Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0538060 | XP_003604258.1 | 94.947 | 376 | 19 | 0 | 1 | 376 | 1 | 376 | 0.0 | 702 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0538060 | sp|P49243|FABH_ARATH | 65.979 | 388 | 112 | 4 | 6 | 375 | 18 | 403 | 0.0 | 520 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0538060 | G7JEG5 | 94.947 | 376 | 19 | 0 | 1 | 376 | 1 | 376 | 0.0 | 702 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0005050 | Msa0538060 | 0.802811 | 4.698626e-49 | -8.615850e-47 |
| Msa0018220 | Msa0538060 | 0.800036 | 1.740237e-48 | -8.615850e-47 |
| Msa0036430 | Msa0538060 | 0.829983 | 3.793011e-55 | -8.615850e-47 |
| Msa0048200 | Msa0538060 | 0.803139 | 4.019850e-49 | -8.615850e-47 |
| Msa0050040 | Msa0538060 | 0.807860 | 4.112447e-50 | -8.615850e-47 |
| Msa0052460 | Msa0538060 | 0.804101 | 2.539020e-49 | -8.615850e-47 |
| Msa0053110 | Msa0538060 | 0.807036 | 6.150283e-50 | -8.615850e-47 |
| Msa0084500 | Msa0538060 | 0.814736 | 1.323826e-51 | -8.615850e-47 |
| Msa0098440 | Msa0538060 | 0.803863 | 2.845446e-49 | -8.615850e-47 |
| Msa0102990 | Msa0538060 | 0.808131 | 3.600503e-50 | -8.615850e-47 |
| Msa0105340 | Msa0538060 | 0.816557 | 5.200748e-52 | -8.615850e-47 |
| Msa0130010 | Msa0538060 | 0.818363 | 2.038038e-52 | -8.615850e-47 |
| Msa0130570 | Msa0538060 | 0.812912 | 3.339731e-51 | -8.615850e-47 |
| Msa0161100 | Msa0538060 | 0.806071 | 9.830588e-50 | -8.615850e-47 |
| Msa0184990 | Msa0538060 | 0.803901 | 2.794462e-49 | -8.615850e-47 |
| Msa0203030 | Msa0538060 | 0.800696 | 1.276676e-48 | -8.615850e-47 |
| Msa0219190 | Msa0538060 | 0.844149 | 9.037426e-59 | -8.615850e-47 |
| Msa0371540 | Msa0538060 | 0.821030 | 5.015282e-53 | -8.615850e-47 |
| Msa0378340 | Msa0538060 | 0.826964 | 2.031716e-54 | -8.615850e-47 |
| Msa0413930 | Msa0538060 | 0.813369 | 2.650412e-51 | -8.615850e-47 |
| Msa0427690 | Msa0538060 | 0.827542 | 1.477047e-54 | -8.615850e-47 |
| Msa0430820 | Msa0538060 | 0.823663 | 1.227131e-53 | -8.615850e-47 |
| Msa0436500 | Msa0538060 | 0.827045 | 1.943113e-54 | -8.615850e-47 |
| Msa0466060 | Msa0538060 | 0.819467 | 1.143556e-52 | -8.615850e-47 |
| Msa0238890 | Msa0538060 | 0.806943 | 6.434304e-50 | -8.615850e-47 |
| Msa0260970 | Msa0538060 | 0.813338 | 2.693040e-51 | -8.615850e-47 |
| Msa0298240 | Msa0538060 | 0.845433 | 4.073843e-59 | -8.615850e-47 |
| Msa0308830 | Msa0538060 | 0.824205 | 9.158726e-54 | -8.615850e-47 |
| Msa0315480 | Msa0538060 | 0.804473 | 2.124670e-49 | -8.615850e-47 |
| Msa0517340 | Msa0538060 | 0.820161 | 7.940909e-53 | -8.615850e-47 |
| Msa0518520 | Msa0538060 | 0.826263 | 2.986330e-54 | -8.615850e-47 |
| Msa0535040 | Msa0538060 | 0.812236 | 4.692737e-51 | -8.615850e-47 |
| Msa0537920 | Msa0538060 | 0.811919 | 5.502303e-51 | -8.615850e-47 |
| Msa0538060 | Msa0538220 | 0.809665 | 1.690925e-50 | -8.615850e-47 |
| Msa0538060 | Msa0543850 | 0.828195 | 1.028752e-54 | -8.615850e-47 |
| Msa0538060 | Msa0575250 | 0.801466 | 8.886823e-49 | -8.615850e-47 |
| Msa0538060 | Msa0585730 | 0.954487 | 2.649906e-112 | -8.615850e-47 |
| Msa0538060 | Msa0625890 | 0.914907 | 1.104084e-84 | -8.615850e-47 |
| Msa0538060 | Msa0642910 | 0.810579 | 1.074365e-50 | -8.615850e-47 |
| Msa0538060 | Msa0645050 | 0.818622 | 1.780579e-52 | -8.615850e-47 |
| Msa0538060 | Msa0663590 | 0.900637 | 6.004093e-78 | -8.615850e-47 |
| Msa0538060 | Msa0663680 | 0.919478 | 4.280420e-87 | -8.615850e-47 |
| Msa0538060 | Msa0666210 | 0.806449 | 8.180174e-50 | -8.615850e-47 |
| Msa0538060 | Msa0678890 | 0.840971 | 6.302876e-58 | -8.615850e-47 |
| Msa0538060 | Msa0680150 | 0.814675 | 1.365167e-51 | -8.615850e-47 |
| Msa0538060 | Msa0684530 | 0.812195 | 4.791097e-51 | -8.615850e-47 |
| Msa0538060 | Msa0688500 | 0.805459 | 1.321728e-49 | -8.615850e-47 |
| Msa0538060 | Msa0691160 | 0.849234 | 3.685067e-60 | -8.615850e-47 |
| Msa0538060 | Msa0707220 | 0.806255 | 8.989460e-50 | -8.615850e-47 |
| Msa0538060 | Msa0716760 | 0.802130 | 6.490527e-49 | -8.615850e-47 |
| Msa0538060 | Msa0720040 | 0.848641 | 5.385136e-60 | -8.615850e-47 |
| Msa0538060 | Msa0737190 | 0.807118 | 5.909165e-50 | -8.615850e-47 |
| Msa0538060 | Msa0741900 | 0.822713 | 2.044449e-53 | -8.615850e-47 |
| Msa0538060 | Msa0747780 | 0.808459 | 3.064726e-50 | -8.615850e-47 |
| Msa0538060 | Msa0754030 | 0.803794 | 2.941406e-49 | -8.615850e-47 |
| Msa0538060 | Msa0761580 | 0.817913 | 2.576714e-52 | -8.615850e-47 |
| Msa0538060 | Msa0802840 | 0.808838 | 2.543856e-50 | -8.615850e-47 |
| Msa0538060 | Msa0807110 | 0.802401 | 5.709152e-49 | -8.615850e-47 |
| Msa0538060 | Msa0816450 | 0.804026 | 2.631322e-49 | -8.615850e-47 |
| Msa0538060 | Msa0820670 | 0.806961 | 6.377430e-50 | -8.615850e-47 |
| Msa0538060 | Msa0822990 | 0.825847 | 3.750204e-54 | -8.615850e-47 |
| Msa0538060 | Msa0833040 | 0.800298 | 1.539259e-48 | -8.615850e-47 |
| Msa0538060 | Msa0840500 | 0.811588 | 6.493545e-51 | -8.615850e-47 |
| Msa0538060 | Msa0862100 | 0.859047 | 5.419499e-63 | -8.615850e-47 |
| Msa0538060 | Msa0867350 | 0.814226 | 1.715766e-51 | -8.615850e-47 |
| Msa0538060 | Msa0872310 | 0.832123 | 1.131183e-55 | -8.615850e-47 |
| Msa0538060 | Msa0873190 | 0.835429 | 1.686849e-56 | -8.615850e-47 |
| Msa0538060 | Msa0885060 | 0.815057 | 1.123190e-51 | -8.615850e-47 |
| Msa0538060 | Msa0898730 | 0.802505 | 5.434525e-49 | -8.615850e-47 |
| Msa0538060 | Msa0905550 | 0.829929 | 3.908787e-55 | -8.615850e-47 |
| Msa0538060 | Msa0908050 | 0.809733 | 1.634913e-50 | -8.615850e-47 |
| Msa0538060 | Msa0937550 | 0.817745 | 2.811226e-52 | -8.615850e-47 |
| Msa0538060 | Msa0938430 | 0.818518 | 1.879792e-52 | -8.615850e-47 |
| Msa0538060 | Msa0941960 | 0.807700 | 4.445964e-50 | -8.615850e-47 |
| Msa0538060 | Msa0951460 | 0.801178 | 1.017958e-48 | -8.615850e-47 |
| Msa0538060 | Msa0951710 | 0.822289 | 2.564868e-53 | -8.615850e-47 |
| Msa0538060 | Msa0951960 | 0.811729 | 6.051480e-51 | -8.615850e-47 |
| Msa0538060 | Msa0975580 | 0.805745 | 1.151065e-49 | -8.615850e-47 |
| Msa0538060 | Msa1009000 | 0.826844 | 2.169902e-54 | -8.615850e-47 |
| Msa0538060 | Msa1012810 | 0.800376 | 1.483696e-48 | -8.615850e-47 |
| Msa0538060 | Msa1014270 | 0.829958 | 3.846968e-55 | -8.615850e-47 |
| Msa0538060 | Msa1032450 | 0.816576 | 5.150363e-52 | -8.615850e-47 |
| Msa0538060 | Msa1033560 | 0.808351 | 3.231491e-50 | -8.615850e-47 |
| Msa0538060 | Msa1037910 | 0.803465 | 3.441009e-49 | -8.615850e-47 |
| Msa0538060 | Msa1041530 | 0.823297 | 1.494529e-53 | -8.615850e-47 |
| Msa0538060 | Msa1042670 | 0.819669 | 1.028453e-52 | -8.615850e-47 |
| Msa0538060 | Msa1048710 | 0.808376 | 3.192097e-50 | -8.615850e-47 |
| Msa0538060 | Msa1055260 | 0.815665 | 8.227082e-52 | -8.615850e-47 |
| Msa0538060 | Msa1055280 | 0.818684 | 1.723898e-52 | -8.615850e-47 |
| Msa0538060 | Msa1061500 | 0.813294 | 2.752644e-51 | -8.615850e-47 |
| Msa0538060 | Msa1078710 | 0.803953 | 2.725786e-49 | -8.615850e-47 |
| Msa0538060 | Msa1081570 | 0.833727 | 4.515818e-56 | -8.615850e-47 |
| Msa0538060 | Msa1098560 | 0.832186 | 1.091042e-55 | -8.615850e-47 |
| Msa0538060 | Msa1106810 | 0.827209 | 1.774774e-54 | -8.615850e-47 |
| Msa0538060 | Msa1113850 | 0.802563 | 5.286393e-49 | -8.615850e-47 |
| Msa0538060 | Msa1123880 | 0.819926 | 8.987140e-53 | -8.615850e-47 |
| Msa0538060 | Msa1127140 | 0.833827 | 4.264443e-56 | -8.615850e-47 |
| Msa0538060 | Msa1129960 | 0.814568 | 1.441743e-51 | -8.615850e-47 |
| Msa0538060 | Msa1129970 | 0.807868 | 4.095400e-50 | -8.615850e-47 |
| Msa0538060 | Msa1133710 | 0.806968 | 6.358381e-50 | -8.615850e-47 |
| Msa0538060 | Msa1145020 | 0.805905 | 1.065167e-49 | -8.615850e-47 |
| Msa0538060 | Msa1166400 | 0.827480 | 1.528519e-54 | -8.615850e-47 |
| Msa0538060 | Msa1169990 | 0.833186 | 6.163381e-56 | -8.615850e-47 |
| Msa0538060 | Msa1176160 | 0.805526 | 1.279039e-49 | -8.615850e-47 |
| Msa0538060 | Msa1201990 | 0.802431 | 5.629671e-49 | -8.615850e-47 |
| Msa0538060 | Msa1221560 | 0.824121 | 9.583133e-54 | -8.615850e-47 |
| Msa0538060 | Msa1228610 | 0.900767 | 5.268646e-78 | -8.615850e-47 |
| Msa0538060 | Msa1305750 | 0.800662 | 1.297436e-48 | -8.615850e-47 |
| Msa0538060 | Msa1307190 | 0.801376 | 9.272587e-49 | -8.615850e-47 |
| Msa0538060 | Msa1350670 | 0.812365 | 4.397559e-51 | -8.615850e-47 |
| Msa0538060 | Msa1382720 | 0.812444 | 4.227579e-51 | -8.615850e-47 |
| Msa0538060 | Msa1408870 | 0.802467 | 5.533216e-49 | -8.615850e-47 |
| Msa0538060 | Msa1414930 | 0.807598 | 4.675514e-50 | -8.615850e-47 |
| Msa0538060 | Msa1420060 | 0.858493 | 7.930765e-63 | -8.615850e-47 |
| Msa0538060 | Msa1421550 | 0.811149 | 8.089573e-51 | -8.615850e-47 |
| Msa0538060 | Msa1445790 | 0.814799 | 1.281904e-51 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0538060 | MtrunA17_Chr4g0001461 | 82.653 | 392 | 18 | 1 | 35 | 376 | 1 | 392 | 0.0 | 637 |
| Msa0538060 | MtrunA17_Chr2g0333881 | 72.832 | 346 | 94 | 0 | 31 | 376 | 51 | 396 | 0.0 | 528 |
| Msa0538060 | MtrunA17_Chr5g0396921 | 66.019 | 206 | 51 | 1 | 171 | 376 | 23 | 209 | 6.20e-91 | 272 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0538060 | AT1G62640.2 | 65.979 | 388 | 112 | 4 | 6 | 375 | 18 | 403 | 0.0 | 520 |
| Msa0538060 | AT1G62640.1 | 65.979 | 388 | 112 | 4 | 6 | 375 | 18 | 403 | 0.0 | 520 |
Find 82 sgRNAs with CRISPR-Local
Find 259 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CGTAAACGTCGAGTTCTTTC+AGG | 0.225004 | 4_1:+17159460 | Msa0538060:CDS |
| CATGAATATGAATACTTCTT+TGG | 0.249673 | 4_1:-17161431 | None:intergenic |
| CCACTACATCAATAATTCTT+TGG | 0.266849 | 4_1:-17161742 | None:intergenic |
| ATTATTGCTGCTTCTGGCTT+TGG | 0.274041 | 4_1:+17161893 | Msa0538060:CDS |
| TAATGCATCAGACTCAATTA+AGG | 0.282247 | 4_1:+17161391 | Msa0538060:CDS |
| AGTTAGAAGTGGAAAGATTA+AGG | 0.293816 | 4_1:+17161862 | Msa0538060:CDS |
| GGACAAATTATTGCTGCTTC+TGG | 0.294045 | 4_1:+17161887 | Msa0538060:CDS |
| GCTTTGGTGCTGGTCTTACT+TGG | 0.297418 | 4_1:+17161909 | Msa0538060:CDS |
| TTTCAAAATGTTCTTGTAAT+CGG | 0.300523 | 4_1:+17160771 | Msa0538060:CDS |
| GCATGTAGTGGATTTATCTT+TGG | 0.313034 | 4_1:+17160628 | Msa0538060:CDS |
| TATCAGCTGCTAGTCACATT+AGG | 0.325626 | 4_1:+17160656 | Msa0538060:CDS |
| TGTTGGACTAATTAACAAAA+AGG | 0.327242 | 4_1:-17157725 | None:intergenic |
| ATCAGCTGCTAGTCACATTA+GGG | 0.332459 | 4_1:+17160657 | Msa0538060:CDS |
| ATATCAAATGTGGCTGATTA+TGG | 0.349357 | 4_1:+17161797 | Msa0538060:CDS |
| AGAAGTTCATGTATTCTGTT+TGG | 0.357805 | 4_1:+17160831 | Msa0538060:CDS |
| AGGAAATGGAAGGTGATAAG+AGG | 0.375453 | 4_1:-17157794 | None:intergenic |
| GCTGCTTCTGGCTTTGGTGC+TGG | 0.385323 | 4_1:+17161899 | Msa0538060:CDS |
| GGAAGATGAAGGAGTGAAGT+TGG | 0.386428 | 4_1:-17157771 | None:intergenic |
| CTTTGGTGCTGGTCTTACTT+GGG | 0.392366 | 4_1:+17161910 | Msa0538060:CDS |
| GCAAAGGAGGTTGGGAATCA+TGG | 0.411841 | 4_1:-17157845 | None:intergenic |
| GGGGATAAGGTCTTACTTTG+AGG | 0.412976 | 4_1:+17161951 | Msa0538060:exon |
| CTCTTTCGAGATATATCGAT+TGG | 0.434773 | 4_1:+17160802 | Msa0538060:CDS |
| GGGATAAGGTCTTACTTTGA+GGG | 0.460615 | 4_1:+17161952 | Msa0538060:exon |
| ATACCTTGGCAAAGGAGGTT+GGG | 0.472067 | 4_1:-17157853 | None:intergenic |
| GAATATGAATACTTCTTTGG+AGG | 0.473078 | 4_1:-17161428 | None:intergenic |
| TAGTTGATACTTCTGATGAA+TGG | 0.482232 | 4_1:+17159416 | Msa0538060:CDS |
| GTATATCACTTGAAAACATA+AGG | 0.488538 | 4_1:-17162001 | None:intergenic |
| TGCTGCCTCTACTGATAAAG+TGG | 0.490848 | 4_1:-17160210 | None:intergenic |
| AATGCATCAGACTCAATTAA+GGG | 0.492850 | 4_1:+17161392 | Msa0538060:CDS |
| GTGATAAGAGGGGAAGATGA+AGG | 0.493811 | 4_1:-17157782 | None:intergenic |
| GCTGTAATGTTATAAGCTGC+TGG | 0.494699 | 4_1:-17160604 | None:intergenic |
| TAGATGAACACACCAAGATT+AGG | 0.495759 | 4_1:-17160277 | None:intergenic |
| CATAGTTTAGCATAACACTT+TGG | 0.499298 | 4_1:+17157670 | Msa0538060:five_prime_UTR |
| TGACTGGTTACTTCTCCATC+AGG | 0.499458 | 4_1:+17161556 | Msa0538060:CDS |
| AGTGCTGACTCAATTGACTT+TGG | 0.500820 | 4_1:-17161503 | None:intergenic |
| AGAAGTGGAAAGATTAAGGA+AGG | 0.501824 | 4_1:+17161866 | Msa0538060:CDS |
| CCAAAGAATTATTGATGTAG+TGG | 0.502244 | 4_1:+17161742 | Msa0538060:CDS |
| TACCTGCATCCAGCATTGAC+TGG | 0.503751 | 4_1:+17161540 | Msa0538060:CDS |
| TTTCAGATTTCAAAACAGCT+TGG | 0.504851 | 4_1:+17160568 | Msa0538060:intron |
| AATTGAGTCAGCACTTCAAA+AGG | 0.505835 | 4_1:+17161511 | Msa0538060:CDS |
| CATACCTTGGCAAAGGAGGT+TGG | 0.506757 | 4_1:-17157854 | None:intergenic |
| AATGCAGCATATAAAGAAGA+AGG | 0.507598 | 4_1:+17161362 | Msa0538060:CDS |
| GAGAAGTAACCAGTCAATGC+TGG | 0.509382 | 4_1:-17161549 | None:intergenic |
| TTTGGTGCTGGTCTTACTTG+GGG | 0.514017 | 4_1:+17161911 | Msa0538060:CDS |
| GGAAATGGAAGGTGATAAGA+GGG | 0.514373 | 4_1:-17157793 | None:intergenic |
| AACCAGTCAATGCTGGATGC+AGG | 0.515256 | 4_1:-17161542 | None:intergenic |
| AGACTCAATTAAGGGTGAGT+TGG | 0.516652 | 4_1:+17161400 | Msa0538060:CDS |
| TATTCATGCATACATATGAA+TGG | 0.524043 | 4_1:+17161446 | Msa0538060:CDS |
| AAGTGCAGCTTCCATTCCAT+TGG | 0.525636 | 4_1:+17161826 | Msa0538060:CDS |
| GGCTGCAAGCTGGTAGGATG+TGG | 0.526765 | 4_1:+17159346 | Msa0538060:CDS |
| CTTTGCAGACTTGTTAGTCA+AGG | 0.528713 | 4_1:+17159325 | Msa0538060:intron |
| AACTCGACGTTTACGAATCC+CGG | 0.530634 | 4_1:-17159452 | None:intergenic |
| AACATTACAGCTGCATGTAG+TGG | 0.532984 | 4_1:+17160616 | Msa0538060:CDS |
| ATTCTGTTTGGAGATGCTGC+TGG | 0.537982 | 4_1:+17160843 | Msa0538060:CDS |
| GAGATGGCAAAGGTTGATCC+AGG | 0.538042 | 4_1:+17160245 | Msa0538060:CDS |
| TGCTGGTGCTGTTCTAGTAC+AGG | 0.539004 | 4_1:+17160860 | Msa0538060:CDS |
| TCATTAGTAATCTCAAGAGT+TGG | 0.547090 | 4_1:-17159379 | None:intergenic |
| GAGTCAGCACTTCAAAAGGC+TGG | 0.548884 | 4_1:+17161515 | Msa0538060:CDS |
| TTAGATGAATCAGTTAGAAG+TGG | 0.549460 | 4_1:+17161851 | Msa0538060:CDS |
| ACTGATTCATCTAAAGCCAA+TGG | 0.554412 | 4_1:-17161842 | None:intergenic |
| TTCATCTAAAGCCAATGGAA+TGG | 0.563272 | 4_1:-17161837 | None:intergenic |
| CTTGACCACTTTATCAGTAG+AGG | 0.564880 | 4_1:+17160205 | Msa0538060:CDS |
| AATGGATAAGTGTTCGCACC+GGG | 0.577062 | 4_1:+17159434 | Msa0538060:CDS |
| AGGTGATGTTGACCTAATCT+TGG | 0.581165 | 4_1:+17160265 | Msa0538060:CDS |
| GAATGGATAAGTGTTCGCAC+CGG | 0.581811 | 4_1:+17159433 | Msa0538060:CDS |
| AAGACATACCTTGGCAAAGG+AGG | 0.582045 | 4_1:-17157858 | None:intergenic |
| ATGCAGCATATAAAGAAGAA+GGG | 0.586575 | 4_1:+17161363 | Msa0538060:CDS |
| CTTTATCAGTAGAGGCAGCA+AGG | 0.593587 | 4_1:+17160213 | Msa0538060:CDS |
| TGTTAGTCAAGGCTGCAAGC+TGG | 0.594953 | 4_1:+17159336 | Msa0538060:CDS |
| TCTAAGACATACCTTGGCAA+AGG | 0.596664 | 4_1:-17157861 | None:intergenic |
| AGTCAAGGCTGCAAGCTGGT+AGG | 0.597236 | 4_1:+17159340 | Msa0538060:CDS |
| AAGATTAGGTCAACATCACC+TGG | 0.602574 | 4_1:-17160263 | None:intergenic |
| TGCAGCATATAAAGAAGAAG+GGG | 0.606045 | 4_1:+17161364 | Msa0538060:CDS |
| ATTCCCAACCTCCTTTGCCA+AGG | 0.606866 | 4_1:+17157850 | Msa0538060:CDS |
| CAGAATACATGAACTTCTGT+CGG | 0.609245 | 4_1:-17160826 | None:intergenic |
| AGCAAGGAAAGCTCTTGAGA+TGG | 0.614431 | 4_1:+17160229 | Msa0538060:CDS |
| GATTTGAATAGTGATGGTGA+TGG | 0.616422 | 4_1:+17161108 | Msa0538060:CDS |
| TCAGCTGCTAGTCACATTAG+GGG | 0.630404 | 4_1:+17160658 | Msa0538060:CDS |
| GAAAGCTCTTGAGATGGCAA+AGG | 0.633878 | 4_1:+17160235 | Msa0538060:CDS |
| GTTGGTAGATACATTGACCA+TGG | 0.637541 | 4_1:-17157753 | None:intergenic |
| GAAATGGAAGGTGATAAGAG+GGG | 0.692819 | 4_1:-17157792 | None:intergenic |
| ATTGCAGGCGTGCAACTACG+AGG | 0.723991 | 4_1:+17161065 | Msa0538060:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TAATAAGATAATAATATTTC+GGG | + | chr4_1:17158461-17158480 | Msa0538060:intron | 10.0% |
| !!! | TATTAATTTATGATTTTCTT+GGG | - | chr4_1:17158509-17158528 | None:intergenic | 10.0% |
| !!! | TTATTAATTTATGATTTTCT+TGG | - | chr4_1:17158510-17158529 | None:intergenic | 10.0% |
| !! | TATATTGATAAAAGATTAAT+AGG | + | chr4_1:17158850-17158869 | Msa0538060:intron | 10.0% |
| !! | GATTAAAAAAAATTAAAATC+AGG | + | chr4_1:17159255-17159274 | Msa0538060:intron | 10.0% |
| !!! | CTTTTTACTTATATAAAAAT+TGG | - | chr4_1:17160386-17160405 | None:intergenic | 10.0% |
| !! | AAAAATTATTTACAACATTT+AGG | - | chr4_1:17160726-17160745 | None:intergenic | 10.0% |
| !!! | TTAATCATAAAAAAAAGTTT+TGG | - | chr4_1:17161618-17161637 | None:intergenic | 10.0% |
| !! | TAATCAAATATATTACTATA+TGG | - | chr4_1:17161658-17161677 | None:intergenic | 10.0% |
| !! | ATATAGTAATATATTTGATT+AGG | + | chr4_1:17161657-17161676 | Msa0538060:intron | 10.0% |
| !! | TATAGTAATATATTTGATTA+GGG | + | chr4_1:17161658-17161677 | Msa0538060:intron | 10.0% |
| !!! | TTCATTTTATATTATACACT+AGG | + | chr4_1:17157913-17157932 | Msa0538060:intron | 15.0% |
| !!! | ATTATTTGTTATAAGATGTA+AGG | - | chr4_1:17158068-17158087 | None:intergenic | 15.0% |
| !!! | AAACTCTTTAATTTAATACT+CGG | + | chr4_1:17158357-17158376 | Msa0538060:intron | 15.0% |
| !!! | TCTAAAATAATAAATTTGTC+CGG | + | chr4_1:17158395-17158414 | Msa0538060:intron | 15.0% |
| !! | TCTAAATTAATAAATTTCTG+CGG | + | chr4_1:17158794-17158813 | Msa0538060:intron | 15.0% |
| !! | CTCTATAAATTAATAATTTC+AGG | - | chr4_1:17158821-17158840 | None:intergenic | 15.0% |
| !! | AAGAAAAAAAAAATGTAGTT+TGG | - | chr4_1:17159796-17159815 | None:intergenic | 15.0% |
| !!! | AAGTAAAAAGTACATATATA+TGG | + | chr4_1:17160396-17160415 | Msa0538060:intron | 15.0% |
| !!! | TATTTTCATTGAGATTTAAA+TGG | + | chr4_1:17160991-17161010 | Msa0538060:intron | 15.0% |
| !!! | AATTTAGGGAAATTTATTTT+TGG | - | chr4_1:17161588-17161607 | None:intergenic | 15.0% |
| !! | ATAACTAAATTATGGTTAGT+TGG | - | chr4_1:17158942-17158961 | None:intergenic | 20.0% |
| !!! | GTTAGTTGATAACTAAATTA+TGG | - | chr4_1:17158950-17158969 | None:intergenic | 20.0% |
| !! | ATTTAGTTATCAACTAACTA+TGG | + | chr4_1:17158952-17158971 | Msa0538060:intron | 20.0% |
| !! | CTATTCATTATAAACAAATG+TGG | + | chr4_1:17158990-17159009 | Msa0538060:intron | 20.0% |
| !! | TGTAATAAAAAAAATTGCAC+AGG | - | chr4_1:17159187-17159206 | None:intergenic | 20.0% |
| !!! | AAATTGTTTTGAGATATTGT+TGG | + | chr4_1:17159608-17159627 | Msa0538060:intron | 20.0% |
| !!! | ATCAGTTGATAATATAAGTT+TGG | - | chr4_1:17159853-17159872 | None:intergenic | 20.0% |
| !!! | TAATAGTTCAGTTTAGTTTT+CGG | + | chr4_1:17159938-17159957 | Msa0538060:intron | 20.0% |
| !!! | TTCACATTTTCATCTAATAT+GGG | - | chr4_1:17160003-17160022 | None:intergenic | 20.0% |
| !!! | ATTCACATTTTCATCTAATA+TGG | - | chr4_1:17160004-17160023 | None:intergenic | 20.0% |
| !! | TATATATCCAATGTCTTATA+AGG | + | chr4_1:17160051-17160070 | Msa0538060:intron | 20.0% |
| !!! | GGTTTTTTATATAAGCAAAA+AGG | - | chr4_1:17160431-17160450 | None:intergenic | 20.0% |
| !!! | TTTTGCTTATATAAAAAACC+AGG | + | chr4_1:17160431-17160450 | Msa0538060:intron | 20.0% |
| !!! | AGTTACTTTTTGTTGAATTA+AGG | + | chr4_1:17160689-17160708 | Msa0538060:intron | 20.0% |
| !!! | TTTTTTCATTTTATGAATGC+AGG | + | chr4_1:17160741-17160760 | Msa0538060:intron | 20.0% |
| !! | TTTCAAAATGTTCTTGTAAT+CGG | + | chr4_1:17160771-17160790 | Msa0538060:CDS | 20.0% |
| !! | ATATATTTGATTAGGGAAAA+AGG | + | chr4_1:17161665-17161684 | Msa0538060:intron | 20.0% |
| !! | TAAATACTGAATTATTAGCA+TGG | - | chr4_1:17161700-17161719 | None:intergenic | 20.0% |
| !!! | ATTTACTTGTTGATAAATGT+AGG | + | chr4_1:17161715-17161734 | Msa0538060:intron | 20.0% |
| ! | TGTTGGACTAATTAACAAAA+AGG | - | chr4_1:17157728-17157747 | None:intergenic | 25.0% |
| !!! | CACTAGGTTTTAATAAGTTA+TGG | + | chr4_1:17157929-17157948 | Msa0538060:intron | 25.0% |
| !! | TTGATAACTGTTACAAATCA+TGG | + | chr4_1:17158228-17158247 | Msa0538060:intron | 25.0% |
| ! | TTAATATGACATTTATCCCT+GGG | - | chr4_1:17158257-17158276 | None:intergenic | 25.0% |
| ! | ATTAATATGACATTTATCCC+TGG | - | chr4_1:17158258-17158277 | None:intergenic | 25.0% |
| ! | TTGGGACTGAAAATTATAAA+GGG | - | chr4_1:17158491-17158510 | None:intergenic | 25.0% |
| ! | ACTATTGTGTTCATATGTAT+TGG | - | chr4_1:17158627-17158646 | None:intergenic | 25.0% |
| !! | AAGATTAATAGGAAGTACAA+TGG | + | chr4_1:17158861-17158880 | Msa0538060:intron | 25.0% |
| ! | AATAAAAAAAATTGCACAGG+AGG | - | chr4_1:17159184-17159203 | None:intergenic | 25.0% |
| ! | TAAAATATGGTTCCAAGTTA+TGG | - | chr4_1:17159282-17159301 | None:intergenic | 25.0% |
| !!! | CTGTAACAAACTCTAAAATA+TGG | - | chr4_1:17159295-17159314 | None:intergenic | 25.0% |
| ! | CGTAAACATCATAAATAGAA+TGG | + | chr4_1:17159505-17159524 | Msa0538060:intron | 25.0% |
| !!! | TGAATTGAATTTGGCTTTTA+TGG | + | chr4_1:17159535-17159554 | Msa0538060:intron | 25.0% |
| ! | CAATTTCTTCTACATACTTA+TGG | - | chr4_1:17159594-17159613 | None:intergenic | 25.0% |
| !! | ATTCTGTTTTCAATTGTTGA+TGG | + | chr4_1:17159638-17159657 | Msa0538060:intron | 25.0% |
| !! | TTCTGTTTTCAATTGTTGAT+GGG | + | chr4_1:17159639-17159658 | Msa0538060:intron | 25.0% |
| ! | ATCCTCATTATTACACTAAT+AGG | - | chr4_1:17159665-17159684 | None:intergenic | 25.0% |
| ! | AAATTGAACCAAATCGTTAA+TGG | + | chr4_1:17159737-17159756 | Msa0538060:intron | 25.0% |
| !! | GTTTTCTCTAAATATAGTTC+TGG | - | chr4_1:17159774-17159793 | None:intergenic | 25.0% |
| !!! | AATAGTTCAGTTTAGTTTTC+GGG | + | chr4_1:17159939-17159958 | Msa0538060:intron | 25.0% |
| ! | TCTTACTCACATTTATTACT+AGG | - | chr4_1:17159977-17159996 | None:intergenic | 25.0% |
| !! | TTGATTTTGCTTGATGTTTA+TGG | + | chr4_1:17160166-17160185 | Msa0538060:intron | 25.0% |
| ! | TATGATGAAAACCATAAACA+TGG | - | chr4_1:17160934-17160953 | None:intergenic | 25.0% |
| !! | TGGTTTTCATCATAGTAAAT+AGG | + | chr4_1:17160940-17160959 | Msa0538060:intron | 25.0% |
| !! | GGTTTTCATCATAGTAAATA+GGG | + | chr4_1:17160941-17160960 | Msa0538060:intron | 25.0% |
| ! | GTTATATATGTTTACATTGC+AGG | + | chr4_1:17161050-17161069 | Msa0538060:intron | 25.0% |
| !!! | AGTTTTGATTTGAATAGTGA+TGG | + | chr4_1:17161102-17161121 | Msa0538060:CDS | 25.0% |
| ! | TTAATGTAATCACATATCAC+CGG | - | chr4_1:17161190-17161209 | None:intergenic | 25.0% |
| ! | CATGAATATGAATACTTCTT+TGG | - | chr4_1:17161434-17161453 | None:intergenic | 25.0% |
| ! | TATTCATGCATACATATGAA+TGG | + | chr4_1:17161446-17161465 | Msa0538060:CDS | 25.0% |
| !!! | GTTTTGGTCACTTAAATTTA+GGG | - | chr4_1:17161602-17161621 | None:intergenic | 25.0% |
| !!! | AGTTTTGGTCACTTAAATTT+AGG | - | chr4_1:17161603-17161622 | None:intergenic | 25.0% |
| !!! | CTATATGGTATATCACTTTT+AGG | - | chr4_1:17161643-17161662 | None:intergenic | 25.0% |
| !!! | ACATTTGATATCACTTTTTC+TGG | - | chr4_1:17161788-17161807 | None:intergenic | 25.0% |
| ! | AGAAAAAGTGATATCAAATG+TGG | + | chr4_1:17161787-17161806 | Msa0538060:CDS | 25.0% |
| ! | GTATATCACTTGAAAACATA+AGG | - | chr4_1:17162004-17162023 | None:intergenic | 25.0% |
| CATAGTTTAGCATAACACTT+TGG | + | chr4_1:17157670-17157689 | Msa0538060:five_prime_UTR | 30.0% | |
| ! | ATTAGTCCAACATTTTTCCA+TGG | + | chr4_1:17157736-17157755 | Msa0538060:five_prime_UTR | 30.0% |
| ! | ACTAAAGCAAACAAGTTTTG+AGG | - | chr4_1:17157817-17157836 | None:intergenic | 30.0% |
| !! | AGAAATTCTAAGACATACCT+TGG | - | chr4_1:17157870-17157889 | None:intergenic | 30.0% |
| TGTTATAAGATGTAAGGTGT+GGG | - | chr4_1:17158062-17158081 | None:intergenic | 30.0% | |
| TTGTTATAAGATGTAAGGTG+TGG | - | chr4_1:17158063-17158082 | None:intergenic | 30.0% | |
| GAGATAAAAATTCGTCTCAT+AGG | - | chr4_1:17158170-17158189 | None:intergenic | 30.0% | |
| ACTTTACTATGAGTCTCTAT+GGG | - | chr4_1:17158324-17158343 | None:intergenic | 30.0% | |
| !!! | TTTTTTACATTGTCCCAAGT+CGG | - | chr4_1:17158423-17158442 | None:intergenic | 30.0% |
| CTTGGGACTGAAAATTATAA+AGG | - | chr4_1:17158492-17158511 | None:intergenic | 30.0% | |
| GTACAGTAAATGTAAACAAG+AGG | - | chr4_1:17158583-17158602 | None:intergenic | 30.0% | |
| !! | GACTAATTTGCCTTTTTGTT+TGG | + | chr4_1:17158701-17158720 | Msa0538060:intron | 30.0% |
| !! | AATTTGCCTTTTTGTTTGGT+AGG | + | chr4_1:17158705-17158724 | Msa0538060:intron | 30.0% |
| CAATGGTGAGAGTTATTTAT+AGG | + | chr4_1:17158878-17158897 | Msa0538060:intron | 30.0% | |
| ! | CTAAATTATGGTTAGTTGGT+AGG | - | chr4_1:17158938-17158957 | None:intergenic | 30.0% |
| GATGCATGTAAATGAAATTG+TGG | + | chr4_1:17159015-17159034 | Msa0538060:intron | 30.0% | |
| CATGTAAATGAAATTGTGGT+TGG | + | chr4_1:17159019-17159038 | Msa0538060:intron | 30.0% | |
| ! | CCTCAATATTAAGGTTTTTG+AGG | - | chr4_1:17159061-17159080 | None:intergenic | 30.0% |
| CCTCAAAAACCTTAATATTG+AGG | + | chr4_1:17159058-17159077 | Msa0538060:intron | 30.0% | |
| ATTTAACATAATAGTCGCCT+TGG | - | chr4_1:17159117-17159136 | None:intergenic | 30.0% | |
| TCATTAGTAATCTCAAGAGT+TGG | - | chr4_1:17159382-17159401 | None:intergenic | 30.0% | |
| ! | TAGTTGATACTTCTGATGAA+TGG | + | chr4_1:17159416-17159435 | Msa0538060:CDS | 30.0% |
| TCTACATACTTATGGAAACA+TGG | - | chr4_1:17159586-17159605 | None:intergenic | 30.0% | |
| AATGAGGATTGTTCATGATT+CGG | + | chr4_1:17159676-17159695 | Msa0538060:intron | 30.0% | |
| !! | CTAAATATAGTTCTGGTTCA+GGG | - | chr4_1:17159767-17159786 | None:intergenic | 30.0% |
| !! | TCTAAATATAGTTCTGGTTC+AGG | - | chr4_1:17159768-17159787 | None:intergenic | 30.0% |
| CTGAAATGATTCTATGTGAA+CGG | + | chr4_1:17159820-17159839 | Msa0538060:intron | 30.0% | |
| ! | TAAGGTTTCAGGTAAAAATG+TGG | + | chr4_1:17160069-17160088 | Msa0538060:intron | 30.0% |
| AATCAAGTCAAACCTTGTTA+GGG | - | chr4_1:17160152-17160171 | None:intergenic | 30.0% | |
| AAATCAAGTCAAACCTTGTT+AGG | - | chr4_1:17160153-17160172 | None:intergenic | 30.0% | |
| ! | TCTACTTCAGATGATCTTTT+TGG | + | chr4_1:17160296-17160315 | Msa0538060:CDS | 30.0% |
| ! | ATATAAGCAAAAAGGTGCAT+TGG | - | chr4_1:17160423-17160442 | None:intergenic | 30.0% |
| TTTCAGATTTCAAAACAGCT+TGG | + | chr4_1:17160568-17160587 | Msa0538060:intron | 30.0% | |
| AGAAGTTCATGTATTCTGTT+TGG | + | chr4_1:17160831-17160850 | Msa0538060:CDS | 30.0% | |
| AATGCAGCATATAAAGAAGA+AGG | + | chr4_1:17161362-17161381 | Msa0538060:CDS | 30.0% | |
| ATGCAGCATATAAAGAAGAA+GGG | + | chr4_1:17161363-17161382 | Msa0538060:CDS | 30.0% | |
| TAATGCATCAGACTCAATTA+AGG | + | chr4_1:17161391-17161410 | Msa0538060:CDS | 30.0% | |
| AATGCATCAGACTCAATTAA+GGG | + | chr4_1:17161392-17161411 | Msa0538060:CDS | 30.0% | |
| GAATATGAATACTTCTTTGG+AGG | - | chr4_1:17161431-17161450 | None:intergenic | 30.0% | |
| ATTTGATTAGGGAAAAAGGT+TGG | + | chr4_1:17161669-17161688 | Msa0538060:intron | 30.0% | |
| CCACTACATCAATAATTCTT+TGG | - | chr4_1:17161745-17161764 | None:intergenic | 30.0% | |
| CCAAAGAATTATTGATGTAG+TGG | + | chr4_1:17161742-17161761 | Msa0538060:CDS | 30.0% | |
| !!! | TTGATATCACTTTTTCTGGA+GGG | - | chr4_1:17161784-17161803 | None:intergenic | 30.0% |
| !!! | TTTGATATCACTTTTTCTGG+AGG | - | chr4_1:17161785-17161804 | None:intergenic | 30.0% |
| ATATCAAATGTGGCTGATTA+TGG | + | chr4_1:17161797-17161816 | Msa0538060:CDS | 30.0% | |
| TTAGATGAATCAGTTAGAAG+TGG | + | chr4_1:17161851-17161870 | Msa0538060:CDS | 30.0% | |
| AGTTAGAAGTGGAAAGATTA+AGG | + | chr4_1:17161862-17161881 | Msa0538060:CDS | 30.0% | |
| CATTGACCATGGAAAAATGT+TGG | - | chr4_1:17157745-17157764 | None:intergenic | 35.0% | |
| !!! | ACAAGTTTTGAGGAAATGGA+AGG | - | chr4_1:17157807-17157826 | None:intergenic | 35.0% |
| !!! | GCAAACAAGTTTTGAGGAAA+TGG | - | chr4_1:17157811-17157830 | None:intergenic | 35.0% |
| !! | GTGTGGGTTGATTACATATT+AGG | - | chr4_1:17158046-17158065 | None:intergenic | 35.0% |
| ATAGAGAGAAAACTCATTCG+AGG | - | chr4_1:17158099-17158118 | None:intergenic | 35.0% | |
| TTACAAATCATGGAATCCCA+GGG | + | chr4_1:17158238-17158257 | Msa0538060:intron | 35.0% | |
| CACTTTACTATGAGTCTCTA+TGG | - | chr4_1:17158325-17158344 | None:intergenic | 35.0% | |
| ! | TTTTTACATTGTCCCAAGTC+GGG | - | chr4_1:17158422-17158441 | None:intergenic | 35.0% |
| CTAATTTACGTTGAGTCTCA+AGG | + | chr4_1:17158649-17158668 | Msa0538060:intron | 35.0% | |
| ACTGTACCTACCAAACAAAA+AGG | - | chr4_1:17158714-17158733 | None:intergenic | 35.0% | |
| !! | TTATGGTTAGTTGGTAGGTT+AGG | - | chr4_1:17158933-17158952 | None:intergenic | 35.0% |
| CAAATGCGACCTCAATATTA+AGG | - | chr4_1:17159070-17159089 | None:intergenic | 35.0% | |
| ! | TTGACGACAATTTAAAGCCA+AGG | + | chr4_1:17159097-17159116 | Msa0538060:intron | 35.0% |
| AAAAAAATTGCACAGGAGGA+AGG | - | chr4_1:17159180-17159199 | None:intergenic | 35.0% | |
| TTAAAATCAGGGCCATAACT+TGG | + | chr4_1:17159267-17159286 | Msa0538060:intron | 35.0% | |
| GGTTACAGCTGAATTGAATT+TGG | + | chr4_1:17159526-17159545 | Msa0538060:intron | 35.0% | |
| !!! | TGAATTTGGCTTTTATGGAG+TGG | + | chr4_1:17159540-17159559 | Msa0538060:intron | 35.0% |
| GGCCTATTAGTGTAATAATG+AGG | + | chr4_1:17159660-17159679 | Msa0538060:intron | 35.0% | |
| ! | AACAGTTCGGTTTTCTTTCT+TGG | - | chr4_1:17159703-17159722 | None:intergenic | 35.0% |
| AGAAAACCGAACTGTTACAA+TGG | + | chr4_1:17159707-17159726 | Msa0538060:intron | 35.0% | |
| ACCAAACCATTGTAACAGTT+CGG | - | chr4_1:17159716-17159735 | None:intergenic | 35.0% | |
| TTGATCAGTTCGTGAACTAT+CGG | + | chr4_1:17159879-17159898 | Msa0538060:intron | 35.0% | |
| CCTGAAACCTTATAAGACAT+TGG | - | chr4_1:17160061-17160080 | None:intergenic | 35.0% | |
| CCAATGTCTTATAAGGTTTC+AGG | + | chr4_1:17160058-17160077 | Msa0538060:intron | 35.0% | |
| ACCAAAGAATCATAACTCTG+GGG | - | chr4_1:17160112-17160131 | None:intergenic | 35.0% | |
| CACCAAAGAATCATAACTCT+GGG | - | chr4_1:17160113-17160132 | None:intergenic | 35.0% | |
| ACACCAAAGAATCATAACTC+TGG | - | chr4_1:17160114-17160133 | None:intergenic | 35.0% | |
| TAGATGAACACACCAAGATT+AGG | - | chr4_1:17160280-17160299 | None:intergenic | 35.0% | |
| CTATAACCAATACTAACCTG+AGG | - | chr4_1:17160329-17160348 | None:intergenic | 35.0% | |
| !! | CTCAGGTTAGTATTGGTTAT+AGG | + | chr4_1:17160327-17160346 | Msa0538060:intron | 35.0% |
| !! | GCATGTAGTGGATTTATCTT+TGG | + | chr4_1:17160628-17160647 | Msa0538060:CDS | 35.0% |
| CTCTTTCGAGATATATCGAT+TGG | + | chr4_1:17160802-17160821 | Msa0538060:CDS | 35.0% | |
| CAGAATACATGAACTTCTGT+CGG | - | chr4_1:17160829-17160848 | None:intergenic | 35.0% | |
| !! | ACTTTTGTTTGTCAACACTG+AGG | - | chr4_1:17160900-17160919 | None:intergenic | 35.0% |
| !! | TCAGTGTTGACAAACAAAAG+TGG | + | chr4_1:17160899-17160918 | Msa0538060:intron | 35.0% |
| GGCTAACTATACCATGTTTA+TGG | + | chr4_1:17160920-17160939 | Msa0538060:intron | 35.0% | |
| ! | GATTTGAATAGTGATGGTGA+TGG | + | chr4_1:17161108-17161127 | Msa0538060:CDS | 35.0% |
| TAGAAATGTCGATACTGCAA+AGG | - | chr4_1:17161154-17161173 | None:intergenic | 35.0% | |
| ! | GTATCGACATTTCTAATCGA+AGG | + | chr4_1:17161159-17161178 | Msa0538060:intron | 35.0% |
| !! | AAGCACTGACACATATACAT+TGG | - | chr4_1:17161266-17161285 | None:intergenic | 35.0% |
| ACCATAGTTTCACTTCATGT+AGG | + | chr4_1:17161333-17161352 | Msa0538060:intron | 35.0% | |
| TGCAGCATATAAAGAAGAAG+GGG | + | chr4_1:17161364-17161383 | Msa0538060:CDS | 35.0% | |
| AATTGAGTCAGCACTTCAAA+AGG | + | chr4_1:17161511-17161530 | Msa0538060:CDS | 35.0% | |
| !!! | TATTTTTGGTCCTTACCTGA+TGG | - | chr4_1:17161574-17161593 | None:intergenic | 35.0% |
| ! | TTCATCTAAAGCCAATGGAA+TGG | - | chr4_1:17161840-17161859 | None:intergenic | 35.0% |
| ! | ACTGATTCATCTAAAGCCAA+TGG | - | chr4_1:17161845-17161864 | None:intergenic | 35.0% |
| AGAAGTGGAAAGATTAAGGA+AGG | + | chr4_1:17161866-17161885 | Msa0538060:CDS | 35.0% | |
| !!! | GGGATCAGCTATTTTTCAAT+GGG | + | chr4_1:17161931-17161950 | Msa0538060:CDS | 35.0% |
| !!! | GGATCAGCTATTTTTCAATG+GGG | + | chr4_1:17161932-17161951 | Msa0538060:CDS | 35.0% |
| !!! | GCTATTTTTCAATGGGGATA+AGG | + | chr4_1:17161938-17161957 | Msa0538060:CDS | 35.0% |
| ! | GTTGGTAGATACATTGACCA+TGG | - | chr4_1:17157756-17157775 | None:intergenic | 40.0% |
| GAAATGGAAGGTGATAAGAG+GGG | - | chr4_1:17157795-17157814 | None:intergenic | 40.0% | |
| GGAAATGGAAGGTGATAAGA+GGG | - | chr4_1:17157796-17157815 | None:intergenic | 40.0% | |
| AGGAAATGGAAGGTGATAAG+AGG | - | chr4_1:17157797-17157816 | None:intergenic | 40.0% | |
| ! | TCTAAGACATACCTTGGCAA+AGG | - | chr4_1:17157864-17157883 | None:intergenic | 40.0% |
| CAATCACAATCGTCATCACT+AGG | + | chr4_1:17158009-17158028 | Msa0538060:intron | 40.0% | |
| GTTACAAATCATGGAATCCC+AGG | + | chr4_1:17158237-17158256 | Msa0538060:intron | 40.0% | |
| !! | AGTGCAGAAGAGTATTCATG+TGG | + | chr4_1:17158292-17158311 | Msa0538060:intron | 40.0% |
| !! | GTGCAGAAGAGTATTCATGT+GGG | + | chr4_1:17158293-17158312 | Msa0538060:intron | 40.0% |
| !! | CTTTGCAGACTTGTTAGTCA+AGG | + | chr4_1:17159325-17159344 | Msa0538060:intron | 40.0% |
| ACCGAACTGTTACAATGGTT+TGG | + | chr4_1:17159712-17159731 | Msa0538060:intron | 40.0% | |
| !! | ATATAGTTCTGGTTCAGGGT+CGG | - | chr4_1:17159763-17159782 | None:intergenic | 40.0% |
| GTGAACTATCGGTCATAGTT+CGG | + | chr4_1:17159890-17159909 | Msa0538060:intron | 40.0% | |
| AGTTTCTCTCTTCCCTAACA+AGG | + | chr4_1:17160137-17160156 | Msa0538060:intron | 40.0% | |
| TGCTTGATGTTTATGGTTGC+AGG | + | chr4_1:17160173-17160192 | Msa0538060:intron | 40.0% | |
| TTGATGTTTATGGTTGCAGG+TGG | + | chr4_1:17160176-17160195 | Msa0538060:intron | 40.0% | |
| CTTGACCACTTTATCAGTAG+AGG | + | chr4_1:17160205-17160224 | Msa0538060:CDS | 40.0% | |
| AAGATTAGGTCAACATCACC+TGG | - | chr4_1:17160266-17160285 | None:intergenic | 40.0% | |
| AGGTGATGTTGACCTAATCT+TGG | + | chr4_1:17160265-17160284 | Msa0538060:CDS | 40.0% | |
| !! | TCAGATGATCTTTTTGGCAC+TGG | + | chr4_1:17160302-17160321 | Msa0538060:CDS | 40.0% |
| AGTTTCTGCAATGTACTTCC+TGG | - | chr4_1:17160452-17160471 | None:intergenic | 40.0% | |
| GCTGTAATGTTATAAGCTGC+TGG | - | chr4_1:17160607-17160626 | None:intergenic | 40.0% | |
| AACATTACAGCTGCATGTAG+TGG | + | chr4_1:17160616-17160635 | Msa0538060:CDS | 40.0% | |
| TATCAGCTGCTAGTCACATT+AGG | + | chr4_1:17160656-17160675 | Msa0538060:CDS | 40.0% | |
| ATCAGCTGCTAGTCACATTA+GGG | + | chr4_1:17160657-17160676 | Msa0538060:CDS | 40.0% | |
| TTGTTTGTCAACACTGAGGA+AGG | - | chr4_1:17160896-17160915 | None:intergenic | 40.0% | |
| ATGTCGATACTGCAAAGGTA+AGG | - | chr4_1:17161149-17161168 | None:intergenic | 40.0% | |
| GCCTACATGAAGTGAAACTA+TGG | - | chr4_1:17161337-17161356 | None:intergenic | 40.0% | |
| AGACTCAATTAAGGGTGAGT+TGG | + | chr4_1:17161400-17161419 | Msa0538060:CDS | 40.0% | |
| !! | AGTGCTGACTCAATTGACTT+TGG | - | chr4_1:17161506-17161525 | None:intergenic | 40.0% |
| ! | GGACAAATTATTGCTGCTTC+TGG | + | chr4_1:17161887-17161906 | Msa0538060:CDS | 40.0% |
| !! | ATTATTGCTGCTTCTGGCTT+TGG | + | chr4_1:17161893-17161912 | Msa0538060:CDS | 40.0% |
| !!! | GGGGATCAGCTATTTTTCAA+TGG | + | chr4_1:17161930-17161949 | Msa0538060:CDS | 40.0% |
| GGGATAAGGTCTTACTTTGA+GGG | + | chr4_1:17161952-17161971 | Msa0538060:exon | 40.0% | |
| GGAAGATGAAGGAGTGAAGT+TGG | - | chr4_1:17157774-17157793 | None:intergenic | 45.0% | |
| GTGATAAGAGGGGAAGATGA+AGG | - | chr4_1:17157785-17157804 | None:intergenic | 45.0% | |
| ATACCTTGGCAAAGGAGGTT+GGG | - | chr4_1:17157856-17157875 | None:intergenic | 45.0% | |
| AAGACATACCTTGGCAAAGG+AGG | - | chr4_1:17157861-17157880 | None:intergenic | 45.0% | |
| CGCTGCAACGTAATTCTAAG+AGG | + | chr4_1:17158674-17158693 | Msa0538060:intron | 45.0% | |
| !! | AGTTGGTAGGTTAGGTGGTT+AGG | - | chr4_1:17158925-17158944 | None:intergenic | 45.0% |
| !! | TGGTTAGTTGGTAGGTTAGG+TGG | - | chr4_1:17158930-17158949 | None:intergenic | 45.0% |
| GAATGGATAAGTGTTCGCAC+CGG | + | chr4_1:17159433-17159452 | Msa0538060:CDS | 45.0% | |
| AATGGATAAGTGTTCGCACC+GGG | + | chr4_1:17159434-17159453 | Msa0538060:CDS | 45.0% | |
| AACTCGACGTTTACGAATCC+CGG | - | chr4_1:17159455-17159474 | None:intergenic | 45.0% | |
| CGTAAACGTCGAGTTCTTTC+AGG | + | chr4_1:17159460-17159479 | Msa0538060:CDS | 45.0% | |
| !! | CTCTTTCGTGCGATTTGGTT+CGG | + | chr4_1:17159913-17159932 | Msa0538060:intron | 45.0% |
| GCCCCAGAGTTATGATTCTT+TGG | + | chr4_1:17160108-17160127 | Msa0538060:intron | 45.0% | |
| TGCTGCCTCTACTGATAAAG+TGG | - | chr4_1:17160213-17160232 | None:intergenic | 45.0% | |
| CTTTATCAGTAGAGGCAGCA+AGG | + | chr4_1:17160213-17160232 | Msa0538060:CDS | 45.0% | |
| AGCAAGGAAAGCTCTTGAGA+TGG | + | chr4_1:17160229-17160248 | Msa0538060:CDS | 45.0% | |
| GAAAGCTCTTGAGATGGCAA+AGG | + | chr4_1:17160235-17160254 | Msa0538060:CDS | 45.0% | |
| ACTGGTCCTCAGGTTAGTAT+TGG | + | chr4_1:17160320-17160339 | Msa0538060:intron | 45.0% | |
| TCAGCTGCTAGTCACATTAG+GGG | + | chr4_1:17160658-17160677 | Msa0538060:CDS | 45.0% | |
| ATTCTGTTTGGAGATGCTGC+TGG | + | chr4_1:17160843-17160862 | Msa0538060:CDS | 45.0% | |
| ! | TTTCTAATCGAAGGCGTGTC+CGG | + | chr4_1:17161168-17161187 | Msa0538060:intron | 45.0% |
| GAGAAGTAACCAGTCAATGC+TGG | - | chr4_1:17161552-17161571 | None:intergenic | 45.0% | |
| ! | TGACTGGTTACTTCTCCATC+AGG | + | chr4_1:17161556-17161575 | Msa0538060:CDS | 45.0% |
| GGTTACTTCTCCATCAGGTA+AGG | + | chr4_1:17161561-17161580 | Msa0538060:intron | 45.0% | |
| AAGTGCAGCTTCCATTCCAT+TGG | + | chr4_1:17161826-17161845 | Msa0538060:CDS | 45.0% | |
| !! | CTTTGGTGCTGGTCTTACTT+GGG | + | chr4_1:17161910-17161929 | Msa0538060:CDS | 45.0% |
| !! | TTTGGTGCTGGTCTTACTTG+GGG | + | chr4_1:17161911-17161930 | Msa0538060:CDS | 45.0% |
| GGGGATAAGGTCTTACTTTG+AGG | + | chr4_1:17161951-17161970 | Msa0538060:exon | 45.0% | |
| !! | ATAATAAGATAATAATATTT+CGG | + | chr4_1:17158460-17158479 | Msa0538060:intron | 5.0% |
| !! | ATTAAAAAAAATTAAAATCA+GGG | + | chr4_1:17159256-17159275 | Msa0538060:intron | 5.0% |
| GCAAAGGAGGTTGGGAATCA+TGG | - | chr4_1:17157848-17157867 | None:intergenic | 50.0% | |
| ATTCCCAACCTCCTTTGCCA+AGG | + | chr4_1:17157850-17157869 | Msa0538060:CDS | 50.0% | |
| CATACCTTGGCAAAGGAGGT+TGG | - | chr4_1:17157857-17157876 | None:intergenic | 50.0% | |
| AAATTTGTCCGGTCCCGACT+TGG | + | chr4_1:17158406-17158425 | Msa0538060:intron | 50.0% | |
| AATTTGTCCGGTCCCGACTT+GGG | + | chr4_1:17158407-17158426 | Msa0538060:intron | 50.0% | |
| TGTTAGTCAAGGCTGCAAGC+TGG | + | chr4_1:17159336-17159355 | Msa0538060:CDS | 50.0% | |
| AGGGTCGGCCATTAACGATT+TGG | - | chr4_1:17159748-17159767 | None:intergenic | 50.0% | |
| TTCGGCTCTTTCGTGCGATT+TGG | + | chr4_1:17159908-17159927 | Msa0538060:intron | 50.0% | |
| ! | GAGATGGCAAAGGTTGATCC+AGG | + | chr4_1:17160245-17160264 | Msa0538060:CDS | 50.0% |
| !!! | TCTTTTTGGCACTGGTCCTC+AGG | + | chr4_1:17160310-17160329 | Msa0538060:CDS | 50.0% |
| !! | TGCTGGTGCTGTTCTAGTAC+AGG | + | chr4_1:17160860-17160879 | Msa0538060:CDS | 50.0% |
| GAGTCAGCACTTCAAAAGGC+TGG | + | chr4_1:17161515-17161534 | Msa0538060:CDS | 50.0% | |
| !! | TACCTGCATCCAGCATTGAC+TGG | + | chr4_1:17161540-17161559 | Msa0538060:CDS | 50.0% |
| AACCAGTCAATGCTGGATGC+AGG | - | chr4_1:17161545-17161564 | None:intergenic | 50.0% | |
| !! | GCTTTGGTGCTGGTCTTACT+TGG | + | chr4_1:17161909-17161928 | Msa0538060:CDS | 50.0% |
| ACATTGTCCCAAGTCGGGAC+CGG | - | chr4_1:17158417-17158436 | None:intergenic | 55.0% | |
| TTGCACAGGAGGAAGGCAAG+CGG | - | chr4_1:17159173-17159192 | None:intergenic | 55.0% | |
| AGTCAAGGCTGCAAGCTGGT+AGG | + | chr4_1:17159340-17159359 | Msa0538060:CDS | 55.0% | |
| ATTGCAGGCGTGCAACTACG+AGG | + | chr4_1:17161065-17161084 | Msa0538060:intron | 55.0% | |
| TGCACAGGAGGAAGGCAAGC+GGG | - | chr4_1:17159172-17159191 | None:intergenic | 60.0% | |
| GGCTGCAAGCTGGTAGGATG+TGG | + | chr4_1:17159346-17159365 | Msa0538060:CDS | 60.0% | |
| !! | GCTGCTTCTGGCTTTGGTGC+TGG | + | chr4_1:17161899-17161918 | Msa0538060:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_1 | gene | 17157647 | 17162090 | 17157647 | ID=Msa0538060;Name=Msa0538060 |
| chr4_1 | mRNA | 17157647 | 17162090 | 17157647 | ID=Msa0538060-mRNA-1;Parent=Msa0538060;Name=Msa0538060-mRNA-1;_AED=0.09;_eAED=0.09;_QI=115|1|1|1|1|1|8|132|376 |
| chr4_1 | exon | 17157647 | 17157871 | 17157647 | ID=Msa0538060-mRNA-1:exon:5074;Parent=Msa0538060-mRNA-1 |
| chr4_1 | exon | 17159333 | 17159481 | 17159333 | ID=Msa0538060-mRNA-1:exon:5075;Parent=Msa0538060-mRNA-1 |
| chr4_1 | exon | 17160195 | 17160331 | 17160195 | ID=Msa0538060-mRNA-1:exon:5076;Parent=Msa0538060-mRNA-1 |
| chr4_1 | exon | 17160574 | 17160679 | 17160574 | ID=Msa0538060-mRNA-1:exon:5077;Parent=Msa0538060-mRNA-1 |
| chr4_1 | exon | 17160763 | 17160881 | 17160763 | ID=Msa0538060-mRNA-1:exon:5078;Parent=Msa0538060-mRNA-1 |
| chr4_1 | exon | 17161072 | 17161136 | 17161072 | ID=Msa0538060-mRNA-1:exon:5079;Parent=Msa0538060-mRNA-1 |
| chr4_1 | exon | 17161355 | 17161577 | 17161355 | ID=Msa0538060-mRNA-1:exon:5080;Parent=Msa0538060-mRNA-1 |
| chr4_1 | exon | 17161737 | 17162090 | 17161737 | ID=Msa0538060-mRNA-1:exon:5081;Parent=Msa0538060-mRNA-1 |
| chr4_1 | five_prime_UTR | 17157647 | 17157761 | 17157647 | ID=Msa0538060-mRNA-1:five_prime_utr;Parent=Msa0538060-mRNA-1 |
| chr4_1 | CDS | 17157762 | 17157871 | 17157762 | ID=Msa0538060-mRNA-1:cds;Parent=Msa0538060-mRNA-1 |
| chr4_1 | CDS | 17159333 | 17159481 | 17159333 | ID=Msa0538060-mRNA-1:cds;Parent=Msa0538060-mRNA-1 |
| chr4_1 | CDS | 17160195 | 17160331 | 17160195 | ID=Msa0538060-mRNA-1:cds;Parent=Msa0538060-mRNA-1 |
| chr4_1 | CDS | 17160574 | 17160679 | 17160574 | ID=Msa0538060-mRNA-1:cds;Parent=Msa0538060-mRNA-1 |
| chr4_1 | CDS | 17160763 | 17160881 | 17160763 | ID=Msa0538060-mRNA-1:cds;Parent=Msa0538060-mRNA-1 |
| chr4_1 | CDS | 17161072 | 17161136 | 17161072 | ID=Msa0538060-mRNA-1:cds;Parent=Msa0538060-mRNA-1 |
| chr4_1 | CDS | 17161355 | 17161577 | 17161355 | ID=Msa0538060-mRNA-1:cds;Parent=Msa0538060-mRNA-1 |
| chr4_1 | CDS | 17161737 | 17161958 | 17161737 | ID=Msa0538060-mRNA-1:cds;Parent=Msa0538060-mRNA-1 |
| chr4_1 | three_prime_UTR | 17161959 | 17162090 | 17161959 | ID=Msa0538060-mRNA-1:three_prime_utr;Parent=Msa0538060-mRNA-1 |
| Gene Sequence |
| Protein sequence |
