Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0740430 | XP_003617106.1 | 97.576 | 165 | 3 | 1 | 1 | 165 | 1 | 164 | 8.79e-113 | 327 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0740430 | sp|O32472|PHAJ_AERCA | 41.221 | 131 | 73 | 2 | 28 | 156 | 6 | 134 | 2.14e-27 | 102 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0740430 | G7K300 | 97.576 | 165 | 3 | 1 | 1 | 165 | 1 | 164 | 4.20e-113 | 327 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0002930 | Msa0740430 | 0.828751 | 7.554768e-55 | -8.615850e-47 |
| Msa0017510 | Msa0740430 | 0.835398 | 1.717352e-56 | -8.615850e-47 |
| Msa0073530 | Msa0740430 | 0.808750 | 2.656836e-50 | -8.615850e-47 |
| Msa0094120 | Msa0740430 | 0.800129 | 1.665505e-48 | -8.615850e-47 |
| Msa0110970 | Msa0740430 | 0.827007 | 1.983953e-54 | -8.615850e-47 |
| Msa0116770 | Msa0740430 | 0.816305 | 5.922303e-52 | -8.615850e-47 |
| Msa0633840 | Msa0740430 | 0.803268 | 3.780407e-49 | -8.615850e-47 |
| Msa0638070 | Msa0740430 | 0.804092 | 2.549367e-49 | -8.615850e-47 |
| Msa0657970 | Msa0740430 | 0.838538 | 2.709721e-57 | -8.615850e-47 |
| Msa0663240 | Msa0740430 | 0.802786 | 4.756211e-49 | -8.615850e-47 |
| Msa0688480 | Msa0740430 | 0.805148 | 1.534986e-49 | -8.615850e-47 |
| Msa0693380 | Msa0740430 | 0.801618 | 8.270239e-49 | -8.615850e-47 |
| Msa0708520 | Msa0740430 | 0.809141 | 2.190500e-50 | -8.615850e-47 |
| Msa0740430 | Msa0743720 | 0.801560 | 8.498341e-49 | -8.615850e-47 |
| Msa0740430 | Msa0745790 | 0.802501 | 5.445069e-49 | -8.615850e-47 |
| Msa0740430 | Msa0756630 | -0.823871 | 1.096875e-53 | -8.615850e-47 |
| Msa0740430 | Msa0769920 | 0.801872 | 7.333694e-49 | -8.615850e-47 |
| Msa0740430 | Msa0796530 | 0.807436 | 5.058832e-50 | -8.615850e-47 |
| Msa0740430 | Msa0824660 | 0.803305 | 3.714462e-49 | -8.615850e-47 |
| Msa0740430 | Msa0824680 | 0.807326 | 5.339699e-50 | -8.615850e-47 |
| Msa0740430 | Msa0829620 | 0.808639 | 2.805240e-50 | -8.615850e-47 |
| Msa0740430 | Msa0850960 | 0.824419 | 8.156885e-54 | -8.615850e-47 |
| Msa0740430 | Msa0867890 | 0.818273 | 2.136747e-52 | -8.615850e-47 |
| Msa0740430 | Msa0871270 | 0.802461 | 5.548721e-49 | -8.615850e-47 |
| Msa0740430 | Msa0880140 | 0.834014 | 3.829136e-56 | -8.615850e-47 |
| Msa0740430 | Msa0918220 | 0.802448 | 5.584568e-49 | -8.615850e-47 |
| Msa0740430 | Msa0938220 | 0.812409 | 4.301287e-51 | -8.615850e-47 |
| Msa0740430 | Msa0952120 | 0.804880 | 1.746380e-49 | -8.615850e-47 |
| Msa0740430 | Msa0953550 | 0.807387 | 5.181296e-50 | -8.615850e-47 |
| Msa0740430 | Msa0954130 | 0.824761 | 6.774396e-54 | -8.615850e-47 |
| Msa0740430 | Msa0954550 | 0.830702 | 2.531243e-55 | -8.615850e-47 |
| Msa0740430 | Msa0969520 | 0.803398 | 3.552491e-49 | -8.615850e-47 |
| Msa0740430 | Msa0990350 | 0.800211 | 1.603167e-48 | -8.615850e-47 |
| Msa0740430 | Msa1014540 | 0.800624 | 1.320843e-48 | -8.615850e-47 |
| Msa0740430 | Msa1075540 | 0.801777 | 7.671472e-49 | -8.615850e-47 |
| Msa0740430 | Msa1082500 | 0.828989 | 6.616389e-55 | -8.615850e-47 |
| Msa0740430 | Msa1085200 | 0.801399 | 9.169370e-49 | -8.615850e-47 |
| Msa0740430 | Msa1104370 | 0.812966 | 3.248621e-51 | -8.615850e-47 |
| Msa0740430 | Msa1147900 | 0.802830 | 4.657568e-49 | -8.615850e-47 |
| Msa0740430 | Msa1182260 | 0.809577 | 1.766530e-50 | -8.615850e-47 |
| Msa0740430 | Msa1222970 | 0.811434 | 7.014137e-51 | -8.615850e-47 |
| Msa0740430 | Msa1238930 | 0.809229 | 2.097473e-50 | -8.615850e-47 |
| Msa0740430 | Msa1264020 | 0.810553 | 1.088772e-50 | -8.615850e-47 |
| Msa0740430 | Msa1283860 | 0.801029 | 1.091801e-48 | -8.615850e-47 |
| Msa0740430 | Msa1308380 | 0.812910 | 3.341651e-51 | -8.615850e-47 |
| Msa0740430 | Msa1340710 | 0.801595 | 8.362314e-49 | -8.615850e-47 |
| Msa0740430 | Msa1343070 | 0.811060 | 8.456862e-51 | -8.615850e-47 |
| Msa0740430 | Msa1348490 | 0.812430 | 4.257433e-51 | -8.615850e-47 |
| Msa0740430 | Msa1359040 | 0.811677 | 6.212551e-51 | -8.615850e-47 |
| Msa0740430 | Msa1367080 | 0.804181 | 2.443599e-49 | -8.615850e-47 |
| Msa0740430 | Msa1409870 | 0.813196 | 2.892975e-51 | -8.615850e-47 |
| Msa0740430 | Msa1411020 | 0.801499 | 8.746635e-49 | -8.615850e-47 |
| Msa0740430 | Msa1416150 | 0.805021 | 1.632300e-49 | -8.615850e-47 |
| Msa0740430 | Msa1427760 | 0.800501 | 1.399206e-48 | -8.615850e-47 |
| Msa0740430 | Msa1438250 | 0.802016 | 6.851319e-49 | -8.615850e-47 |
| Msa0740430 | Msa1460240 | 0.817593 | 3.042048e-52 | -8.615850e-47 |
| Msa0740430 | Msa1466540 | 0.819093 | 1.391505e-52 | -8.615850e-47 |
| Msa0124340 | Msa0740430 | 0.816268 | 6.035383e-52 | -8.615850e-47 |
| Msa0136070 | Msa0740430 | 0.811228 | 7.776567e-51 | -8.615850e-47 |
| Msa0136100 | Msa0740430 | 0.803710 | 3.061548e-49 | -8.615850e-47 |
| Msa0153420 | Msa0740430 | 0.809273 | 2.052678e-50 | -8.615850e-47 |
| Msa0157290 | Msa0740430 | 0.836740 | 7.838703e-57 | -8.615850e-47 |
| Msa0165210 | Msa0740430 | 0.815310 | 9.870887e-52 | -8.615850e-47 |
| Msa0165220 | Msa0740430 | 0.813386 | 2.628084e-51 | -8.615850e-47 |
| Msa0166560 | Msa0740430 | 0.801959 | 7.037742e-49 | -8.615850e-47 |
| Msa0173990 | Msa0740430 | 0.818680 | 1.727380e-52 | -8.615850e-47 |
| Msa0191250 | Msa0740430 | 0.808833 | 2.549887e-50 | -8.615850e-47 |
| Msa0197660 | Msa0740430 | 0.800143 | 1.654930e-48 | -8.615850e-47 |
| Msa0200260 | Msa0740430 | 0.803187 | 3.929362e-49 | -8.615850e-47 |
| Msa0215320 | Msa0740430 | -0.805991 | 1.021896e-49 | -8.615850e-47 |
| Msa0220580 | Msa0740430 | 0.810426 | 1.159430e-50 | -8.615850e-47 |
| Msa0225740 | Msa0740430 | 0.800469 | 1.420237e-48 | -8.615850e-47 |
| Msa0410650 | Msa0740430 | 0.804513 | 2.083590e-49 | -8.615850e-47 |
| Msa0419820 | Msa0740430 | 0.825376 | 4.848997e-54 | -8.615850e-47 |
| Msa0459770 | Msa0740430 | -0.807687 | 4.476337e-50 | -8.615850e-47 |
| Msa0480980 | Msa0740430 | 0.818294 | 2.113365e-52 | -8.615850e-47 |
| Msa0239800 | Msa0740430 | 0.802958 | 4.382911e-49 | -8.615850e-47 |
| Msa0244860 | Msa0740430 | 0.805534 | 1.274526e-49 | -8.615850e-47 |
| Msa0261340 | Msa0740430 | 0.817648 | 2.956821e-52 | -8.615850e-47 |
| Msa0283450 | Msa0740430 | 0.813884 | 2.041453e-51 | -8.615850e-47 |
| Msa0283520 | Msa0740430 | 0.810268 | 1.254116e-50 | -8.615850e-47 |
| Msa0287650 | Msa0740430 | 0.814670 | 1.368924e-51 | -8.615850e-47 |
| Msa0311860 | Msa0740430 | 0.808808 | 2.581496e-50 | -8.615850e-47 |
| Msa0317510 | Msa0740430 | 0.800674 | 1.289881e-48 | -8.615850e-47 |
| Msa0332000 | Msa0740430 | 0.811388 | 7.177995e-51 | -8.615850e-47 |
| Msa0362780 | Msa0740430 | 0.805370 | 1.379584e-49 | -8.615850e-47 |
| Msa0484780 | Msa0740430 | 0.831057 | 2.070942e-55 | -8.615850e-47 |
| Msa0507680 | Msa0740430 | 0.804640 | 1.960500e-49 | -8.615850e-47 |
| Msa0534590 | Msa0740430 | 0.808255 | 3.388029e-50 | -8.615850e-47 |
| Msa0581760 | Msa0740430 | 0.817938 | 2.543978e-52 | -8.615850e-47 |
| Msa0593650 | Msa0740430 | 0.808158 | 3.553383e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0740430 | MtrunA17_Chr5g0440691 | 97.576 | 165 | 3 | 1 | 1 | 165 | 1 | 164 | 8.09e-117 | 327 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0740430 | AT5G60335.3 | 60.544 | 147 | 56 | 2 | 15 | 159 | 12 | 158 | 6.37e-61 | 186 |
| Msa0740430 | AT5G60335.1 | 60.544 | 147 | 56 | 2 | 15 | 159 | 12 | 158 | 6.37e-61 | 186 |
| Msa0740430 | AT5G60335.2 | 60.544 | 147 | 56 | 2 | 15 | 159 | 12 | 158 | 6.37e-61 | 186 |
Find 40 sgRNAs with CRISPR-Local
Find 150 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AATTGGGTTTATCAAGAAAT+TGG | 0.106490 | 5_1:-59358611 | None:intergenic |
| CATTATCAATTGCAACAATT+TGG | 0.183397 | 5_1:-59361606 | None:intergenic |
| GTTGTTCAACTTCAATCTTC+TGG | 0.247623 | 5_1:-59358658 | None:intergenic |
| ATTGGGTTTATCAAGAAATT+GGG | 0.362356 | 5_1:-59358610 | None:intergenic |
| GACTGGTAACTTAAAATTCA+AGG | 0.371883 | 5_1:-59361299 | None:intergenic |
| GCTCGAAGTGTTGGATTTGA+TGG | 0.372933 | 5_1:+59359293 | Msa0740430:CDS |
| AGATTGTGAGGGACAGTGTC+AGG | 0.376646 | 5_1:+59359046 | Msa0740430:intron |
| TATAGAGCAGTGGAAGTATA+AGG | 0.379763 | 5_1:+59361560 | Msa0740430:CDS |
| TTTAAGTTACCAGTCTATAT+CGG | 0.383846 | 5_1:+59361307 | Msa0740430:CDS |
| ATTATTTAGTGTCCGCGATT+TGG | 0.384448 | 5_1:+59361640 | Msa0740430:three_prime_UTR |
| TTGAACAACATCTGTGCTAA+TGG | 0.392045 | 5_1:+59358672 | Msa0740430:five_prime_UTR |
| TAATCCTTTGCATACCGATT+CGG | 0.416395 | 5_1:+59359265 | Msa0740430:CDS |
| TCGGCTGCTGCTCGAAGTGT+TGG | 0.445083 | 5_1:+59359284 | Msa0740430:CDS |
| GGAGACATTCTTGTCGTTGA+AGG | 0.449171 | 5_1:+59361506 | Msa0740430:CDS |
| AAGACAAGATGCTTCAAGAA+TGG | 0.472461 | 5_1:+59361485 | Msa0740430:CDS |
| ATTAGAATCATGGCTCACTT+TGG | 0.488635 | 5_1:-59359246 | None:intergenic |
| ACTTCGAGCAGCAGCCGAAT+CGG | 0.492615 | 5_1:-59359279 | None:intergenic |
| TGTTGGATTTGATGGTCCAT+TGG | 0.521699 | 5_1:+59359301 | Msa0740430:CDS |
| TATGCAAAGGATTAGAATCA+TGG | 0.523318 | 5_1:-59359256 | None:intergenic |
| TGTCGTTGAAGGTGAAGCAT+TGG | 0.530286 | 5_1:+59361517 | Msa0740430:CDS |
| ATCTGATCTCCGATATAGAC+TGG | 0.540031 | 5_1:-59361316 | None:intergenic |
| TATATCGGAGATCAGATTGT+TGG | 0.545806 | 5_1:+59361322 | Msa0740430:CDS |
| CTTCCACTGCTCTATAGTCA+AGG | 0.549215 | 5_1:-59361553 | None:intergenic |
| TTTGATGGTCCATTGGTACA+TGG | 0.550635 | 5_1:+59359308 | Msa0740430:CDS |
| TGAGATACATACACAGCTGC+AGG | 0.568759 | 5_1:-59361274 | None:intergenic |
| CTATACAACTCTGAATCAGA+TGG | 0.573952 | 5_1:+59361690 | Msa0740430:three_prime_UTR |
| ACTCCTCATGTACTTAAACC+TGG | 0.600357 | 5_1:+59359170 | Msa0740430:CDS |
| GATTGTGAGGGACAGTGTCA+GGG | 0.621464 | 5_1:+59359047 | Msa0740430:intron |
| ACAAGCATTCCATGTACCAA+TGG | 0.621685 | 5_1:-59359317 | None:intergenic |
| TTCCACTGCTCTATAGTCAA+GGG | 0.621924 | 5_1:-59361552 | None:intergenic |
| GTACTGAAGAACATCTTCCT+CGG | 0.633973 | 5_1:-59359222 | None:intergenic |
| ACACTAAATAATGAAACATG+AGG | 0.638542 | 5_1:-59361629 | None:intergenic |
| TACTAGAATGTAAACTCCTG+AGG | 0.642498 | 5_1:-59359106 | None:intergenic |
| AACTTCAGTATCTAAGTCTG+AGG | 0.645534 | 5_1:+59359132 | Msa0740430:CDS |
| ACTGCTCTATAGTCAAGGGT+TGG | 0.652806 | 5_1:-59361548 | None:intergenic |
| TCACCAGGTTTAAGTACATG+AGG | 0.653739 | 5_1:-59359173 | None:intergenic |
| AACCCTTGACTATAGAGCAG+TGG | 0.656459 | 5_1:+59361550 | Msa0740430:CDS |
| TGCAAAACATAACCAAATCG+CGG | 0.659977 | 5_1:-59361652 | None:intergenic |
| GCAGCCGAATCGGTATGCAA+AGG | 0.665902 | 5_1:-59359269 | None:intergenic |
| AAATGTGATGAGATGATATG+CGG | 0.720781 | 5_1:-59359353 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATTTGAGTTTTTAATTAATT+GGG | - | chr5_1:59358630-59358649 | None:intergenic | 10.0% |
| !!! | AATTTGAGTTTTTAATTAAT+TGG | - | chr5_1:59358631-59358650 | None:intergenic | 10.0% |
| !!! | TGAAAAAATTGATTATTTTT+TGG | + | chr5_1:59359469-59359488 | Msa0740430:intron | 10.0% |
| !! | AAAGATCAAATATAATATAT+AGG | + | chr5_1:59359702-59359721 | Msa0740430:intron | 10.0% |
| !! | AAGATCAAATATAATATATA+GGG | + | chr5_1:59359703-59359722 | Msa0740430:intron | 10.0% |
| !! | ATATAATAGATATGATATTA+TGG | + | chr5_1:59360906-59360925 | Msa0740430:intron | 10.0% |
| !! | ATTTAATACATGTAAATAAT+TGG | + | chr5_1:59361119-59361138 | Msa0740430:intron | 10.0% |
| !! | TTTAATACATGTAAATAATT+GGG | + | chr5_1:59361120-59361139 | Msa0740430:intron | 10.0% |
| !! | AACATTAAAAAATGGTATTA+TGG | + | chr5_1:59358900-59358919 | Msa0740430:intron | 15.0% |
| !!! | AAATCCTTAAATATTTTTGT+TGG | + | chr5_1:59358980-59358999 | Msa0740430:intron | 15.0% |
| !! | AATTACACATATTATTATTC+AGG | + | chr5_1:59359496-59359515 | Msa0740430:intron | 15.0% |
| !!! | AATAAAGATTTTAGAAGAAT+GGG | + | chr5_1:59359523-59359542 | Msa0740430:intron | 15.0% |
| !!! | AAGATGTTATAGAAATTTTA+AGG | + | chr5_1:59360354-59360373 | Msa0740430:intron | 15.0% |
| !!! | GTTTATTAGATATACATTTT+TGG | + | chr5_1:59360395-59360414 | Msa0740430:intron | 15.0% |
| !! | TACATGTATTAAATAGAATA+AGG | - | chr5_1:59361113-59361132 | None:intergenic | 15.0% |
| !! | TATATTGTCAGTGTATAAAA+AGG | - | chr5_1:59358847-59358866 | None:intergenic | 20.0% |
| !! | TAGGAACTAACATTAAAAAA+TGG | + | chr5_1:59358892-59358911 | Msa0740430:intron | 20.0% |
| !! | AAGACCAACAAAAATATTTA+AGG | - | chr5_1:59358987-59359006 | None:intergenic | 20.0% |
| !!! | TGATGTTTTGAAAAAAACAA+GGG | + | chr5_1:59359193-59359212 | Msa0740430:CDS | 20.0% |
| !!! | GAATAAAGATTTTAGAAGAA+TGG | + | chr5_1:59359522-59359541 | Msa0740430:intron | 20.0% |
| !! | ATCTTAATCTTTCTAATAAG+AGG | - | chr5_1:59360145-59360164 | None:intergenic | 20.0% |
| !!! | AAGATGTCATAGAAATTTTA+AGG | + | chr5_1:59360160-59360179 | Msa0740430:intron | 20.0% |
| !! | ATCTTAATCTTTCTAATAAG+AGG | - | chr5_1:59360145-59360164 | None:intergenic | 20.0% |
| !! | TGAAAATAACCACAAAATAT+TGG | + | chr5_1:59360493-59360512 | Msa0740430:intron | 20.0% |
| !! | TAATTCACAATGAGAAAATT+GGG | - | chr5_1:59360575-59360594 | None:intergenic | 20.0% |
| !! | ATAATTCACAATGAGAAAAT+TGG | - | chr5_1:59360576-59360595 | None:intergenic | 20.0% |
| !! | TATTATATCCAACAATACTA+TGG | + | chr5_1:59360943-59360962 | Msa0740430:intron | 20.0% |
| !! | ATTATATCCAACAATACTAT+GGG | + | chr5_1:59360944-59360963 | Msa0740430:intron | 20.0% |
| !!! | TCTTCACTTTTCTAATATTA+TGG | + | chr5_1:59361239-59361258 | Msa0740430:intron | 20.0% |
| !!! | CTTCACTTTTCTAATATTAT+GGG | + | chr5_1:59361240-59361259 | Msa0740430:intron | 20.0% |
| !!! | AGTATCTATGATCAATTTTT+GGG | + | chr5_1:59361720-59361739 | Msa0740430:three_prime_UTR | 20.0% |
| ! | ATTGGGTTTATCAAGAAATT+GGG | - | chr5_1:59358613-59358632 | None:intergenic | 25.0% |
| ! | AATTGGGTTTATCAAGAAAT+TGG | - | chr5_1:59358614-59358633 | None:intergenic | 25.0% |
| ! | CAAAATTATTTCAGCATTAC+TGG | - | chr5_1:59358797-59358816 | None:intergenic | 25.0% |
| !! | TTACACATGCATCATATTTT+AGG | + | chr5_1:59358873-59358892 | Msa0740430:intron | 25.0% |
| ! | GTATTATGGAGTGATTTAAT+TGG | + | chr5_1:59358914-59358933 | Msa0740430:intron | 25.0% |
| ! | TCTGAAAATGATGTTAAGTT+TGG | - | chr5_1:59359029-59359048 | None:intergenic | 25.0% |
| !!! | GTGATGTTTTGAAAAAAACA+AGG | + | chr5_1:59359192-59359211 | Msa0740430:CDS | 25.0% |
| ! | TTGTCAGTTAATTACATTAG+AGG | - | chr5_1:59359650-59359669 | None:intergenic | 25.0% |
| ! | TGTAATTAACTGACAAGAAT+AGG | + | chr5_1:59359654-59359673 | Msa0740430:intron | 25.0% |
| ! | ACAAGAATAGGAATGAAATT+TGG | + | chr5_1:59359666-59359685 | Msa0740430:intron | 25.0% |
| ! | TATAATATATAGGGTCTGTT+TGG | + | chr5_1:59359712-59359731 | Msa0740430:intron | 25.0% |
| !! | ATTAAGTTGTTTATCCAAAC+AGG | + | chr5_1:59359850-59359869 | Msa0740430:intron | 25.0% |
| !! | TTAAGTTGTTTATCCAAACA+GGG | + | chr5_1:59359851-59359870 | Msa0740430:intron | 25.0% |
| ! | TTGTAAAACAGTTAGGAAAA+TGG | + | chr5_1:59359879-59359898 | Msa0740430:intron | 25.0% |
| !!! | TGACTGAAAGAAGTTTTAAA+GGG | - | chr5_1:59359997-59360016 | None:intergenic | 25.0% |
| !!! | TTGACTGAAAGAAGTTTTAA+AGG | - | chr5_1:59359998-59360017 | None:intergenic | 25.0% |
| !! | AATGAGAATCCAATATTTTG+TGG | - | chr5_1:59360505-59360524 | None:intergenic | 25.0% |
| ! | ACAAAATATTGGATTCTCAT+TGG | + | chr5_1:59360504-59360523 | Msa0740430:intron | 25.0% |
| !!! | TTTTCAGTGTTATTGAATAG+CGG | + | chr5_1:59360611-59360630 | Msa0740430:intron | 25.0% |
| !! | GATTGACTATTTTCATAATG+CGG | + | chr5_1:59360765-59360784 | Msa0740430:intron | 25.0% |
| ! | TTGAGTAATAATGTGAATTG+AGG | + | chr5_1:59360853-59360872 | Msa0740430:intron | 25.0% |
| ! | GATGAACATTTAATGTCATT+CGG | - | chr5_1:59361091-59361110 | None:intergenic | 25.0% |
| !! | TTTAAGTTACCAGTCTATAT+CGG | + | chr5_1:59361307-59361326 | Msa0740430:CDS | 25.0% |
| !!! | TCTTGTGCATTTTTTTGAAT+TGG | + | chr5_1:59361409-59361428 | Msa0740430:intron | 25.0% |
| ! | CATTATCAATTGCAACAATT+TGG | - | chr5_1:59361609-59361628 | None:intergenic | 25.0% |
| ! | ACACTAAATAATGAAACATG+AGG | - | chr5_1:59361632-59361651 | None:intergenic | 25.0% |
| !! | GAGTATCTATGATCAATTTT+TGG | + | chr5_1:59361719-59361738 | Msa0740430:three_prime_UTR | 25.0% |
| !! | AAGAAATTGGGTTTTGTGAA+TGG | - | chr5_1:59358601-59358620 | None:intergenic | 30.0% |
| TTATGGAGTGATTTAATTGG+AGG | + | chr5_1:59358917-59358936 | Msa0740430:intron | 30.0% | |
| !!! | TTTTTGTTGGTCTTCAATTG+TGG | + | chr5_1:59358993-59359012 | Msa0740430:intron | 30.0% |
| !!! | TTTTGTTGGTCTTCAATTGT+GGG | + | chr5_1:59358994-59359013 | Msa0740430:intron | 30.0% |
| ! | AACATCATTTTCAGATTGTG+AGG | + | chr5_1:59359034-59359053 | Msa0740430:intron | 30.0% |
| ! | ACATCATTTTCAGATTGTGA+GGG | + | chr5_1:59359035-59359054 | Msa0740430:intron | 30.0% |
| !!! | GTTTTTTTCAAAACATCACC+AGG | - | chr5_1:59359191-59359210 | None:intergenic | 30.0% |
| TATGCAAAGGATTAGAATCA+TGG | - | chr5_1:59359259-59359278 | None:intergenic | 30.0% | |
| AAATGTGATGAGATGATATG+CGG | - | chr5_1:59359356-59359375 | None:intergenic | 30.0% | |
| !! | TTTAAAGAGAGCATTAGCAT+GGG | - | chr5_1:59359386-59359405 | None:intergenic | 30.0% |
| !!! | TTTTAAAGAGAGCATTAGCA+TGG | - | chr5_1:59359387-59359406 | None:intergenic | 30.0% |
| !! | AATTTCTAGCAGAGATATCA+AGG | - | chr5_1:59359416-59359435 | None:intergenic | 30.0% |
| AATGAAACAGATCCATTTCA+GGG | + | chr5_1:59359551-59359570 | Msa0740430:intron | 30.0% | |
| TAGCATAAACACTTACCATA+TGG | - | chr5_1:59359820-59359839 | None:intergenic | 30.0% | |
| TGAATCTCAGAATCAAATCT+AGG | - | chr5_1:59359964-59359983 | None:intergenic | 30.0% | |
| !! | AAACTGACGATAAGTATTGA+AGG | + | chr5_1:59360045-59360064 | Msa0740430:intron | 30.0% |
| TATTGAAGGATGAAGTGAAA+AGG | + | chr5_1:59360059-59360078 | Msa0740430:intron | 30.0% | |
| !! | AAACTGACGATAAGTATTGA+AGG | + | chr5_1:59360045-59360064 | Msa0740430:intron | 30.0% |
| TATTGAAGGATGAAGTGAAA+AGG | + | chr5_1:59360059-59360078 | Msa0740430:intron | 30.0% | |
| ! | GTAATATCACGAGTTTTCAT+GGG | - | chr5_1:59360445-59360464 | None:intergenic | 30.0% |
| AATTACAAAGTACACTTACG+TGG | - | chr5_1:59360467-59360486 | None:intergenic | 30.0% | |
| !! | TTGTACTAATCAGAGTATTG+CGG | - | chr5_1:59360670-59360689 | None:intergenic | 30.0% |
| AGTTATTCCCATAGTATTGT+TGG | - | chr5_1:59360954-59360973 | None:intergenic | 30.0% | |
| !!! | GTTTTTATGTTGCTTTGGTT+GGG | - | chr5_1:59361066-59361085 | None:intergenic | 30.0% |
| !!! | TGTTTTTATGTTGCTTTGGT+TGG | - | chr5_1:59361067-59361086 | None:intergenic | 30.0% |
| GACTGGTAACTTAAAATTCA+AGG | - | chr5_1:59361302-59361321 | None:intergenic | 30.0% | |
| TTCAAAAAAATGCACAAGAC+AGG | - | chr5_1:59361408-59361427 | None:intergenic | 30.0% | |
| GTTGTTCAACTTCAATCTTC+TGG | - | chr5_1:59358661-59358680 | None:intergenic | 35.0% | |
| TTGAACAACATCTGTGCTAA+TGG | + | chr5_1:59358672-59358691 | Msa0740430:five_prime_UTR | 35.0% | |
| ! | GCAGAAAAGTTTTACACTGA+CGG | + | chr5_1:59358945-59358964 | Msa0740430:intron | 35.0% |
| TACTAGAATGTAAACTCCTG+AGG | - | chr5_1:59359109-59359128 | None:intergenic | 35.0% | |
| AACTTCAGTATCTAAGTCTG+AGG | + | chr5_1:59359132-59359151 | Msa0740430:CDS | 35.0% | |
| ! | AAAAACAAGGGTTTTTACCG+AGG | + | chr5_1:59359205-59359224 | Msa0740430:CDS | 35.0% |
| ATTAGAATCATGGCTCACTT+TGG | - | chr5_1:59359249-59359268 | None:intergenic | 35.0% | |
| ! | TAATCCTTTGCATACCGATT+CGG | + | chr5_1:59359265-59359284 | Msa0740430:CDS | 35.0% |
| GAATGAAACAGATCCATTTC+AGG | + | chr5_1:59359550-59359569 | Msa0740430:intron | 35.0% | |
| AGACTAATAGACATTTGCTC+AGG | - | chr5_1:59359577-59359596 | None:intergenic | 35.0% | |
| TAGCTTATGACATGTCCATA+TGG | + | chr5_1:59359802-59359821 | Msa0740430:intron | 35.0% | |
| ! | TTTTACAATATCGCCCTGTT+TGG | - | chr5_1:59359867-59359886 | None:intergenic | 35.0% |
| GGCGATATTGTAAAACAGTT+AGG | + | chr5_1:59359872-59359891 | Msa0740430:intron | 35.0% | |
| !! | TCATGACAGATGTTAGCTTT+AGG | + | chr5_1:59359935-59359954 | Msa0740430:intron | 35.0% |
| !!! | AAAGAAGTTTTAAAGGGCAG+CGG | - | chr5_1:59359991-59360010 | None:intergenic | 35.0% |
| ! | GGTAATATCACGAGTTTTCA+TGG | - | chr5_1:59360446-59360465 | None:intergenic | 35.0% |
| TTATTGAATAGCGGCTATAG+TGG | + | chr5_1:59360620-59360639 | Msa0740430:intron | 35.0% | |
| ! | ACTGTATTTTCTCTCTGTTC+TGG | - | chr5_1:59360994-59361013 | None:intergenic | 35.0% |
| TAGTGACTTACACAACTTAG+AGG | + | chr5_1:59361020-59361039 | Msa0740430:intron | 35.0% | |
| !!! | CGGTTGTTTTTATGTTGCTT+TGG | - | chr5_1:59361071-59361090 | None:intergenic | 35.0% |
| ! | AATAATTGGGCCTTGTCTAT+TGG | + | chr5_1:59361133-59361152 | Msa0740430:intron | 35.0% |
| ACCTTCGTGTTATGTTAGTA+GGG | - | chr5_1:59361159-59361178 | None:intergenic | 35.0% | |
| ! | AGTTTCTTCGTTTTCTTTCC+TGG | + | chr5_1:59361214-59361233 | Msa0740430:intron | 35.0% |
| ATTAGAAAAGTGAAGAAGCC+AGG | - | chr5_1:59361235-59361254 | None:intergenic | 35.0% | |
| TATATCGGAGATCAGATTGT+TGG | + | chr5_1:59361322-59361341 | Msa0740430:CDS | 35.0% | |
| AAGACAAGATGCTTCAAGAA+TGG | + | chr5_1:59361485-59361504 | Msa0740430:CDS | 35.0% | |
| ! | TATAGAGCAGTGGAAGTATA+AGG | + | chr5_1:59361560-59361579 | Msa0740430:CDS | 35.0% |
| ATTATTTAGTGTCCGCGATT+TGG | + | chr5_1:59361640-59361659 | Msa0740430:three_prime_UTR | 35.0% | |
| TGCAAAACATAACCAAATCG+CGG | - | chr5_1:59361655-59361674 | None:intergenic | 35.0% | |
| CTATACAACTCTGAATCAGA+TGG | + | chr5_1:59361690-59361709 | Msa0740430:three_prime_UTR | 35.0% | |
| TAACAAACAGTCAAGCTGCA+TGG | - | chr5_1:59358763-59358782 | None:intergenic | 40.0% | |
| ACTCCTCATGTACTTAAACC+TGG | + | chr5_1:59359170-59359189 | Msa0740430:CDS | 40.0% | |
| TCACCAGGTTTAAGTACATG+AGG | - | chr5_1:59359176-59359195 | None:intergenic | 40.0% | |
| GTACTGAAGAACATCTTCCT+CGG | - | chr5_1:59359225-59359244 | None:intergenic | 40.0% | |
| ! | TGTTGGATTTGATGGTCCAT+TGG | + | chr5_1:59359301-59359320 | Msa0740430:CDS | 40.0% |
| ! | TTTGATGGTCCATTGGTACA+TGG | + | chr5_1:59359308-59359327 | Msa0740430:CDS | 40.0% |
| ACAAGCATTCCATGTACCAA+TGG | - | chr5_1:59359320-59359339 | None:intergenic | 40.0% | |
| !!! | AAGAAGTTTTAAAGGGCAGC+GGG | - | chr5_1:59359990-59360009 | None:intergenic | 40.0% |
| TAATAGCAGCCATAGTACTG+TGG | + | chr5_1:59360699-59360718 | Msa0740430:intron | 40.0% | |
| AAGCACTTGAGTAGAAGTCT+TGG | - | chr5_1:59360835-59360854 | None:intergenic | 40.0% | |
| GACCTTCGTGTTATGTTAGT+AGG | - | chr5_1:59361160-59361179 | None:intergenic | 40.0% | |
| TCATGAAAGAACTAGAGCGA+AGG | - | chr5_1:59361182-59361201 | None:intergenic | 40.0% | |
| ATCTGATCTCCGATATAGAC+TGG | - | chr5_1:59361319-59361338 | None:intergenic | 40.0% | |
| TTCCACTGCTCTATAGTCAA+GGG | - | chr5_1:59361555-59361574 | None:intergenic | 40.0% | |
| ! | CTTTTGCAAGAATGCTCCTC+AGG | + | chr5_1:59359090-59359109 | Msa0740430:exon | 45.0% |
| !! | GCTCGAAGTGTTGGATTTGA+TGG | + | chr5_1:59359293-59359312 | Msa0740430:CDS | 45.0% |
| ! | CACGAGTTTTCATGGGATGT+TGG | - | chr5_1:59360438-59360457 | None:intergenic | 45.0% |
| TCTGCTATGCCACAGTACTA+TGG | - | chr5_1:59360711-59360730 | None:intergenic | 45.0% | |
| GCAGATCGCATCAAATAGAG+AGG | - | chr5_1:59360745-59360764 | None:intergenic | 45.0% | |
| GCGGTGAAAATATGCATGCA+TGG | + | chr5_1:59360784-59360803 | Msa0740430:intron | 45.0% | |
| GGAATAACTCTCTGCAGAGT+TGG | + | chr5_1:59360965-59360984 | Msa0740430:intron | 45.0% | |
| GTTAGTAGGGCCAATAGACA+AGG | - | chr5_1:59361146-59361165 | None:intergenic | 45.0% | |
| GCCCTACTAACATAACACGA+AGG | + | chr5_1:59361155-59361174 | Msa0740430:intron | 45.0% | |
| TGAGATACATACACAGCTGC+AGG | - | chr5_1:59361277-59361296 | None:intergenic | 45.0% | |
| GGAGACATTCTTGTCGTTGA+AGG | + | chr5_1:59361506-59361525 | Msa0740430:CDS | 45.0% | |
| TGTCGTTGAAGGTGAAGCAT+TGG | + | chr5_1:59361517-59361536 | Msa0740430:CDS | 45.0% | |
| ACTGCTCTATAGTCAAGGGT+TGG | - | chr5_1:59361551-59361570 | None:intergenic | 45.0% | |
| AACCCTTGACTATAGAGCAG+TGG | + | chr5_1:59361550-59361569 | Msa0740430:CDS | 45.0% | |
| CTTCCACTGCTCTATAGTCA+AGG | - | chr5_1:59361556-59361575 | None:intergenic | 45.0% | |
| AGATTGTGAGGGACAGTGTC+AGG | + | chr5_1:59359046-59359065 | Msa0740430:intron | 50.0% | |
| GATTGTGAGGGACAGTGTCA+GGG | + | chr5_1:59359047-59359066 | Msa0740430:intron | 50.0% | |
| CATTTGCTCAGGCCCTGAAA+TGG | - | chr5_1:59359566-59359585 | None:intergenic | 50.0% | |
| GCAGCCGAATCGGTATGCAA+AGG | - | chr5_1:59359272-59359291 | None:intergenic | 55.0% | |
| ACTTCGAGCAGCAGCCGAAT+CGG | - | chr5_1:59359282-59359301 | None:intergenic | 55.0% | |
| TCGGCTGCTGCTCGAAGTGT+TGG | + | chr5_1:59359284-59359303 | Msa0740430:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_1 | gene | 59358595 | 59361747 | 59358595 | ID=Msa0740430;Name=Msa0740430 |
| chr5_1 | mRNA | 59358595 | 59361747 | 59358595 | ID=Msa0740430-mRNA-1;Parent=Msa0740430;Name=Msa0740430-mRNA-1;_AED=0.03;_eAED=0.03;_QI=198|1|1|1|0.66|0.5|4|167|165 |
| chr5_1 | exon | 59358595 | 59358739 | 59358595 | ID=Msa0740430-mRNA-1:exon:17055;Parent=Msa0740430-mRNA-1 |
| chr5_1 | exon | 59359048 | 59359376 | 59359048 | ID=Msa0740430-mRNA-1:exon:17056;Parent=Msa0740430-mRNA-1 |
| chr5_1 | exon | 59361274 | 59361389 | 59361274 | ID=Msa0740430-mRNA-1:exon:17057;Parent=Msa0740430-mRNA-1 |
| chr5_1 | exon | 59361475 | 59361747 | 59361475 | ID=Msa0740430-mRNA-1:exon:17058;Parent=Msa0740430-mRNA-1 |
| chr5_1 | five_prime_UTR | 59358595 | 59358739 | 59358595 | ID=Msa0740430-mRNA-1:five_prime_utr;Parent=Msa0740430-mRNA-1 |
| chr5_1 | five_prime_UTR | 59359048 | 59359100 | 59359048 | ID=Msa0740430-mRNA-1:five_prime_utr;Parent=Msa0740430-mRNA-1 |
| chr5_1 | CDS | 59359101 | 59359376 | 59359101 | ID=Msa0740430-mRNA-1:cds;Parent=Msa0740430-mRNA-1 |
| chr5_1 | CDS | 59361274 | 59361389 | 59361274 | ID=Msa0740430-mRNA-1:cds;Parent=Msa0740430-mRNA-1 |
| chr5_1 | CDS | 59361475 | 59361580 | 59361475 | ID=Msa0740430-mRNA-1:cds;Parent=Msa0740430-mRNA-1 |
| chr5_1 | three_prime_UTR | 59361581 | 59361747 | 59361581 | ID=Msa0740430-mRNA-1:three_prime_utr;Parent=Msa0740430-mRNA-1 |
| Gene Sequence |
| Protein sequence |
