
Msa0136380 | Msa0656580 | 0.803266 | 3.783922e-49 | -8.615850e-47 |
Msa0136380 | Msa0675990 | 0.835481 | 1.636637e-56 | -8.615850e-47 |
Msa0136380 | Msa0726860 | 0.801832 | 7.476027e-49 | -8.615850e-47 |
Msa0136380 | Msa0737800 | 0.816297 | 5.947050e-52 | -8.615850e-47 |
Msa0136380 | Msa0739120 | 0.812103 | 5.017228e-51 | -8.615850e-47 |
Msa0136380 | Msa0750430 | 0.800621 | 1.322719e-48 | -8.615850e-47 |
Msa0136380 | Msa0754720 | -0.807569 | 4.741603e-50 | -8.615850e-47 |
Msa0136380 | Msa0756930 | 0.807228 | 5.601508e-50 | -8.615850e-47 |
Msa0136380 | Msa0773200 | 0.804138 | 2.494115e-49 | -8.615850e-47 |
Msa0136380 | Msa0804680 | 0.806216 | 9.162331e-50 | -8.615850e-47 |
Msa0136380 | Msa0817270 | 0.808992 | 2.358042e-50 | -8.615850e-47 |
Msa0136380 | Msa0820250 | 0.812803 | 3.528022e-51 | -8.615850e-47 |
Msa0136380 | Msa0829620 | 0.804158 | 2.470780e-49 | -8.615850e-47 |
Msa0136380 | Msa0836500 | 0.815254 | 1.015760e-51 | -8.615850e-47 |
Msa0136380 | Msa0844230 | 0.823635 | 1.245337e-53 | -8.615850e-47 |
Msa0136380 | Msa0850710 | 0.806770 | 6.999733e-50 | -8.615850e-47 |
Msa0136380 | Msa0869100 | 0.821681 | 3.547837e-53 | -8.615850e-47 |
Msa0136380 | Msa0881580 | 0.801692 | 7.986197e-49 | -8.615850e-47 |
Msa0136380 | Msa0899350 | 0.818734 | 1.679409e-52 | -8.615850e-47 |
Msa0136380 | Msa0906690 | 0.802275 | 6.059987e-49 | -8.615850e-47 |
Msa0136380 | Msa0908170 | 0.807675 | 4.502386e-50 | -8.615850e-47 |
Msa0136380 | Msa0959010 | 0.800502 | 1.398564e-48 | -8.615850e-47 |
Msa0136380 | Msa0971090 | 0.801639 | 8.187774e-49 | -8.615850e-47 |
Msa0136380 | Msa0980940 | 0.812027 | 5.211201e-51 | -8.615850e-47 |
Msa0136380 | Msa1031770 | 0.828074 | 1.100291e-54 | -8.615850e-47 |
Msa0136380 | Msa1032170 | 0.817362 | 3.430205e-52 | -8.615850e-47 |
Msa0136380 | Msa1040890 | 0.820880 | 5.428849e-53 | -8.615850e-47 |
Msa0136380 | Msa1070840 | 0.803988 | 2.679917e-49 | -8.615850e-47 |
Msa0136380 | Msa1081560 | 0.802852 | 4.608131e-49 | -8.615850e-47 |
Msa0136380 | Msa1093330 | 0.800742 | 1.249658e-48 | -8.615850e-47 |
Msa0136380 | Msa1112390 | 0.808806 | 2.584820e-50 | -8.615850e-47 |
Msa0136380 | Msa1125470 | 0.810846 | 9.407650e-51 | -8.615850e-47 |
Msa0136380 | Msa1125550 | 0.812166 | 4.861320e-51 | -8.615850e-47 |
Msa0136380 | Msa1127130 | 0.815902 | 7.285240e-52 | -8.615850e-47 |
Msa0136380 | Msa1130530 | 0.803866 | 2.841259e-49 | -8.615850e-47 |
Msa0136380 | Msa1133400 | 0.804070 | 2.576902e-49 | -8.615850e-47 |
Msa0136380 | Msa1158660 | 0.805656 | 1.201624e-49 | -8.615850e-47 |
Msa0136380 | Msa1166410 | 0.802691 | 4.975781e-49 | -8.615850e-47 |
Msa0136380 | Msa1174100 | 0.830285 | 3.200349e-55 | -8.615850e-47 |
Msa0136380 | Msa1214880 | 0.811153 | 8.071378e-51 | -8.615850e-47 |
Msa0136380 | Msa1280620 | 0.823040 | 1.715778e-53 | -8.615850e-47 |
Msa0136380 | Msa1300860 | 0.830884 | 2.283831e-55 | -8.615850e-47 |
Msa0136380 | Msa1306390 | 0.814200 | 1.738840e-51 | -8.615850e-47 |
Msa0136380 | Msa1320820 | 0.804405 | 2.194564e-49 | -8.615850e-47 |
Msa0136380 | Msa1331920 | 0.826621 | 2.453961e-54 | -8.615850e-47 |
Msa0136380 | Msa1340040 | -0.810201 | 1.296610e-50 | -8.615850e-47 |
Msa0136380 | Msa1376200 | 0.830344 | 3.095447e-55 | -8.615850e-47 |
Msa0136380 | Msa1386230 | 0.805000 | 1.648566e-49 | -8.615850e-47 |
Msa0136380 | Msa1415940 | 0.806817 | 6.841997e-50 | -8.615850e-47 |
Msa0136380 | Msa1416390 | 0.804478 | 2.118955e-49 | -8.615850e-47 |
Msa0136380 | Msa1425010 | 0.801431 | 9.034220e-49 | -8.615850e-47 |
Msa0136380 | Msa1428370 | 0.806094 | 9.719375e-50 | -8.615850e-47 |
Msa0136380 | Msa1452480 | 0.958712 | 1.192171e-116 | -8.615850e-47 |
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0136380 | MtrunA17_Chr1g0207661 | 91.228 | 855 | 22 | 2 | 1 | 839 | 26 | 843 | 0.0 | 1462 |
Msa0136380 | MtrunA17_Chr2g0298701 | 30.214 | 513 | 234 | 14 | 220 | 722 | 135 | 533 | 1.76e-55 | 204 |
Msa0136380 | MtrunA17_Chr6g0469311 | 85.417 | 48 | 7 | 0 | 76 | 123 | 50 | 97 | 6.75e-18 | 84.3 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0136380 | AT3G19510.1 | 42.152 | 567 | 221 | 15 | 206 | 722 | 158 | 667 | 3.32e-106 | 343 |
Msa0136380 | AT3G19510.2 | 42.152 | 567 | 221 | 15 | 206 | 722 | 158 | 667 | 3.32e-106 | 343 |
Find 241 sgRNAs with CRISPR-Local
Find 482 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
CAGGGATCTATTTCAAAATT+TGG | 0.074634 | 1_3:+68212501 | Msa0136380:CDS |
GAGGATTTGACTCCGGTTTC+TGG | 0.158146 | 1_3:+68213787 | Msa0136380:CDS |
GATGATGTTAAGAACTTTAA+AGG | 0.214262 | 1_3:+68213688 | Msa0136380:CDS |
TTCAATCCTGTAGTAAGATT+TGG | 0.226370 | 1_3:-68211883 | None:intergenic |
TGGTGACCCTGGAGTTATTT+TGG | 0.234456 | 1_3:-68214351 | None:intergenic |
TTTATATGGATGCGGATTAA+AGG | 0.244459 | 1_3:+68215971 | Msa0136380:three_prime_UTR |
AACTTGATTGATGCTTATTC+TGG | 0.261982 | 1_3:+68210669 | Msa0136380:CDS |
TTCTTCTCCTTCTTCATGTT+AGG | 0.264991 | 1_3:-68208935 | None:intergenic |
TCAATCCTGTAGTAAGATTT+GGG | 0.267367 | 1_3:-68211882 | None:intergenic |
CCAAAGCTTGCTTGCTTGCT+TGG | 0.272806 | 1_3:+68209562 | Msa0136380:five_prime_UTR |
CGTGCATCCTTCAAGTGTTT+TGG | 0.276722 | 1_3:-68214459 | None:intergenic |
TATACATACTCCTCCAAATC+TGG | 0.284287 | 1_3:-68208965 | None:intergenic |
AATTTCGCCTTAAGCCAATT+TGG | 0.284533 | 1_3:-68211846 | None:intergenic |
TAGTTGTCAGTTAGCAGTTT+TGG | 0.288683 | 1_3:+68215796 | Msa0136380:three_prime_UTR |
AGAAAGCTTGGCGCAAGAAC+TGG | 0.299690 | 1_3:+68215049 | Msa0136380:CDS |
TAATGTGAGCATCATTTATA+TGG | 0.300014 | 1_3:+68215957 | Msa0136380:three_prime_UTR |
TAATTTGCGTCGCAGAATTT+CGG | 0.302386 | 1_3:-68212473 | None:intergenic |
TCAATCGGTTCAGGATCTTT+AGG | 0.304332 | 1_3:-68210495 | None:intergenic |
GAGCTACTGGATCCACCTTC+TGG | 0.306748 | 1_3:+68210180 | Msa0136380:CDS |
TTGAAGCTTGAGATACTAAA+AGG | 0.311264 | 1_3:-68215881 | None:intergenic |
GACTTACTTCATACAGCTTT+TGG | 0.314803 | 1_3:-68213837 | None:intergenic |
TGGATCTCAAACGATATTCT+TGG | 0.321274 | 1_3:+68215666 | Msa0136380:three_prime_UTR |
CTCAATCTTTGATTGCTTAC+CGG | 0.331704 | 1_3:+68215522 | Msa0136380:CDS |
TCAGAATCAAACAAAGATTC+AGG | 0.338756 | 1_3:-68212550 | None:intergenic |
CCAGCAGCTGTAGCTGCTTC+GGG | 0.350968 | 1_3:-68213313 | None:intergenic |
GGATCTTGCTGCTACAATTA+AGG | 0.352745 | 1_3:+68213621 | Msa0136380:CDS |
TCCAGCAGCTGTAGCTGCTT+CGG | 0.353688 | 1_3:-68213314 | None:intergenic |
GAAGAACGGTAGCCCAGATT+TGG | 0.363105 | 1_3:+68208952 | Msa0136380:five_prime_UTR |
GAATTTGATTTCACTTGAAC+AGG | 0.365153 | 1_3:-68210150 | None:intergenic |
TTGTGTGATGTGTGTTTCCT+TGG | 0.366078 | 1_3:+68209858 | Msa0136380:five_prime_UTR |
GCCCGTTGAATCTCCTTCTC+TGG | 0.369302 | 1_3:-68212445 | None:intergenic |
CTTGAAGGATGCACGGAATC+TGG | 0.377830 | 1_3:+68214467 | Msa0136380:CDS |
CCAGGTACAACTAGCTTTAA+CGG | 0.377993 | 1_3:-68209602 | None:intergenic |
CGGGTATCACCAGCTCTGTT+TGG | 0.380960 | 1_3:+68212762 | Msa0136380:CDS |
ATCATTTGGTGGAAACAATA+AGG | 0.381442 | 1_3:-68215847 | None:intergenic |
TATCGAAGAAGTATGTATTA+AGG | 0.385742 | 1_3:+68210421 | Msa0136380:CDS |
CCAAGCAAGCAAGCAAGCTT+TGG | 0.389596 | 1_3:-68209562 | None:intergenic |
GACAGTTCATCGGTTATAGA+TGG | 0.390879 | 1_3:-68213736 | None:intergenic |
TGAATCTTTGTTTGATTCTG+AGG | 0.392645 | 1_3:+68212552 | Msa0136380:CDS |
TTCGCATCCTCTGGAGCATC+AGG | 0.392731 | 1_3:-68213397 | None:intergenic |
CCTTCAACCTTCGCATCCTC+TGG | 0.393078 | 1_3:-68213406 | None:intergenic |
TTATAGGTTGACAAATGGTT+TGG | 0.393912 | 1_3:+68215175 | Msa0136380:intron |
GAGCTGAAAATAAAGGAGAT+AGG | 0.394447 | 1_3:+68215329 | Msa0136380:CDS |
GAGCAGGAACAGATTGTGTT+TGG | 0.396385 | 1_3:-68210278 | None:intergenic |
CTTAAGCCAATTTGGTAAAA+CGG | 0.396525 | 1_3:-68211838 | None:intergenic |
CTTAGACTTACGAAAGGCTT+TGG | 0.396612 | 1_3:+68209823 | Msa0136380:five_prime_UTR |
TCTTCTCCTTCTTCATGTTA+GGG | 0.404321 | 1_3:-68208934 | None:intergenic |
AGGATTTGACTCCGGTTTCT+GGG | 0.404664 | 1_3:+68213788 | Msa0136380:CDS |
GGACTAATGATTAGTTCAAC+TGG | 0.405013 | 1_3:+68209879 | Msa0136380:five_prime_UTR |
TTAAGCCAATTTGGTAAAAC+GGG | 0.406040 | 1_3:-68211837 | None:intergenic |
CCCGAAGCAGCTACAGCTGC+TGG | 0.412983 | 1_3:+68213313 | Msa0136380:CDS |
GACAGTGGAGCTGAAAATAA+AGG | 0.414026 | 1_3:+68215274 | Msa0136380:CDS |
GTATCTTTAGCACCAGGATT+GGG | 0.417924 | 1_3:-68213559 | None:intergenic |
CAAGTGAAAACAGAATCTTC+TGG | 0.418110 | 1_3:+68210300 | Msa0136380:CDS |
AATCAAAGATTGAGCCGTTA+TGG | 0.420656 | 1_3:-68215513 | None:intergenic |
ACTTGGAGAAGCTGTTGTTC+AGG | 0.422804 | 1_3:+68214517 | Msa0136380:CDS |
TTATTTGAGGCGTTTCCATT+TGG | 0.424610 | 1_3:-68214371 | None:intergenic |
GATTTCACTTGAACAGGAAC+GGG | 0.425167 | 1_3:-68210144 | None:intergenic |
CCAGAGGATGCGAAGGTTGA+AGG | 0.427357 | 1_3:+68213406 | Msa0136380:CDS |
TCTTTAGCAGAGCCAGATCT+TGG | 0.428193 | 1_3:+68213760 | Msa0136380:CDS |
TTTGATTGCTTACCGGTAGC+TGG | 0.429095 | 1_3:+68215529 | Msa0136380:CDS |
CATCATCACTAGTATCACTA+TGG | 0.433662 | 1_3:-68214280 | None:intergenic |
GAAACGAGTGATGCAGTTAC+CGG | 0.433774 | 1_3:+68210243 | Msa0136380:CDS |
ATGCTGATGGGTGTTCCTCT+TGG | 0.436575 | 1_3:-68214408 | None:intergenic |
GATCCCGATGCTCCCAATCC+TGG | 0.436787 | 1_3:+68213547 | Msa0136380:CDS |
TCCTCGGATGATCATCATCT+TGG | 0.437213 | 1_3:+68215646 | Msa0136380:three_prime_UTR |
GTAACAGTATCAATCGGTTC+AGG | 0.439745 | 1_3:-68210504 | None:intergenic |
TTCTCAGTCGTAAAATCGTT+GGG | 0.440583 | 1_3:-68209915 | None:intergenic |
CGGTTATAGATGGCTTCTTA+CGG | 0.441698 | 1_3:-68213726 | None:intergenic |
CTCAGAGTCAGATGTGAAAT+CGG | 0.442930 | 1_3:-68213599 | None:intergenic |
AAATTCTGTGAATGAGCTAC+TGG | 0.443097 | 1_3:+68210167 | Msa0136380:CDS |
CTCCCTTATAGGTTGACAAA+TGG | 0.447598 | 1_3:+68215170 | Msa0136380:intron |
GAAAGCGGAGCTGAAAATAA+AGG | 0.453174 | 1_3:+68215322 | Msa0136380:CDS |
ACTTGAACAGGAACGGGTTG+TGG | 0.457052 | 1_3:-68210138 | None:intergenic |
ATGCTTATTCTGGTGAGGGC+TGG | 0.457759 | 1_3:+68210679 | Msa0136380:CDS |
CTTACGAAAGGCTTTGGTTG+TGG | 0.459145 | 1_3:+68209829 | Msa0136380:five_prime_UTR |
TCACCCACCAAAACACTTGA+AGG | 0.460627 | 1_3:+68214452 | Msa0136380:CDS |
GAAAAGAAATGTTGAAAGGC+TGG | 0.463300 | 1_3:+68213810 | Msa0136380:CDS |
TCATCTTTGCAATCACATCC+TGG | 0.464187 | 1_3:-68212922 | None:intergenic |
TAGTAGCCAACACTTTGGTC+TGG | 0.464284 | 1_3:-68212702 | None:intergenic |
TCATGTAAGGAGGCCAGTCC+AGG | 0.466183 | 1_3:+68215226 | Msa0136380:CDS |
TACAGCTGCTGGAAGTATCT+TGG | 0.467307 | 1_3:+68213324 | Msa0136380:CDS |
ATCTGCCTCTGAGAAATTTG+AGG | 0.471666 | 1_3:+68213462 | Msa0136380:CDS |
AAACCCCAAGCTCGAAGAAA+AGG | 0.472897 | 1_3:+68215449 | Msa0136380:CDS |
TCAATACATGGGTCTTCCTT+CGG | 0.473784 | 1_3:+68213501 | Msa0136380:CDS |
GCACCAGGATTGGGAGCATC+GGG | 0.473958 | 1_3:-68213550 | None:intergenic |
AGTATCTTTAGCACCAGGAT+TGG | 0.476428 | 1_3:-68213560 | None:intergenic |
AAATCCTCTTCACCAAGATC+TGG | 0.477201 | 1_3:-68213772 | None:intergenic |
GCGTTTCCATTTGGTGACCC+TGG | 0.477588 | 1_3:-68214362 | None:intergenic |
GCGACAGAGCTCTGCGGTCG+AGG | 0.478343 | 1_3:+68210457 | Msa0136380:CDS |
ATAAGGTCTCCATAACTAAA+CGG | 0.482679 | 1_3:-68215830 | None:intergenic |
CTTCTCAGTCGTAAAATCGT+TGG | 0.484570 | 1_3:-68209916 | None:intergenic |
GTGAGGGCTGGAAAGGATAC+AGG | 0.485234 | 1_3:+68210691 | Msa0136380:CDS |
ATGTATTGATCCTCATGGCC+TGG | 0.487322 | 1_3:-68213487 | None:intergenic |
GCAGACATCTGAAGCAGGGC+TGG | 0.488443 | 1_3:+68215489 | Msa0136380:CDS |
ATTGATGCTTATTCTGGTGA+GGG | 0.490730 | 1_3:+68210675 | Msa0136380:CDS |
AGCACCAGGATTGGGAGCAT+CGG | 0.491856 | 1_3:-68213551 | None:intergenic |
ATGAAATGAAGACAAAAGAA+AGG | 0.492286 | 1_3:+68210541 | Msa0136380:CDS |
GTTCCTCTTGGCAGTACGGC+GGG | 0.492474 | 1_3:-68214396 | None:intergenic |
GAGCCGCAGACATCTGAAGC+AGG | 0.495421 | 1_3:+68215484 | Msa0136380:CDS |
AGGAGATAATGCTTCGCAGC+AGG | 0.495905 | 1_3:+68215294 | Msa0136380:CDS |
AAGTATGTATTAAGGTCGTT+AGG | 0.498676 | 1_3:+68210429 | Msa0136380:CDS |
GATTGATGCTTATTCTGGTG+AGG | 0.499509 | 1_3:+68210674 | Msa0136380:CDS |
TTATTGCTTGTGCCAGCTAC+CGG | 0.500696 | 1_3:-68215541 | None:intergenic |
AAGTATCTTGGATCACAACC+TGG | 0.500741 | 1_3:+68213336 | Msa0136380:CDS |
AGCTGAAAATAAAGGAGATA+GGG | 0.501616 | 1_3:+68215330 | Msa0136380:CDS |
GACAGAGAACAAAGTGTGCT+TGG | 0.502185 | 1_3:+68209988 | Msa0136380:CDS |
ATAACTCCAGGGTCACCAAA+TGG | 0.504477 | 1_3:+68214356 | Msa0136380:CDS |
GGATCTTCATACAATAAACT+TGG | 0.506409 | 1_3:+68214500 | Msa0136380:CDS |
CCGTTAAAGCTAGTTGTACC+TGG | 0.507504 | 1_3:+68209602 | Msa0136380:five_prime_UTR |
GCCAGAGAAGGAGATTCAAC+GGG | 0.508450 | 1_3:+68212444 | Msa0136380:CDS |
TACTAGTGATGATGAAGATT+GGG | 0.508913 | 1_3:+68214289 | Msa0136380:CDS |
GGGTGTTCCTCTTGGCAGTA+CGG | 0.509060 | 1_3:-68214400 | None:intergenic |
TCTGAGAAATTTGAGGATCC+AGG | 0.510014 | 1_3:+68213469 | Msa0136380:CDS |
GTTCCGACATTCATCATGTA+AGG | 0.513678 | 1_3:+68215213 | Msa0136380:CDS |
GAAAGCTTGGCGCAAGAACT+GGG | 0.514904 | 1_3:+68215050 | Msa0136380:CDS |
ACTGCATCTCTCATTTCGCC+AGG | 0.515178 | 1_3:-68210093 | None:intergenic |
GCGTCGCAGAATTTCGGACT+TGG | 0.515667 | 1_3:-68212467 | None:intergenic |
GAGAGAAAGAGAGGGATGAG+TGG | 0.516963 | 1_3:-68209046 | None:intergenic |
ATTATTAGTAGCCAACACTT+TGG | 0.517226 | 1_3:-68212707 | None:intergenic |
GAACGGTAGCCCAGATTTGG+AGG | 0.518288 | 1_3:+68208955 | Msa0136380:five_prime_UTR |
ATCTCAAACGATATTCTTGG+AGG | 0.518724 | 1_3:+68215669 | Msa0136380:three_prime_UTR |
ATACTAGTGATGATGAAGAT+TGG | 0.521341 | 1_3:+68214288 | Msa0136380:CDS |
CTGCGGCTTACAGTTCCACC+TGG | 0.522100 | 1_3:+68212880 | Msa0136380:intron |
GGTTTGGCAATTCTCGTTGG+AGG | 0.524613 | 1_3:+68215191 | Msa0136380:CDS |
TACAGTTCCACCTGGCGATG+AGG | 0.529326 | 1_3:+68212888 | Msa0136380:intron |
CATAACCAACCCTCATCGCC+AGG | 0.530946 | 1_3:-68212898 | None:intergenic |
AATCTTGCTACCTTACGAAA+AGG | 0.533200 | 1_3:-68215597 | None:intergenic |
TGATTTCACTTGAACAGGAA+CGG | 0.534261 | 1_3:-68210145 | None:intergenic |
AGTAATATCTCAGTTGAGCT+CGG | 0.534961 | 1_3:-68210623 | None:intergenic |
CGCAAGCCCTAACATGAAGA+AGG | 0.535185 | 1_3:+68208928 | Msa0136380:five_prime_UTR |
CTGGGAAAAGAAATGTTGAA+AGG | 0.535766 | 1_3:+68213806 | Msa0136380:CDS |
TGGCATACACGGGATAAGCT+TGG | 0.538222 | 1_3:-68211932 | None:intergenic |
AATGGTTTGGCAATTCTCGT+TGG | 0.540198 | 1_3:+68215188 | Msa0136380:CDS |
TTGGATTCGTTATGTGCTGA+AGG | 0.540214 | 1_3:+68212520 | Msa0136380:CDS |
GTGATGGTGCTTGTGACCGC+GGG | 0.542507 | 1_3:+68212743 | Msa0136380:CDS |
AGTACGGCGGGAATTATTTG+AGG | 0.542860 | 1_3:-68214384 | None:intergenic |
ACGGACCGCAAAAGAAAGCT+TGG | 0.543668 | 1_3:+68215037 | Msa0136380:CDS |
ATTCGTTATGTGCTGAAGGA+AGG | 0.544325 | 1_3:+68212524 | Msa0136380:CDS |
AATTCTGTTATTCAACTGCC+TGG | 0.546096 | 1_3:+68210075 | Msa0136380:CDS |
GAATCTTTGTTTGATTCTGA+GGG | 0.547335 | 1_3:+68212553 | Msa0136380:CDS |
AGGTAGTAATGCTTCACAGC+AGG | 0.547657 | 1_3:+68215246 | Msa0136380:CDS |
GAACAACTGATGCGCTAGCT+CGG | 0.550645 | 1_3:-68211910 | None:intergenic |
AGGCCATGAGGATCAATACA+TGG | 0.550655 | 1_3:+68213489 | Msa0136380:CDS |
TATTCTGGTGAGGGCTGGAA+AGG | 0.551866 | 1_3:+68210684 | Msa0136380:CDS |
AGAGCCAGATCTTGGTGAAG+AGG | 0.552428 | 1_3:+68213768 | Msa0136380:CDS |
TTCGCAACATCTCCAGAAGG+TGG | 0.552717 | 1_3:-68210192 | None:intergenic |
TTGTGGTTGTTCTTCAACAA+GGG | 0.552863 | 1_3:-68210121 | None:intergenic |
ATACATACTCCTCCAAATCT+GGG | 0.553149 | 1_3:-68208964 | None:intergenic |
ACAGTTCCACCTGGCGATGA+GGG | 0.553392 | 1_3:+68212889 | Msa0136380:intron |
GAGCATCATTTATATGGATG+CGG | 0.555201 | 1_3:+68215963 | Msa0136380:three_prime_UTR |
TTCCACCTGGCGATGAGGGT+TGG | 0.555753 | 1_3:+68212893 | Msa0136380:CDS |
GTCAAATGCGAGTGAAACAC+GGG | 0.555777 | 1_3:+68210379 | Msa0136380:CDS |
AGGTTCGATCTAACGTGAAA+CGG | 0.556565 | 1_3:-68209072 | None:intergenic |
TGTTTGGTCTTCAACAAGGC+CGG | 0.559730 | 1_3:-68210262 | None:intergenic |
AGCCAGAGAAGGAGATTCAA+CGG | 0.560164 | 1_3:+68212443 | Msa0136380:CDS |
GGAGCATCAACTAGTTTCCC+AGG | 0.560671 | 1_3:+68215405 | Msa0136380:CDS |
TTCATCTTCATATTCCTCGC+CGG | 0.562131 | 1_3:+68209098 | Msa0136380:five_prime_UTR |
AGATGTGACATCATCTTGTC+CGG | 0.564545 | 1_3:-68213656 | None:intergenic |
TCTTCAGTATCTTTAGCACC+AGG | 0.564626 | 1_3:-68213565 | None:intergenic |
AACGGTGAGAGAGAAAGAGA+GGG | 0.567501 | 1_3:-68209054 | None:intergenic |
AGCACCCCAAATCTTACTAC+AGG | 0.569016 | 1_3:+68211877 | Msa0136380:CDS |
TGCTGTGAAGCATTACTACC+TGG | 0.569191 | 1_3:-68215244 | None:intergenic |
CATCTTTGCAATCACATCCT+GGG | 0.569916 | 1_3:-68212921 | None:intergenic |
ACATCAGTAACAGTATCAAT+CGG | 0.571296 | 1_3:-68210510 | None:intergenic |
CTGACCGCCAAAATAACTCC+AGG | 0.571543 | 1_3:+68214344 | Msa0136380:CDS |
TCTTCATATTCCTCGCCGGA+CGG | 0.572009 | 1_3:+68209102 | Msa0136380:five_prime_UTR |
ATTAGTTCTCAAAACGAACC+TGG | 0.572921 | 1_3:+68210219 | Msa0136380:CDS |
AAATGAAGACAAAAGAAAGG+AGG | 0.573526 | 1_3:+68210544 | Msa0136380:CDS |
GACCCATGTATTGATCCTCA+TGG | 0.576189 | 1_3:-68213492 | None:intergenic |
TCGCAGCAGGCCAGTGAAAG+CGG | 0.580172 | 1_3:+68215307 | Msa0136380:CDS |
TCTACTTGGAGTAGCAGTGT+CGG | 0.582959 | 1_3:-68214312 | None:intergenic |
AAACGGTGAGAGAGAAAGAG+AGG | 0.583261 | 1_3:-68209055 | None:intergenic |
TGGTGAAGAGGATTTGACTC+CGG | 0.583636 | 1_3:+68213780 | Msa0136380:CDS |
TGATGTCACATCTGCACCGT+TGG | 0.585319 | 1_3:+68213666 | Msa0136380:CDS |
TGAAGCATTACTACCTGGAC+TGG | 0.585531 | 1_3:-68215239 | None:intergenic |
GGTCAAATGCGAGTGAAACA+CGG | 0.586994 | 1_3:+68210378 | Msa0136380:CDS |
TGTTCCTCTTGGCAGTACGG+CGG | 0.587710 | 1_3:-68214397 | None:intergenic |
ATGGAGGATCCAAACAGAGC+TGG | 0.587853 | 1_3:-68212771 | None:intergenic |
TTGAACTAATCATTAGTCCA+AGG | 0.588259 | 1_3:-68209875 | None:intergenic |
GGCGAGGAATATGAAGATGA+AGG | 0.590383 | 1_3:-68209096 | None:intergenic |
ATTGTGTTTGGTCTTCAACA+AGG | 0.590483 | 1_3:-68210266 | None:intergenic |
TGTGATGGTGCTTGTGACCG+CGG | 0.591361 | 1_3:+68212742 | Msa0136380:CDS |
GTTGTGGTTGTTCTTCAACA+AGG | 0.591435 | 1_3:-68210122 | None:intergenic |
TCTTCCTTCGGAAGATTCAG+AGG | 0.592723 | 1_3:+68213513 | Msa0136380:CDS |
CAATCCTGTAGTAAGATTTG+GGG | 0.595296 | 1_3:-68211881 | None:intergenic |
AAGAAAATCAATATCCAGAA+CGG | 0.595382 | 1_3:+68215018 | Msa0136380:CDS |
TGCTAAAGATGACAGTTCAT+CGG | 0.595530 | 1_3:-68213746 | None:intergenic |
ACTGCATCACTCGTTTCACC+AGG | 0.596362 | 1_3:-68210237 | None:intergenic |
GTGACATAGTAATCTCCGTC+CGG | 0.597495 | 1_3:-68209117 | None:intergenic |
TTACTGTCTTCAGTTAACAA+TGG | 0.602560 | 1_3:-68212790 | None:intergenic |
CTGTCTTCAGTTAACAATGG+AGG | 0.604628 | 1_3:-68212787 | None:intergenic |
TCGCAGCAAGCCACTGACAG+CGG | 0.604697 | 1_3:+68215361 | Msa0136380:CDS |
AGCCGCAGACATCTGAAGCA+GGG | 0.606461 | 1_3:+68215485 | Msa0136380:CDS |
GTAGTTCTTAGACTTACGAA+AGG | 0.610188 | 1_3:+68209817 | Msa0136380:intron |
AGGTGAAAACAAAGGAGAGA+CGG | 0.611195 | 1_3:+68215384 | Msa0136380:CDS |
CAAAACACTTGAAGGATGCA+CGG | 0.611620 | 1_3:+68214460 | Msa0136380:CDS |
ACGAAAGGCTTTGGTTGTGG+TGG | 0.611881 | 1_3:+68209832 | Msa0136380:five_prime_UTR |
TCGTGTGAGATTGAGATCCT+CGG | 0.612290 | 1_3:+68215630 | Msa0136380:three_prime_UTR |
AGGAATATGAAGATGAAGGA+AGG | 0.612986 | 1_3:-68209092 | None:intergenic |
TTGTTAATAGTGATGCGACA+TGG | 0.614031 | 1_3:-68215921 | None:intergenic |
AATGATATAATTCTCTGTGA+TGG | 0.615057 | 1_3:+68212727 | Msa0136380:CDS |
AATCATCTGAAGGAAGTCCC+AGG | 0.615967 | 1_3:-68213354 | None:intergenic |
CCTCCTTACATGATGAATGT+CGG | 0.617098 | 1_3:-68215216 | None:intergenic |
TCATCCTCTGAATCTTCCGA+AGG | 0.620563 | 1_3:-68213517 | None:intergenic |
GGATCTCAATCTCACACGAT+AGG | 0.621035 | 1_3:-68215626 | None:intergenic |
ATTAAGGATAACATGTCCAC+CGG | 0.621242 | 1_3:+68213637 | Msa0136380:CDS |
CGATTTCACATCTGACTCTG+AGG | 0.622480 | 1_3:+68213600 | Msa0136380:CDS |
GAAGCAGGGCTGGTCCATAA+CGG | 0.623774 | 1_3:+68215499 | Msa0136380:CDS |
CTAGTTTCCCAGGAGACAAG+TGG | 0.625230 | 1_3:+68215415 | Msa0136380:CDS |
ACAACTAGCTTTAACGGTAA+CGG | 0.625737 | 1_3:-68209596 | None:intergenic |
TGAGGGAGAGATTGATAGCG+AGG | 0.625849 | 1_3:+68212570 | Msa0136380:CDS |
AAAATGCCAGACCAAAGTGT+TGG | 0.625899 | 1_3:+68212696 | Msa0136380:CDS |
CAGCAAGCCACTGACAGCGG+AGG | 0.628403 | 1_3:+68215364 | Msa0136380:CDS |
ATAGTAATCTCCGTCCGGCG+AGG | 0.629589 | 1_3:-68209112 | None:intergenic |
TCATCGTCAGAATCATCTGA+AGG | 0.631384 | 1_3:-68213364 | None:intergenic |
GCTGAAAATAAAGGAGATAG+GGG | 0.633536 | 1_3:+68215331 | Msa0136380:CDS |
TGATGCTCCAGAGGATGCGA+AGG | 0.634645 | 1_3:+68213399 | Msa0136380:CDS |
TCACAGCAGGCCAATGACAG+TGG | 0.635719 | 1_3:+68215259 | Msa0136380:CDS |
ACAAAGTGTGCTTGGTACTG+TGG | 0.637548 | 1_3:+68209996 | Msa0136380:CDS |
TTATAATCCTGATGCTCCAG+AGG | 0.638161 | 1_3:+68213390 | Msa0136380:CDS |
TGTGACATCATCTTGTCCGG+TGG | 0.646990 | 1_3:-68213653 | None:intergenic |
AAGTTCTTAACATCATCCAA+CGG | 0.647331 | 1_3:-68213682 | None:intergenic |
CCGACATTCATCATGTAAGG+AGG | 0.650409 | 1_3:+68215216 | Msa0136380:CDS |
TCCAAGATGATGATCATCCG+AGG | 0.651348 | 1_3:-68215647 | None:intergenic |
GGCCATGAGGATCAATACAT+GGG | 0.661032 | 1_3:+68213490 | Msa0136380:CDS |
GATGAGGGTTGGTTATGCCC+AGG | 0.661408 | 1_3:+68212904 | Msa0136380:CDS |
AGTATCTTGGATCACAACCT+GGG | 0.671806 | 1_3:+68213337 | Msa0136380:CDS |
ATTTGAGGATCCAGGCCATG+AGG | 0.675316 | 1_3:+68213477 | Msa0136380:CDS |
GAGGATGCGAAGGTTGAAGG+AGG | 0.677573 | 1_3:+68213409 | Msa0136380:CDS |
TGACCGCCAAAATAACTCCA+GGG | 0.677588 | 1_3:+68214345 | Msa0136380:CDS |
AGCCCTGCTTCAGATGTCTG+CGG | 0.678843 | 1_3:-68215487 | None:intergenic |
ATTCCCGCCGTACTGCCAAG+AGG | 0.692868 | 1_3:+68214393 | Msa0136380:CDS |
TGGATCCTCAAATTTCTCAG+AGG | 0.694886 | 1_3:-68213467 | None:intergenic |
AACAGAGCTGGTGATACCCG+CGG | 0.701915 | 1_3:-68212759 | None:intergenic |
GACAGCGGAGGTGAAAACAA+AGG | 0.703274 | 1_3:+68215376 | Msa0136380:CDS |
AACATGAAGAAGGAGAAGAA+CGG | 0.707692 | 1_3:+68208938 | Msa0136380:five_prime_UTR |
AACCAACCCTCATCGCCAGG+TGG | 0.710395 | 1_3:-68212895 | None:intergenic |
ACTAGCTTTAACGGTAACGG+CGG | 0.716035 | 1_3:-68209593 | None:intergenic |
GAAGCAGCGACAGAGCTCTG+CGG | 0.763478 | 1_3:+68210451 | Msa0136380:CDS |
TCAAATGCGAGTGAAACACG+GGG | 0.791339 | 1_3:+68210380 | Msa0136380:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!!! | ATTAAACTTTTTTTATTCTA+GGG | - | chr1_3:68211057-68211076 | None:intergenic | 10.0% |
!!! | ATGTATTTTTTTTTTTTTTG+TGG | + | chr1_3:68212364-68212383 | Msa0136380:intron | 10.0% |
!! | CATTAAAGAATAAAATATAA+AGG | - | chr1_3:68212608-68212627 | None:intergenic | 10.0% |
!! | TTAACATTAACACATTATAT+TGG | - | chr1_3:68209756-68209775 | None:intergenic | 15.0% |
!!! | TTAAACTTTTTTTATTCTAG+GGG | - | chr1_3:68211056-68211075 | None:intergenic | 15.0% |
!!! | CATTAAACTTTTTTTATTCT+AGG | - | chr1_3:68211058-68211077 | None:intergenic | 15.0% |
!!! | TTCTTTTTACTCTAATATTT+TGG | + | chr1_3:68212074-68212093 | Msa0136380:intron | 15.0% |
!!! | TATTTTTTTTTTTTTTGTGG+TGG | + | chr1_3:68212367-68212386 | Msa0136380:intron | 15.0% |
!!! | TATCCAATTTTTCAAAATTT+GGG | + | chr1_3:68212631-68212650 | Msa0136380:intron | 15.0% |
!!! | ATTTATGTATTTTTTTTCTG+CGG | + | chr1_3:68212863-68212882 | Msa0136380:intron | 15.0% |
!! | ACAAATAATGTTATAAAAAC+AGG | + | chr1_3:68213153-68213172 | Msa0136380:intron | 15.0% |
!! | AATATCTTTAATAACTTATG+AGG | + | chr1_3:68213994-68214013 | Msa0136380:intron | 15.0% |
!! | AATAAAATGAAGAAAAAGAA+AGG | + | chr1_3:68215559-68215578 | Msa0136380:CDS | 15.0% |
!! | ATAAAATGAAGAAAAAGAAA+GGG | + | chr1_3:68215560-68215579 | Msa0136380:CDS | 15.0% |
!! | AAAAAGTTTAATGTGATCTT+AGG | + | chr1_3:68211065-68211084 | Msa0136380:intron | 20.0% |
!!! | ACAAACACTTTTATCTTATA+CGG | + | chr1_3:68211247-68211266 | Msa0136380:intron | 20.0% |
!! | AAGTTTCTCATGTTTATATT+TGG | - | chr1_3:68211565-68211584 | None:intergenic | 20.0% |
!!! | GTATCCAATTTTTCAAAATT+TGG | + | chr1_3:68212630-68212649 | Msa0136380:intron | 20.0% |
!!! | TTCTAAGAAAGAAATCAAAT+AGG | - | chr1_3:68213032-68213051 | None:intergenic | 20.0% |
!! | TATTAGAGTTCTTTCATATT+TGG | - | chr1_3:68214099-68214118 | None:intergenic | 20.0% |
!! | ATATACACTTGAGTATATTT+AGG | - | chr1_3:68214634-68214653 | None:intergenic | 20.0% |
!! | TTATTCTTATAGTTTACTTG+AGG | + | chr1_3:68214704-68214723 | Msa0136380:intron | 20.0% |
!!! | TTTTTTTTTCCGTTTAGTTA+TGG | + | chr1_3:68215821-68215840 | Msa0136380:three_prime_UTR | 20.0% |
!! | AAAAAAAAAACATCATTTGG+TGG | - | chr1_3:68215861-68215880 | None:intergenic | 20.0% |
!! | AGGAAAAAAAAAACATCATT+TGG | - | chr1_3:68215864-68215883 | None:intergenic | 20.0% |
! | AAGAAACGGTAAATTTGAAA+GGG | - | chr1_3:68209195-68209214 | None:intergenic | 25.0% |
! | AAAGAAACGGTAAATTTGAA+AGG | - | chr1_3:68209196-68209215 | None:intergenic | 25.0% |
!! | TTTCTCTATGTTTCTGTTAT+GGG | + | chr1_3:68209308-68209327 | Msa0136380:intron | 25.0% |
! | ATGCAAGTTGTAAACAAAAT+GGG | + | chr1_3:68209348-68209367 | Msa0136380:intron | 25.0% |
! | ATAATTCAGACATGTAACAA+AGG | - | chr1_3:68209482-68209501 | None:intergenic | 25.0% |
! | TTTACATTGTCATCTTTGTT+GGG | + | chr1_3:68209637-68209656 | Msa0136380:intron | 25.0% |
! | TAACACATTATATTGGAGTT+TGG | - | chr1_3:68209749-68209768 | None:intergenic | 25.0% |
! | AGAAAGAAAGTCTAAAAACT+TGG | + | chr1_3:68210356-68210375 | Msa0136380:CDS | 25.0% |
! | GAAAGAAAGTCTAAAAACTT+GGG | + | chr1_3:68210357-68210376 | Msa0136380:CDS | 25.0% |
!! | TATCGAAGAAGTATGTATTA+AGG | + | chr1_3:68210421-68210440 | Msa0136380:CDS | 25.0% |
! | ATGAAATGAAGACAAAAGAA+AGG | + | chr1_3:68210541-68210560 | Msa0136380:CDS | 25.0% |
! | AAGAAAAAGACAAGAAAAGA+GGG | + | chr1_3:68210576-68210595 | Msa0136380:CDS | 25.0% |
!!! | GTTAGCTTGTAATCTATATT+TGG | + | chr1_3:68210745-68210764 | Msa0136380:intron | 25.0% |
! | TGTTTCAATTTCCACATTAA+AGG | + | chr1_3:68210826-68210845 | Msa0136380:intron | 25.0% |
! | ATTGTGATTGTTATCTTGTT+TGG | + | chr1_3:68210965-68210984 | Msa0136380:intron | 25.0% |
!!! | TTGTTTGGAGTCATATTTTT+TGG | + | chr1_3:68210980-68210999 | Msa0136380:intron | 25.0% |
! | TTCTCATAAACAATCATCTA+GGG | - | chr1_3:68211216-68211235 | None:intergenic | 25.0% |
! | ATTCTCATAAACAATCATCT+AGG | - | chr1_3:68211217-68211236 | None:intergenic | 25.0% |
!! | CAAACACTTTTATCTTATAC+GGG | + | chr1_3:68211248-68211267 | Msa0136380:intron | 25.0% |
!! | TTTAAAAAGTGTACTTGTGT+CGG | - | chr1_3:68211355-68211374 | None:intergenic | 25.0% |
! | TCTCATGTTTATATTTGGAA+AGG | - | chr1_3:68211560-68211579 | None:intergenic | 25.0% |
!! | TCTTTAATGATCCATTTTCT+TGG | + | chr1_3:68211757-68211776 | Msa0136380:intron | 25.0% |
!! | CTTTAATGATCCATTTTCTT+GGG | + | chr1_3:68211758-68211777 | Msa0136380:intron | 25.0% |
! | TGCAGTATAAAAACTATACA+TGG | - | chr1_3:68212121-68212140 | None:intergenic | 25.0% |
! | AAAATGACAATAAAACAGAG+GGG | - | chr1_3:68212196-68212215 | None:intergenic | 25.0% |
! | GAAAATGACAATAAAACAGA+GGG | - | chr1_3:68212197-68212216 | None:intergenic | 25.0% |
! | TGAAAATGACAATAAAACAG+AGG | - | chr1_3:68212198-68212217 | None:intergenic | 25.0% |
!! | CTGATGAATTTTGTGATATT+TGG | + | chr1_3:68212237-68212256 | Msa0136380:intron | 25.0% |
!! | ATTGTGAAAATTTTGCAGTA+TGG | + | chr1_3:68212411-68212430 | Msa0136380:intron | 25.0% |
!!! | ACTCCCAAATTTTGAAAAAT+TGG | - | chr1_3:68212637-68212656 | None:intergenic | 25.0% |
! | AATGATATAATTCTCTGTGA+TGG | + | chr1_3:68212727-68212746 | Msa0136380:CDS | 25.0% |
!!! | ATGATAAATTACTTTGAAGC+TGG | - | chr1_3:68212845-68212864 | None:intergenic | 25.0% |
!! | GTTAGTTGGAAAACTTTTTA+AGG | + | chr1_3:68213006-68213025 | Msa0136380:intron | 25.0% |
!! | ATTTAAAACTGAACCTTGTT+TGG | + | chr1_3:68213073-68213092 | Msa0136380:intron | 25.0% |
! | GATGATGTTAAGAACTTTAA+AGG | + | chr1_3:68213688-68213707 | Msa0136380:CDS | 25.0% |
! | TAGACCTCATATCAAAAAAA+GGG | - | chr1_3:68213862-68213881 | None:intergenic | 25.0% |
! | TTAGACCTCATATCAAAAAA+AGG | - | chr1_3:68213863-68213882 | None:intergenic | 25.0% |
! | TAACGAAATAGTAAAGAAAC+AGG | - | chr1_3:68214066-68214085 | None:intergenic | 25.0% |
! | GAGGAAAAGAACAAAAAAAA+AGG | - | chr1_3:68214217-68214236 | None:intergenic | 25.0% |
!! | ATTTTCAACTTTATGCTGAT+GGG | - | chr1_3:68214423-68214442 | None:intergenic | 25.0% |
!! | TATTTTCAACTTTATGCTGA+TGG | - | chr1_3:68214424-68214443 | None:intergenic | 25.0% |
! | TAGTATGCAAATTAGAAACT+TGG | - | chr1_3:68214576-68214595 | None:intergenic | 25.0% |
!!! | AATTGCAGAAGTGATTTTTT+GGG | + | chr1_3:68214663-68214682 | Msa0136380:intron | 25.0% |
!! | TTTTTACTGCACATAATAAC+TGG | + | chr1_3:68214796-68214815 | Msa0136380:intron | 25.0% |
! | AAGAAAATCAATATCCAGAA+CGG | + | chr1_3:68215018-68215037 | Msa0136380:CDS | 25.0% |
!!! | CTTTTAAAAAGTAGCTATTC+AGG | + | chr1_3:68215720-68215739 | Msa0136380:three_prime_UTR | 25.0% |
!!! | ATTTTTAAGTGTTTGCATGA+GGG | - | chr1_3:68215777-68215796 | None:intergenic | 25.0% |
!!! | TATTTTTAAGTGTTTGCATG+AGG | - | chr1_3:68215778-68215797 | None:intergenic | 25.0% |
! | TAATGTGAGCATCATTTATA+TGG | + | chr1_3:68215957-68215976 | Msa0136380:three_prime_UTR | 25.0% |
AATCTATGGAACGAAAGAAA+CGG | - | chr1_3:68209209-68209228 | None:intergenic | 30.0% | |
! | GTTTCTCTATGTTTCTGTTA+TGG | + | chr1_3:68209307-68209326 | Msa0136380:intron | 30.0% |
! | TTCTCTATGTTTCTGTTATG+GGG | + | chr1_3:68209309-68209328 | Msa0136380:intron | 30.0% |
CATGCAAGTTGTAAACAAAA+TGG | + | chr1_3:68209347-68209366 | Msa0136380:intron | 30.0% | |
! | ACTACTTGATAATTAGCTTG+CGG | + | chr1_3:68209382-68209401 | Msa0136380:intron | 30.0% |
!! | TCTTTTGCTTACTTTGTTGT+TGG | + | chr1_3:68209501-68209520 | Msa0136380:intron | 30.0% |
CTTTACATTGTCATCTTTGT+TGG | + | chr1_3:68209636-68209655 | Msa0136380:intron | 30.0% | |
TTGAACTAATCATTAGTCCA+AGG | - | chr1_3:68209878-68209897 | None:intergenic | 30.0% | |
TCTGAAAAAACAGTTCAGAT+TGG | + | chr1_3:68209952-68209971 | Msa0136380:CDS | 30.0% | |
CTGAAAAAACAGTTCAGATT+GGG | + | chr1_3:68209953-68209972 | Msa0136380:CDS | 30.0% | |
! | TTTTTCATCGATAGCAGAAT+CGG | - | chr1_3:68210025-68210044 | None:intergenic | 30.0% |
! | GAATTTGATTTCACTTGAAC+AGG | - | chr1_3:68210153-68210172 | None:intergenic | 30.0% |
AAGTATGTATTAAGGTCGTT+AGG | + | chr1_3:68210429-68210448 | Msa0136380:CDS | 30.0% | |
ACATCAGTAACAGTATCAAT+CGG | - | chr1_3:68210513-68210532 | None:intergenic | 30.0% | |
AAATGAAGACAAAAGAAAGG+AGG | + | chr1_3:68210544-68210563 | Msa0136380:CDS | 30.0% | |
GAAGAAAAAGACAAGAAAAG+AGG | + | chr1_3:68210575-68210594 | Msa0136380:CDS | 30.0% | |
! | AGTTTTGCTCATAGCTTATT+CGG | - | chr1_3:68210653-68210672 | None:intergenic | 30.0% |
AACTTGATTGATGCTTATTC+TGG | + | chr1_3:68210669-68210688 | Msa0136380:CDS | 30.0% | |
CTAACGAAATCACAAAGTAA+TGG | - | chr1_3:68210730-68210749 | None:intergenic | 30.0% | |
GCTAAGGTCAAAAATAAATC+AGG | - | chr1_3:68210779-68210798 | None:intergenic | 30.0% | |
!! | TATTTTTGACCTTAGCTCAT+TGG | + | chr1_3:68210783-68210802 | Msa0136380:intron | 30.0% |
! | ATTTTTGACCTTAGCTCATT+GGG | + | chr1_3:68210784-68210803 | Msa0136380:intron | 30.0% |
TGATGTTAACTCCTTTAATG+TGG | - | chr1_3:68210840-68210859 | None:intergenic | 30.0% | |
GGAGTTAACATCAATTCTAT+TGG | + | chr1_3:68210847-68210866 | Msa0136380:intron | 30.0% | |
GCAATCATTCAACTTGTAAA+AGG | - | chr1_3:68210919-68210938 | None:intergenic | 30.0% | |
GTGATCTTAGGTATTTGAAT+TGG | + | chr1_3:68211077-68211096 | Msa0136380:intron | 30.0% | |
! | GGATACTATACTGGTTATTT+AGG | - | chr1_3:68211194-68211213 | None:intergenic | 30.0% |
TCTCATAAACAATCATCTAG+GGG | - | chr1_3:68211215-68211234 | None:intergenic | 30.0% | |
!!! | TGTGCTTTTTCAAATCACTT+TGG | + | chr1_3:68211271-68211290 | Msa0136380:intron | 30.0% |
ATATGTAAGCTAGCACAATT+AGG | + | chr1_3:68211418-68211437 | Msa0136380:intron | 30.0% | |
! | TTCAAATGAACCTTGCTATA+TGG | - | chr1_3:68211489-68211508 | None:intergenic | 30.0% |
AGTAAAGGTAAATCCAAACA+TGG | - | chr1_3:68211652-68211671 | None:intergenic | 30.0% | |
ATTTACCTTTACTGACCATT+TGG | + | chr1_3:68211659-68211678 | Msa0136380:intron | 30.0% | |
AAAATCCAAATGGTCAGTAA+AGG | - | chr1_3:68211667-68211686 | None:intergenic | 30.0% | |
CAGCTAAGATAAAATCCAAA+TGG | - | chr1_3:68211677-68211696 | None:intergenic | 30.0% | |
! | TACAAAATTGCATTTGGTGA+TGG | - | chr1_3:68211723-68211742 | None:intergenic | 30.0% |
! | ATCACCAAATGCAATTTTGT+AGG | + | chr1_3:68211722-68211741 | Msa0136380:intron | 30.0% |
GAATCCTACAAAATTGCATT+TGG | - | chr1_3:68211729-68211748 | None:intergenic | 30.0% | |
TTAAATGGATCCCAAGAAAA+TGG | - | chr1_3:68211771-68211790 | None:intergenic | 30.0% | |
TTAAGCCAATTTGGTAAAAC+GGG | - | chr1_3:68211840-68211859 | None:intergenic | 30.0% | |
CTTAAGCCAATTTGGTAAAA+CGG | - | chr1_3:68211841-68211860 | None:intergenic | 30.0% | |
TCAATCCTGTAGTAAGATTT+GGG | - | chr1_3:68211885-68211904 | None:intergenic | 30.0% | |
TTCAATCCTGTAGTAAGATT+TGG | - | chr1_3:68211886-68211905 | None:intergenic | 30.0% | |
CAGGGATCTATTTCAAAATT+TGG | + | chr1_3:68212501-68212520 | Msa0136380:CDS | 30.0% | |
TCAGAATCAAACAAAGATTC+AGG | - | chr1_3:68212553-68212572 | None:intergenic | 30.0% | |
! | TGAATCTTTGTTTGATTCTG+AGG | + | chr1_3:68212552-68212571 | Msa0136380:CDS | 30.0% |
! | GAATCTTTGTTTGATTCTGA+GGG | + | chr1_3:68212553-68212572 | Msa0136380:CDS | 30.0% |
ATTATTAGTAGCCAACACTT+TGG | - | chr1_3:68212710-68212729 | None:intergenic | 30.0% | |
TTACTGTCTTCAGTTAACAA+TGG | - | chr1_3:68212793-68212812 | None:intergenic | 30.0% | |
TAACTGAAGACAGTAATATC+TGG | + | chr1_3:68212797-68212816 | Msa0136380:intron | 30.0% | |
!! | AACTTGTTAACGACTTGTTA+GGG | + | chr1_3:68212953-68212972 | Msa0136380:intron | 30.0% |
CAAAACAAGTAAACCAAACA+AGG | - | chr1_3:68213089-68213108 | None:intergenic | 30.0% | |
AAGTTCTTAACATCATCCAA+CGG | - | chr1_3:68213685-68213704 | None:intergenic | 30.0% | |
!!! | AAGTCCCTTTTTTTGATATG+AGG | + | chr1_3:68213855-68213874 | Msa0136380:intron | 30.0% |
ATATTCTAACTGTATCAGAG+TGG | + | chr1_3:68214026-68214045 | Msa0136380:intron | 30.0% | |
AGTTCATACTGTTGGAAAAA+TGG | - | chr1_3:68214151-68214170 | None:intergenic | 30.0% | |
! | ACACAGCTGTCTAAAATATT+GGG | - | chr1_3:68214241-68214260 | None:intergenic | 30.0% |
! | AACACAGCTGTCTAAAATAT+TGG | - | chr1_3:68214242-68214261 | None:intergenic | 30.0% |
! | ATACTAGTGATGATGAAGAT+TGG | + | chr1_3:68214288-68214307 | Msa0136380:CDS | 30.0% |
! | TACTAGTGATGATGAAGATT+GGG | + | chr1_3:68214289-68214308 | Msa0136380:CDS | 30.0% |
!!! | GTCAGTTTCTTTTTTCTACT+TGG | - | chr1_3:68214329-68214348 | None:intergenic | 30.0% |
GGATCTTCATACAATAAACT+TGG | + | chr1_3:68214500-68214519 | Msa0136380:CDS | 30.0% | |
! | GTGATTGTTAAGTTCTGTTT+TGG | + | chr1_3:68214539-68214558 | Msa0136380:intron | 30.0% |
TGCATACTAATATTCCCTTT+CGG | + | chr1_3:68214587-68214606 | Msa0136380:intron | 30.0% | |
AATTGAATGATAGACCGAAA+GGG | - | chr1_3:68214604-68214623 | None:intergenic | 30.0% | |
AAATTGAATGATAGACCGAA+AGG | - | chr1_3:68214605-68214624 | None:intergenic | 30.0% | |
!!! | GAATTGCAGAAGTGATTTTT+TGG | + | chr1_3:68214662-68214681 | Msa0136380:intron | 30.0% |
!!! | ATTGCAGAAGTGATTTTTTG+GGG | + | chr1_3:68214664-68214683 | Msa0136380:intron | 30.0% |
TATAGTTTACTTGAGGTAGA+AGG | + | chr1_3:68214711-68214730 | Msa0136380:intron | 30.0% | |
ATAACTGTTATTCCTGCAAA+AGG | - | chr1_3:68214823-68214842 | None:intergenic | 30.0% | |
TTTCCATTCAAAAGGAGATT+AGG | + | chr1_3:68214898-68214917 | Msa0136380:intron | 30.0% | |
ATACAAGAATAGTCACTCTA+AGG | - | chr1_3:68214973-68214992 | None:intergenic | 30.0% | |
!!! | TGTTTTTAGCATTGCTCTTA+TGG | + | chr1_3:68215099-68215118 | Msa0136380:intron | 30.0% |
AACCATTTGTCAACCTATAA+GGG | - | chr1_3:68215175-68215194 | None:intergenic | 30.0% | |
AAACCATTTGTCAACCTATA+AGG | - | chr1_3:68215176-68215195 | None:intergenic | 30.0% | |
! | TTATAGGTTGACAAATGGTT+TGG | + | chr1_3:68215175-68215194 | Msa0136380:intron | 30.0% |
AGCTGAAAATAAAGGAGATA+GGG | + | chr1_3:68215282-68215301 | Msa0136380:CDS | 30.0% | |
! | GACTTAATTTCCTTTTCGTA+AGG | + | chr1_3:68215587-68215606 | Msa0136380:exon | 30.0% |
!!! | TTTTTAAGTGTTTGCATGAG+GGG | - | chr1_3:68215776-68215795 | None:intergenic | 30.0% |
ATAAGGTCTCCATAACTAAA+CGG | - | chr1_3:68215833-68215852 | None:intergenic | 30.0% | |
! | ATCATTTGGTGGAAACAATA+AGG | - | chr1_3:68215850-68215869 | None:intergenic | 30.0% |
TTGAAGCTTGAGATACTAAA+AGG | - | chr1_3:68215884-68215903 | None:intergenic | 30.0% | |
! | TTTATATGGATGCGGATTAA+AGG | + | chr1_3:68215971-68215990 | Msa0136380:three_prime_UTR | 30.0% |
TCTTCTCCTTCTTCATGTTA+GGG | - | chr1_3:68208937-68208956 | None:intergenic | 35.0% | |
TTCTTCTCCTTCTTCATGTT+AGG | - | chr1_3:68208938-68208957 | None:intergenic | 35.0% | |
AACATGAAGAAGGAGAAGAA+CGG | + | chr1_3:68208938-68208957 | Msa0136380:five_prime_UTR | 35.0% | |
ATACATACTCCTCCAAATCT+GGG | - | chr1_3:68208967-68208986 | None:intergenic | 35.0% | |
TATACATACTCCTCCAAATC+TGG | - | chr1_3:68208968-68208987 | None:intergenic | 35.0% | |
AGGAATATGAAGATGAAGGA+AGG | - | chr1_3:68209095-68209114 | None:intergenic | 35.0% | |
AATTTGAAAGGGAAAGGGAA+AGG | - | chr1_3:68209184-68209203 | None:intergenic | 35.0% | |
CGGTAAATTTGAAAGGGAAA+GGG | - | chr1_3:68209189-68209208 | None:intergenic | 35.0% | |
ACGGTAAATTTGAAAGGGAA+AGG | - | chr1_3:68209190-68209209 | None:intergenic | 35.0% | |
!! | ACAACTAGCTTTAACGGTAA+CGG | - | chr1_3:68209599-68209618 | None:intergenic | 35.0% |
GTAGTTCTTAGACTTACGAA+AGG | + | chr1_3:68209817-68209836 | Msa0136380:intron | 35.0% | |
! | GGACTAATGATTAGTTCAAC+TGG | + | chr1_3:68209879-68209898 | Msa0136380:five_prime_UTR | 35.0% |
TTCTCAGTCGTAAAATCGTT+GGG | - | chr1_3:68209918-68209937 | None:intergenic | 35.0% | |
! | GATTTTACGACTGAGAAGAT+AGG | + | chr1_3:68209921-68209940 | Msa0136380:five_prime_UTR | 35.0% |
AATTCTGTTATTCAACTGCC+TGG | + | chr1_3:68210075-68210094 | Msa0136380:CDS | 35.0% | |
TTGTGGTTGTTCTTCAACAA+GGG | - | chr1_3:68210124-68210143 | None:intergenic | 35.0% | |
TGATTTCACTTGAACAGGAA+CGG | - | chr1_3:68210148-68210167 | None:intergenic | 35.0% | |
AAATTCTGTGAATGAGCTAC+TGG | + | chr1_3:68210167-68210186 | Msa0136380:CDS | 35.0% | |
! | ATTAGTTCTCAAAACGAACC+TGG | + | chr1_3:68210219-68210238 | Msa0136380:CDS | 35.0% |
! | ATTGTGTTTGGTCTTCAACA+AGG | - | chr1_3:68210269-68210288 | None:intergenic | 35.0% |
CAAGTGAAAACAGAATCTTC+TGG | + | chr1_3:68210300-68210319 | Msa0136380:CDS | 35.0% | |
AGTAATATCTCAGTTGAGCT+CGG | - | chr1_3:68210626-68210645 | None:intergenic | 35.0% | |
ATTGATGCTTATTCTGGTGA+GGG | + | chr1_3:68210675-68210694 | Msa0136380:CDS | 35.0% | |
TAAATTCTCCCAATGAGCTA+AGG | - | chr1_3:68210795-68210814 | None:intergenic | 35.0% | |
TAATTGCTTGCCAACTGAAA+TGG | + | chr1_3:68210871-68210890 | Msa0136380:intron | 35.0% | |
AGATGTAGTTCCATTTCAGT+TGG | - | chr1_3:68210884-68210903 | None:intergenic | 35.0% | |
AACTGAAATGGAACTACATC+TGG | + | chr1_3:68210883-68210902 | Msa0136380:intron | 35.0% | |
! | GAACTACATCTGGAATATTC+TGG | + | chr1_3:68210893-68210912 | Msa0136380:intron | 35.0% |
TCACAATATTCCAACACATG+CGG | - | chr1_3:68210952-68210971 | None:intergenic | 35.0% | |
TCTAGTACATGATCAGAACA+TGG | - | chr1_3:68211019-68211038 | None:intergenic | 35.0% | |
AGGTTCATTTGAATTTGACG+TGG | + | chr1_3:68211496-68211515 | Msa0136380:intron | 35.0% | |
TTCTTGGGATCCATTTAATC+TGG | + | chr1_3:68211773-68211792 | Msa0136380:intron | 35.0% | |
!! | CGTTTTACCAAATTGGCTTA+AGG | + | chr1_3:68211839-68211858 | Msa0136380:CDS | 35.0% |
AATTTCGCCTTAAGCCAATT+TGG | - | chr1_3:68211849-68211868 | None:intergenic | 35.0% | |
CAATCCTGTAGTAAGATTTG+GGG | - | chr1_3:68211884-68211903 | None:intergenic | 35.0% | |
AAATAAGATGTGGCATACAC+GGG | - | chr1_3:68211945-68211964 | None:intergenic | 35.0% | |
CAAATAAGATGTGGCATACA+CGG | - | chr1_3:68211946-68211965 | None:intergenic | 35.0% | |
CGAACAACACAAATAAGATG+TGG | - | chr1_3:68211955-68211974 | None:intergenic | 35.0% | |
! | TTTGTGCCACATCTTATTTG+TGG | + | chr1_3:68212040-68212059 | Msa0136380:intron | 35.0% |
TGAATGCCACAAATAAGATG+TGG | - | chr1_3:68212049-68212068 | None:intergenic | 35.0% | |
AATAAAACAGAGGGGAAGAA+TGG | - | chr1_3:68212188-68212207 | None:intergenic | 35.0% | |
GGAAAAATTAAAGCCAGAGA+AGG | + | chr1_3:68212432-68212451 | Msa0136380:CDS | 35.0% | |
! | TAATTTGCGTCGCAGAATTT+CGG | - | chr1_3:68212476-68212495 | None:intergenic | 35.0% |
TGCGACGCAAATTAAAAATC+AGG | + | chr1_3:68212482-68212501 | Msa0136380:CDS | 35.0% | |
GCGACGCAAATTAAAAATCA+GGG | + | chr1_3:68212483-68212502 | Msa0136380:CDS | 35.0% | |
GGAGTGATCAATTAATCAAG+TGG | - | chr1_3:68212824-68212843 | None:intergenic | 35.0% | |
!! | GAACTTGTTAACGACTTGTT+AGG | + | chr1_3:68212952-68212971 | Msa0136380:intron | 35.0% |
GATAAGTCACATAATCAGGA+GGG | - | chr1_3:68213275-68213294 | None:intergenic | 35.0% | |
CAAGGATAAGTCACATAATC+AGG | - | chr1_3:68213279-68213298 | None:intergenic | 35.0% | |
ATTAAGGATAACATGTCCAC+CGG | + | chr1_3:68213637-68213656 | Msa0136380:CDS | 35.0% | |
TGCTAAAGATGACAGTTCAT+CGG | - | chr1_3:68213749-68213768 | None:intergenic | 35.0% | |
! | ACATTTCTTTTCCCAGAAAC+CGG | - | chr1_3:68213802-68213821 | None:intergenic | 35.0% |
CTGGGAAAAGAAATGTTGAA+AGG | + | chr1_3:68213806-68213825 | Msa0136380:CDS | 35.0% | |
GAAAAGAAATGTTGAAAGGC+TGG | + | chr1_3:68213810-68213829 | Msa0136380:CDS | 35.0% | |
! | GACTTACTTCATACAGCTTT+TGG | - | chr1_3:68213840-68213859 | None:intergenic | 35.0% |
ATGCTGTAAGTTGTATGTGT+TGG | + | chr1_3:68213962-68213981 | Msa0136380:intron | 35.0% | |
AAGTCTTGAGTTCATACTGT+TGG | - | chr1_3:68214159-68214178 | None:intergenic | 35.0% | |
TGAACTCAAGACTTCATTAG+TGG | + | chr1_3:68214165-68214184 | Msa0136380:intron | 35.0% | |
GAACTCAAGACTTCATTAGT+GGG | + | chr1_3:68214166-68214185 | Msa0136380:intron | 35.0% | |
CATCATCACTAGTATCACTA+TGG | - | chr1_3:68214283-68214302 | None:intergenic | 35.0% | |
! | TTATTTGAGGCGTTTCCATT+TGG | - | chr1_3:68214374-68214393 | None:intergenic | 35.0% |
!!! | TTGCAGAAGTGATTTTTTGG+GGG | + | chr1_3:68214665-68214684 | Msa0136380:intron | 35.0% |
! | ATAATAACTGGTCCTTTTGC+AGG | + | chr1_3:68214808-68214827 | Msa0136380:intron | 35.0% |
AGTGTTTGTGCAGTAAATCA+GGG | - | chr1_3:68214849-68214868 | None:intergenic | 35.0% | |
TCTCTCTCTTTCCATTCAAA+AGG | + | chr1_3:68214890-68214909 | Msa0136380:intron | 35.0% | |
AATGGTTAACTCAGAGTCAT+GGG | - | chr1_3:68215145-68215164 | None:intergenic | 35.0% | |
! | ACCATTCTTTTCTCCCTTAT+AGG | + | chr1_3:68215159-68215178 | Msa0136380:intron | 35.0% |
ACCTATAAGGGAGAAAAGAA+TGG | - | chr1_3:68215163-68215182 | None:intergenic | 35.0% | |
GAGCTGAAAATAAAGGAGAT+AGG | + | chr1_3:68215281-68215300 | Msa0136380:CDS | 35.0% | |
GCTGAAAATAAAGGAGATAG+GGG | + | chr1_3:68215331-68215350 | Msa0136380:CDS | 35.0% | |
AATCAAAGATTGAGCCGTTA+TGG | - | chr1_3:68215516-68215535 | None:intergenic | 35.0% | |
CTCAATCTTTGATTGCTTAC+CGG | + | chr1_3:68215522-68215541 | Msa0136380:CDS | 35.0% | |
AATCTTGCTACCTTACGAAA+AGG | - | chr1_3:68215600-68215619 | None:intergenic | 35.0% | |
TGGATCTCAAACGATATTCT+TGG | + | chr1_3:68215666-68215685 | Msa0136380:three_prime_UTR | 35.0% | |
ATCTCAAACGATATTCTTGG+AGG | + | chr1_3:68215669-68215688 | Msa0136380:three_prime_UTR | 35.0% | |
! | TAGTTGTCAGTTAGCAGTTT+TGG | + | chr1_3:68215796-68215815 | Msa0136380:three_prime_UTR | 35.0% |
TTGTTAATAGTGATGCGACA+TGG | - | chr1_3:68215924-68215943 | None:intergenic | 35.0% | |
GAGCATCATTTATATGGATG+CGG | + | chr1_3:68215963-68215982 | Msa0136380:three_prime_UTR | 35.0% | |
AGGTTCGATCTAACGTGAAA+CGG | - | chr1_3:68209075-68209094 | None:intergenic | 40.0% | |
TTCATCTTCATATTCCTCGC+CGG | + | chr1_3:68209098-68209117 | Msa0136380:five_prime_UTR | 40.0% | |
AGGAAGTGGTGTGAAAGAAA+AGG | - | chr1_3:68209164-68209183 | None:intergenic | 40.0% | |
AGAGAAGCAGAAGGAATCTA+TGG | - | chr1_3:68209223-68209242 | None:intergenic | 40.0% | |
GCAAGAAAAAGAGAAGCAGA+AGG | - | chr1_3:68209232-68209251 | None:intergenic | 40.0% | |
!! | CCAGGTACAACTAGCTTTAA+CGG | - | chr1_3:68209605-68209624 | None:intergenic | 40.0% |
TGTAAAGAACAAAGCTCACC+AGG | - | chr1_3:68209623-68209642 | None:intergenic | 40.0% | |
CTTAGACTTACGAAAGGCTT+TGG | + | chr1_3:68209823-68209842 | Msa0136380:five_prime_UTR | 40.0% | |
TTGTGTGATGTGTGTTTCCT+TGG | + | chr1_3:68209858-68209877 | Msa0136380:five_prime_UTR | 40.0% | |
CTTCTCAGTCGTAAAATCGT+TGG | - | chr1_3:68209919-68209938 | None:intergenic | 40.0% | |
GTTGTGGTTGTTCTTCAACA+AGG | - | chr1_3:68210125-68210144 | None:intergenic | 40.0% | |
GATTTCACTTGAACAGGAAC+GGG | - | chr1_3:68210147-68210166 | None:intergenic | 40.0% | |
! | TTTTTCGCAACATCTCCAGA+AGG | - | chr1_3:68210198-68210217 | None:intergenic | 40.0% |
! | GATTCTGTTTTCACTTGAGC+AGG | - | chr1_3:68210297-68210316 | None:intergenic | 40.0% |
! | TCAATCGGTTCAGGATCTTT+AGG | - | chr1_3:68210498-68210517 | None:intergenic | 40.0% |
! | GTAACAGTATCAATCGGTTC+AGG | - | chr1_3:68210507-68210526 | None:intergenic | 40.0% |
GATTGATGCTTATTCTGGTG+AGG | + | chr1_3:68210674-68210693 | Msa0136380:CDS | 40.0% | |
CTCATTGGGAGAATTTAGAG+CGG | + | chr1_3:68210798-68210817 | Msa0136380:intron | 40.0% | |
AAGTCTATAACCGCATGTGT+TGG | + | chr1_3:68210939-68210958 | Msa0136380:intron | 40.0% | |
AGTACACGAGAACAAATTCG+TGG | + | chr1_3:68211110-68211129 | Msa0136380:intron | 40.0% | |
GTACACGAGAACAAATTCGT+GGG | + | chr1_3:68211111-68211130 | Msa0136380:intron | 40.0% | |
TCATCTAGGGGATACTATAC+TGG | - | chr1_3:68211203-68211222 | None:intergenic | 40.0% | |
!! | TCAAATCACTTTGGCTTGCA+TGG | + | chr1_3:68211280-68211299 | Msa0136380:intron | 40.0% |
TCAAACGGTGAGTGTATACA+TGG | + | chr1_3:68211321-68211340 | Msa0136380:intron | 40.0% | |
CAAACGGTGAGTGTATACAT+GGG | + | chr1_3:68211322-68211341 | Msa0136380:intron | 40.0% | |
AAACGGTGAGTGTATACATG+GGG | + | chr1_3:68211323-68211342 | Msa0136380:intron | 40.0% | |
AACTCTCGTACCATATAGCA+AGG | + | chr1_3:68211476-68211495 | Msa0136380:intron | 40.0% | |
! | AGAATGCATCGATCCATGTT+TGG | + | chr1_3:68211636-68211655 | Msa0136380:intron | 40.0% |
CAACAAGGGACCAGATTAAA+TGG | - | chr1_3:68211786-68211805 | None:intergenic | 40.0% | |
GGCTCAGATTAAATGGCAAA+AGG | - | chr1_3:68211814-68211833 | None:intergenic | 40.0% | |
TTGGATTCGTTATGTGCTGA+AGG | + | chr1_3:68212520-68212539 | Msa0136380:CDS | 40.0% | |
ATTCGTTATGTGCTGAAGGA+AGG | + | chr1_3:68212524-68212543 | Msa0136380:CDS | 40.0% | |
AAAATGCCAGACCAAAGTGT+TGG | + | chr1_3:68212696-68212715 | Msa0136380:CDS | 40.0% | |
CTGTCTTCAGTTAACAATGG+AGG | - | chr1_3:68212790-68212809 | None:intergenic | 40.0% | |
CATCTTTGCAATCACATCCT+GGG | - | chr1_3:68212924-68212943 | None:intergenic | 40.0% | |
TCATCTTTGCAATCACATCC+TGG | - | chr1_3:68212925-68212944 | None:intergenic | 40.0% | |
!! | TCTCTCTCTTACTGATTCCT+GGG | + | chr1_3:68212981-68213000 | Msa0136380:intron | 40.0% |
GGATAAGTCACATAATCAGG+AGG | - | chr1_3:68213276-68213295 | None:intergenic | 40.0% | |
TGTGACTTATCCTTGTTCAG+AGG | + | chr1_3:68213284-68213303 | Msa0136380:intron | 40.0% | |
GTGACTTATCCTTGTTCAGA+GGG | + | chr1_3:68213285-68213304 | Msa0136380:intron | 40.0% | |
AAGTATCTTGGATCACAACC+TGG | + | chr1_3:68213336-68213355 | Msa0136380:CDS | 40.0% | |
AGTATCTTGGATCACAACCT+GGG | + | chr1_3:68213337-68213356 | Msa0136380:CDS | 40.0% | |
TCATCGTCAGAATCATCTGA+AGG | - | chr1_3:68213367-68213386 | None:intergenic | 40.0% | |
TTATAATCCTGATGCTCCAG+AGG | + | chr1_3:68213390-68213409 | Msa0136380:CDS | 40.0% | |
! | ATCTGCCTCTGAGAAATTTG+AGG | + | chr1_3:68213462-68213481 | Msa0136380:CDS | 40.0% |
TGGATCCTCAAATTTCTCAG+AGG | - | chr1_3:68213470-68213489 | None:intergenic | 40.0% | |
TCTGAGAAATTTGAGGATCC+AGG | + | chr1_3:68213469-68213488 | Msa0136380:CDS | 40.0% | |
TCAATACATGGGTCTTCCTT+CGG | + | chr1_3:68213501-68213520 | Msa0136380:CDS | 40.0% | |
GTATCTTTAGCACCAGGATT+GGG | - | chr1_3:68213562-68213581 | None:intergenic | 40.0% | |
AGTATCTTTAGCACCAGGAT+TGG | - | chr1_3:68213563-68213582 | None:intergenic | 40.0% | |
TCTTCAGTATCTTTAGCACC+AGG | - | chr1_3:68213568-68213587 | None:intergenic | 40.0% | |
CTCAGAGTCAGATGTGAAAT+CGG | - | chr1_3:68213602-68213621 | None:intergenic | 40.0% | |
GGATCTTGCTGCTACAATTA+AGG | + | chr1_3:68213621-68213640 | Msa0136380:CDS | 40.0% | |
AGATGTGACATCATCTTGTC+CGG | - | chr1_3:68213659-68213678 | None:intergenic | 40.0% | |
CGGTTATAGATGGCTTCTTA+CGG | - | chr1_3:68213729-68213748 | None:intergenic | 40.0% | |
! | GACAGTTCATCGGTTATAGA+TGG | - | chr1_3:68213739-68213758 | None:intergenic | 40.0% |
AAATCCTCTTCACCAAGATC+TGG | - | chr1_3:68213775-68213794 | None:intergenic | 40.0% | |
GTACTCCGATCTTATATGCA+TGG | + | chr1_3:68213889-68213908 | Msa0136380:intron | 40.0% | |
GCAGACCATGCATATAAGAT+CGG | - | chr1_3:68213897-68213916 | None:intergenic | 40.0% | |
! | GCTGTCTAAAATATTGGGAG+AGG | - | chr1_3:68214236-68214255 | None:intergenic | 40.0% |
TATGGTATGTCTCCTGCAAT+AGG | - | chr1_3:68214265-68214284 | None:intergenic | 40.0% | |
!!! | CATCCTTCAAGTGTTTTGGT+GGG | - | chr1_3:68214458-68214477 | None:intergenic | 40.0% |
CAAAACACTTGAAGGATGCA+CGG | + | chr1_3:68214460-68214479 | Msa0136380:CDS | 40.0% | |
ACGGAATCTGGTAAAAAACG+TGG | + | chr1_3:68214479-68214498 | Msa0136380:CDS | 40.0% | |
!!! | TGCAGAAGTGATTTTTTGGG+GGG | + | chr1_3:68214666-68214685 | Msa0136380:intron | 40.0% |
GAGTGTTTGTGCAGTAAATC+AGG | - | chr1_3:68214850-68214869 | None:intergenic | 40.0% | |
! | GTGCCTAATCTCCTTTTGAA+TGG | - | chr1_3:68214904-68214923 | None:intergenic | 40.0% |
CTCAACATGCATGCAAGTAT+GGG | - | chr1_3:68214934-68214953 | None:intergenic | 40.0% | |
TTGCATGCATGTTGAGGTAA+AGG | + | chr1_3:68214938-68214957 | Msa0136380:intron | 40.0% | |
TGCATGCATGTTGAGGTAAA+GGG | + | chr1_3:68214939-68214958 | Msa0136380:intron | 40.0% | |
GAATGGTTAACTCAGAGTCA+TGG | - | chr1_3:68215146-68215165 | None:intergenic | 40.0% | |
! | CTCCCTTATAGGTTGACAAA+TGG | + | chr1_3:68215170-68215189 | Msa0136380:intron | 40.0% |
! | AATGGTTTGGCAATTCTCGT+TGG | + | chr1_3:68215188-68215207 | Msa0136380:CDS | 40.0% |
GTTCCGACATTCATCATGTA+AGG | + | chr1_3:68215213-68215232 | Msa0136380:CDS | 40.0% | |
CCTCCTTACATGATGAATGT+CGG | - | chr1_3:68215219-68215238 | None:intergenic | 40.0% | |
! | ATTTTCAGCTCCACTGTCAT+TGG | - | chr1_3:68215272-68215291 | None:intergenic | 40.0% |
GACAGTGGAGCTGAAAATAA+AGG | + | chr1_3:68215274-68215293 | Msa0136380:CDS | 40.0% | |
GAAAGCGGAGCTGAAAATAA+AGG | + | chr1_3:68215322-68215341 | Msa0136380:CDS | 40.0% | |
AGGTGAAAACAAAGGAGAGA+CGG | + | chr1_3:68215384-68215403 | Msa0136380:CDS | 40.0% | |
! | TTTTTCTCCACTTGTCTCCT+GGG | - | chr1_3:68215425-68215444 | None:intergenic | 40.0% |
! | ATTTTTCTCCACTTGTCTCC+TGG | - | chr1_3:68215426-68215445 | None:intergenic | 40.0% |
!!! | GCACCGCTTTTTTCTCACAT+TGG | + | chr1_3:68208994-68209013 | Msa0136380:five_prime_UTR | 45.0% |
GCGCCAATGTGAGAAAAAAG+CGG | - | chr1_3:68209000-68209019 | None:intergenic | 45.0% | |
AACGGTGAGAGAGAAAGAGA+GGG | - | chr1_3:68209057-68209076 | None:intergenic | 45.0% | |
AAACGGTGAGAGAGAAAGAG+AGG | - | chr1_3:68209058-68209077 | None:intergenic | 45.0% | |
GGCGAGGAATATGAAGATGA+AGG | - | chr1_3:68209099-68209118 | None:intergenic | 45.0% | |
GTGACATAGTAATCTCCGTC+CGG | - | chr1_3:68209120-68209139 | None:intergenic | 45.0% | |
AAAGGGAAAGGGAAAGGAAG+TGG | - | chr1_3:68209178-68209197 | None:intergenic | 45.0% | |
! | GTGAGAAGCACGAACTAAGA+CGG | - | chr1_3:68209286-68209305 | None:intergenic | 45.0% |
!! | ACTAGCTTTAACGGTAACGG+CGG | - | chr1_3:68209596-68209615 | None:intergenic | 45.0% |
CCGTTAAAGCTAGTTGTACC+TGG | + | chr1_3:68209602-68209621 | Msa0136380:five_prime_UTR | 45.0% | |
! | CTTACGAAAGGCTTTGGTTG+TGG | + | chr1_3:68209829-68209848 | Msa0136380:five_prime_UTR | 45.0% |
GACAGAGAACAAAGTGTGCT+TGG | + | chr1_3:68209988-68210007 | Msa0136380:CDS | 45.0% | |
ACAAAGTGTGCTTGGTACTG+TGG | + | chr1_3:68209996-68210015 | Msa0136380:CDS | 45.0% | |
GAAACGAGTGATGCAGTTAC+CGG | + | chr1_3:68210243-68210262 | Msa0136380:CDS | 45.0% | |
! | TGTTTGGTCTTCAACAAGGC+CGG | - | chr1_3:68210265-68210284 | None:intergenic | 45.0% |
GAGCAGGAACAGATTGTGTT+TGG | - | chr1_3:68210281-68210300 | None:intergenic | 45.0% | |
GGTCAAATGCGAGTGAAACA+CGG | + | chr1_3:68210378-68210397 | Msa0136380:CDS | 45.0% | |
GTCAAATGCGAGTGAAACAC+GGG | + | chr1_3:68210379-68210398 | Msa0136380:CDS | 45.0% | |
TCAAATGCGAGTGAAACACG+GGG | + | chr1_3:68210380-68210399 | Msa0136380:CDS | 45.0% | |
ATCTCCACTGGTGTGTCAAA+CGG | + | chr1_3:68211306-68211325 | Msa0136380:intron | 45.0% | |
AGACAGGTACACGGAAAGTA+AGG | - | chr1_3:68211601-68211620 | None:intergenic | 45.0% | |
CGATACTGAAGACAGGTACA+CGG | - | chr1_3:68211610-68211629 | None:intergenic | 45.0% | |
TTCAGCTCGATACTGAAGAC+AGG | - | chr1_3:68211617-68211636 | None:intergenic | 45.0% | |
GGCAAAAGGCAAGACAACAA+GGG | - | chr1_3:68211800-68211819 | None:intergenic | 45.0% | |
TGGCAAAAGGCAAGACAACA+AGG | - | chr1_3:68211801-68211820 | None:intergenic | 45.0% | |
CCAATTTGGTAAAACGGGTC+TGG | - | chr1_3:68211835-68211854 | None:intergenic | 45.0% | |
! | CCAGACCCGTTTTACCAAAT+TGG | + | chr1_3:68211832-68211851 | Msa0136380:intron | 45.0% |
AGCACCCCAAATCTTACTAC+AGG | + | chr1_3:68211877-68211896 | Msa0136380:CDS | 45.0% | |
TGTGGCACAAACACTGTGAA+TGG | - | chr1_3:68212031-68212050 | None:intergenic | 45.0% | |
AGCCAGAGAAGGAGATTCAA+CGG | + | chr1_3:68212443-68212462 | Msa0136380:CDS | 45.0% | |
!! | GAGATTGATAGCGAGGATGT+AGG | + | chr1_3:68212577-68212596 | Msa0136380:intron | 45.0% |
TAGTAGCCAACACTTTGGTC+TGG | - | chr1_3:68212705-68212724 | None:intergenic | 45.0% | |
!! | GTCTCTCTCTTACTGATTCC+TGG | + | chr1_3:68212980-68212999 | Msa0136380:intron | 45.0% |
! | AGTTTTCCAACTAACCTCCC+AGG | - | chr1_3:68213001-68213020 | None:intergenic | 45.0% |
!! | TACAGCTGCTGGAAGTATCT+TGG | + | chr1_3:68213324-68213343 | Msa0136380:CDS | 45.0% |
AATCATCTGAAGGAAGTCCC+AGG | - | chr1_3:68213357-68213376 | None:intergenic | 45.0% | |
! | ATGTATTGATCCTCATGGCC+TGG | - | chr1_3:68213490-68213509 | None:intergenic | 45.0% |
AGGCCATGAGGATCAATACA+TGG | + | chr1_3:68213489-68213508 | Msa0136380:CDS | 45.0% | |
GGCCATGAGGATCAATACAT+GGG | + | chr1_3:68213490-68213509 | Msa0136380:CDS | 45.0% | |
! | GACCCATGTATTGATCCTCA+TGG | - | chr1_3:68213495-68213514 | None:intergenic | 45.0% |
TCTTCCTTCGGAAGATTCAG+AGG | + | chr1_3:68213513-68213532 | Msa0136380:CDS | 45.0% | |
TCATCCTCTGAATCTTCCGA+AGG | - | chr1_3:68213520-68213539 | None:intergenic | 45.0% | |
CGATTTCACATCTGACTCTG+AGG | + | chr1_3:68213600-68213619 | Msa0136380:CDS | 45.0% | |
TCTTTAGCAGAGCCAGATCT+TGG | + | chr1_3:68213760-68213779 | Msa0136380:CDS | 45.0% | |
TGGTGAAGAGGATTTGACTC+CGG | + | chr1_3:68213780-68213799 | Msa0136380:CDS | 45.0% | |
AGGATTTGACTCCGGTTTCT+GGG | + | chr1_3:68213788-68213807 | Msa0136380:CDS | 45.0% | |
TCTACTTGGAGTAGCAGTGT+CGG | - | chr1_3:68214315-68214334 | None:intergenic | 45.0% | |
TGACCGCCAAAATAACTCCA+GGG | + | chr1_3:68214345-68214364 | Msa0136380:CDS | 45.0% | |
!!! | TGACCCTGGAGTTATTTTGG+CGG | - | chr1_3:68214351-68214370 | None:intergenic | 45.0% |
! | TGGTGACCCTGGAGTTATTT+TGG | - | chr1_3:68214354-68214373 | None:intergenic | 45.0% |
ATAACTCCAGGGTCACCAAA+TGG | + | chr1_3:68214356-68214375 | Msa0136380:CDS | 45.0% | |
AGTACGGCGGGAATTATTTG+AGG | - | chr1_3:68214387-68214406 | None:intergenic | 45.0% | |
TCACCCACCAAAACACTTGA+AGG | + | chr1_3:68214452-68214471 | Msa0136380:CDS | 45.0% | |
!! | GCATCCTTCAAGTGTTTTGG+TGG | - | chr1_3:68214459-68214478 | None:intergenic | 45.0% |
! | CGTGCATCCTTCAAGTGTTT+TGG | - | chr1_3:68214462-68214481 | None:intergenic | 45.0% |
ACTTGGAGAAGCTGTTGTTC+AGG | + | chr1_3:68214517-68214536 | Msa0136380:CDS | 45.0% | |
!!! | AAGTGATTTTTTGGGGGGAG+AGG | + | chr1_3:68214671-68214690 | Msa0136380:intron | 45.0% |
!!! | AGTGATTTTTTGGGGGGAGA+GGG | + | chr1_3:68214672-68214691 | Msa0136380:intron | 45.0% |
CCTCAACATGCATGCAAGTA+TGG | - | chr1_3:68214935-68214954 | None:intergenic | 45.0% | |
CCATACTTGCATGCATGTTG+AGG | + | chr1_3:68214932-68214951 | Msa0136380:intron | 45.0% | |
! | TTGCGCCAAGCTTTCTTTTG+CGG | - | chr1_3:68215045-68215064 | None:intergenic | 45.0% |
!! | ACTGGGACTCACTTTTCAAC+AGG | + | chr1_3:68215067-68215086 | Msa0136380:CDS | 45.0% |
!! | GGACTCACTTTTCAACAGGT+AGG | + | chr1_3:68215071-68215090 | Msa0136380:intron | 45.0% |
GTTAACTCAGAGTCATGGGA+GGG | - | chr1_3:68215141-68215160 | None:intergenic | 45.0% | |
CCGACATTCATCATGTAAGG+AGG | + | chr1_3:68215216-68215235 | Msa0136380:CDS | 45.0% | |
! | TGAAGCATTACTACCTGGAC+TGG | - | chr1_3:68215242-68215261 | None:intergenic | 45.0% |
! | TGCTGTGAAGCATTACTACC+TGG | - | chr1_3:68215247-68215266 | None:intergenic | 45.0% |
AGGTAGTAATGCTTCACAGC+AGG | + | chr1_3:68215246-68215265 | Msa0136380:CDS | 45.0% | |
! | ATTTTCAGCTCCGCTTTCAC+TGG | - | chr1_3:68215320-68215339 | None:intergenic | 45.0% |
AAACCCCAAGCTCGAAGAAA+AGG | + | chr1_3:68215449-68215468 | Msa0136380:CDS | 45.0% | |
! | CTTCCTTTTCTTCGAGCTTG+GGG | - | chr1_3:68215455-68215474 | None:intergenic | 45.0% |
! | GCTTCCTTTTCTTCGAGCTT+GGG | - | chr1_3:68215456-68215475 | None:intergenic | 45.0% |
TTTGATTGCTTACCGGTAGC+TGG | + | chr1_3:68215529-68215548 | Msa0136380:CDS | 45.0% | |
TTATTGCTTGTGCCAGCTAC+CGG | - | chr1_3:68215544-68215563 | None:intergenic | 45.0% | |
GGATCTCAATCTCACACGAT+AGG | - | chr1_3:68215629-68215648 | None:intergenic | 45.0% | |
TCGTGTGAGATTGAGATCCT+CGG | + | chr1_3:68215630-68215649 | Msa0136380:three_prime_UTR | 45.0% | |
TCCTCGGATGATCATCATCT+TGG | + | chr1_3:68215646-68215665 | Msa0136380:three_prime_UTR | 45.0% | |
TCCAAGATGATGATCATCCG+AGG | - | chr1_3:68215650-68215669 | None:intergenic | 45.0% | |
!!! | TTCTTTTAATTATTATTTTT+TGG | + | chr1_3:68213242-68213261 | Msa0136380:intron | 5.0% |
!! | AATACTATAAATAAATATAT+TGG | + | chr1_3:68214749-68214768 | Msa0136380:intron | 5.0% |
CGCAAGCCCTAACATGAAGA+AGG | + | chr1_3:68208928-68208947 | Msa0136380:five_prime_UTR | 50.0% | |
GAAGAACGGTAGCCCAGATT+TGG | + | chr1_3:68208952-68208971 | Msa0136380:five_prime_UTR | 50.0% | |
GAGAGAAAGAGAGGGATGAG+TGG | - | chr1_3:68209049-68209068 | None:intergenic | 50.0% | |
TCTTCATATTCCTCGCCGGA+CGG | + | chr1_3:68209102-68209121 | Msa0136380:five_prime_UTR | 50.0% | |
CCAAGCAAGCAAGCAAGCTT+TGG | - | chr1_3:68209565-68209584 | None:intergenic | 50.0% | |
! | CCAAAGCTTGCTTGCTTGCT+TGG | + | chr1_3:68209562-68209581 | Msa0136380:five_prime_UTR | 50.0% |
! | ACGAAAGGCTTTGGTTGTGG+TGG | + | chr1_3:68209832-68209851 | Msa0136380:five_prime_UTR | 50.0% |
ACTGCATCTCTCATTTCGCC+AGG | - | chr1_3:68210096-68210115 | None:intergenic | 50.0% | |
!! | ACTTGAACAGGAACGGGTTG+TGG | - | chr1_3:68210141-68210160 | None:intergenic | 50.0% |
TTCGCAACATCTCCAGAAGG+TGG | - | chr1_3:68210195-68210214 | None:intergenic | 50.0% | |
ACTGCATCACTCGTTTCACC+AGG | - | chr1_3:68210240-68210259 | None:intergenic | 50.0% | |
ATGCTTATTCTGGTGAGGGC+TGG | + | chr1_3:68210679-68210698 | Msa0136380:CDS | 50.0% | |
TATTCTGGTGAGGGCTGGAA+AGG | + | chr1_3:68210684-68210703 | Msa0136380:CDS | 50.0% | |
! | CGGGTCTGGCTCAGATTAAA+TGG | - | chr1_3:68211821-68211840 | None:intergenic | 50.0% |
GAACAACTGATGCGCTAGCT+CGG | - | chr1_3:68211913-68211932 | None:intergenic | 50.0% | |
TGGCATACACGGGATAAGCT+TGG | - | chr1_3:68211935-68211954 | None:intergenic | 50.0% | |
GCCAGAGAAGGAGATTCAAC+GGG | + | chr1_3:68212444-68212463 | Msa0136380:CDS | 50.0% | |
!! | TGAGGGAGAGATTGATAGCG+AGG | + | chr1_3:68212570-68212589 | Msa0136380:CDS | 50.0% |
ATGGAGGATCCAAACAGAGC+TGG | - | chr1_3:68212774-68212793 | None:intergenic | 50.0% | |
!! | CTCTCTTACTGATTCCTGGG+AGG | + | chr1_3:68212984-68213003 | Msa0136380:intron | 50.0% |
CTGATTCCTGGGAGGTTAGT+TGG | + | chr1_3:68212992-68213011 | Msa0136380:intron | 50.0% | |
CGGGAAAAACCCTCTGAACA+AGG | - | chr1_3:68213297-68213316 | None:intergenic | 50.0% | |
ATTTGAGGATCCAGGCCATG+AGG | + | chr1_3:68213477-68213496 | Msa0136380:CDS | 50.0% | |
TGTGACATCATCTTGTCCGG+TGG | - | chr1_3:68213656-68213675 | None:intergenic | 50.0% | |
TGATGTCACATCTGCACCGT+TGG | + | chr1_3:68213666-68213685 | Msa0136380:CDS | 50.0% | |
AGAGCCAGATCTTGGTGAAG+AGG | + | chr1_3:68213768-68213787 | Msa0136380:CDS | 50.0% | |
GAGGATTTGACTCCGGTTTC+TGG | + | chr1_3:68213787-68213806 | Msa0136380:CDS | 50.0% | |
GACAGCTGTGTTCCTATTGC+AGG | + | chr1_3:68214250-68214269 | Msa0136380:intron | 50.0% | |
CTGACCGCCAAAATAACTCC+AGG | + | chr1_3:68214344-68214363 | Msa0136380:CDS | 50.0% | |
! | ATGCTGATGGGTGTTCCTCT+TGG | - | chr1_3:68214411-68214430 | None:intergenic | 50.0% |
CTTGAAGGATGCACGGAATC+TGG | + | chr1_3:68214467-68214486 | Msa0136380:CDS | 50.0% | |
! | CTTTCTTTTGCGGTCCGTTC+TGG | - | chr1_3:68215035-68215054 | None:intergenic | 50.0% |
ACGGACCGCAAAAGAAAGCT+TGG | + | chr1_3:68215037-68215056 | Msa0136380:CDS | 50.0% | |
AGAAAGCTTGGCGCAAGAAC+TGG | + | chr1_3:68215049-68215068 | Msa0136380:CDS | 50.0% | |
GAAAGCTTGGCGCAAGAACT+GGG | + | chr1_3:68215050-68215069 | Msa0136380:CDS | 50.0% | |
GGTTAACTCAGAGTCATGGG+AGG | - | chr1_3:68215142-68215161 | None:intergenic | 50.0% | |
GGTTTGGCAATTCTCGTTGG+AGG | + | chr1_3:68215191-68215210 | Msa0136380:CDS | 50.0% | |
AGGAGATAATGCTTCGCAGC+AGG | + | chr1_3:68215294-68215313 | Msa0136380:CDS | 50.0% | |
GACAGCGGAGGTGAAAACAA+AGG | + | chr1_3:68215376-68215395 | Msa0136380:CDS | 50.0% | |
! | GGAGCATCAACTAGTTTCCC+AGG | + | chr1_3:68215405-68215424 | Msa0136380:CDS | 50.0% |
CTAGTTTCCCAGGAGACAAG+TGG | + | chr1_3:68215415-68215434 | Msa0136380:CDS | 50.0% | |
! | CGCTTCCTTTTCTTCGAGCT+TGG | - | chr1_3:68215457-68215476 | None:intergenic | 50.0% |
GAACGGTAGCCCAGATTTGG+AGG | + | chr1_3:68208955-68208974 | Msa0136380:five_prime_UTR | 55.0% | |
ATAGTAATCTCCGTCCGGCG+AGG | - | chr1_3:68209115-68209134 | None:intergenic | 55.0% | |
GAGCTACTGGATCCACCTTC+TGG | + | chr1_3:68210180-68210199 | Msa0136380:CDS | 55.0% | |
GTGAGGGCTGGAAAGGATAC+AGG | + | chr1_3:68210691-68210710 | Msa0136380:CDS | 55.0% | |
CTTGCATGGTGCATCTCCAC+TGG | + | chr1_3:68211294-68211313 | Msa0136380:intron | 55.0% | |
CTCACCGTTTGACACACCAG+TGG | - | chr1_3:68211313-68211332 | None:intergenic | 55.0% | |
GCCCGTTGAATCTCCTTCTC+TGG | - | chr1_3:68212448-68212467 | None:intergenic | 55.0% | |
GCGTCGCAGAATTTCGGACT+TGG | - | chr1_3:68212470-68212489 | None:intergenic | 55.0% | |
! | TGTGATGGTGCTTGTGACCG+CGG | + | chr1_3:68212742-68212761 | Msa0136380:CDS | 55.0% |
AACAGAGCTGGTGATACCCG+CGG | - | chr1_3:68212762-68212781 | None:intergenic | 55.0% | |
CGGGTATCACCAGCTCTGTT+TGG | + | chr1_3:68212762-68212781 | Msa0136380:CDS | 55.0% | |
CATAACCAACCCTCATCGCC+AGG | - | chr1_3:68212901-68212920 | None:intergenic | 55.0% | |
!! | GATGAGGGTTGGTTATGCCC+AGG | + | chr1_3:68212904-68212923 | Msa0136380:CDS | 55.0% |
TCCAGCAGCTGTAGCTGCTT+CGG | - | chr1_3:68213317-68213336 | None:intergenic | 55.0% | |
!! | TTCGCATCCTCTGGAGCATC+AGG | - | chr1_3:68213400-68213419 | None:intergenic | 55.0% |
TGATGCTCCAGAGGATGCGA+AGG | + | chr1_3:68213399-68213418 | Msa0136380:CDS | 55.0% | |
CCTTCAACCTTCGCATCCTC+TGG | - | chr1_3:68213409-68213428 | None:intergenic | 55.0% | |
CCAGAGGATGCGAAGGTTGA+AGG | + | chr1_3:68213406-68213425 | Msa0136380:CDS | 55.0% | |
GAGGATGCGAAGGTTGAAGG+AGG | + | chr1_3:68213409-68213428 | Msa0136380:CDS | 55.0% | |
! | AGCACCAGGATTGGGAGCAT+CGG | - | chr1_3:68213554-68213573 | None:intergenic | 55.0% |
! | GCGTTTCCATTTGGTGACCC+TGG | - | chr1_3:68214365-68214384 | None:intergenic | 55.0% |
TGTTCCTCTTGGCAGTACGG+CGG | - | chr1_3:68214400-68214419 | None:intergenic | 55.0% | |
GGGTGTTCCTCTTGGCAGTA+CGG | - | chr1_3:68214403-68214422 | None:intergenic | 55.0% | |
TCATGTAAGGAGGCCAGTCC+AGG | + | chr1_3:68215226-68215245 | Msa0136380:CDS | 55.0% | |
TCACAGCAGGCCAATGACAG+TGG | + | chr1_3:68215259-68215278 | Msa0136380:CDS | 55.0% | |
! | GTTTTCACCTCCGCTGTCAG+TGG | - | chr1_3:68215374-68215393 | None:intergenic | 55.0% |
! | AGCCGCAGACATCTGAAGCA+GGG | + | chr1_3:68215485-68215504 | Msa0136380:CDS | 55.0% |
AGCCCTGCTTCAGATGTCTG+CGG | - | chr1_3:68215490-68215509 | None:intergenic | 55.0% | |
!! | GAAGCAGGGCTGGTCCATAA+CGG | + | chr1_3:68215499-68215518 | Msa0136380:CDS | 55.0% |
GAAGCAGCGACAGAGCTCTG+CGG | + | chr1_3:68210451-68210470 | Msa0136380:CDS | 60.0% | |
! | GTGATGGTGCTTGTGACCGC+GGG | + | chr1_3:68212743-68212762 | Msa0136380:CDS | 60.0% |
AACCAACCCTCATCGCCAGG+TGG | - | chr1_3:68212898-68212917 | None:intergenic | 60.0% | |
CCAGCAGCTGTAGCTGCTTC+GGG | - | chr1_3:68213316-68213335 | None:intergenic | 60.0% | |
GATCCCGATGCTCCCAATCC+TGG | + | chr1_3:68213547-68213566 | Msa0136380:CDS | 60.0% | |
!! | GCACCAGGATTGGGAGCATC+GGG | - | chr1_3:68213553-68213572 | None:intergenic | 60.0% |
ATTCCCGCCGTACTGCCAAG+AGG | + | chr1_3:68214393-68214412 | Msa0136380:CDS | 60.0% | |
GTTCCTCTTGGCAGTACGGC+GGG | - | chr1_3:68214399-68214418 | None:intergenic | 60.0% | |
TCGCAGCAGGCCAGTGAAAG+CGG | + | chr1_3:68215307-68215326 | Msa0136380:CDS | 60.0% | |
TCGCAGCAAGCCACTGACAG+CGG | + | chr1_3:68215361-68215380 | Msa0136380:CDS | 60.0% | |
! | GAGCCGCAGACATCTGAAGC+AGG | + | chr1_3:68215484-68215503 | Msa0136380:CDS | 60.0% |
! | GCAGACATCTGAAGCAGGGC+TGG | + | chr1_3:68215489-68215508 | Msa0136380:CDS | 60.0% |
CCCGAAGCAGCTACAGCTGC+TGG | + | chr1_3:68213313-68213332 | Msa0136380:CDS | 65.0% | |
CAGCAAGCCACTGACAGCGG+AGG | + | chr1_3:68215364-68215383 | Msa0136380:CDS | 65.0% | |
GCGACAGAGCTCTGCGGTCG+AGG | + | chr1_3:68210457-68210476 | Msa0136380:CDS | 70.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr1_3 | gene | 68208894 | 68216004 | 68208894 | ID=Msa0136380;Name=Msa0136380 |
chr1_3 | mRNA | 68208894 | 68216004 | 68208894 | ID=Msa0136380-mRNA-1;Parent=Msa0136380;Name=Msa0136380-mRNA-1;_AED=0.05;_eAED=0.05;_QI=460|0.7|0.81|0.90|0.8|0.72|11|416|847 |
chr1_3 | exon | 68208894 | 68209152 | 68208894 | ID=Msa0136380-mRNA-1:exon:23550;Parent=Msa0136380-mRNA-1 |
chr1_3 | exon | 68209551 | 68209623 | 68209551 | ID=Msa0136380-mRNA-1:exon:23551;Parent=Msa0136380-mRNA-1 |
chr1_3 | exon | 68209821 | 68210712 | 68209821 | ID=Msa0136380-mRNA-1:exon:23552;Parent=Msa0136380-mRNA-1 |
chr1_3 | exon | 68211836 | 68211946 | 68211836 | ID=Msa0136380-mRNA-1:exon:23553;Parent=Msa0136380-mRNA-1 |
chr1_3 | exon | 68212429 | 68212594 | 68212429 | ID=Msa0136380-mRNA-1:exon:23554;Parent=Msa0136380-mRNA-1 |
chr1_3 | exon | 68212685 | 68212808 | 68212685 | ID=Msa0136380-mRNA-1:exon:23555;Parent=Msa0136380-mRNA-1 |
chr1_3 | exon | 68212893 | 68212957 | 68212893 | ID=Msa0136380-mRNA-1:exon:23556;Parent=Msa0136380-mRNA-1 |
chr1_3 | exon | 68213304 | 68213852 | 68213304 | ID=Msa0136380-mRNA-1:exon:23557;Parent=Msa0136380-mRNA-1 |
chr1_3 | exon | 68214272 | 68214538 | 68214272 | ID=Msa0136380-mRNA-1:exon:23558;Parent=Msa0136380-mRNA-1 |
chr1_3 | exon | 68214999 | 68215088 | 68214999 | ID=Msa0136380-mRNA-1:exon:23559;Parent=Msa0136380-mRNA-1 |
chr1_3 | exon | 68215181 | 68216004 | 68215181 | ID=Msa0136380-mRNA-1:exon:23560;Parent=Msa0136380-mRNA-1 |
chr1_3 | five_prime_UTR | 68208894 | 68209152 | 68208894 | ID=Msa0136380-mRNA-1:five_prime_utr;Parent=Msa0136380-mRNA-1 |
chr1_3 | five_prime_UTR | 68209551 | 68209623 | 68209551 | ID=Msa0136380-mRNA-1:five_prime_utr;Parent=Msa0136380-mRNA-1 |
chr1_3 | five_prime_UTR | 68209821 | 68209948 | 68209821 | ID=Msa0136380-mRNA-1:five_prime_utr;Parent=Msa0136380-mRNA-1 |
chr1_3 | CDS | 68209949 | 68210712 | 68209949 | ID=Msa0136380-mRNA-1:cds;Parent=Msa0136380-mRNA-1 |
chr1_3 | CDS | 68211836 | 68211946 | 68211836 | ID=Msa0136380-mRNA-1:cds;Parent=Msa0136380-mRNA-1 |
chr1_3 | CDS | 68212429 | 68212594 | 68212429 | ID=Msa0136380-mRNA-1:cds;Parent=Msa0136380-mRNA-1 |
chr1_3 | CDS | 68212685 | 68212808 | 68212685 | ID=Msa0136380-mRNA-1:cds;Parent=Msa0136380-mRNA-1 |
chr1_3 | CDS | 68212893 | 68212957 | 68212893 | ID=Msa0136380-mRNA-1:cds;Parent=Msa0136380-mRNA-1 |
chr1_3 | CDS | 68213304 | 68213852 | 68213304 | ID=Msa0136380-mRNA-1:cds;Parent=Msa0136380-mRNA-1 |
chr1_3 | CDS | 68214272 | 68214538 | 68214272 | ID=Msa0136380-mRNA-1:cds;Parent=Msa0136380-mRNA-1 |
chr1_3 | CDS | 68214999 | 68215088 | 68214999 | ID=Msa0136380-mRNA-1:cds;Parent=Msa0136380-mRNA-1 |
chr1_3 | CDS | 68215181 | 68215588 | 68215181 | ID=Msa0136380-mRNA-1:cds;Parent=Msa0136380-mRNA-1 |
chr1_3 | three_prime_UTR | 68215589 | 68216004 | 68215589 | ID=Msa0136380-mRNA-1:three_prime_utr;Parent=Msa0136380-mRNA-1 |
Gene Sequence |
Protein sequence |